Query psy12449
Match_columns 102
No_of_seqs 168 out of 415
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:34:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iay_A DNA polymerase delta ca 98.8 3.1E-10 1.1E-14 99.0 -0.1 47 3-49 605-653 (919)
2 1qht_A Protein (DNA polymerase 98.8 6.6E-10 2.3E-14 95.0 0.2 46 4-49 458-505 (775)
3 2gv9_A DNA polymerase; polymer 98.7 1.1E-09 3.9E-14 97.8 0.4 46 4-49 741-787 (1193)
4 1s5j_A DNA polymerase I; repli 98.6 4.7E-09 1.6E-13 90.7 -0.5 46 4-49 537-586 (847)
5 3qex_A DNA polymerase, GP43; d 98.5 1.7E-08 5.6E-13 88.4 -0.4 32 18-49 547-578 (903)
6 3k59_A POL II, DNA polymerase 97.6 9.9E-06 3.4E-10 69.9 0.2 37 4-49 478-514 (786)
7 2py5_A DNA polymerase; protein 72.2 0.64 2.2E-05 38.5 -0.5 20 25-45 378-397 (575)
8 2hu9_A MERP, mercuric transpor 36.5 10 0.00035 25.9 0.7 14 66-79 35-49 (130)
9 1weu_A Inhibitor of growth fam 28.1 31 0.0011 22.0 1.9 20 56-76 39-59 (91)
10 3c6w_A P28ING5, inhibitor of g 25.6 23 0.00078 20.5 0.9 20 56-76 12-32 (59)
11 1ha8_A Pheromone, ER-23; NMR { 23.5 22 0.00075 20.3 0.5 14 66-79 32-45 (51)
12 1wen_A Inhibitor of growth fam 21.8 44 0.0015 20.0 1.7 20 56-76 19-39 (71)
13 2jmi_A Protein YNG1, ING1 homo 20.2 49 0.0017 21.0 1.7 20 56-76 29-49 (90)
No 1
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.84 E-value=3.1e-10 Score=99.00 Aligned_cols=47 Identities=66% Similarity=0.942 Sum_probs=42.4
Q ss_pred hhhHHHHHHHcC--cCHHHHhhcchhhhhhhccccccccccchhhccch
Q psy12449 3 KFGTKELKEAMT--LDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLP 49 (102)
Q Consensus 3 ~~~r~~~k~~~~--~~~~~~~~ld~~q~a~K~~~ns~Yg~~ga~~Er~~ 49 (102)
-..|+++|+.|+ .||.++.+||++|+|||+.|||+||++|+...+.+
T Consensus 605 l~~R~~~K~~mk~~~d~~~~~~ld~~Q~AlKi~~NS~YG~~G~~~~r~~ 653 (919)
T 3iay_A 605 ISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLP 653 (919)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHhhcccccccccccccccCccC
Confidence 357999999997 79999999999999999999999999999886665
No 2
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.79 E-value=6.6e-10 Score=95.02 Aligned_cols=46 Identities=39% Similarity=0.535 Sum_probs=41.8
Q ss_pred hhHHHHHHHcC--cCHHHHhhcchhhhhhhccccccccccchhhccch
Q psy12449 4 FGTKELKEAMT--LDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLP 49 (102)
Q Consensus 4 ~~r~~~k~~~~--~~~~~~~~ld~~q~a~K~~~ns~Yg~~ga~~Er~~ 49 (102)
..|+++|+.|+ .||.++.+||++|+|+|+.+||+||++|+...+++
T Consensus 458 ~~R~~~K~~~k~~~~~~~~~~~d~~Q~A~Ki~~NS~YG~~g~~~~r~~ 505 (775)
T 1qht_A 458 EERQKIKRKMKATVDPLEKKLLDYRQRAIKILANSFYGYYGYAKARWY 505 (775)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHTTHHHHHHCTTCSSC
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHhhheeeccccccccccccCcC
Confidence 57889999987 89999999999999999999999999999876665
No 3
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=98.75 E-value=1.1e-09 Score=97.76 Aligned_cols=46 Identities=39% Similarity=0.580 Sum_probs=42.5
Q ss_pred hhHHHHHHHcC-cCHHHHhhcchhhhhhhccccccccccchhhccch
Q psy12449 4 FGTKELKEAMT-LDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLP 49 (102)
Q Consensus 4 ~~r~~~k~~~~-~~~~~~~~ld~~q~a~K~~~ns~Yg~~ga~~Er~~ 49 (102)
..|+++|+.|+ .||.++.+||++|+|+|+++||+||++|+...+++
T Consensus 741 ~~Rk~~K~~mk~~~~~~~~llD~~QlAlKi~aNS~YG~~G~~~grlp 787 (1193)
T 2gv9_A 741 AMRKQIRSRIPQSSPEEAVLLDKQQAAIKVVCNSVYGFTGVQHGLLP 787 (1193)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSC
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcceeccccccccccc
Confidence 57899999998 68999999999999999999999999999987777
No 4
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=98.59 E-value=4.7e-09 Score=90.67 Aligned_cols=46 Identities=26% Similarity=0.163 Sum_probs=38.6
Q ss_pred hhHHHHHHHc-C---cCHHHHhhcchhhhhhhccccccccccchhhccch
Q psy12449 4 FGTKELKEAM-T---LDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLP 49 (102)
Q Consensus 4 ~~r~~~k~~~-~---~~~~~~~~ld~~q~a~K~~~ns~Yg~~ga~~Er~~ 49 (102)
..|+++|+.| + .||.++.+||++|+|+|+++||+||++|+..-+++
T Consensus 537 ~~R~~~kk~~~k~~~~~~~~~~~~d~~Q~AlKi~~NS~YG~~g~~~~~~~ 586 (847)
T 1s5j_A 537 DFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINATYGVFGAETFPLY 586 (847)
T ss_dssp HHHHHTHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSTTC
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 4576666655 3 48999999999999999999999999999876666
No 5
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=98.46 E-value=1.7e-08 Score=88.39 Aligned_cols=32 Identities=16% Similarity=-0.067 Sum_probs=28.1
Q ss_pred HHHhhcchhhhhhhccccccccccchhhccch
Q psy12449 18 FKKKVLDGRQLALKISANSVYGFTGAQVGKLP 49 (102)
Q Consensus 18 ~~~~~ld~~q~a~K~~~ns~Yg~~ga~~Er~~ 49 (102)
.++.+||.+|+|+|+.+||+||++|+..-+.+
T Consensus 547 ~~~~~~d~rQ~AlKi~~NS~YG~~G~~~~r~~ 578 (903)
T 3qex_A 547 RTEVAGMTAQINRKALINGLAGALGNVWFRYY 578 (903)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccccC
Confidence 35778899999999999999999999885555
No 6
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=97.59 E-value=9.9e-06 Score=69.88 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=29.5
Q ss_pred hhHHHHHHHcCcCHHHHhhcchhhhhhhccccccccccchhhccch
Q psy12449 4 FGTKELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLP 49 (102)
Q Consensus 4 ~~r~~~k~~~~~~~~~~~~ld~~q~a~K~~~ns~Yg~~ga~~Er~~ 49 (102)
.+|+++|+.|+ +.+|+|+|+.+||+||++|+..-+.+
T Consensus 478 ~~R~~~K~~~~---------~~~q~AlKi~~Ns~YG~~G~~~~~~~ 514 (786)
T 3k59_A 478 HGRDEAKRQGN---------KPLSQALKIIMNAFYGVLGTTACRFF 514 (786)
T ss_dssp HHHHHHHHTTC---------HHHHHHHHHHHHHHHHGGGSTTSTTC
T ss_pred HHHHHHHHhcc---------hHHHHhhheeeecccccccccCCCCC
Confidence 46777777643 34699999999999999999886666
No 7
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=72.19 E-value=0.64 Score=38.51 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=16.9
Q ss_pred hhhhhhhccccccccccchhh
Q psy12449 25 GRQLALKISANSVYGFTGAQV 45 (102)
Q Consensus 25 ~~q~a~K~~~ns~Yg~~ga~~ 45 (102)
.+| ++|+.+||+||..|+..
T Consensus 378 ~~~-~~Kl~lNS~YGk~g~~~ 397 (575)
T 2py5_A 378 IKQ-LAKLMLNSLYGKFASNP 397 (575)
T ss_dssp HHH-HHHHHHHSSHHHHTCCS
T ss_pred HHH-HHHHHHHhHhhhhccCc
Confidence 345 66999999999999885
No 8
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=36.50 E-value=10 Score=25.93 Aligned_cols=14 Identities=14% Similarity=0.743 Sum_probs=11.3
Q ss_pred ccccccCCCcc-cce
Q psy12449 66 QVICTSRDCPI-FYM 79 (102)
Q Consensus 66 ~v~C~s~DCPV-fY~ 79 (102)
--+|.|-|||| ||.
T Consensus 35 y~~C~~~~C~VvYf~ 49 (130)
T 2hu9_A 35 FYFCSLESCEVVYFN 49 (130)
T ss_dssp EEECCCTTCSEEEEC
T ss_pred EEeECCCCCCEEEEC
Confidence 35899999999 663
No 9
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.06 E-value=31 Score=21.99 Aligned_cols=20 Identities=35% Similarity=0.845 Sum_probs=14.3
Q ss_pred cccccccc-CCccccccCCCcc
Q psy12449 56 CQTCQGSL-HEQVICTSRDCPI 76 (102)
Q Consensus 56 Cq~C~gs~-~~~v~C~s~DCPV 76 (102)
| .|.... ..-|.|++-|||+
T Consensus 39 C-iC~~~~~g~MI~CD~~dC~~ 59 (91)
T 1weu_A 39 C-LCHQVSYGEMIGCDNPDCSI 59 (91)
T ss_dssp S-TTCCBCCSCCCCCSCSSCSC
T ss_pred E-ECCCCCCCCEeEecCCCCCC
Confidence 5 666532 4568999999993
No 10
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=25.59 E-value=23 Score=20.54 Aligned_cols=20 Identities=40% Similarity=0.964 Sum_probs=14.1
Q ss_pred cccccccc-CCccccccCCCcc
Q psy12449 56 CQTCQGSL-HEQVICTSRDCPI 76 (102)
Q Consensus 56 Cq~C~gs~-~~~v~C~s~DCPV 76 (102)
| .|.... +.-|.|++-|||+
T Consensus 12 C-~C~~~~~g~mi~CD~~~C~~ 32 (59)
T 3c6w_A 12 C-LCHQVSYGEMIGCDNPDCPI 32 (59)
T ss_dssp T-TTTEECCSEEEECSCTTCSS
T ss_pred E-ECCCCCCCCeeEeeCCCCCC
Confidence 5 566532 4458999999994
No 11
>1ha8_A Pheromone, ER-23; NMR {Euplotes raikovi} SCOP: g.58.1.1
Probab=23.54 E-value=22 Score=20.33 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=11.0
Q ss_pred ccccccCCCcccce
Q psy12449 66 QVICTSRDCPIFYM 79 (102)
Q Consensus 66 ~v~C~s~DCPVfY~ 79 (102)
+.-|+|.||.-|.+
T Consensus 32 pagcsnsdctafls 45 (51)
T 1ha8_A 32 PAGCSNSDCTAFLS 45 (51)
T ss_dssp TTSSSSSTTHHHHH
T ss_pred CCCCCcchHHHHHH
Confidence 56799999987753
No 12
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=21.82 E-value=44 Score=20.02 Aligned_cols=20 Identities=35% Similarity=0.879 Sum_probs=14.4
Q ss_pred ccccccc-cCCccccccCCCcc
Q psy12449 56 CQTCQGS-LHEQVICTSRDCPI 76 (102)
Q Consensus 56 Cq~C~gs-~~~~v~C~s~DCPV 76 (102)
| .|... ...-|.|++-|||+
T Consensus 19 C-~C~~~~~g~MI~CD~~~C~~ 39 (71)
T 1wen_A 19 C-LCHQVSYGEMIGCDNPDCSI 39 (71)
T ss_dssp S-TTCCCSCSSEECCSCSSCSC
T ss_pred E-ECCCCCCCCEeEeeCCCCCC
Confidence 6 47663 24568999999994
No 13
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=20.23 E-value=49 Score=21.00 Aligned_cols=20 Identities=30% Similarity=0.878 Sum_probs=14.7
Q ss_pred ccccccc-cCCccccccCCCcc
Q psy12449 56 CQTCQGS-LHEQVICTSRDCPI 76 (102)
Q Consensus 56 Cq~C~gs-~~~~v~C~s~DCPV 76 (102)
| .|... .++-|.|++-|||+
T Consensus 29 C-iC~~~~~g~MI~CD~c~C~~ 49 (90)
T 2jmi_A 29 C-FCRNVSYGPMVACDNPACPF 49 (90)
T ss_dssp S-TTTCCCSSSEECCCSSSCSC
T ss_pred E-EeCCCCCCCEEEecCCCCcc
Confidence 6 67653 34568999999995
Done!