BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12450
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/119 (65%), Positives = 95/119 (79%), Gaps = 4/119 (3%)
Query: 46 KNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLTP 105
K FI+P+Y ++Q+EGATVIEPK+GYYADPI+TLDF+SLYPSIMMAHNLCYTTL+
Sbjct: 550 KGFIMPSYTSQGSDEQYEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLG 609
Query: 106 QTITKLE----LTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETD 160
T KL L DQ +TP N+F+KS +R+GLLPEILE+LL+ARK+AKNDLK ETD
Sbjct: 610 GTREKLRQQENLQDDQVERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLKVETD 668
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAVT 44
G+ETVRRDNSPLVAN++N+CLQKLLI RDPDGAV
Sbjct: 816 GIETVRRDNSPLVANLMNSCLQKLLIERDPDGAVA 850
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1
PE=1 SV=2
Length = 1107
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 95/123 (77%), Gaps = 2/123 (1%)
Query: 45 QKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLT 104
+ ++P GED + GATVIEP KGYY PIATLDFSSLYPSIMMAHNLCYTTLL
Sbjct: 565 HEGLLMPVVKSEGGED-YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 623
Query: 105 PQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDEL-T 163
P T KL LT DQ+ +TP G+ F+K+S+RKGLLP+ILENLLSARK+AK +L KETD L
Sbjct: 624 PGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRR 683
Query: 164 QVL 166
QVL
Sbjct: 684 QVL 686
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAVTQKNFII 50
GLE VRRDN PLVAN++ L++LLI+RDP+GAV +I
Sbjct: 828 GLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQDVI 868
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 95/123 (77%), Gaps = 2/123 (1%)
Query: 45 QKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLT 104
++ ++P GED + GATVIEP KGYY PIATLDFSSLYPSIMMAHNLCYTTLL
Sbjct: 564 RQGLLMPVVKTEGGED-YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 622
Query: 105 PQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDEL-T 163
P KL LT DQ+ KTP G+ F+K+S+RKGLLP+ILENLLSARK+AK +L KETD L
Sbjct: 623 PGAAQKLGLTEDQFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAKETDPLRR 682
Query: 164 QVL 166
QVL
Sbjct: 683 QVL 685
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAVTQKNFII 50
GLE VRRDN PLVAN++ L++LLI+RDP GAV +I
Sbjct: 827 GLEAVRRDNCPLVANLVTASLRRLLIDRDPSGAVAHAQDVI 867
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 95/123 (77%), Gaps = 2/123 (1%)
Query: 45 QKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLT 104
++ ++P GED + GATVIEP KGYY PIATLDFSSLYPSIMMAHNLCYTTLL
Sbjct: 561 RQGLLMPVVKTEGGED-YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 619
Query: 105 PQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDEL-T 163
P KL L PD++ KTP G+ F+KSS+RKGLLP+ILENLLSARK+AK +L +ETD L
Sbjct: 620 PGAAQKLGLKPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRR 679
Query: 164 QVL 166
QVL
Sbjct: 680 QVL 682
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAVTQKNFII 50
GLE VRRDN PLVAN++ + L+++L++RDPDGAV +I
Sbjct: 824 GLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKDVI 864
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 91/116 (78%)
Query: 45 QKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLT 104
Q++ +IP +++EGATVIEP++GYY PIATLDFSSLYPSIMMAHNLCYTTLL
Sbjct: 499 QEDIVIPNLKSEGSNEEYEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLN 558
Query: 105 PQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETD 160
+I LT D Y+KTP G++F+ S+LRKG+LP IL+ LL+ARK+AK DLKKETD
Sbjct: 559 KNSIKAFGLTEDDYTKTPNGDYFVHSNLRKGILPTILDELLTARKKAKADLKKETD 614
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRD 38
G+ETVRRDN LV N+I L+ +L RD
Sbjct: 762 GIETVRRDNCRLVQNVITKVLEFILEERD 790
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1
PE=1 SV=2
Length = 1105
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 90/111 (81%), Gaps = 1/111 (0%)
Query: 57 QGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLTPQTITKLELTPD 116
+G + + GATVIEP KGYY PIATLDFSSLYPSIMMAHNLCYTTLL P KL L PD
Sbjct: 574 EGSEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPD 633
Query: 117 QYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDEL-TQVL 166
++ KTP G+ F+KSS+RKGLLP+ILENLLSARK+AK +L +ETD L QVL
Sbjct: 634 EFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVL 684
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAVTQKNFII 50
GLE VRRDN PLVAN++ + L+++L++RDPDGAV +I
Sbjct: 826 GLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKDVI 866
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus
GN=Pold1 PE=2 SV=1
Length = 1103
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 95/123 (77%), Gaps = 2/123 (1%)
Query: 45 QKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLT 104
++ ++P GED + GATVIEP KGYY PIATLDFSSLYPSIMMAHNLCYTTLL
Sbjct: 561 REGLLMPVVKTEGGED-YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLR 619
Query: 105 PQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDEL-T 163
P KL L PD++ KTP G+ F+K+S+RKGLLP+ILENLLSARK+AK +L +ETD L
Sbjct: 620 PGAAQKLGLKPDEFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQETDPLRR 679
Query: 164 QVL 166
QVL
Sbjct: 680 QVL 682
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAVTQKNFII 50
GLE VRRDN PLVAN++ + L+++L++RDPDGAV +I
Sbjct: 824 GLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKDVI 864
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 45 QKNFIIPTYHG-GQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLL 103
QKN +IP G G+D FEGATV+E + G+Y PIATLDF+SLYPSIMMA+NLCY TL+
Sbjct: 569 QKNLVIPNIKGQASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLV 628
Query: 104 TPQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELT 163
P+ KL L P+ +KTP G F+K ++KG+LPEILE LL+ARK+AK DLK+ D
Sbjct: 629 PPEDARKLNLPPESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFE 688
Query: 164 QVL 166
+ +
Sbjct: 689 RAV 691
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAV 43
G+ETVRRDN LV N++ CL K+L++RD GAV
Sbjct: 833 GIETVRRDNCLLVKNLVTECLHKILVDRDVPGAV 866
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 91/123 (73%), Gaps = 1/123 (0%)
Query: 45 QKNFIIP-TYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLL 103
QKN ++P G + +EGATV+E + G+Y PIATLDF+SLYPSIMMA+NLCY TL+
Sbjct: 561 QKNLVLPNAKQSGSEQGTYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCTLV 620
Query: 104 TPQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELT 163
TP+ + KL L P+ +KTP G F+K +L+KG+LPEILE LL+ARK+AK DLK+ D L
Sbjct: 621 TPEDVRKLNLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRAKADLKEAKDPLE 680
Query: 164 QVL 166
+ +
Sbjct: 681 KAV 683
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAV 43
G+ETVRRDN LV N++ L K+LI+RD GA
Sbjct: 825 GIETVRRDNCLLVKNLVTESLNKILIDRDVPGAA 858
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 45 QKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLT 104
Q + ++P ++Q+EGATVIEP KGYY PIATLDFSSLYPSIM AHNLCYTTLL
Sbjct: 549 QHDLVVPNIRVNGTDEQYEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLD 608
Query: 105 PQTITKLELTPD-QYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELT 163
T L+L D YS TP G++F+K +RKGLLP IL +LL+ARK+AK DLKKETD
Sbjct: 609 SNTAELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFK 668
Query: 164 QVL 166
+ +
Sbjct: 669 KAV 671
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 29/33 (87%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGA 42
G+ETVRRDN PLV+ +I+T L+K+LI++D +GA
Sbjct: 813 GIETVRRDNCPLVSYVIDTALRKMLIDQDVEGA 845
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 92/125 (73%), Gaps = 7/125 (5%)
Query: 45 QKNFIIPTYHGGQGEDQ-FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLL 103
Q NF +P G+ + +EGATVI+P +G+Y +PIATLDF+SLYPSIM+AHNLCYTTLL
Sbjct: 535 QNNFFLPVIEANSGDGEGYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLL 594
Query: 104 -TPQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDEL 162
+PQ + + Y +TP G +F S R+GLLPEILE++L+ARK+AKND+K E DE
Sbjct: 595 KSPQGVEN-----EDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEF 649
Query: 163 TQVLY 167
+++Y
Sbjct: 650 KRMVY 654
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAV 43
GLETVRRDN PLVA ++ CL+KLLI RD A+
Sbjct: 798 GLETVRRDNCPLVAKVLGVCLEKLLIERDQQSAL 831
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
Query: 45 QKNFIIP-TYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLL 103
QKN +IP G + FEGATV+E + G+Y PIATLDF+SLYPSIMMA+NLCY TL+
Sbjct: 526 QKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLV 585
Query: 104 TPQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELT 163
P+ KL + P+ ++TP G F+KS+L+KG+LPEILE LL+ARK+AK DLK+ D L
Sbjct: 586 IPEDARKLNIPPESVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLE 645
Query: 164 QVL 166
+ +
Sbjct: 646 KAV 648
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAV 43
G+ETVRRDN LV N++N CL K+LI+RD GAV
Sbjct: 790 GIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAV 823
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 92/122 (75%), Gaps = 4/122 (3%)
Query: 46 KNFIIPTYH-GGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLT 104
+NF+IPTY G+GE +F+GA VIEP G+Y PIATLDF+SLYPSIMMAHNLCY+TLL+
Sbjct: 571 ENFLIPTYKVTGKGE-KFQGAIVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLLS 629
Query: 105 PQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQ 164
+ K L P+ Y+ TP G+ F+KS +KGLLP ILE LLSARK+AK++LK E D +
Sbjct: 630 AEEAKK--LPPEIYTTTPFGDHFIKSDTKKGLLPRILEELLSARKKAKDELKNEKDPFKR 687
Query: 165 VL 166
+
Sbjct: 688 AV 689
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGA 42
GLE VRRD LV N+++T L+K+LI +D A
Sbjct: 831 GLEMVRRDTCLLVRNVVSTILKKILIEKDLKSA 863
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 49 IIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLTPQTI 108
+IP +DQ+EGATVIEP +GYY PIATLDF+SLYPSIMMAHNLCYTTL T+
Sbjct: 574 VIPNMQSQASDDQYEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATV 633
Query: 109 TKLELTPDQ-YSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETD 160
+L L D+ Y TP G++F+ + R+G+LP IL+ L+SARK+AK DL+ E D
Sbjct: 634 ERLNLKIDEDYVITPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEKD 686
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAVT 44
GL +VRRD+ LV+ ++N L+K+LI R+ DGA+
Sbjct: 834 GLASVRRDSCSLVSIVMNKVLKKILIERNVDGALA 868
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 84/123 (68%), Gaps = 4/123 (3%)
Query: 47 NFIIP-TYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLTP 105
N++IP TY +++EGATV+EP KGYY +PI+TLDF+SLYPSIM+AHNLCY+TL+
Sbjct: 561 NYVIPSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKS 620
Query: 106 QTITKLELTPDQYSKTPCGNF--FLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELT 163
+L D + N F+K +++KG+LP I+E L+ ARK+ K +K E + +T
Sbjct: 621 NHEVS-DLQNDDITTIQGKNNLKFVKKNVKKGILPLIVEELIEARKKVKLLIKNEKNNIT 679
Query: 164 QVL 166
+++
Sbjct: 680 KMV 682
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAV 43
G+ETVRRD L+ M+ T L KLLI ++ + A+
Sbjct: 825 GIETVRRDFCILIQQMMETVLNKLLIEKNLNSAI 858
>sp|Q9DKT8|DPOL_ELHVK DNA polymerase catalytic subunit OS=Elephantid herpesvirus 1
(isolate Asian elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1041
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 41 GAVTQKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYT 100
A ++ IIP+ GED ++GATV+EPK G+Y P+A DF+SLYPSI+ A+NLCY
Sbjct: 564 AAARREGLIIPSIDEA-GEDTYQGATVLEPKTGFYNTPVAVFDFASLYPSIIQAYNLCYC 622
Query: 101 TLLTPQTITKLELTPDQYSKTPCGNF--FLKSSLRKGLLPEILENLLSARKQAKNDLKKE 158
TL+T + L T G F+K +RK +L ++L + L+ RK + LK
Sbjct: 623 TLITDNYVASLREEDITMVTTNTGRVHRFVKPHVRKSILSQLLTSWLAERKAVREKLKHC 682
Query: 159 TDELTQVL 166
D L Q+L
Sbjct: 683 KDPLMQIL 690
>sp|P08546|DPOL_HCMVA DNA polymerase OS=Human cytomegalovirus (strain AD169) GN=UL54 PE=1
SV=2
Length = 1242
Score = 92.0 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)
Query: 55 GGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLTPQTITKLELT 114
GG ++GATV EP+ GYY DP+A DF+SLYPSI+MAHNLCY+TLL P ++
Sbjct: 689 GGTAAVSYQGATVFEPEVGYYNDPVAVFDFASLYPSIIMAHNLCYSTLLVPGGEYPVD-P 747
Query: 115 PDQYSKT---PCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
D YS T + F+++S+R +L E+L +S R+ + +++ D + ++L
Sbjct: 748 ADVYSVTLENGVTHRFVRASVRVSVLSELLNKWVSQRRAVRECMRECQDPVRRML 802
>sp|Q6SW77|DPOL_HCMVM DNA polymerase catalytic subunit OS=Human cytomegalovirus (strain
Merlin) GN=UL54 PE=3 SV=1
Length = 1242
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 4/115 (3%)
Query: 55 GGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLTPQTITKLELT 114
GG ++GATV EP+ GYY DP+A DF+SLYPSI+MAHNLCY+TLL P ++
Sbjct: 689 GGTAAVSYQGATVFEPEVGYYNDPVAVFDFASLYPSIIMAHNLCYSTLLVPGGEYPVD-P 747
Query: 115 PDQYSKT---PCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
D YS T + F+++S+R +L E+L +S R+ + +++ D + ++L
Sbjct: 748 ADVYSVTLENGVTHRFVRASVRVSVLSELLNKWVSQRRAVRECMRECQDPVRRML 802
>sp|O71121|DPOL_RHCM6 DNA polymerase OS=Rhesus cytomegalovirus (strain 68-1) GN=UL54 PE=3
SV=1
Length = 1035
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 18/133 (13%)
Query: 46 KNFIIPTYHGGQGEDQ-----FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYT 100
++FI+P + G + ++GATV EP+ GYY+DP+ DF+SLYPSI+MAHNLCY+
Sbjct: 549 RDFIMPNHKGADNSSEPTDVSYQGATVFEPEVGYYSDPVVVFDFASLYPSIIMAHNLCYS 608
Query: 101 TLLTP-------QTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKN 153
T + P + +EL ++ F+K+++R +L E+L +S R+ +
Sbjct: 609 TFVAPGGESPPESDVLTVEL------ESGLSYRFVKNTVRNSVLSELLTKWVSQRRAVRE 662
Query: 154 DLKKETDELTQVL 166
++ D + ++L
Sbjct: 663 TMRSCHDPVKRML 675
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 47 NFIIPT----YHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL 102
N I+P+ ++ G+ ++GATV+EPK GYYA P DF SLYPSIMMAHNLCY+TL
Sbjct: 531 NMILPSMNTNFNKGKENVGYKGATVLEPKIGYYATPTVVFDFQSLYPSIMMAHNLCYSTL 590
Query: 103 LTPQTITKLELTPDQYSKT---PCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKET 159
+ + + L D P + F+K ++R+ +L +L+ L RK+ K +K
Sbjct: 591 VVDENAV-IGLHADDILTVHVGPVTHRFVKKTVRESILASLLKKWLDKRKEVKMQMKMCN 649
Query: 160 DELTQVL 166
+ + ++L
Sbjct: 650 NPVMEML 656
>sp|P28857|DPOL_HHV6U DNA polymerase OS=Human herpesvirus 6A (strain Uganda-1102) GN=U38
PE=3 SV=1
Length = 1012
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 20/134 (14%)
Query: 45 QKNFIIPTY---HGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTT 101
++N I+P+ H QG ++GATV+EPK GYYA P DF SLYPSIMMAHNLCY+T
Sbjct: 532 RRNMILPSMVSSHNRQGIG-YKGATVLEPKTGYYAVPTVVFDFQSLYPSIMMAHNLCYST 590
Query: 102 L---------LTPQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAK 152
L L+ I ++L + + F+K +R+ +L +L++ L+ R++ K
Sbjct: 591 LVLDERQIAGLSESDILTVKLGDETHR-------FVKPCIRESVLGSLLKDWLAKRREVK 643
Query: 153 NDLKKETDELTQVL 166
+++ +D + ++L
Sbjct: 644 AEMQNCSDPMMKLL 657
>sp|Q9QJ32|DPOL_HHV6Z DNA polymerase catalytic subunit OS=Human herpesvirus 6B (strain
Z29) GN=U38 PE=3 SV=1
Length = 1012
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 79/134 (58%), Gaps = 20/134 (14%)
Query: 45 QKNFIIPTY---HGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTT 101
++N I+P+ H QG ++GATV+EPK GYYA P DF SLYPSIMMAHNLCY+T
Sbjct: 532 RRNMILPSMVSSHNRQGIG-YKGATVLEPKTGYYAVPTVVFDFQSLYPSIMMAHNLCYST 590
Query: 102 L---------LTPQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAK 152
L L+ I ++L + + F+K +R+ +L +L++ L+ R++ K
Sbjct: 591 LVLDERQIAGLSESDILTVKLGDETHR-------FVKPCVRESVLGSLLKDWLAKRREVK 643
Query: 153 NDLKKETDELTQVL 166
+++ +D + ++L
Sbjct: 644 AEMQNCSDPMMKLL 657
>sp|P89453|DPOL_HHV2H DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain
HG52) GN=UL30 PE=3 SV=1
Length = 1240
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 67/104 (64%), Gaps = 5/104 (4%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL-LTPQTITKLELTPDQYSK 120
++GA V++P G++ DP+ DF+SLYPSI+ AHNLC++TL L P+ + LE D Y +
Sbjct: 701 YQGARVLDPTSGFHVDPVVVFDFASLYPSIIQAHNLCFSTLSLRPEAVAHLEADRD-YLE 759
Query: 121 TPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDE 161
G FF+K+ +R+ LL +L + L+ RKQ ++ + + T E
Sbjct: 760 IEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSTPE 803
>sp|P07918|DPOL_HHV21 DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain
186) GN=UL30 PE=3 SV=1
Length = 1240
Score = 83.6 bits (205), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 5/104 (4%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL-LTPQTITKLELTPDQYSK 120
++GA V++P G++ DP+ DF+SLYPSI+ AHNLC++TL L P+ + LE D Y +
Sbjct: 701 YQGARVLDPTSGFHVDPVVVFDFASLYPSIIQAHNLCFSTLSLRPEAVAHLEADRD-YLE 759
Query: 121 TPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDE 161
G FF+K+ +R+ LL +L + L+ RKQ ++ + + E
Sbjct: 760 IEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSPPE 803
>sp|Q4JQU7|DPOL_VZVO DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Oka vaccine) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 63/95 (66%), Gaps = 6/95 (6%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL-LTPQTITKLELTPDQYSK 120
++GA V +P G+Y DP+ LDF+SLYPSI+ AHNLC+TTL L +T+ + L P Y+
Sbjct: 661 YKGARVFDPDTGFYIDPVVVLDFASLYPSIIQAHNLCFTTLTLNFETVKR--LNPSDYAT 718
Query: 121 TPCGN---FFLKSSLRKGLLPEILENLLSARKQAK 152
G FF++S++R+ LL +L++ L+ RK +
Sbjct: 719 FTVGGKRLFFVRSNVRESLLGVLLKDWLAMRKAIR 753
>sp|P09252|DPOL_VZVD DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Dumas) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 63/95 (66%), Gaps = 6/95 (6%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL-LTPQTITKLELTPDQYSK 120
++GA V +P G+Y DP+ LDF+SLYPSI+ AHNLC+TTL L +T+ + L P Y+
Sbjct: 661 YKGARVFDPDTGFYIDPVVVLDFASLYPSIIQAHNLCFTTLTLNFETVKR--LNPSDYAT 718
Query: 121 TPCGN---FFLKSSLRKGLLPEILENLLSARKQAK 152
G FF++S++R+ LL +L++ L+ RK +
Sbjct: 719 FTVGGKRLFFVRSNVRESLLGVLLKDWLAMRKAIR 753
>sp|P03198|DPOL_EBVB9 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain
B95-8) GN=BALF5 PE=1 SV=1
Length = 1015
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 41 GAVTQKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYT 100
A ++NFI+P D ++GATVI+P G+Y P+ +DF+SLYPSI+ AHNLCY+
Sbjct: 543 AAAQKENFILPM-PSASDRDGYQGATVIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYS 601
Query: 101 TLLTPQTITKLE-LTP----DQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDL 155
T++TP +L L P + + T F+K + + L +L + L+ RK K L
Sbjct: 602 TMITPGEEHRLAGLRPGEDYESFRLTGGVYHFVKKHVHESFLASLLTSWLAKRKAIKKLL 661
Query: 156 KKETD 160
D
Sbjct: 662 AACED 666
>sp|Q1HVC1|DPOL_EBVA8 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain
AG876) GN=BALF5 PE=3 SV=1
Length = 1015
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 41 GAVTQKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYT 100
A ++NFI+P D ++GATVI+P G+Y P+ +DF+SLYPSI+ AHNLCY+
Sbjct: 543 AAAQKENFILPM-PSASDRDGYQGATVIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYS 601
Query: 101 TLLTPQTITKLE-LTP----DQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDL 155
T++TP +L L P + + T F+K + + L +L + L+ RK K L
Sbjct: 602 TMITPGEEHRLAGLRPGEDYESFRLTGGVYHFVKKHVHESFLASLLTSWLAKRKAIKKLL 661
Query: 156 KKETD 160
D
Sbjct: 662 AACED 666
>sp|Q3KSP1|DPOL_EBVG DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain GD1)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 41 GAVTQKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYT 100
A ++NFI+P D ++GATVI+P G+Y P+ +DF+SLYPSI+ AHNLCY+
Sbjct: 543 AAAQKENFILPM-PSASDRDGYQGATVIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYS 601
Query: 101 TLLTPQTITKLE-LTP----DQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDL 155
T++TP +L L P + + T F+K + + L +L + L+ RK K L
Sbjct: 602 TMITPGEEHRLAGLRPGEDYESFRLTGGVYHFVKKHVHESFLASLLTSWLAKRKAIKKLL 661
Query: 156 KKETD 160
D
Sbjct: 662 AACED 666
>sp|O36363|DPOL_ALHV1 DNA polymerase catalytic subunit OS=Alcelaphine herpesvirus 1
(strain C500) GN=9 PE=3 SV=1
Length = 1026
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
Query: 41 GAVTQKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYT 100
A ++++I+P G E ++GATVI P G+Y P+ +DF+SLYPSI+ AHNLCY+
Sbjct: 561 AAAQERDYILPMPVTGSQEG-YQGATVINPISGFYNTPVLVVDFASLYPSIIQAHNLCYS 619
Query: 101 TLLTPQTITKL-ELTPDQYSKTPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLK 156
TL+ Q + K LT + Y F+K + LL +L+ L+ RK K +L+
Sbjct: 620 TLIKQQDLPKFTNLTANDYETFMISGGPVHFVKKHKTESLLASLLKTWLAKRKSIKKELE 679
Query: 157 KETD 160
+ D
Sbjct: 680 QCQD 683
>sp|P04292|DPOL_HHV1K DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
KOS) GN=UL30 PE=1 SV=1
Length = 1235
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 5/109 (4%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL-LTPQTITKLELTPDQYSK 120
++GA V++P G++ +P+ DF+SLYPSI+ AHNLC++TL L + LE D Y +
Sbjct: 696 YQGAKVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKD-YLE 754
Query: 121 TPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
G FF+K+ +R+ LL +L + L+ RKQ ++ + + + E +L
Sbjct: 755 IEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAVLL 803
>sp|P07917|DPOL_HHV1A DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
Angelotti) GN=UL30 PE=1 SV=1
Length = 1235
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 5/109 (4%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL-LTPQTITKLELTPDQYSK 120
++GA V++P G++ +P+ DF+SLYPSI+ AHNLC++TL L + LE D Y +
Sbjct: 696 YQGARVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKD-YLE 754
Query: 121 TPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
G FF+K+ +R+ LL +L + L+ RKQ ++ + + + E +L
Sbjct: 755 IEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAVLL 803
>sp|P04293|DPOL_HHV11 DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain 17)
GN=UL30 PE=1 SV=2
Length = 1235
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 5/109 (4%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL-LTPQTITKLELTPDQYSK 120
++GA V++P G++ +P+ DF+SLYPSI+ AHNLC++TL L + LE D Y +
Sbjct: 696 YQGARVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKD-YLE 754
Query: 121 TPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
G FF+K+ +R+ LL +L + L+ RKQ ++ + + + E +L
Sbjct: 755 IEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAVLL 803
>sp|P09854|DPOL_HHV1S DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
SC16) GN=UL30 PE=3 SV=1
Length = 1235
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 5/109 (4%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL-LTPQTITKLELTPDQYSK 120
++GA V++P G++ +P+ DF+SLYPSI+ AHNLC++TL L + LE D Y +
Sbjct: 696 YQGARVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKD-YLE 754
Query: 121 TPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
G FF+K+ +R+ LL +L + L+ RKQ ++ + + + E +L
Sbjct: 755 IEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAVLL 803
>sp|P30321|DPOL_PBCV1 DNA polymerase OS=Paramecium bursaria Chlorella virus 1 GN=DPO PE=3
SV=2
Length = 913
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 41 GAVTQKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYT 100
G Q N+ IP E ++EGATV++ KKG Y PIA LDF+SLYPSI+ AHN+
Sbjct: 443 GKARQMNYAIPDDKAWATEGKYEGATVLDAKKGAYFTPIAALDFASLYPSIIRAHNMSPE 502
Query: 101 TLLTPQTITKLELTPDQYSKTPCGNFFL-----KSSLRKGLLPEILENLLSARKQAKNDL 155
TL+ + + +T G F ++ +G++P +L++L RK AK +
Sbjct: 503 TLVMEKRFENVPGVEYYEIETGLGKFKYAQKNDETGEGQGVVPALLDDLAKFRKLAKKHM 562
Query: 156 ---KKETDELTQVLY 167
K+ D+ + LY
Sbjct: 563 AEAKRNGDDFKEALY 577
>sp|P30320|DPOL_PBCVN DNA polymerase OS=Paramecium bursaria Chlorella virus NY2A GN=DPO
PE=3 SV=1
Length = 913
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 41 GAVTQKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYT 100
G Q N+ IP + ++EGATV++ KKG Y IA LDF+SLYPSI+ AHN+
Sbjct: 443 GKARQMNYAIPDDKMWTVDGKYEGATVLDAKKGAYFTSIAALDFASLYPSIIRAHNMSPE 502
Query: 101 TLLTPQTITKLELTPDQYSKTPCGNFFL-----KSSLRKGLLPEILENLLSARKQAKNDL 155
TL+ + L +T G F ++ +G++P +L++L RKQAK +
Sbjct: 503 TLVMDKRFENLPGIEYYEIETGLGTFKYPQKNDETGEGQGVVPALLDDLAKFRKQAKKHM 562
Query: 156 ---KKETDELTQVLY 167
KK DE + LY
Sbjct: 563 AEAKKNDDEFREALY 577
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRDPDGAVTQ 45
GL VRRD SP+ ++ L +L +D AVT+
Sbjct: 716 GLALVRRDFSPITREILKESLDTILFKKDTPTAVTE 751
>sp|Q69025|DPOL_GPCMV DNA polymerase OS=Guinea pig cytomegalovirus (strain 22122) PE=3
SV=2
Length = 1117
Score = 76.3 bits (186), Expect = 9e-14, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 17/120 (14%)
Query: 55 GGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL--------LTPQ 106
GG G ++GATV+EP G+Y P+A DF+SLYPSI+M HNLCY+T L+
Sbjct: 621 GGVG---YQGATVLEPDVGFYDTPVAVFDFASLYPSIIMRHNLCYSTYLPLGRDDGLSDD 677
Query: 107 TITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
+ LE T G F++ +RK +L E+L L+ RK + L + DE+ +++
Sbjct: 678 DVFLLEFD----DGTRYG--FVREHVRKSILGELLARWLAKRKSVRKVLAECQDEVEKLI 731
>sp|Q9E6N9|DPOL_GAHVM DNA polymerase catalytic subunit OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV043 PE=3 SV=1
Length = 1220
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLTPQT-ITKLELTPDQYSK 120
++GA V++P G++ DP+ DF+SLYPSI+ AHNLC+TTL+ T ++ L D
Sbjct: 677 YQGAKVLDPISGFHVDPVMVFDFASLYPSIIQAHNLCFTTLVHDDTNLSNLRPQDDYLEI 736
Query: 121 TPCGNF--FLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
G F+K +R+ LL +L++ L+ RK + + + DE+ +L
Sbjct: 737 NVQGKLLRFVKPHIRESLLAILLKDWLAMRKAIRAKIPESCDEIAVLL 784
>sp|P28858|DPOL_EHV1B DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
Ab4p) GN=30 PE=3 SV=1
Length = 1220
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL-LTPQTITKLELTPDQYSK 120
++GA V++P G++ DP+ DF+SLYPSI+ AHNLC+TTL L + L+ + D YS
Sbjct: 697 YQGAKVLDPVSGFHVDPVVVFDFASLYPSIIQAHNLCFTTLALDEVDLAGLQPSVD-YST 755
Query: 121 TPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
G+ FF+ + +R+ LL +L + L+ RK + + T E +L
Sbjct: 756 FEVGDQKLFFVHAHIRESLLGILLRDWLAMRKAVRARIPTSTPEEAVLL 804
>sp|P27172|DPOL_MUHVS DNA polymerase OS=Murid herpesvirus 1 (strain Smith) GN=UL54 PE=3
SV=1
Length = 1097
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 73/112 (65%), Gaps = 14/112 (12%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLL---TPQT----ITKLELT 114
++GATV+EP+ G++ P+ DF+SLYPSI+M++NLCY+TLL +P+ + ++E+
Sbjct: 603 YQGATVLEPECGFHHVPVCVFDFASLYPSIIMSNNLCYSTLLVEGSPEVPEKDVLRVEIG 662
Query: 115 PDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
DQ + F++ ++ + LL E+L L+ RK + +K+ T+E+ +++
Sbjct: 663 -DQCHR------FVRENVHRSLLAELLVRWLTQRKLVREAMKQCTNEMQRMI 707
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 20/141 (14%)
Query: 46 KNFIIPTYHGGQGEDQ--FEG-ATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL 102
+N+I P+ Q +Q E V+EPK Y +P+ LDF SLYPSI++A+NLCY+T
Sbjct: 915 ENYIFPSPSAKQVAEQNALEALPLVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYSTC 974
Query: 103 LTPQTITK----------------LELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLS 146
L P I + L + +P G ++K ++RK LL ++LE L+
Sbjct: 975 LGPVKIVNGKVKLGFMFHSSNPNIVNLIKNDVYISPNGYAYVKENVRKSLLAKMLEELIE 1034
Query: 147 ARKQAKNDLKK-ETDELTQVL 166
R K +K ++D + +VL
Sbjct: 1035 TRNMVKRGMKDCDSDYVNKVL 1055
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 10 GLETVRRDNSPLVANMINTCLQKLLINRD 38
G+ETVRRD +P+ ++ CL+ L +D
Sbjct: 1192 GIETVRRDGTPVQQQLLRRCLEILFKTKD 1220
>sp|Q6S6P1|DPOL_EHV1V DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
V592) GN=30 PE=3 SV=1
Length = 1220
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 62 FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLTPQTITKLELTPD-QYSK 120
++GA V++P G++ DP+ DF+SLYPSI+ AHNLC+TTL + + L P YS
Sbjct: 697 YQGAKVLDPVSGFHVDPVVVFDFASLYPSIIQAHNLCFTTLALDE-VDLAGLQPSVNYST 755
Query: 121 TPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDELTQVL 166
G+ FF+ + +R+ LL +L + L+ RK + + T E +L
Sbjct: 756 FEVGDQKLFFVHAHIRESLLGILLRDWLAMRKAVRARIPTSTPEEAVLL 804
>sp|Q6UDK1|DPOL_PSHV1 DNA polymerase catalytic subunit OS=Psittacid herpesvirus 1
(isolate Amazon parrot/-/97-0001/1997) GN=UL30 PE=3 SV=1
Length = 1081
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 48 FIIPTYHGGQGEDQ-----FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTL 102
F + G +D ++GA V++P G++ +P+ DF+SLYPSI+ ++NLCY+T+
Sbjct: 590 FTFSAHAAGDQDDGGRSVGYQGAKVLDPDVGFHVNPVMVFDFASLYPSIIQSNNLCYSTM 649
Query: 103 L-TPQTITKLELTPDQYSKTPCGN--FFLKSSLRKGLLPEILENLLSARKQAKNDLKKET 159
P I LE D G FF++ +R+ LL E+L + L+ RK + +
Sbjct: 650 THNPAAIAHLEEGTDYLRVEVQGRVFFFVREHVRRSLLAELLTDWLNMRKALRAQIPLAA 709
Query: 160 DELTQVL 166
E +VL
Sbjct: 710 TEDEKVL 716
>sp|Q85428|DPOL_RCMVM DNA polymerase OS=Rat cytomegalovirus (strain Maastricht) GN=UL54
PE=3 SV=2
Length = 1173
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 9/111 (8%)
Query: 56 GQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLL---TPQTITK-- 110
G ++GATV+ P+ GY+ +PI DF+SLYPSI+M++NLCY+TLL +P +
Sbjct: 623 ASGNVGYQGATVLAPECGYHHNPILVFDFASLYPSIIMSNNLCYSTLLVDGSPPVPDEDV 682
Query: 111 LELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQAKNDLKKETDE 161
LE+ + ++ F++ +R+ LL E+L L RK ++ +K DE
Sbjct: 683 LEVVVGEATRYR----FVREHVRRSLLAELLVRWLKQRKLVRDAMKACGDE 729
>sp|P24907|DPOL_SHV21 DNA polymerase OS=Saimiriine herpesvirus 2 (strain 11) GN=9 PE=3
SV=1
Length = 1009
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 41 GAVTQKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYT 100
A +N+I+P + D F+GATVI P G+Y + + +DF+SLYPSI+ AHNLCY+
Sbjct: 533 AAARAENYILPVSNDVNA-DGFQGATVINPIPGFYNNAVLVVDFASLYPSIIQAHNLCYS 591
Query: 101 TLLTPQTITKL-ELTPDQYSKTPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLK 156
TL+ + L Y + F+K ++ LL +L LS RK + L
Sbjct: 592 TLIPHHALHNYPHLKSSDYETFMLSSGPIHFVKKHIQASLLSRLLTVWLSKRKAIRQKLA 651
Query: 157 KETD 160
+ D
Sbjct: 652 ECED 655
>sp|Q9YUS2|DPOL_TUHV2 DNA polymerase OS=Tupaiid herpesvirus (strain 2) GN=DPOL PE=3 SV=1
Length = 1171
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 59 EDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLL--TPQTITKLELTPD 116
E ++GATV EP GY+ P+A DF+SLYPSI+MAHNLCY+T L P T + TP
Sbjct: 598 ETTYQGATVFEPTVGYHHAPVAVFDFASLYPSIIMAHNLCYSTWLRDDPGTPARPPETPA 657
Query: 117 QYSKTP 122
+ +TP
Sbjct: 658 RPPETP 663
>sp|P52367|DPOL_EHV2 DNA polymerase OS=Equine herpesvirus 2 (strain 86/87) GN=9 PE=3
SV=1
Length = 1008
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 45 QKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLT 104
++ +I+P E ++GATVI+P G+Y P+ +DF+SLYP+I+ AHNLCY+T++
Sbjct: 545 REGYILPVDRHADAEG-YQGATVIDPSPGFYNTPVLVVDFASLYPTIIQAHNLCYSTMIP 603
Query: 105 PQTIT-KLELTPDQYSKTPCGN---FFLKSSLRKGLLPEILENLLSARKQAKNDLKKETD 160
+ L P Y + F+K LL +L L+ RK + +L +D
Sbjct: 604 GDRLCLHPHLGPGDYETFELASGPVHFVKKHKAVSLLATLLNVWLAKRKAIRRELATVSD 663
Query: 161 ELTQVL 166
E + +
Sbjct: 664 EAVRTI 669
>sp|Q9YUS3|DPOL_TUHV1 DNA polymerase OS=Tupaiid herpesvirus 1 (strain 1) GN=DPOL PE=3
SV=1
Length = 1171
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 15/92 (16%)
Query: 46 KNFIIPTYHGGQGEDQ-------------FEGATVIEPKKGYYADPIATLDFSSLYPSIM 92
+ ++PT+ G ++GATV EP GY+ P+A DF+SLYPSI+
Sbjct: 572 RQMVVPTFRSGAQRGAATGAGGGGGEETTYQGATVFEPTVGYHHAPVAVFDFASLYPSII 631
Query: 93 MAHNLCYTTLL--TPQTITKLELTPDQYSKTP 122
MAHNLCY+T L P T + TP + +TP
Sbjct: 632 MAHNLCYSTWLRDDPGTPARPPETPARPPETP 663
>sp|P27727|DPOLA_TRYBB DNA polymerase alpha catalytic subunit OS=Trypanosoma brucei brucei
PE=3 SV=1
Length = 1339
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 56 GQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLLTPQTITKLEL-T 114
G+ + +++G V+EPK G Y++ I LDF+SLYPS++ N+CYTT+ + E+
Sbjct: 723 GKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQEFNVCYTTIDRDENTVSAEVPP 782
Query: 115 PDQYSKTPCGNFFLKS-SLRKGLLPEILENLLSARKQAKNDLKKETD 160
P+ C L S L K +LP+++ L+ +R++ K +K E D
Sbjct: 783 PESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREIKRMMKSEKD 829
>sp|Q9FHA3|DPOLA_ARATH DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana
GN=POLA PE=3 SV=2
Length = 1524
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 29/128 (22%)
Query: 33 LLINRDPD-GAVTQKNFIIPTYHGGQGEDQFEGATVIEPKKGYYADPIATLDFSSLYPSI 91
L + DP G+ T+K P Y GG V+EPK+G Y + LDF+SLYPSI
Sbjct: 879 LTLENDPSKGSKTKKG---PAYAGG---------LVLEPKRGLYDKYVLLLDFNSLYPSI 926
Query: 92 MMAHNLCYTTLLTPQTITKLELTPDQYSKTPCGNFFLKSSLRKGLLPEILENLLSARKQA 151
+ +N+C+TT+ P++ + P S+TP G+LP+++E+L+S RK
Sbjct: 927 IQEYNICFTTI--PRSEDGVPRLPS--SQTP------------GILPKLMEHLVSIRKSV 970
Query: 152 KNDLKKET 159
K +KKET
Sbjct: 971 KLKMKKET 978
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,277,223
Number of Sequences: 539616
Number of extensions: 2596600
Number of successful extensions: 6406
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6178
Number of HSP's gapped (non-prelim): 205
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)