RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12449
         (102 letters)



>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage
           RB69 [TaxId: 12353]}
          Length = 528

 Score = 41.9 bits (97), Expect = 3e-06
 Identities = 15/69 (21%), Positives = 24/69 (34%)

Query: 1   MVKFGTKELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQCQTCQ 60
           + K   K L E +   +  +      Q+  K+  NS+YG  G    +          T  
Sbjct: 155 IKKLSAKSLNEMLFRAQRTEVAGMTAQINRKLLINSLYGALGNVWFRYYDLRNATAITTF 214

Query: 61  GSLHEQVIC 69
           G +  Q I 
Sbjct: 215 GQMALQWIE 223


>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage
           phi-29 [TaxId: 10756]}
          Length = 388

 Score = 31.0 bits (69), Expect = 0.015
 Identities = 6/37 (16%), Positives = 10/37 (27%)

Query: 14  TLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKLPC 50
                K       +   K+  NS+YG   +       
Sbjct: 179 KWTYIKTTSEGAIKQLAKLMLNSLYGKFASNPDVTGK 215


>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 324

 Score = 26.1 bits (57), Expect = 0.71
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 6/66 (9%)

Query: 35  NSVYGFTGAQVGKLPCQLWTQCQTCQGSLH------EQVICTSRDCPIFYMRKKVQIELI 88
           N +YGF G    K   Q++         L        +V+                I  I
Sbjct: 135 NQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKI 194

Query: 89  SQDQII 94
            +++  
Sbjct: 195 ERNRQP 200


>d2ebfx1 a.296.1.1 (X:575-874) Dermonecrotic toxin, ToxA
           {Pasteurella multocida [TaxId: 747]}
          Length = 300

 Score = 25.3 bits (55), Expect = 1.4
 Identities = 5/42 (11%), Positives = 14/42 (33%)

Query: 7   KELKEAMTLDEFKKKVLDGRQLALKISANSVYGFTGAQVGKL 48
             L+E+ +     K  +    L +  S   ++        ++
Sbjct: 205 GLLRESQSKGMLSKCRIIENSLYIGHSYEEMFYSISPYSNQV 246


>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 259

 Score = 25.2 bits (53), Expect = 1.9
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 37 VYGFTGAQVGKLPCQLWTQCQTCQGSL-HEQVICTSRDCPIFYMRKKVQI 85
          + G + A +   P Q++       G+L +E  + T+           + +
Sbjct: 14 IIGGSDADIKNFPWQVFFDNPWAGGALINEYWVLTAAHVVEGNREPTMYV 63


>d1qhda2 b.19.1.1 (A:149-332) vp6, the major capsid protein of group
           A rotavirus {Bovine rotavirus [TaxId: 10927]}
          Length = 184

 Score = 24.5 bits (53), Expect = 3.0
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 75  PIFYMRKKVQIELISQDQII----QRFGTIA 101
           P+      V+IE +   QII     RFGTI 
Sbjct: 103 PVILRPNNVEIEFLLNGQIINTYQARFGTII 133


>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
          (Rhodosporidium toruloides) [TaxId: 5286]}
          Length = 678

 Score = 24.2 bits (52), Expect = 3.6
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 16 DEFKKKVLDGRQLALKISANSVYGF-TGAQVGKL 48
          DE + K+    +      + SVYG  TG   G  
Sbjct: 50 DEIRSKIDKSVEFLRSQLSMSVYGVTTG--FGGS 81


>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum
          aestivum) [TaxId: 4565]}
          Length = 381

 Score = 24.2 bits (51), Expect = 4.0
 Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 2/23 (8%)

Query: 52 LWTQCQTCQGSLHEQVICTSRDC 74
          +W+ C   Q      + C+S  C
Sbjct: 35 VWSTCDGGQPPAE--IPCSSPTC 55


>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella
          decora) [TaxId: 6405]}
          Length = 39

 Score = 22.3 bits (47), Expect = 4.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 59 CQGSLHEQVICTSRDCP 75
          CQG   E+ +C   +CP
Sbjct: 7  CQGDDQEKCLCNKDECP 23


>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
           sapiens), beta isoform [TaxId: 9606]}
          Length = 294

 Score = 23.5 bits (50), Expect = 6.7
 Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 9/106 (8%)

Query: 1   MVKFGTKELKEAMTLDEFK----KKVLDGRQLALKISANSVYGFTGAQVGKLPCQLWTQC 56
            V  G + L+    L  +K    +     R      S N +YGF      +   +LW   
Sbjct: 88  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 147

Query: 57  QTCQGSLHEQVICTSRDCPIFYMRKKVQIELISQDQI--IQRFGTI 100
             C   L    I    D  IF     +  +L S +QI  I R   +
Sbjct: 148 TDCFNCLP---IAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDV 190


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0476    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,195
Number of extensions: 15270
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 18
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)