BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12449
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1
PE=2 SV=1
Length = 1103
Score = 89.4 bits (220), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/48 (75%), Positives = 43/48 (89%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRFG 98
+LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+ +L Q++++QRFG
Sbjct: 1049 RLWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVRKDLEDQERLLQRFG 1096
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/47 (65%), Positives = 36/47 (76%)
Query: 12 AMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQT 58
A D +++VLDGRQLALK+S NSVYGFTGAQVGKLPC +Q T
Sbjct: 671 AQETDPLRRQVLDGRQLALKVSPNSVYGFTGAQVGKLPCLEISQSVT 717
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1
SV=2
Length = 1107
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/48 (75%), Positives = 43/48 (89%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRFG 98
+LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+ +L Q+Q+++RFG
Sbjct: 1053 RLWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVRKDLEDQEQLLRRFG 1100
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/47 (68%), Positives = 37/47 (78%)
Query: 12 AMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQT 58
A D +++VLDGRQLALK+SANSVYGFTGAQVGKLPC +Q T
Sbjct: 675 AKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVT 721
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/48 (75%), Positives = 43/48 (89%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRFG 98
+LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+ +L Q++++QRFG
Sbjct: 1049 RLWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVRKDLEDQERLLQRFG 1096
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 12 AMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQT 58
A D +++VLDGRQLALK+SANSVYGFTGA+VGKLPC +Q T
Sbjct: 671 AQETDPLRRQVLDGRQLALKVSANSVYGFTGAEVGKLPCLEISQSVT 717
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1
SV=2
Length = 1105
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/48 (75%), Positives = 43/48 (89%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRFG 98
+LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+ +L Q++++QRFG
Sbjct: 1051 RLWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVRKDLEDQERLLQRFG 1098
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/47 (68%), Positives = 37/47 (78%)
Query: 12 AMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQT 58
A D +++VLDGRQLALK+SANSVYGFTGAQVGKLPC +Q T
Sbjct: 673 AQETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVT 719
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/48 (72%), Positives = 43/48 (89%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRFG 98
+LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+ +L Q+++++RFG
Sbjct: 1052 RLWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVRKDLEDQERLLRRFG 1099
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/47 (65%), Positives = 37/47 (78%)
Query: 12 AMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQT 58
A D +++VLDGRQLALK+SANSVYGFTGAQVG+LPC +Q T
Sbjct: 674 AKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGRLPCLEISQSVT 720
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 44/52 (84%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRFGTIAW 102
+LWT+CQ CQ SLHE+VIC++RDCPIFYMR+KV+++L +Q++ + RFG W
Sbjct: 1041 RLWTECQRCQESLHEEVICSNRDCPIFYMRQKVRMDLDNQEKRVLRFGLAEW 1092
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/35 (94%), Positives = 34/35 (97%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
D FK+KVLDGRQLALKISANSVYGFTGAQVGKLPC
Sbjct: 668 DPFKRKVLDGRQLALKISANSVYGFTGAQVGKLPC 702
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRFGTIAW 102
+ WTQCQ C GSLH+ V+C++RDCPIFYMR KVQ++LI + + RF + W
Sbjct: 1054 EAWTQCQRCSGSLHQPVLCSNRDCPIFYMRTKVQLDLIEAKKTLNRF-NVEW 1104
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/35 (88%), Positives = 33/35 (94%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
D FK+ VLDGRQLALKISANSVYGFTGA+VGKLPC
Sbjct: 683 DPFKRAVLDGRQLALKISANSVYGFTGARVGKLPC 717
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 43 AQVGKLP---CQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRFGT 99
AQV L +LWTQCQ CQGS+H+ VICTSRDCPIFYMR +L +++RF
Sbjct: 1024 AQVNDLEVRFARLWTQCQRCQGSMHQDVICTSRDCPIFYMRIAEHKKLQQSVDLLKRFDE 1083
Query: 100 IAW 102
++W
Sbjct: 1084 MSW 1086
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 7/71 (9%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQGSLHEQVICTSRDCP 75
D FKK VLDGRQLALK+SANSVYGFTGA G+LPC + T G Q+I ++D
Sbjct: 665 DPFKKAVLDGRQLALKVSANSVYGFTGATNGRLPCLAISSSVTSYG---RQMIEKTKDV- 720
Query: 76 IFYMRKKVQIE 86
+ K+ +IE
Sbjct: 721 ---VEKRYRIE 728
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 36/47 (76%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRF 97
+LWTQCQ CQGSLH+ V+CTSRDCPIFY R+K Q ++ +QR+
Sbjct: 1057 RLWTQCQECQGSLHQDVLCTSRDCPIFYRRRKAQKDMAEARVQLQRW 1103
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 38/48 (79%), Gaps = 2/48 (4%)
Query: 3 KFGTKELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
K +LKEA D F++ VLDGRQLALKISANSVYGFTGA VG+LPC
Sbjct: 674 KRAKADLKEAK--DPFERAVLDGRQLALKISANSVYGFTGATVGQLPC 719
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRF 97
+LWTQCQ CQGSLH+ V+CTSRDCPIFY R K Q ++ Q + R+
Sbjct: 1047 RLWTQCQECQGSLHQDVLCTSRDCPIFYRRMKAQKDMAVARQQLDRW 1093
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 3 KFGTKELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
K +LKEA D +K VLDGRQLALKISANSVYGFTGA VG+LPC
Sbjct: 666 KRAKADLKEAK--DPLEKAVLDGRQLALKISANSVYGFTGATVGQLPC 711
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQGSLHEQVICTSRDCP 75
D FKK VL+GRQLALKISANSVYGFTGA VGKLPC + T G E + T +
Sbjct: 614 DPFKKDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAFG--REMIEKTKNEVQ 671
Query: 76 IFYMRKK-----VQIELISQDQIIQRFG 98
+Y +K ++ D ++ +FG
Sbjct: 672 EYYSKKNGHPYDAKVIYGDTDSVMVKFG 699
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 37 VYGFTGAQVGKLP---CQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQI 93
+YG +Q+ L +LWT+CQ CQGSLH++V+C+++DCPIFYMR K Q ++ Q
Sbjct: 970 LYGNALSQMNYLENKFSRLWTECQRCQGSLHQEVLCSNKDCPIFYMRTKAQKDVHQQALE 1029
Query: 94 IQRFGTIAW 102
+ ++ W
Sbjct: 1030 LVKWDNTNW 1038
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/46 (71%), Positives = 36/46 (78%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQG 61
DEFK+ V +GRQLALKISANSVYGFTGA VGKLPC +Q T G
Sbjct: 647 DEFKRMVYNGRQLALKISANSVYGFTGATVGKLPCLEISQSVTAFG 692
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 37/48 (77%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRFG 98
+LWT+CQ C ++ ++V C++RDCPI+YMR+KV+ EL +I+RFG
Sbjct: 1025 RLWTECQNCAKTMQDKVNCSARDCPIYYMREKVRNELSEASAVIERFG 1072
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 3 KFGTKELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQGS 62
K K+L++ D FK+ VL+GRQLALKISANSVYGFTGA VGKLPC + T G
Sbjct: 675 KRAKKDLRDEK--DPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAYGR 732
Query: 63 ---LHEQVICTSRDCPIFYMRKKVQIELISQDQIIQRFGT 99
L + + C + + D ++ +FGT
Sbjct: 733 TMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGT 772
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 36/45 (80%), Gaps = 2/45 (4%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQIIQ 95
+LWTQCQ C G+LH +V+C++++C IFYMR KV+ EL Q+++ Q
Sbjct: 1051 RLWTQCQRCAGNLHSEVLCSNKNCDIFYMRVKVKKEL--QEKVEQ 1093
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/48 (68%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 3 KFGTKELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
K +LKEA D +K VLDGRQLALKISANSVYGFTGA +G+LPC
Sbjct: 631 KRAKADLKEAK--DPLEKAVLDGRQLALKISANSVYGFTGATIGQLPC 676
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 51 QLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQIELIS-QDQI 93
QLWT+CQ CQG+LH VIC +RDCPIFY R K++ ++ + Q+Q+
Sbjct: 1044 QLWTECQRCQGNLHVDVICMNRDCPIFYRRAKIKKDIANLQEQV 1087
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/36 (69%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQV-GKLPC 50
+ K VL+GRQLALKISANSVYG+TGA G+LPC
Sbjct: 676 NNITKMVLNGRQLALKISANSVYGYTGASSGGQLPC 711
>sp|Q4U3V0|DPOL_TNAVC DNA polymerase OS=Trichoplusia ni ascovirus 2c GN=ORF1 PE=3 SV=2
Length = 1025
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQGS--LHEQV-ICTSR 72
D +K +LD RQLA KI+ANS+YG TGA GKLPC+ + T G + E + + + +
Sbjct: 666 DPVEKALLDKRQLAYKITANSIYGATGASNGKLPCKNVAKAITALGRKVIKESIQMASDK 725
Query: 73 DCPIFY 78
P+ Y
Sbjct: 726 GIPVIY 731
>sp|O36363|DPOL_ALHV1 DNA polymerase catalytic subunit OS=Alcelaphine herpesvirus 1
(strain C500) GN=9 PE=3 SV=1
Length = 1026
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 7 KELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQG-SLHE 65
KEL++ D K +LD +QLA+K++ NSVYGFTG G LPC + + T QG ++ E
Sbjct: 676 KELEQCQ--DAKMKTILDKQQLAIKVTCNSVYGFTGVASGMLPCLMIAETVTLQGRTMLE 733
Query: 66 QVICTSRDCPIFYMRKKVQIEL 87
+ + + Y++K E+
Sbjct: 734 KTKQFVENVTVEYLQKICNFEV 755
>sp|P28857|DPOL_HHV6U DNA polymerase OS=Human herpesvirus 6A (strain Uganda-1102) GN=U38
PE=3 SV=1
Length = 1012
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 7 KELKEAMT--LDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQGSLH 64
+E+K M D K +LD +QLALK + NSVYG TGA G LPC TC G
Sbjct: 640 REVKAEMQNCSDPMMKLLLDKKQLALKTTCNSVYGVTGAAHGLLPCVAIAASVTCLG--- 696
Query: 65 EQVICTSRDCPIFYMRKKVQIE 86
+++C++ D Y+ K+Q E
Sbjct: 697 REMLCSTVD----YVNSKMQSE 714
>sp|Q9QJ32|DPOL_HHV6Z DNA polymerase catalytic subunit OS=Human herpesvirus 6B (strain
Z29) GN=U38 PE=3 SV=1
Length = 1012
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 7 KELKEAMT--LDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQGSLH 64
+E+K M D K +LD +QLALK + NSVYG TGA G LPC TC G
Sbjct: 640 REVKAEMQNCSDPMMKLLLDKKQLALKTTCNSVYGVTGAAHGLLPCVAIAASVTCLG--- 696
Query: 65 EQVICTSRDCPIFYMRKKVQIE 86
+++C++ D Y+ K+Q E
Sbjct: 697 REMLCSTVD----YVNSKMQSE 714
>sp|Q779J8|DPOL_SFAVA DNA polymerase OS=Spodoptera frugiperda ascovirus 1a GN=ORF1 PE=3
SV=1
Length = 1104
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQGSL 63
D + +LD QLA K++ANS+YG TGA GKLPCQ + T G +
Sbjct: 746 DPMARDILDKSQLAYKVTANSIYGSTGASNGKLPCQNVAKVTTALGRM 793
>sp|A4KX57|DPOL_HVAVE DNA polymerase OS=Heliothis virescens ascovirus 3e GN=ORF1 PE=3
SV=1
Length = 1086
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQG 61
D + +LD QLA K++ANSVYG TGA GKLPCQ + T G
Sbjct: 735 DPLARDILDKSQLAYKVTANSVYGSTGAVNGKLPCQNVAKVTTALG 780
>sp|P52367|DPOL_EHV2 DNA polymerase OS=Equine herpesvirus 2 (strain 86/87) GN=9 PE=3
SV=1
Length = 1008
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 12 AMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQG 61
A DE + +LD +QLA+K++ N+VYGFTG G LPC + T QG
Sbjct: 659 ATVSDEAVRTILDKQQLAIKVTCNAVYGFTGVASGILPCLKIAETVTFQG 708
>sp|P24907|DPOL_SHV21 DNA polymerase OS=Saimiriine herpesvirus 2 (strain 11) GN=9 PE=3
SV=1
Length = 1009
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 7 KELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQG 61
++L E LD K +LD +QLA+K++ N+VYGFTG G LPC + T QG
Sbjct: 648 QKLAECEDLD--TKTILDKQQLAIKVTCNAVYGFTGVASGLLPCISIAETVTLQG 700
>sp|P27172|DPOL_MUHVS DNA polymerase OS=Murid herpesvirus 1 (strain Smith) GN=UL54 PE=3
SV=1
Length = 1097
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 7 KELKEAMT--LDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
K ++EAM +E ++ ++D +QLALK++ N+ YGFTG G LPC
Sbjct: 690 KLVREAMKQCTNEMQRMIMDKQQLALKVTCNAFYGFTGVAAGMLPC 735
>sp|Q9DKT8|DPOL_ELHVK DNA polymerase catalytic subunit OS=Elephantid herpesvirus 1
(isolate Asian elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1041
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQG----SLHEQVICTS 71
D + +LD +QLALK++ N+VYGFTG G PC + T QG ++ +Q IC
Sbjct: 684 DPLMQILLDKQQLALKLTCNAVYGFTGVSKGMFPCLAIAESVTAQGRQLLAVTKQYICDR 743
Query: 72 --------------RDCPIFYMRKKVQIELISQDQI 93
DCP+ R K+ + D +
Sbjct: 744 FNDWTFLTQIAPELVDCPVDSNRFKIDVVYGDTDSV 779
>sp|Q69025|DPOL_GPCMV DNA polymerase OS=Guinea pig cytomegalovirus (strain 22122) PE=3
SV=2
Length = 1117
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
DE +K +LD QLALK++ N+ YGFTG G +PC
Sbjct: 725 DEVEKLILDKYQLALKVTCNAFYGFTGVSSGMMPC 759
>sp|Q9YUS2|DPOL_TUHV2 DNA polymerase OS=Tupaiid herpesvirus (strain 2) GN=DPOL PE=3 SV=1
Length = 1171
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 7 KELKEAM--TLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
+ ++EAM DE ++ +LD QLALK++ N+ YGFTG G LPC
Sbjct: 773 RAVREAMRECEDETRRLLLDKEQLALKVTCNAFYGFTGFSQGMLPC 818
>sp|Q9YUS3|DPOL_TUHV1 DNA polymerase OS=Tupaiid herpesvirus 1 (strain 1) GN=DPOL PE=3
SV=1
Length = 1171
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 7 KELKEAM--TLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
+ ++EAM DE ++ +LD QLALK++ N+ YGFTG G LPC
Sbjct: 773 RAVREAMRECEDETRRLLLDKEQLALKVTCNAFYGFTGFSQGMLPC 818
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 7 KELKEAMTL--DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQGSLH 64
KE+K M + + + +LD +QLALK + NSVYG TGA LPC TC G
Sbjct: 639 KEVKMQMKMCNNPVMEMLLDKKQLALKTTCNSVYGVTGATHSLLPCVAIAASVTCLG--- 695
Query: 65 EQVICTSRDCPIFYMRKKVQIELISQDQIIQRFG 98
+++C + D V + S I++FG
Sbjct: 696 REMLCKTVD--------YVDSAMYSDTFFIEKFG 721
>sp|Q3KSP1|DPOL_EBVG DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain GD1)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQG 61
D ++ +LD +QLA+K + N+VYGFTG G PC + T QG
Sbjct: 666 DPRQRTILDKQQLAIKCTCNAVYGFTGVANGLFPCLSIAETVTLQG 711
>sp|P03198|DPOL_EBVB9 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain
B95-8) GN=BALF5 PE=1 SV=1
Length = 1015
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQG 61
D ++ +LD +QLA+K + N+VYGFTG G PC + T QG
Sbjct: 666 DPRQRTILDKQQLAIKCTCNAVYGFTGVANGLFPCLSIAETVTLQG 711
>sp|Q1HVC1|DPOL_EBVA8 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain
AG876) GN=BALF5 PE=3 SV=1
Length = 1015
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQG 61
D ++ +LD +QLA+K + N+VYGFTG G PC + T QG
Sbjct: 666 DPRQRTILDKQQLAIKCTCNAVYGFTGVANGLFPCLSIAETVTLQG 711
>sp|O71121|DPOL_RHCM6 DNA polymerase OS=Rhesus cytomegalovirus (strain 68-1) GN=UL54 PE=3
SV=1
Length = 1035
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
D K+ +LD QLALK++ N+ YGFTG G +PC
Sbjct: 669 DPVKRMLLDKEQLALKVTCNAFYGFTGVVNGMMPC 703
>sp|P30321|DPOL_PBCV1 DNA polymerase OS=Paramecium bursaria Chlorella virus 1 GN=DPO PE=3
SV=2
Length = 913
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 3 KFGTKELKEAM-TLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
K K + EA D+FK+ + D +Q + K+ NSVYGF GA G +PC
Sbjct: 556 KLAKKHMAEAKRNGDDFKEALYDAQQRSFKVVMNSVYGFLGASKGFIPC 604
>sp|Q6UDK1|DPOL_PSHV1 DNA polymerase catalytic subunit OS=Psittacid herpesvirus 1
(isolate Amazon parrot/-/97-0001/1997) GN=UL30 PE=3 SV=1
Length = 1081
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 12 AMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
A T DE K +LD +Q+A+K+ NSVYGFTG G LPC
Sbjct: 708 AATEDE--KVLLDMQQIAIKVICNSVYGFTGVMNGMLPC 744
>sp|P30320|DPOL_PBCVN DNA polymerase OS=Paramecium bursaria Chlorella virus NY2A GN=DPO
PE=3 SV=1
Length = 913
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
DEF++ + D +Q + KI NSVYGF GA G +PC
Sbjct: 570 DEFREALYDAQQRSYKIVMNSVYGFLGASRGFIPC 604
>sp|Q85428|DPOL_RCMVM DNA polymerase OS=Rat cytomegalovirus (strain Maastricht) GN=UL54
PE=3 SV=2
Length = 1173
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 7 KELKEAMTL--DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
K +++AM DE ++ +D +QLALK++ N+ YGFTG LPC
Sbjct: 717 KLVRDAMKACGDEKQRMFMDKQQLALKVTCNAFYGFTGVAAPMLPC 762
>sp|Q9QSK2|DPOL_IIV6 DNA polymerase 037L OS=Invertebrate iridescent virus 6 GN=DPOL PE=3
SV=1
Length = 1273
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 7 KELKEAMTLDEFKK-----KVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQG 61
KE K +DE +LD RQ + KISANS+YG TG +VG LP C T G
Sbjct: 827 KENKSKEDIDEITSIENLLPILDKRQNSYKISANSMYGATGVRVGALPFMPIAMCTTYMG 886
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 1 MVKFGTKELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQV-GKLPC 50
MVK G K+ ++ KVL+ RQLALK+ AN YG+T A G++PC
Sbjct: 1038 MVKRGMKDCDS-----DYVNKVLNSRQLALKLIANVTYGYTSASFSGRMPC 1083
>sp|P89453|DPOL_HHV2H DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain
HG52) GN=UL30 PE=3 SV=1
Length = 1240
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 22 VLDGRQLALKISANSVYGFTGAQVGKLPC 50
+LD +Q A+K+ NSVYGFTG Q G LPC
Sbjct: 807 LLDKQQAAIKVVCNSVYGFTGVQHGLLPC 835
>sp|P07918|DPOL_HHV21 DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain
186) GN=UL30 PE=3 SV=1
Length = 1240
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 22 VLDGRQLALKISANSVYGFTGAQVGKLPC 50
+LD +Q A+K+ NSVYGFTG Q G LPC
Sbjct: 807 LLDKQQAAIKVVCNSVYGFTGVQHGLLPC 835
>sp|P09854|DPOL_HHV1S DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
SC16) GN=UL30 PE=3 SV=1
Length = 1235
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 22 VLDGRQLALKISANSVYGFTGAQVGKLPC 50
+LD +Q A+K+ NSVYGFTG Q G LPC
Sbjct: 802 LLDKQQAAIKVVCNSVYGFTGVQHGLLPC 830
>sp|P04292|DPOL_HHV1K DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
KOS) GN=UL30 PE=1 SV=1
Length = 1235
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 22 VLDGRQLALKISANSVYGFTGAQVGKLPC 50
+LD +Q A+K+ NSVYGFTG Q G LPC
Sbjct: 802 LLDKQQAAIKVVCNSVYGFTGVQHGLLPC 830
>sp|P07917|DPOL_HHV1A DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
Angelotti) GN=UL30 PE=1 SV=1
Length = 1235
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 22 VLDGRQLALKISANSVYGFTGAQVGKLPC 50
+LD +Q A+K+ NSVYGFTG Q G LPC
Sbjct: 802 LLDKQQAAIKVVCNSVYGFTGVQHGLLPC 830
>sp|P04293|DPOL_HHV11 DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain 17)
GN=UL30 PE=1 SV=2
Length = 1235
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 22 VLDGRQLALKISANSVYGFTGAQVGKLPC 50
+LD +Q A+K+ NSVYGFTG Q G LPC
Sbjct: 802 LLDKQQAAIKVVCNSVYGFTGVQHGLLPC 830
>sp|Q6SW77|DPOL_HCMVM DNA polymerase catalytic subunit OS=Human cytomegalovirus (strain
Merlin) GN=UL54 PE=3 SV=1
Length = 1242
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
D ++ +LD Q+ALK++ N+ YGFTG G +PC
Sbjct: 796 DPVRRMLLDKEQMALKVTCNAFYGFTGVVNGMMPC 830
>sp|P08546|DPOL_HCMVA DNA polymerase OS=Human cytomegalovirus (strain AD169) GN=UL54 PE=1
SV=2
Length = 1242
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 16 DEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
D ++ +LD Q+ALK++ N+ YGFTG G +PC
Sbjct: 796 DPVRRMLLDKEQMALKVTCNAFYGFTGVVNGMMPC 830
>sp|O70736|DPOL_RSIV DNA polymerase OS=Red sea bream iridovirus PE=3 SV=1
Length = 947
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 20 KKVLDGRQLALKISANSVYGFTGAQVGKLP 49
+ VLD +QLA KISANSVYG G Q G LP
Sbjct: 592 RAVLDKKQLAYKISANSVYGTMGTQRGYLP 621
>sp|Q196U0|DPOL_IIV3 DNA polymerase 120R OS=Invertebrate iridescent virus 3 GN=IIV3-120R
PE=3 SV=1
Length = 1141
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 3 KFGTKELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLP 49
+ GT +EA L + + +L+ RQLA K+SANS+YG TG + G LP
Sbjct: 660 RLGTAVGEEATHL-QTQIAILNQRQLAYKVSANSMYGITGVKAGMLP 705
>sp|Q4JQU7|DPOL_VZVO DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Oka vaccine) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 22 VLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQGSLHEQVICTSRD 73
+LD +Q A+K+ NSVYGFTG G LPC T G Q++ ++RD
Sbjct: 766 LLDKQQAAIKVVCNSVYGFTGVAQGFLPCLYVAATVTTIG---RQMLLSTRD 814
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,163,707
Number of Sequences: 539616
Number of extensions: 1203278
Number of successful extensions: 3873
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3760
Number of HSP's gapped (non-prelim): 123
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)