RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12454
(113 letters)
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 139 bits (353), Expect = 1e-42
Identities = 46/113 (40%), Positives = 65/113 (57%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M + GKVALVTG A GIGRA+ E LL GAKV++ D N G ++ P +
Sbjct: 1 MAHMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKT 60
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELEVDVNLVGT 113
++ CDV D Q + F+ + G LDI++NNAG+ N++ WE + +NLV
Sbjct: 61 LFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSV 113
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 135 bits (342), Expect = 3e-41
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
MDL K + GIG EL+K K + LAE + +
Sbjct: 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE-LKAINPKVNITF 59
Query: 63 CPCDVT-DYPQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELEVDVNLVGT 113
DVT + ++ + +L +DI+IN AGI +D E + +N G
Sbjct: 60 HTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGL 111
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 122 bits (308), Expect = 4e-36
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 17/125 (13%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
MVM LK +V +VTG ++G+G A L + GA V D+ GE+ A + G
Sbjct: 1 MVMQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE----LGAA-V 55
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR------------FWELEVDV 108
+ DVT+ A Q+ G + ++N AG + V V
Sbjct: 56 RFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAV 115
Query: 109 NLVGT 113
NL+GT
Sbjct: 116 NLIGT 120
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 118 bits (299), Expect = 1e-34
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 19/126 (15%)
Query: 2 VMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAI 61
+KG VA++TGGA+G+G A E L+ GA + D+ +S GE A++ G +
Sbjct: 7 CRSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK----LGN-NCV 61
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR--------------FWELEVD 107
+ P DVT + A + K G +D+ +N AGI ++ +D
Sbjct: 62 FAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLD 121
Query: 108 VNLVGT 113
VNL+GT
Sbjct: 122 VNLMGT 127
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 117 bits (296), Expect = 4e-34
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M L GKVALV+GGA G+G ++ ++ GAKV DI D G+ +A + + A
Sbjct: 1 MSGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAA 55
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
Y DVT Q++ A + GGL +++NNAGI N W+ +DVNL G
Sbjct: 56 RYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTG 115
Query: 113 T 113
Sbjct: 116 V 116
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 117 bits (296), Expect = 4e-34
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 1 MVM-DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNR 59
M DL VA+VTGG++GIG A E LL+ GA V+ C + R ++ R
Sbjct: 1 MKPYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGAR 60
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLV 111
CDV D Q + + LG I++NNAG W E+ +
Sbjct: 61 LFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFF 120
Query: 112 GT 113
Sbjct: 121 SV 122
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 115 bits (291), Expect = 2e-33
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 11/122 (9%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M GKV LVTG IG A L + G +++ D+N E R K A
Sbjct: 1 MSKKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EA 58
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLV 111
CDVT ++ G +D + NNAG + + +N+
Sbjct: 59 RSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVT 118
Query: 112 GT 113
G
Sbjct: 119 GA 120
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 116 bits (292), Expect = 2e-33
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
GKV +VTGG GIG + GA+V ICD ++S G L ++ A
Sbjct: 3 TGTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP------GA 56
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLV 111
++ CDVT + T+++ G LD V+NNAG + +++NL+
Sbjct: 57 VFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLL 116
Query: 112 GT 113
GT
Sbjct: 117 GT 118
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 114 bits (289), Expect = 3e-33
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
+ L GK A++TG AGIG+ GA V + DIN + ++ + G +A
Sbjct: 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFA 64
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF-------WELEVDVNLVGT 113
C CD+T + + KLG +DI++NNAG + + ++N+
Sbjct: 65 CRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSF 122
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 115 bits (289), Expect = 5e-33
Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 18/125 (14%)
Query: 2 VMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAI 61
+ +G A+V+GGA G+G A L G V I D+ G+ LA++ G A
Sbjct: 25 IKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADE----LGNR-AE 79
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR-------------FWELEVDV 108
+ +VT A + Q V+ + G + + +D+
Sbjct: 80 FVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDL 139
Query: 109 NLVGT 113
L GT
Sbjct: 140 YLNGT 144
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 113 bits (286), Expect = 9e-33
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
DL GK ++TGGA G+G + + GA+V + D+ D G A + G A Y
Sbjct: 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE----LGD-AARYQ 56
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DVT ++ ++ G +D ++NNAGI F + V++NL G
Sbjct: 57 HLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGV 114
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 113 bits (285), Expect = 1e-32
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
L GKVA++TGG GIG A + ++ GAKV I + VGE A+ P++ +
Sbjct: 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQ 60
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
D +D + + F T + G + ++NNAGI ++ W + VNL G
Sbjct: 61 HDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGV 117
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 113 bits (286), Expect = 1e-32
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
+V L+TGG +G+GRA L GAK+S+ D++ E
Sbjct: 7 PTTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEV 66
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLV 111
+ DV+D Q E T ++ G +D NNAGI + ++ V +NL
Sbjct: 67 LTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLR 126
Query: 112 GT 113
G
Sbjct: 127 GV 128
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 113 bits (286), Expect = 1e-32
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
LKG ALVTGG+ GIG A EEL GA+V C N+ ++ E WR K
Sbjct: 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGS 75
Query: 64 PCDVTDYPQFEEAFQITLQKLGG-LDIVINNAGIFNDRF--------WELEVDVNLVGT 113
CD+ + ++ Q G L+I++NNAG+ + + + + N
Sbjct: 76 VCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAA 134
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 113 bits (285), Expect = 1e-32
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
+ L +VA+VTGGA IG A L + GA+V I D+++++ E R +
Sbjct: 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH--DVSS 66
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
DVT+ + A + ++ G +DI++ AGI W +VD+NL G
Sbjct: 67 VVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGM 126
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 113 bits (285), Expect = 2e-32
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M+ L+GK AL+TG A GIGRA+ E ++ GA V+I DI+ A + GP A
Sbjct: 2 MMKRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAE----IGP-AA 56
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
DVT + A T++ GGLDI++NNA +F+ +E +N+ G
Sbjct: 57 YAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAG 116
Query: 113 T 113
T
Sbjct: 117 T 117
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 114 bits (287), Expect = 2e-32
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
+GKVA +TGG G+G+ L GA+ I V + AEQ ++ G N+
Sbjct: 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-NKVHAI 81
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
CDV D + ++ G +IVINNA + W+ D+ L GT
Sbjct: 82 QCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGT 139
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 112 bits (284), Expect = 2e-32
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M + KV +VTG GIG+AY E L + GA V + DIN E +A+Q G A
Sbjct: 3 GSMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGG--TA 60
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND-RF----------WELEVDVN 109
I DV+D + TL + GG+D ++NNA IF + ++ + VN
Sbjct: 61 ISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVN 120
Query: 110 LVGT 113
L G
Sbjct: 121 LDGA 124
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 113 bits (285), Expect = 2e-32
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
L+ KVA++TGGA GIG + +++GAKV I DI D G+ + P+ +
Sbjct: 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG---SPDVISFVH 70
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF----------WELEVDVNLVGT 113
CDVT T+ K G LDI+ N G+ + ++ +D+N+ G
Sbjct: 71 CDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGA 129
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 113 bits (285), Expect = 2e-32
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
+G++ALVTGG G+GR + L G V I V + A + + G N
Sbjct: 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG-NIVRA 87
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
CDV D Q F + LD+++NNAG W V NL G
Sbjct: 88 VVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGA 147
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 113 bits (285), Expect = 2e-32
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 10/123 (8%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGP-NR 59
M + + + LVTGG +GIG+ L+ GA V I N ++
Sbjct: 5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGA 64
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNL 110
Y P D+T+ + A G L V++ AG + W VD+N+
Sbjct: 65 IRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNV 124
Query: 111 VGT 113
GT
Sbjct: 125 NGT 127
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 114 bits (286), Expect = 3e-32
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 1 MVM-DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNR 59
M + D G+ A VTGGA G+G +LL G KV+I DI + +
Sbjct: 1 MSLKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPE 60
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI-FNDRFWELE-------VDVNLV 111
+ DV F+ A + G + I+ NNAG+ E + VNL
Sbjct: 61 VMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLH 120
Query: 112 G 112
G
Sbjct: 121 G 121
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 112 bits (283), Expect = 3e-32
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M M + GKVA++TG ++GIG A E K GA + + + A + K+G R
Sbjct: 1 MDMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG-VRV 59
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
+ DV + + GG DI++NNAG ++ W+ ++ ++
Sbjct: 60 LEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMA 119
Query: 113 T 113
Sbjct: 120 A 120
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 112 bits (282), Expect = 5e-32
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M +L+ KVA++TG GIG L + GA+V + D+ ++ A A
Sbjct: 5 MTAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAAS-----VGRGA 59
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF----------WELEVDVNL 110
++ D+T+ T+ G LDIV NNA + W+ VN
Sbjct: 60 VHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNA 119
Query: 111 VGT 113
GT
Sbjct: 120 RGT 122
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 112 bits (283), Expect = 5e-32
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 1 MVM-DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNR 59
M DL GKVA+VTG AGIG A L G V DI+ + A +
Sbjct: 22 MNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCG 76
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLV 111
A C DV+D Q + GG+D ++ NAG+ + ++ + +NL
Sbjct: 77 AAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLR 136
Query: 112 GT 113
G
Sbjct: 137 GA 138
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 112 bits (282), Expect = 5e-32
Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
LK K LVTGG GIG A EE FGA + C N+ + +W+ K +
Sbjct: 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTG 67
Query: 63 CPCDVTDYPQFEEAFQITLQKLGG-LDIVINNAGIFND----RF----WELEVDVNLVGT 113
CD + P+ E+ Q GG LDI+INN G + + + NL
Sbjct: 68 SVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESA 127
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 111 bits (280), Expect = 8e-32
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
L VA+VTG AAGIGRA K GA V + D+ E +A R G +AI
Sbjct: 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGG--KAIG 65
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF-------WELEVDVNLVGT 113
C+VTD E + L + G + +++NNAG + +E +NL
Sbjct: 66 LECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSL 123
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 111 bits (280), Expect = 8e-32
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
DL G+ A+VTGG+ GIG A L K GA V+I D++ + + N
Sbjct: 8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE-----NGGFA 62
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DVT + A Q + LGG D++ NAG+ R W+ DVN G
Sbjct: 63 VEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGV 121
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 111 bits (281), Expect = 9e-32
Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M+ VAL+TG +GIGRA L G V + E++A++ G +AI
Sbjct: 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGG--QAIA 81
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
DV+D Q A + + K G LDIV+ NAGI W+ + VNL GT
Sbjct: 82 LEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGT 141
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 111 bits (279), Expect = 1e-31
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
L+GKVALVTGGA+G+G + LL GAKV+ DIN++ G+ LA + R+++
Sbjct: 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVR 58
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DV+ + ++LG L++++NNAGI + + +N
Sbjct: 59 HDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESV 115
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 111 bits (280), Expect = 1e-31
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
++ DL + LVTGG GIGR + GA V++ + + +
Sbjct: 35 VMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGA-GNV 93
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
I DV+D +A + + G LD+V NAGIF + +DVN+ G
Sbjct: 94 IGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKG 153
Query: 113 T 113
T
Sbjct: 154 T 154
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 111 bits (279), Expect = 2e-31
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDS-VGEDLAEQWRTKYGPNR 59
+ K A++TG +GIG A L K GA + + + ++
Sbjct: 19 YFQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSG-T 77
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLV 111
++ P D+T + + + + GG DI++NNAG+ F W+ + VNL
Sbjct: 78 VLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLS 137
Query: 112 GT 113
+
Sbjct: 138 SS 139
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 110 bits (278), Expect = 2e-31
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
MDL +V +VTGG +GIGRA E K GA V + D+N+ +A + ++A
Sbjct: 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFG 77
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DV+ E + T K G +D+++NNAG W+ + VN+ G
Sbjct: 78 VRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGI 136
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 110 bits (277), Expect = 2e-31
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
+ K +VTGG GIG A+ + GA V++ + + ++ E+ ++G +
Sbjct: 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-VKTKA 68
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
CDV++ + Q LG + +I NAG+ + + DVN+ G
Sbjct: 69 YQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGV 127
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 109 bits (275), Expect = 4e-31
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
+L+G ALVTGG+ GIG EEL GA V C N D QWR+K +
Sbjct: 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGF--KVEAS 63
Query: 64 PCDVTDYPQFEEAFQITLQKLGG-LDIVINNAGIFND----RF----WELEVDVNLVGT 113
CD++ + +E G L+I++NNAGI + + L + +N
Sbjct: 64 VCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAA 122
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 109 bits (275), Expect = 5e-31
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M L+GKVAL+TG +G G + K GAKV I D + + E +A + + A+
Sbjct: 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALA 59
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
D++ + A + L K G +DI++NNAGI + ++ V VN+ G
Sbjct: 60 VAADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGV 119
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 109 bits (274), Expect = 5e-31
Identities = 43/123 (34%), Positives = 61/123 (49%), Gaps = 21/123 (17%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M+++ VA+VTGGA+G+G A + LL GA+V + DI GED+ G RA +
Sbjct: 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR---GEDVVAD----LGD-RARF 56
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR------------FWELEVDVNL 110
DVTD A + + +G L IV+N AG N + VD+NL
Sbjct: 57 AAADVTDEAAVASALDLA-ETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINL 115
Query: 111 VGT 113
VG+
Sbjct: 116 VGS 118
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 109 bits (274), Expect = 5e-31
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 7 GKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCD 66
+VA+VTG ++G G A L G +V+ D++ E+ A Y ++ + D
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA-DKVLRVRAD 60
Query: 67 VTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF-----------WELEVDVNLVGT 113
V D A T+++ G +D+++NNAGI + ++ + VN+ G
Sbjct: 61 VADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGI 118
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 109 bits (276), Expect = 5e-31
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 1 MVM-DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNR 59
MVM L+GK+A+VTG ++GIGRA + GAKV + N + +L ++ G
Sbjct: 1 MVMSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGG--E 58
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNL 110
A DV D E ++ +++ GGLD NNAG W +D NL
Sbjct: 59 AAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNL 118
Query: 111 VGT 113
Sbjct: 119 TSA 121
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 109 bits (274), Expect = 7e-31
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 5 LKGKVALVTGGAA-GIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
LKGKV LVT A GIG L GA V I D ++ + +Q G R
Sbjct: 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL-GLGRVEAV 78
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
CDVT + T++K G LD+++NNAG+ W+ ++V L
Sbjct: 79 VCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSV 136
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 109 bits (275), Expect = 8e-31
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M L G+VAL+TGGA+G+GRA + + GA+V++ D + +L A+
Sbjct: 1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVG 55
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND-------------RFWELEVDVN 109
DV + A + L G +D +I NAGI++ ++ VN
Sbjct: 56 VVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVN 115
Query: 110 LVGT 113
+ G
Sbjct: 116 VKGY 119
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 109 bits (274), Expect = 9e-31
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
L+ KVA +TGG +GIG E ++ G I + A + G R +
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-RRCLPLS 83
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
DV P A L++ G +DI+IN A + ++ +D++ GT
Sbjct: 84 MDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGT 140
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 108 bits (273), Expect = 1e-30
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
DL GK AL+TG + GIG+ + GA+V++ + + +A++ G +A+
Sbjct: 28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIA-GVG-GKALP 85
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
CDVT Q +LGG+DI + NAGI + + ++ D N+ G
Sbjct: 86 IRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGV 144
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 108 bits (272), Expect = 1e-30
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
DL+G+ +VTGG GIGR + GA V++ + + + + I
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSG-KVIGV 65
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DV+D Q + +++ GG+D+V NAG+F D VN+ GT
Sbjct: 66 QTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGT 123
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 108 bits (271), Expect = 2e-30
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
+ L GK AL+TG GIG GA++ + + S + ++G
Sbjct: 16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGT-DVHT 74
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND----RF----WELEVDVNLVGT 113
D+ + E + + GGLD+++NNAGI + ++ + VNL
Sbjct: 75 VAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAP 133
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 107 bits (269), Expect = 3e-30
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M LK K+A++TGGA GIGRA E GA ++I D+ + R R
Sbjct: 1 MTQRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP--APEAEAAIRNLGR--RV 56
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
+ CDV+ E + + G DI++NNAGI+ W+ ++N+
Sbjct: 57 LTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDS 116
Query: 113 T 113
Sbjct: 117 G 117
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 107 bits (269), Expect = 3e-30
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
LK KV +VTG +GIGRA ++ + V ++ + + ++ R +
Sbjct: 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLG 60
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
DV+ EE + T + +D++ NNAGI + WE + VNL
Sbjct: 61 VKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSA 120
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 107 bits (269), Expect = 3e-30
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
+K KV ++TGG++G+G+ K GA+V I E+ + G + +
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPG--QILTVQ 61
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND--------RFWELEVDVNLVGT 113
DV + ++ + +K G +DI+INNA W +++ L GT
Sbjct: 62 MDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGT 118
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 108 bits (271), Expect = 3e-30
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPN---RAI 61
L+G+VA+VTGGA GIG+A +ELL+ G+ V I + A++ + P R I
Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
C++ + + + TL G ++ ++NN G + + W ++ NL GT
Sbjct: 76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGT 135
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 107 bits (270), Expect = 5e-30
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
+ G+ A+VTGGA+GIG A E + GA++ + D++ E R + A
Sbjct: 25 FLSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGF--DA 82
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND-RFWELE-------VDVNLVG 112
CDV + + LGG+D+V +NAGI ++ +D++L G
Sbjct: 83 HGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWG 142
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 106 bits (267), Expect = 5e-30
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYG-PNR 59
M ++ + +A++TG + GIG L G +V + + E + ++
Sbjct: 1 MSLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQE 60
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF-------WELEVDVNLVG 112
I P D+TD + + + QK G +DI++N A +F D + +++N++
Sbjct: 61 PIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIA 120
Query: 113 T 113
Sbjct: 121 Q 121
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 106 bits (268), Expect = 5e-30
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M L KV +++G +G + GA + + ED+A+Q RA
Sbjct: 5 MGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGR--RA 62
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLV 111
+ D+TD Q T++ G +D+VINNA +++ +
Sbjct: 63 LSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVF 122
Query: 112 GT 113
G
Sbjct: 123 GA 124
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 106 bits (268), Expect = 6e-30
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 22/122 (18%)
Query: 1 MVM-DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNR 59
M DL+ KV +VTG + GIGRA E + G+KV I+D +
Sbjct: 1 MGFSDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEA-------------K 47
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLV 111
+ CDVT+ Q + + ++ G + +++NNAGI + W +DVNL
Sbjct: 48 YDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLF 107
Query: 112 GT 113
G
Sbjct: 108 GY 109
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 107 bits (270), Expect = 6e-30
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 21/133 (15%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG---------EDLAEQW 51
M ++GKVA +TG A G GR++ L + GA + D+ + +DLAE
Sbjct: 22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETV 81
Query: 52 R--TKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND--RFWELE-- 105
R G R I DV D+ + A + +LG LDIV+ NA + ++ R ++
Sbjct: 82 RQVEALG-RRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPK 140
Query: 106 -----VDVNLVGT 113
+DVNL G
Sbjct: 141 TWRDMIDVNLNGA 153
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 106 bits (267), Expect = 8e-30
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
+ G++ L+TG GIGR E K +K+ + DIN E+ A + + +
Sbjct: 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA--KVHTF 85
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVG 112
D ++ + + ++G + I++NNAG+ D E +VN++
Sbjct: 86 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLA 142
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 106 bits (266), Expect = 1e-29
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
K+A+VTG +G+GRA L G V++ ++ A + + A+
Sbjct: 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCV 79
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
P DVTD F T++K G +D++ NNAG W+ VD NL G
Sbjct: 80 PTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGP 138
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 106 bits (266), Expect = 1e-29
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
LKGKVA VTG + GIG A E + GA V+I + E + YG +
Sbjct: 30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQK-TYG-VHSKA 87
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF----------WELEVDVNLVG 112
C+++D EE + G +D+ + NAG+ + W + V+L G
Sbjct: 88 YKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNG 147
Query: 113 T 113
Sbjct: 148 V 148
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 105 bits (265), Expect = 1e-29
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 16/117 (13%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
GK LVTGGA GIGRA + + GA V++CD+ E +
Sbjct: 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI--------GGAFFQ 55
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
D+ D + + LG +D+++NNA I W ++VNL
Sbjct: 56 VDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAP 112
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 106 bits (266), Expect = 1e-29
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG----------EDLAEQ 50
M L+G+VA +TG A G GRA+ + GA + DI + +DL+E
Sbjct: 5 MAGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSET 64
Query: 51 WR--TKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND-RFWELE-- 105
R R + D D+ + + + LG LDI++ NAG+ + ++
Sbjct: 65 VRLVEAAN-RRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPE 123
Query: 106 -----VDVNLVGT 113
+D+N+ GT
Sbjct: 124 DFRDVMDINVTGT 136
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 105 bits (265), Expect = 2e-29
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG----------EDLAEQWR-- 52
L+G+VA +TG A G GR++ L GA + CDI V EDL E R
Sbjct: 13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLV 72
Query: 53 TKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WEL 104
G +A+ DV D E +++ G LD+V+ NAG+ + W+
Sbjct: 73 EDQG-RKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDT 131
Query: 105 EVDVNLVGT 113
+ VNL GT
Sbjct: 132 VIGVNLTGT 140
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 105 bits (264), Expect = 2e-29
Identities = 43/124 (34%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG---------EDLAEQWR--T 53
L GKVA +TG A G GRA+ L GA + D+ D + E+LA +
Sbjct: 11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVE 70
Query: 54 KYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELE----VDVN 109
G +R + DV D A Q L +LG LDIV+ NAGI + +DVN
Sbjct: 71 DIG-SRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVN 129
Query: 110 LVGT 113
L G
Sbjct: 130 LTGV 133
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 105 bits (264), Expect = 2e-29
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 20/118 (16%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
+ KVA+VTGG++GIG A + L+++GAKV +++ ++++ ++
Sbjct: 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFK----------- 59
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DVT+ + +EA + T +K G +DI++NNAGI W +DVN+ G+
Sbjct: 60 -IDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGS 116
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 104 bits (263), Expect = 3e-29
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M L K+A++TG +GIG A + + GA+V I V + + G A
Sbjct: 23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAE----IGGG-A 77
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR--------FWELEVDVNLVG 112
+ D + + + ++ + G +D++ NAG + ++ D N+ G
Sbjct: 78 VGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKG 137
Query: 113 T 113
Sbjct: 138 V 138
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 104 bits (262), Expect = 4e-29
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
L GK LVTG A+GIGRA + + GA + D + + + + AI
Sbjct: 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAE-----AIAV 57
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DV+D E F L++ G L V + AG+ + WE + VNL G+
Sbjct: 58 VADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGS 115
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 104 bits (261), Expect = 5e-29
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDI-NDSVGEDLAEQWRTKYGPNR 59
M DL+GKV ++TG + G+G++ AKV + + + E+ + G
Sbjct: 1 MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG--E 58
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLV 111
AI DVT Q +++ G LD++INNAG+ N W +D NL
Sbjct: 59 AIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLT 118
Query: 112 GT 113
G
Sbjct: 119 GA 120
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 104 bits (261), Expect = 5e-29
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
L+ KVALVT GIG A L + GA V + + + +
Sbjct: 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL--SVTGT 68
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
C V E + + GG+DI+++NA + W+ + VN+ T
Sbjct: 69 VCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKAT 127
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 104 bits (262), Expect = 6e-29
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG---------EDLAEQWR--T 53
++ KV LVTGGA G GR++ +L + GA + + DI + DL E
Sbjct: 8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE 67
Query: 54 KYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF------WELEVD 107
K G +A DV D + + G LD+V+ NAGI + D
Sbjct: 68 KTGR-KAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFD 126
Query: 108 VNLVGT 113
V+ VG
Sbjct: 127 VDFVGV 132
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 103 bits (259), Expect = 8e-29
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY-C 63
LKG+V LVTG A GIG A GA V + ++ ++++Q ++ P I
Sbjct: 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIAL 71
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
+ Q+ E + G LD +++NA I R + + VN+ T
Sbjct: 72 NLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNAT 130
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 103 bits (258), Expect = 1e-28
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 23/120 (19%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
K LV GG+ +G + D ++ D +
Sbjct: 18 GSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFT------------ 65
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR---------FWELEVDVNLVGT 113
+ + + + K +D + AG ++ + +D+NL
Sbjct: 66 --IKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSA 123
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 103 bits (259), Expect = 1e-28
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
DL+G+VALVTGG+ G+G + L + G V + N + A++ KYG +
Sbjct: 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG-VETMAF 76
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
CDV++Y + ++ + +K G LD V+N AGI F + ++VNL GT
Sbjct: 77 RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGT 134
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 103 bits (258), Expect = 1e-28
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
LKGK ALVTG +GIG + L + GA + + D A ++G +A++ P
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGD---PAPALAEIARHG-VKAVHHP 57
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
D++D Q E F + ++ GG+DI++NNAGI F W+ + +NL
Sbjct: 58 ADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAV 114
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 103 bits (259), Expect = 1e-28
Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG-------------EDL 47
M ++GKVA VTG A G GR++ L + GA + DI + EDL
Sbjct: 5 MTGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDL 64
Query: 48 AEQWR--TKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---- 101
AE + R + DV DY + A +++LG LDI++ NAGI N
Sbjct: 65 AETADLVKGHN-RRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDK 123
Query: 102 -----WELEVDVNLVGT 113
W +D+NL G
Sbjct: 124 TSEEDWTEMIDINLAGV 140
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 102 bits (257), Expect = 2e-28
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M + L+GKV+LVTG GIGRA E+L G+ V I + + +AE+ KYG +A
Sbjct: 1 MEIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYG-VKA 59
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
++ +AF+ + G+DI++NNAGI D+ WE + VNL G
Sbjct: 60 HGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTG 119
Query: 113 T 113
T
Sbjct: 120 T 120
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 103 bits (258), Expect = 2e-28
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 19/119 (15%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M + KV ++TG + GIG +V + + A+
Sbjct: 24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSI---KPSADP--------DIHT 72
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
D++ + + +++ G +D ++NNAG+F + ++ + VN+ G
Sbjct: 73 VAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGF 131
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 102 bits (257), Expect = 2e-28
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
KVALVTG GIG+A L+K G V+I D ND+ + +A + G A+ DV
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDV 60
Query: 68 TDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
+D Q A + + LGG D+++NNAG+ + ++N+ G
Sbjct: 61 SDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGV 114
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 102 bits (257), Expect = 2e-28
Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M L L+TG + +G LL+ G +V I+ + R A+
Sbjct: 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVI---ISYRTEHASVTELR----QAGAVA 75
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF-------WELEVDVNLVGT 113
D + + + L V++NA + + V+++
Sbjct: 76 LYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAP 133
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 102 bits (257), Expect = 2e-28
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
DL GK ALVTG A G+G AY E L GA+V + DI ++ + + K A
Sbjct: 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGV 63
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
DVTD E AF + +DI+INNAGI W+ +D NL
Sbjct: 64 AFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSA 121
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 102 bits (257), Expect = 2e-28
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDS-VGEDLAEQWRTKYGPNRAIYC 63
LKGKVA+VTG +GIG L GA + + D+ E + ++G + +Y
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGV-KVLYD 60
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
D++ ++++G +DI++NNAGI F W+ + +NL
Sbjct: 61 GADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAV 118
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 102 bits (257), Expect = 2e-28
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M M LKGK ALVTG AGIG+A L+ GA V I + + ++ R +Y
Sbjct: 4 MHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAIL 63
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND----RF----WELEVDVNLVG 112
D+ E+ Q ++K +DI+INN GIF W +VN++
Sbjct: 64 QPVVADLGT----EQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMS 119
Query: 113 T 113
Sbjct: 120 G 120
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 101 bits (255), Expect = 3e-28
Identities = 46/119 (38%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M LK K L+TG A GIGRA E K GA++ CDI + + AE A
Sbjct: 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHP 53
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DV D E F L LG LD V++ AGI D F WEL + VNL G+
Sbjct: 54 VVMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGS 112
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 101 bits (255), Expect = 4e-28
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M DLKGK L+TG + GIG A + GAKV + D G A
Sbjct: 1 MFPDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGG-DA 59
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFN---------DRFWELEVDVNLV 111
+ D+ ++ + K GG+D++INNAG D F++ +D N+
Sbjct: 60 AFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIR 119
Query: 112 GT 113
Sbjct: 120 SV 121
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 101 bits (255), Expect = 4e-28
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY-C 63
L ++ LVTG + GIGR ++GA V + N+ +A + G +
Sbjct: 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFIL 69
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
++ Q LD V++NAG+ D W+ + VN+ T
Sbjct: 70 DLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNAT 128
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 101 bits (255), Expect = 5e-28
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M + + AL+T G G+G+ E+LL G V++ +D+ + ++ R
Sbjct: 1 MSLGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVE-ERL 59
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAG--IFNDRF--------WELEVDVNL 110
+ DVT + + + G +D +INNAG +F + W + NL
Sbjct: 60 QFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNL 119
Query: 111 VGT 113
Sbjct: 120 TAV 122
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 101 bits (254), Expect = 8e-28
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGP-NRAIYC 63
KVA++TG + GIGRA + GAKV+I + E+ +Q
Sbjct: 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSV 63
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF------------WELEVDVNLV 111
DVT +E TL K G LDI++NNAG ++ +++NL
Sbjct: 64 VADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLR 123
Query: 112 GT 113
Sbjct: 124 SV 125
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 101 bits (253), Expect = 8e-28
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 7 GKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCD 66
GKV LVTG + GIG++ + L + + S E ++ + KYG +R Y D
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARS--EAPLKKLKEKYG-DRFFYVVGD 58
Query: 67 VTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
+T+ ++ ++ G +D ++ NAG+ W+ D+N
Sbjct: 59 ITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSI 114
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 101 bits (253), Expect = 8e-28
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 1 MVM-DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNR 59
MVM + +GK A+V GG G+G A L++ GA+V + N+S + E+ +GP R
Sbjct: 1 MVMGNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREE----FGP-R 55
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR--------FWELEVDVNLV 111
D+ D + Q LG +D++ NAG+ ++ + VN
Sbjct: 56 VHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTK 115
Query: 112 GT 113
G
Sbjct: 116 GA 117
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 101 bits (253), Expect = 8e-28
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 21/118 (17%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
+GKVALVTG A GIG A L GA+V++ D + ++
Sbjct: 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-------------ADLHL 71
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
P D+ + + LG LDIV+NNAG+ + W L + VN+
Sbjct: 72 PGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAP 129
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 101 bits (254), Expect = 9e-28
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGP-NRAIY 62
GK ++TG + GIGR+ K GA+V+I N+ E+ +Q P +
Sbjct: 23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINA 82
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF----------WELEVDVNLVG 112
DVT+ ++ TL K G +DI++NNAG ++ +N
Sbjct: 83 VVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQA 142
Query: 113 T 113
Sbjct: 143 V 143
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 100 bits (252), Expect = 1e-27
Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 11/121 (9%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M + + V G IG ++ G V N L + G R
Sbjct: 1 MSLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGG--RI 58
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVG 112
+ D + + L++ I N G DR + ++
Sbjct: 59 VARSLDARNEDEVTAFLN-AADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWA 117
Query: 113 T 113
Sbjct: 118 G 118
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 100 bits (252), Expect = 1e-27
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M + ++GK+A+VT G++G+G A EL + GA++ + N E A + + +
Sbjct: 1 MDLGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQV 60
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVG 112
D+ + + F+ + LGG DI++ + G W+ +
Sbjct: 61 DIVAGDIREPGDIDRLFE-KARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARS 119
Query: 113 T 113
Sbjct: 120 A 120
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 101 bits (253), Expect = 1e-27
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTK-YGPNRAIY 62
K ++TG + GIGR + GA V+I + E+ + +
Sbjct: 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNS 62
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND------------RFWELEVDVNL 110
DVT ++ TL++ G +D+++NNAG + + +NL
Sbjct: 63 VVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNL 122
Query: 111 VGT 113
Sbjct: 123 QAV 125
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 100 bits (252), Expect = 1e-27
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 3 MDLKGKVALVTG--GAAGIGRAYCEELLKFGAKVSICDI-NDSVGEDLAEQWRTKYGPNR 59
+ LKGKV +VTG G G+G + GA V+I E+ ++ YG +
Sbjct: 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGI-K 74
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLV 111
A C V Y E+ + + G +D I NAG D W V V+L
Sbjct: 75 AKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLN 134
Query: 112 GT 113
GT
Sbjct: 135 GT 136
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 101 bits (253), Expect = 1e-27
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
L+GK +VTG + GIGR L K GA V + + + + + G A Y
Sbjct: 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL-ELGAASAHYI 83
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
+ D E+ + +GGLD++I N + ++VN +
Sbjct: 84 AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSY 141
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 100 bits (251), Expect = 1e-27
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
L G+VA+VTG + GIG A +L GA+V + + + + G A
Sbjct: 26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGG--EAESH 83
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI---------FNDRFWELEVDVNLVGT 113
CD++ L G D+++NNAG+ W+ + VNL
Sbjct: 84 ACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAP 142
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 100 bits (252), Expect = 1e-27
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
+VALVTG +GIG L K G +V +C + ++ R A
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADG 75
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
CDV P+ E +++ G +D+++NNAG W V+ NL G
Sbjct: 76 RTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGV 134
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 101 bits (253), Expect = 1e-27
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
+ KVALVTG GIGR + L K + V + + ++ ++ +
Sbjct: 38 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ES 95
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
DV+ + E L + +DI++NNAGI D WE + NL
Sbjct: 96 SGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNS 155
Query: 113 T 113
Sbjct: 156 L 156
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 100 bits (251), Expect = 1e-27
Identities = 40/117 (34%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
L GK ALVTG A GIG+A L GA V + DIN + A +A
Sbjct: 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIA 58
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
D++D + F GG+DI++NNA I W +DVNL GT
Sbjct: 59 ADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGT 115
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 100 bits (252), Expect = 2e-27
Identities = 46/129 (35%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG---------EDLAEQWR-- 52
D +GK AL+TGGA G+GR++ L + GA ++ICD ++ +DLAE
Sbjct: 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66
Query: 53 TKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND-RFWELE------ 105
K G R I DV D E LGG+DI I NAGI E+E
Sbjct: 67 EKTG-RRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDE 125
Query: 106 -VDVNLVGT 113
+ NL GT
Sbjct: 126 VIGTNLTGT 134
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 100 bits (252), Expect = 2e-27
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG---------EDLAEQWR--T 53
L+GKVA +TG A G GR + L + GA + D+ E+L E R
Sbjct: 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE 103
Query: 54 KYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND-RFWELE------- 105
+ G R I DV D + L + G +DI+++N GI N L
Sbjct: 104 EQG-RRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDI 162
Query: 106 VDVNLVGT 113
+ NL+G
Sbjct: 163 LQTNLIGA 170
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 99.1 bits (248), Expect = 3e-27
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 18/121 (14%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M + L G+ LVTG GIGR + L GA+V + + L +
Sbjct: 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP------GI 54
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVG 112
D+ D+ E A +G +D+++NNA + ++ +VNL
Sbjct: 55 EPVCVDLGDWEATERAL----GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRA 110
Query: 113 T 113
Sbjct: 111 V 111
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 99.1 bits (248), Expect = 3e-27
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M L KVALVTG + GIG L GA V + + E + K +A
Sbjct: 1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF--KARG 58
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
+++D + F + +DI++NNAGI D W+ ++ NL
Sbjct: 59 LVLNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSI 117
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 99.1 bits (248), Expect = 4e-27
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
+ +VTGG GIG+ C + L+ G KV DI++ D A++ PN Y DV
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE-----RPN-LFYFHGDV 56
Query: 68 TDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
D ++ + ++KL +D+++NNA + ++ + V L
Sbjct: 57 ADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAP 110
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 99.1 bits (248), Expect = 4e-27
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M ++ G ALVTG GIGR + L GAKV +S LA++
Sbjct: 1 MKLNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP------GI 54
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVG 112
D+ D+ E+A +G +D+++NNA + ++ VNL
Sbjct: 55 EPVCVDLGDWDATEKAL----GGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRS 110
Query: 113 T 113
Sbjct: 111 V 111
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 99.2 bits (248), Expect = 5e-27
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRT------KYG 56
+ L GK +TG + GIG A + GA V+I + L + G
Sbjct: 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG 61
Query: 57 PNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDV 108
+ + CD+ + Q A T+ GG+DI++NNA R ++L V
Sbjct: 62 -GQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQV 120
Query: 109 NLVGT 113
N G+
Sbjct: 121 NARGS 125
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 98.8 bits (247), Expect = 5e-27
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 7 GKVALVTGGAAGIGRAYCEELLKFGAKVSICDI--NDSVGEDLAEQWRTKYGPNRAIYCP 64
KVA+VTGGA GIGR E+L G +++ D+ + + + +A++
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQ--KAVFVG 59
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DVTD F+ A +KLGG D+++NNAGI + + VN+
Sbjct: 60 LDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSV 116
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 98.8 bits (247), Expect = 6e-27
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 14/127 (11%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQ-----WRTKY 55
M L+ +ALVTG +GIGRA L GA V+ CD++ + ++ +
Sbjct: 1 MQNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGP 60
Query: 56 GPNRAIYCPCDVTDYPQFEEAFQITLQKLGG-LDIVINNAGIFNDRF--------WELEV 106
DV++ + +V++ AGI D F W+ +
Sbjct: 61 PRGNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVI 120
Query: 107 DVNLVGT 113
VNL GT
Sbjct: 121 AVNLKGT 127
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 99.2 bits (248), Expect = 7e-27
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG-EDLAEQWRTKYGPNR 59
M+ VA+VTGG GIG L G ++I I D+ G + + R
Sbjct: 23 MMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGA--R 80
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF----------WELEVDVN 109
I+ D+ D + + + G +D ++NNAGI + ++ V VN
Sbjct: 81 VIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVN 140
Query: 110 LVGT 113
L GT
Sbjct: 141 LRGT 144
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 98.9 bits (247), Expect = 8e-27
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
+ + A VTG ++GIG A L G V C + + R
Sbjct: 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGH--DVDGSS 79
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
CDVT + A +++ G + I++N+AG +D W +D NL G
Sbjct: 80 CDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGV 136
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 99.2 bits (248), Expect = 9e-27
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
LKGK+ALVTG + GIG A K GA + DIN + + ++ A
Sbjct: 31 SLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGI--NAHGY 88
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
CDVTD + ++G +DI++NNAGI + +D++L
Sbjct: 89 VCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAP 146
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 98.4 bits (246), Expect = 1e-26
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M L +VA+VTG + GIGRA EL + GA V ++ E + ++
Sbjct: 22 MDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL--EG 79
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
+V D + + TL++ G L++++NNAGI D+ W+ +D NL
Sbjct: 80 RGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKA 139
Query: 113 T 113
Sbjct: 140 V 140
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 97.3 bits (243), Expect = 1e-26
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 13/117 (11%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
+ +VTG +G+GRA L++ G +VS+ + N I
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIV 55
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
D+ + + AF ++ G ++V++ AG ++ NLV T
Sbjct: 56 ADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVST 112
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 97.6 bits (244), Expect = 2e-26
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
+ L ++ALVTG + GIGRA EL GAKV++ + + D G A
Sbjct: 22 TALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG-GEA 80
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
DV+ + E F +++ G LD+++NNAGI D W+ +D+NL G
Sbjct: 81 FAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGG 140
Query: 113 T 113
Sbjct: 141 V 141
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 97.2 bits (243), Expect = 2e-26
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
L G A VTG +GIG C GA++ + D + + A++ G A
Sbjct: 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQE----LGAAVAARI 63
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
DVTD A + + + I++N+AGI +D W + VN+ G
Sbjct: 64 VADVTDAEAMTAAAA-EAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGM 120
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 97.7 bits (244), Expect = 2e-26
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRT------KYG 56
M L+GK ++GG+ GIG A + + GA V++ + L T + G
Sbjct: 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG 64
Query: 57 PNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDV 108
+A+ D+ D A T+++ GG+DI +NNA N ++L +
Sbjct: 65 -GQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGI 123
Query: 109 NLVGT 113
+ GT
Sbjct: 124 QVRGT 128
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 98.4 bits (245), Expect = 4e-26
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRT------KYGP 57
L G +TG + GIG+A + K GA + I L T G
Sbjct: 42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVG- 100
Query: 58 NRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND--------RFWELEVDVN 109
+A+ C DV D Q A + ++K GG+DI++NNA + + +L ++VN
Sbjct: 101 GKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVN 160
Query: 110 LVGT 113
GT
Sbjct: 161 TRGT 164
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 96.4 bits (241), Expect = 4e-26
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M LKGK A+VTG + G+G+A +L GA + + S D + G +
Sbjct: 1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAG-INVVV 59
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DV + E + + G +DI++NNAGI D W+ ++ NL
Sbjct: 60 AKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSA 118
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 96.1 bits (240), Expect = 7e-26
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
L G+ ALVTG GIG A GA V + + +++A G
Sbjct: 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD----LGK-DVFV 77
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
+++D ++ ++ +++ G+DI++NNAGI D W+ + VNL
Sbjct: 78 FSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAA 136
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 95.6 bits (239), Expect = 7e-26
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M+L+GKVALVTG + GIG+A E L + GAKV ++S + +++
Sbjct: 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDN-----GKG 59
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
+VT+ E + + GG+DI++NNAGI D W ++ NL
Sbjct: 60 MALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSI 118
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 95.7 bits (239), Expect = 7e-26
Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 20/119 (16%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
MD GK VTG GIG A ++ GAKV+ D
Sbjct: 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQA---FTQEQY---------PFAT 50
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DV D Q + Q L + LD ++N AGI W+ VN+ G
Sbjct: 51 EVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGA 109
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 95.7 bits (239), Expect = 1e-25
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
L G++ALVTGG+ GIG+ + LL+ GA+V IC + D A +
Sbjct: 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG---DCQAI 82
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
P D++ Q + LDI++NNAG + WE + +N+
Sbjct: 83 PADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSV 140
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 94.6 bits (236), Expect = 2e-25
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 27/118 (22%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
+ ALVTGGA+G+GRA L G +V + D+ + IY DV
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGED--------------LIYVEGDV 48
Query: 68 TDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR------------FWELEVDVNLVGT 113
T A Q+ L V++ AG+ + ++VNL+GT
Sbjct: 49 TREEDVRRAVARA-QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGT 105
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 94.5 bits (236), Expect = 3e-25
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPN--RA 60
M + ++A VTGG GIG + C+ L K G +V +W
Sbjct: 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVV---AGCGPNSPRRVKWLEDQKALGFDF 65
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
+V D+ ++AF ++G +D+++NNAGI D W+ +D NL
Sbjct: 66 YASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTS 125
Query: 113 T 113
Sbjct: 126 L 126
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 93.7 bits (234), Expect = 4e-25
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
L GKV ++T A GIG+A + GAKV DIN+S ++L +
Sbjct: 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY-------PGIQTRV 56
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DVT ++ ++ LD++ N AG + W+ +++N+
Sbjct: 57 LDVTK----KKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSM 109
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 93.3 bits (233), Expect = 6e-25
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 11/118 (9%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDI-NDSVGEDLAEQWRTKYGPNRAIYC 63
+ K ALVTG + G+G+A L + G + I + + AE+ + +
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGV--KVLVV 59
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
+V + +E FQ + G LD+ +NNA R W+ +++N
Sbjct: 60 KANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKAL 117
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 93.0 bits (232), Expect = 1e-24
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
L G+ A+VTG +GIGRA + GA V D V +++A++ G A
Sbjct: 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGV-KEVADEIADGGG--SAEAV 84
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
D+ D + L +D+++NNAGI + W + VNL
Sbjct: 85 VADLADLEGAANVAE-ELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAA 141
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 92.2 bits (230), Expect = 2e-24
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRT--KYGPNRAIY 62
+VA VTGG G+G A L G V+ ++ S D W +
Sbjct: 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVA---VSHSERNDHVSTWLMHERDAGRDFKA 79
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DV D+ E + L G +D++INNAGI D W+ + +L
Sbjct: 80 YAVDVADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAM 138
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 91.8 bits (229), Expect = 2e-24
Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 23/118 (19%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSIC-DINDSVGEDLAEQWRTKYGPNRAIYC 63
LVTGG+ GIG+A E LL+ I DI S + +
Sbjct: 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAE------------NLKFI 49
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
D+T I K D + NAGI + +D+N+ +
Sbjct: 50 KADLTKQQDITNVLDII--KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSS 105
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 91.4 bits (228), Expect = 3e-24
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDI-NDSVGEDLAEQWRTKYGPNRAIYC 63
K ALVTG + GIGR+ +L + G V++ + E + E+ + K +
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGV--DSFAI 59
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
+V D + + + + + G LD+++NNAGI D W+ +D NL G
Sbjct: 60 QANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGV 117
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 91.8 bits (229), Expect = 3e-24
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%)
Query: 1 MVM-DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG-EDLAEQWRTKYGPN 58
M + + +V G IGRA + GA V + + G +
Sbjct: 1 MSLQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGR-- 58
Query: 59 RAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFN---------DRFWELEVDVN 109
A+ D+T+ + E A K G + +++ AG + FW +DVN
Sbjct: 59 SALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVN 118
Query: 110 LVGT 113
L
Sbjct: 119 LTSL 122
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 92.3 bits (230), Expect = 3e-24
Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 24/134 (17%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG-EDLAEQWRTKYGPNRAI 61
++ A+VTG A IGRA +L + G +V I N + LA++ + N A+
Sbjct: 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERS-NTAV 77
Query: 62 YCPCDVTDYP----QFEEAFQITLQKLGGLDIVINNAGIFND------------------ 99
C D+T+ EE + G D+++NNA F
Sbjct: 78 VCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVE 137
Query: 100 RFWELEVDVNLVGT 113
+ N +
Sbjct: 138 TQVAELIGTNAIAP 151
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 91.5 bits (228), Expect = 4e-24
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
+ G+V +VTG + GIGR +L K GA V I + +A++ ++ G + +
Sbjct: 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGG--QCVPVV 60
Query: 65 CDVTDYPQFEEAF-QITLQKLGGLDIVINNAGIFNDR--------FWELE-------VDV 108
CD + + F Q+ ++ G LD+++NNA FWE +V
Sbjct: 61 CDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNV 120
Query: 109 NLVGT 113
L G
Sbjct: 121 GLRGH 125
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 91.0 bits (227), Expect = 4e-24
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDI-NDSVGEDLAEQWRTKYGPNRAIYC 63
LKGKVALVTG + GIGRA +L K GA V + N+ ++ ++ + AI
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGS--DAIAV 59
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DV + + T+ G +DI++NNAG+ D W+ ++ NL G
Sbjct: 60 RADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGV 117
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 90.7 bits (226), Expect = 6e-24
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
+ + LVTGG GIG A G KV+I R+ P
Sbjct: 15 VPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITY-------------RSGEPPEGF 61
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
+ CD+TD Q E+A++ + G ++++I NAG+ D+ + V+ NL G
Sbjct: 62 LAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTG 121
Query: 113 T 113
T
Sbjct: 122 T 122
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 91.1 bits (227), Expect = 7e-24
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG-EDLAEQWRTKYGPNRAI 61
M KVA+VTG + GIG A L G V I + E++A + G +A+
Sbjct: 23 MMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGG--KAL 80
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DV+D F + GG+D+++NNAGI ++ + VNL GT
Sbjct: 81 TAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGT 140
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 90.3 bits (225), Expect = 1e-23
Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 17/128 (13%)
Query: 1 MVM----DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSI---CDINDSVGEDLAEQWRT 53
M + DLK KV ++ GG +G + + + + L ++
Sbjct: 1 MSLTKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELED 60
Query: 54 KYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR--------FWELE 105
+ + D+++ + + F ++ G +DI IN G + ++
Sbjct: 61 QGA--KVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAM 118
Query: 106 VDVNLVGT 113
+N
Sbjct: 119 DTINNKVA 126
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 91.3 bits (227), Expect = 1e-23
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG----------EDLAEQWRTK 54
+ G+V +VTG GIGRA+ GA+V + DI + + + ++
Sbjct: 25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA 84
Query: 55 YGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEV 106
G A+ +V D+ Q Q ++ GGLD+++NNAGI DR ++ +
Sbjct: 85 GG--EAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVI 142
Query: 107 DVNLVGT 113
V+L G
Sbjct: 143 AVHLKGH 149
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 90.4 bits (225), Expect = 1e-23
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 3 MD-LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAI 61
M+ + ++ALVTG + GIG A L++ G KV C E+LA + ++ P I
Sbjct: 27 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLI 86
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI----------FNDRFWELEVDVNLV 111
CD+++ F + G+DI INNAG+ + W+ +VN++
Sbjct: 87 PYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSG--WKDMFNVNVL 144
Query: 112 GT 113
Sbjct: 145 AL 146
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 89.1 bits (222), Expect = 2e-23
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M+ L+TG + GIG A L G +V + ++ + LA + A+
Sbjct: 1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE------GALP 54
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI----------FNDRFWELEVDVNLVG 112
P DV + + A + G L ++NNAG+ + W L +D NL G
Sbjct: 55 LPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEE--WRLVLDTNLTG 112
Query: 113 T 113
Sbjct: 113 A 113
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 89.5 bits (223), Expect = 2e-23
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
+DL GK +L+TG ++GIG A L K G+KV I N+ + L +
Sbjct: 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTI 64
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
C++ + + K LDI++ NAGI +D ++ +D+NL
Sbjct: 65 EVCNLANKEECSNLI----SKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKAN 119
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 89.5 bits (223), Expect = 2e-23
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWR---TKYGPNR 59
+ L GK A VTGG+ GIG A + L GA V+ + + A+ + G R
Sbjct: 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVA---LTYVNAAERAQAVVSEIEQAG-GR 82
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLV 111
A+ D D E+A + T++ LGGLDI++N+AGI++ ++ + VN
Sbjct: 83 AVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFR 142
Query: 112 GT 113
Sbjct: 143 AP 144
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 88.7 bits (221), Expect = 3e-23
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSIC-DINDSVGEDLAEQWRTKYGPNRAIYCPCD 66
+ AL+TG + GIGRA L + G ++I N E++AE+ R + P A+ +
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVL-GAN 60
Query: 67 VTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
+ + + LGGLD ++NNAGI D WE ++ NL
Sbjct: 61 LLEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAV 115
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 91.8 bits (228), Expect = 3e-23
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDI---------NDSVGEDLAEQWRT 53
+ G+VA+VTG AG+GR Y + GAKV + D+ + + + ++ R
Sbjct: 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRK 74
Query: 54 KYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELE 105
G A+ V D + + ++ G +DI++NNAGI DR W L
Sbjct: 75 AGG--EAVADYNSVIDG---AKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLV 129
Query: 106 VDVNLVGT 113
DV+L G+
Sbjct: 130 NDVHLKGS 137
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 88.0 bits (219), Expect = 7e-23
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
+ LVTGG GIG A + L G KV++ P
Sbjct: 11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG-------------APKGLFG 57
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
DVTD + AF + G ++++++NAG+ D F +E ++ NL G
Sbjct: 58 VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGA 116
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 87.2 bits (217), Expect = 9e-23
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 7 GKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCD 66
KVA++TG + GIG A L + G +++ + E +A + + G Y D
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGV-EVFYHHLD 60
Query: 67 VTDYPQFEEAFQITLQKLGGLDIVINNAGI-FNDRF-------WELEVDVNLVGT 113
V+ EE + L++ G +D+V+ NAG+ + R + ++VNL+G
Sbjct: 61 VSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGV 115
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 87.5 bits (218), Expect = 9e-23
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
V +VTG + GIG+A L K G KV + + + + YG +AI DV
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG-GQAITFGGDV 60
Query: 68 TDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
+ E + + G +D+V+NNAGI D W+ +D+NL G
Sbjct: 61 SKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGV 114
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 87.6 bits (218), Expect = 1e-22
Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAK-------VSICDINDSVGEDLAEQWRTKYGPNRA 60
+ L+TG GIGRA E + + + + E ++ + R +
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA--LT 60
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
D++D +++ G +D ++NNAG+ ++ ++ NL G
Sbjct: 61 DTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKG 120
Query: 113 T 113
T
Sbjct: 121 T 121
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 87.2 bits (217), Expect = 1e-22
Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 17/115 (14%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
A+VT G L + G V+ D + ++L Y
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAF--------AETYPQLKP 53
Query: 68 TDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF---------WELEVDVNLVGT 113
+ E + G +D++++N + + V+ +
Sbjct: 54 MSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRP 108
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 89.8 bits (223), Expect = 1e-22
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 22/130 (16%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDI---------NDSVGEDLAEQW 51
+D K KV ++TG G+G+ Y E K GAKV + D+ N + + ++
Sbjct: 2 SPVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEI 61
Query: 52 RTKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WE 103
G A+ +V D ++ + ++ G + ++INNAGI D ++
Sbjct: 62 VKNGG--VAVADYNNVLD---GDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYK 116
Query: 104 LEVDVNLVGT 113
L +DV+L G
Sbjct: 117 LVIDVHLNGA 126
Score = 76.3 bits (188), Expect = 1e-17
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
+ LK KV L+TG AG+G+ Y + K+GAKV + D D+ ++ + G A
Sbjct: 316 PTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDA--TKTVDEIKAAGG--EA 371
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVG 112
DV + + + K G +DI++NNAGI DR W+ V+L+G
Sbjct: 372 WPDQHDVAKDSE--AIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIG 429
Query: 113 T 113
T
Sbjct: 430 T 430
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 86.6 bits (215), Expect = 2e-22
Identities = 16/122 (13%), Positives = 36/122 (29%), Gaps = 19/122 (15%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M + + LV GG +G + V+ D+ + + A +
Sbjct: 1 MAASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE---NEEASA-------SVI 50
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFN---------DRFWELEVDVNLV 111
+ T+ A L +D ++ AG + + +L ++
Sbjct: 51 VKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIW 110
Query: 112 GT 113
+
Sbjct: 111 TS 112
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 87.3 bits (217), Expect = 2e-22
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWR---TKYGP 57
+ L GKVALVTG GIG A L + GAKV +N + AE+ G
Sbjct: 12 IPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVV---VNYANSTKDAEKVVSEIKALGS 68
Query: 58 NRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR--------FWELEVDVN 109
AI D+ P+ + F + G LDI ++N+G+ + ++ +N
Sbjct: 69 -DAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLN 127
Query: 110 LVGT 113
G
Sbjct: 128 TRGQ 131
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 87.3 bits (217), Expect = 2e-22
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWR---TKYGP 57
L GKVAL TG GIGR EL + GA V + N AE+ K G
Sbjct: 15 ASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVV---NYGSSSKAAEEVVAELKKLGA 71
Query: 58 NRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVN 109
+ + D++ + F + GGLD V++N+G+ ++ ++N
Sbjct: 72 -QGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLN 130
Query: 110 LVGT 113
G
Sbjct: 131 TRGQ 134
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 87.4 bits (217), Expect = 3e-22
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 22/128 (17%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG---------EDLAEQWRT 53
+ G+V LVTG G+GRAY + GA V + D+ + + E+ R
Sbjct: 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR 64
Query: 54 KYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELE 105
+ G +A+ V E+ + L G +D+V+NNAGI DR W++
Sbjct: 65 RGG--KAVANYDSVEAG---EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDII 119
Query: 106 VDVNLVGT 113
V+L G+
Sbjct: 120 QRVHLRGS 127
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 86.5 bits (215), Expect = 4e-22
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 25/134 (18%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG-EDLAEQWRTKYGPNRAIY 62
+ A++TGGA IG + L + G +V + + + L + A+
Sbjct: 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA-GSAVL 66
Query: 63 CPCDVTD----YPQFEEAFQITLQKLGGLDIVINNAGIFNDRF----------------- 101
C D++ E+ + + G D+++NNA +
Sbjct: 67 CKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPID 126
Query: 102 --WELEVDVNLVGT 113
N V
Sbjct: 127 AQVAELFGSNAVAP 140
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 86.1 bits (214), Expect = 6e-22
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWR---TKYGPNRAI 61
L+GKVALVTG GIGR EL + G KV + N + + AE+ K G A
Sbjct: 27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIV---NYANSTESAEEVVAAIKKNGS-DAA 82
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
+V F+ ++ G LDIV +N+G+ + ++ +N G
Sbjct: 83 CVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQ 142
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 85.3 bits (212), Expect = 1e-21
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
+ KV L+TG + GIG EL GAK+ + + E +A + R G A+
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG--TALAQV 59
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGI----------FNDRFWELEVDVNLVGT 113
DVTD Q + G +D+++NNAG+ ++ WE +DVN+ G
Sbjct: 60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDE--WERMIDVNIKGV 116
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 85.3 bits (212), Expect = 1e-21
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG-EDLAEQWRTKYGPNR 59
V LVTGG+ GIG A C + G +V + + + + G
Sbjct: 20 FQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGG--E 77
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI---------FNDRFWELEVDVNL 110
A+ P DV + F ++ G LD ++NNAGI + E + VN+
Sbjct: 78 AVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNV 137
Query: 111 VGT 113
G+
Sbjct: 138 TGS 140
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 84.7 bits (210), Expect = 1e-21
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 19/118 (16%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
+ +V GG +G A E K G V D++ D A+ N +
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA---NDQADS-------NILVDGN 50
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFN---------DRFWELEVDVNLVGT 113
+ T+ Q + + +D V AG + + +L + ++ +
Sbjct: 51 KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSS 108
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 84.1 bits (209), Expect = 2e-21
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M L+GKVAL+TG ++GIG A L GA V+I L ++ +
Sbjct: 1 MPSALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA--KV 58
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI----------FNDRFWELEVDVNL 110
DV D + A T++ LGGLDI++NNAGI D W +D NL
Sbjct: 59 HVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTD--WTRMIDTNL 116
Query: 111 VGT 113
+G
Sbjct: 117 LGL 119
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 85.2 bits (211), Expect = 3e-21
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 19/115 (16%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSI-CDINDSVGEDLAEQWRTKYGPNRAI 61
VALVTG A +GR+ E L G V + + + L+ + N AI
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAI 100
Query: 62 YCPCDVTD-----------------YPQFEEAFQITLQKLGGLDIVINNAGIFND 99
D+++ + + E G D+++NNA F
Sbjct: 101 TVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYP 155
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 83.8 bits (208), Expect = 3e-21
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 17/119 (14%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M LK K+A+VTG G+G ++L + N LAE
Sbjct: 1 MSLKKKIAVVTGATGGMGIEIVKDLSRDHIVY-ALGRNPEHLAALAEI-------EGVEP 52
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
D+ E L+ L +D +++ A + D W +D+N++
Sbjct: 53 IESDIVKEVLEEGGVD-KLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVP 110
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 83.4 bits (207), Expect = 5e-21
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M + ++ K LV + GIGRA + L + GA+V+IC N+ + + +
Sbjct: 13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHR---------- 62
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVG 112
Y CD+ + +K+ +DI++ NAG + ++ +D +
Sbjct: 63 -YVVCDLRK------DLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLN 115
Query: 113 T 113
Sbjct: 116 M 116
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 82.9 bits (206), Expect = 6e-21
Identities = 19/117 (16%), Positives = 31/117 (26%), Gaps = 19/117 (16%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
+ALVT G A E L + G V D + + + G
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPG--------TIA 53
Query: 68 TDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF-----------WELEVDVNLVGT 113
+ E TLQ +D +++N I + +
Sbjct: 54 LAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFP 110
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 82.8 bits (205), Expect = 1e-20
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 19/115 (16%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSI-CDINDSVGEDLAEQWRTKYGPNRAI 61
VALVTG A +GR+ E L G V + + + L+ + N AI
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAI 63
Query: 62 YCPCDVTD-----------------YPQFEEAFQITLQKLGGLDIVINNAGIFND 99
D+++ + + E G D+++NNA F
Sbjct: 64 TVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYP 118
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 82.6 bits (205), Expect = 1e-20
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
LKGK L+TGG +GIGRA K GA ++I +++ + +Q+ K G + + P
Sbjct: 45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG-VKCVLLP 103
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGI 96
D++D ++ Q T+++LG L+I++NN
Sbjct: 104 GDLSDEQHCKDIVQETVRQLGSLNILVNNVAQ 135
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 83.9 bits (208), Expect = 1e-20
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
L GKVA+VTG A GIG E + GA V D++ + EDL
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA-AEDLKRV----ADKVGGTALT 265
Query: 65 CDVTDYPQFEEAFQITLQKLGG-LDIVINNAGIFNDR--------FWELEVDVNLVGT 113
DVT ++ + GG +DI++NNAGI D+ W+ + VNL+
Sbjct: 266 LDVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAP 323
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 82.0 bits (203), Expect = 2e-20
Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 18/126 (14%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKF---GAKVSICDINDSVGEDLAEQWRTKYGPNRAI 61
L V ++TG + G GRA +L + G+ + + ++S+ L E+ + + +
Sbjct: 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVV 63
Query: 62 YCPCDVTDYPQFEEAFQITLQKLG----GLDIVINNAGIFNDRF-----------WELEV 106
D+ + + ++INNA D
Sbjct: 64 LAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYW 123
Query: 107 DVNLVG 112
+NL
Sbjct: 124 ALNLTS 129
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 81.8 bits (203), Expect = 3e-20
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAE---QWRTKYGPNRAI 61
LK + ALVTGG +GIGRA + GA V+I + E+ A+ + G +A+
Sbjct: 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAE--EEDAQQVKALIEECG-RKAV 103
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI 96
P D++D + LGGLDI+ AG
Sbjct: 104 LLPGDLSDESFARSLVHKAREALGGLDILALVAGK 138
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 79.1 bits (196), Expect = 2e-19
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
+ ALVTGG+ GIGRA E L+ G +V+I N E+ A+ A+ P D+
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNP---EEAAQS-------LGAVPLPTDL 52
Query: 68 TDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
+ + L+ LGGL ++++ A + + W + ++L
Sbjct: 53 EK-DDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVA 105
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 79.2 bits (196), Expect = 2e-19
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 20/123 (16%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M K+ ++TG ++GIG A + G + + + L
Sbjct: 10 MGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLP--------NT 61
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI----------FNDRFWELEVDVNL 110
+ DVTD F+ A + G D ++NNAG+ N+ W+ DVN+
Sbjct: 62 LCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANE--WQRMFDVNV 119
Query: 111 VGT 113
+G
Sbjct: 120 LGL 122
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 79.6 bits (196), Expect = 3e-19
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
K + A+VTGG GIG C++L G V + + + G + E+ + ++
Sbjct: 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS-NHENVVFH 67
Query: 64 PCDVTDYPQFEEAFQITL-QKLGGLDIVINNAGI 96
DVTD + + G LDI++NNAG+
Sbjct: 68 QLDVTDPIATMSSLADFIKTHFGKLDILVNNAGV 101
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 78.5 bits (194), Expect = 6e-19
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 16/127 (12%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFG---AKVSICDINDSVGEDLAEQWRTKYGP 57
L K L+TG +AGIG+A E L+ K+ + E+L + ++
Sbjct: 27 AAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPN 86
Query: 58 NRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI-----------FNDRFWELEV 106
+ D+T + + + Q+ +DI++NNAG D +
Sbjct: 87 AKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATED--IQDVF 144
Query: 107 DVNLVGT 113
D N+
Sbjct: 145 DTNVTAL 151
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 77.4 bits (191), Expect = 9e-19
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 21/108 (19%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
+ +++G A GIG A + L G ++ DI D ++ D+
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD---AEVI----------------ADL 42
Query: 68 TDYPQFEEAF-QITLQKLGGLDIVINNAGIF-NDRFWELEVDVNLVGT 113
+ ++A + + G+D ++ AG+ + V VN G
Sbjct: 43 STAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGA 90
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 75.6 bits (186), Expect = 9e-18
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKV-----SICDINDSVGEDLAEQWRTKYGP 57
M + K+ L+TG ++G GR E L G +V I N S E +A +
Sbjct: 1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAG--FARDND 58
Query: 58 NRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVN 109
DV + A + + G +D++I+NAG F + D+N
Sbjct: 59 VDLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDIN 118
Query: 110 LVGT 113
++ T
Sbjct: 119 VLST 122
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 72.6 bits (179), Expect = 6e-17
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWR---TKYGPNRAI 61
LKGKVALVTG + GIGRA + L GA V+ I+ ++ AE+ G A
Sbjct: 5 LKGKVALVTGASRGIGRAIAKRLANDGALVA---IHYGNRKEEAEETVYEIQSNG-GSAF 60
Query: 62 YCPCDVTDYPQFEEAFQITLQKL------GGLDIVINNAGIFNDRF--------WELEVD 107
++ E + +L DI+INNAGI F ++ V
Sbjct: 61 SIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVS 120
Query: 108 VNLVGT 113
VN
Sbjct: 121 VNAKAP 126
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 72.6 bits (179), Expect = 6e-17
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 16/121 (13%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
+TG +G G A + G + + + + LA + K R +
Sbjct: 18 SHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKT---RVLPL 74
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI-----------FNDRFWELEVDVNLVG 112
DV D A ++ L +INNAG+ +D W+ VD N+ G
Sbjct: 75 TLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDD--WDTMVDTNIKG 132
Query: 113 T 113
Sbjct: 133 L 133
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 71.5 bits (176), Expect = 1e-16
Identities = 24/121 (19%), Positives = 34/121 (28%), Gaps = 20/121 (16%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
V +TG A+GIG A E L + G V D D+ T G A+ +
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQ---ADIEADLSTPGGRETAV--AAVL 56
Query: 68 TDYPQ-----FEEAFQITLQKLGGLDIVINNAGIFN----------DRFWELEVDVNLVG 112
A GL + +N G+ V V +
Sbjct: 57 DRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIA 116
Query: 113 T 113
Sbjct: 117 A 117
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 70.0 bits (172), Expect = 6e-16
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M KV LVTG ++G GRA E + G V +DL + P+RA
Sbjct: 1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEA 55
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAG 95
DVTD + + L + G +D+++NNAG
Sbjct: 56 ISLDVTDGERIDVVAADVLARYGRVDVLVNNAG 88
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 69.7 bits (171), Expect = 7e-16
Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 18/119 (15%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSI--CDINDSVGEDLAEQWRTKYGPNRAIYCPC 65
+VTG GIG ++L+K I + +L +R P
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-----KDSRVHVLPL 58
Query: 66 DVTDYPQFEEAFQITLQKLG--GLDIVINNAGIFNDRFWELEVD---------VNLVGT 113
VT + + +G GL ++INNAG+ E + VN
Sbjct: 59 TVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSV 117
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 68.7 bits (169), Expect = 7e-16
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)
Query: 10 ALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTD 69
L+TG G+G A+ L G + + +LA + A P D+ D
Sbjct: 3 VLITGATGGLGGAFARALK--GHDLLLSGRRAGALAELAREVG-------ARALPADLAD 53
Query: 70 YPQFEEAFQITLQKLGGLDIVINNAGI--------FNDRFWELEVDVNLVGT 113
E + L++ G LD++++ G E + +L+
Sbjct: 54 ----ELEAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTA 101
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 69.3 bits (170), Expect = 1e-15
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLK-FGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
VALVTGG GIG A +L + F V + + + G+ +Q + + G + +
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE-GLS-PRFHQ 60
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF--------WELEVDVNLVGT 113
D+ D ++ GGLD+++NNAGI E+ + N GT
Sbjct: 61 LDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGT 117
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 67.6 bits (165), Expect = 5e-15
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
+KGK A+V G +G L GA+V +C + A+ ++ N
Sbjct: 113 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVT 172
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAG----IFNDRFWELEVDVNLVGT 113
+ D EA + G V + W+ E + +V
Sbjct: 173 ---AAETADDASRAEA-------VKGAHFVFTAGAIGLELLPQAAWQNESSIEIVAD 219
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 65.6 bits (161), Expect = 2e-14
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 9 VALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVT 68
+ LVTG AG G ++ G KV ++L ++ DV
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDN-----LYIAQLDVR 56
Query: 69 DYPQFEEAFQITLQKLGGLDIVINNAGI-----------FNDRFWELEVDVNLVGT 113
+ EE + +DI++NNAG+ D WE +D N G
Sbjct: 57 NRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVED--WETMIDTNNKGL 110
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 65.3 bits (160), Expect = 2e-14
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 16/114 (14%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
+ ++TG ++G+G + G + ++S + G Y D+
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVG-----YRARDL 56
Query: 68 TDYPQFEEAFQITLQKLGGLDIVINNAGI-FNDRFWELE-------VDVNLVGT 113
+ + E+ F+ Q V+++AG + E + ++ NL
Sbjct: 57 ASHQEVEQLFE---QLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSA 107
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 63.2 bits (154), Expect = 2e-13
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 17/119 (14%)
Query: 8 KVALVTGGAAGIGRAYCEELLKF---GAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
L+TG G+G + LL + N ++L + +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LAKNHS--NIHILE 78
Query: 65 CDVTDYPQFEEAFQITLQKLG--GLDIVINNAGIFNDR---------FWELEVDVNLVG 112
D+ ++ +++ GL+++ NNAGI + N V
Sbjct: 79 IDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVV 137
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 57.3 bits (139), Expect = 1e-11
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 32/115 (27%)
Query: 7 GKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCD 66
L+ G + +G A E L K A+V G + D
Sbjct: 3 AMKILLIGASGTLGSAVKERLEK-KAEVIT------AGR-------------HSGDVTVD 42
Query: 67 VTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDR--------FWELEVDVNLVGT 113
+T+ ++ + +++G +D +++ G + + L G
Sbjct: 43 ITNIDSIKKMY----EQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQ 93
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 57.6 bits (140), Expect = 2e-11
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 21/118 (17%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
+ ++TG +G+G EL + GA V + + GE A +
Sbjct: 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAART-----MAGQVEVR 67
Query: 64 PCDVTDYP---QFEEAFQITLQKLGGLDIVINNAGIFNDRF------WELEVDVNLVG 112
D+ D +F + G D++INNAGI + +E ++ N +G
Sbjct: 68 ELDLQDLSSVRRFADGVS-------GADVLINNAGIMAVPYALTVDGFESQIGTNHLG 118
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 54.9 bits (133), Expect = 2e-10
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 1 MVMDLKGKVALVTGG------AAGIGRAYCEELLKFGAKVSICDINDSVG---EDLAEQW 51
M L+G+ +V G A GI R+ L + GA++ + + +LA
Sbjct: 1 MNFSLEGRNIVVMGVANKRSIAWGIARS----LHEAGARLIFTYAGERLEKSVHELAGTL 56
Query: 52 RTKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
N +I PCDVT+ + E F +++G + +
Sbjct: 57 ----DRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIA 92
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 54.3 bits (131), Expect = 3e-10
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 22/113 (19%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M M K LVTG A +GR E L + + D++
Sbjct: 1 MAM----KRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPL-----------DPAGPNE 45
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELEVDVNLVGT 113
CD+ D G D +++ GI ++ +E + N++G
Sbjct: 46 ECVQCDLADANAVNAMVA-------GCDGIVHLGGISVEKPFEQILQGNIIGL 91
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 53.1 bits (128), Expect = 9e-10
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 18/103 (17%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTDY 70
LVTG A G+G A L +V + D +G CD+ D
Sbjct: 6 LVTGAAGGVGSAIRPHLGTLAHEVRLSD-IVDLGAA----------EAHEEIVACDLADA 54
Query: 71 PQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELEVDVNLVGT 113
+ + D +I+ G+ +R W + N++G
Sbjct: 55 QAVHDLVK-------DCDGIIHLGGVSVERPWNDILQANIIGA 90
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 53.2 bits (128), Expect = 1e-09
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 8 KVALVTGGAAGIGRAYCEELLKF---GAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC- 63
V L+TG ++GIG L KV + L E R P ++
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAGI 96
DV D A + + G +D+++ NAG+
Sbjct: 63 QLDVRDSKSVAAARERVTE--GRVDVLVCNAGL 93
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 52.6 bits (127), Expect = 1e-09
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 17/98 (17%)
Query: 3 MDLKGKVALVTGG------AAGIGRAYCEELLKFGAKVSICDINDSVG---EDLAEQWRT 53
++L+ K ++ G A G+ + L + GAK+ + E L EQ
Sbjct: 28 VNLENKTYVIMGIANKRSIAFGVAKV----LDQLGAKLVFTYRKERSRKELEKLLEQL-- 81
Query: 54 KYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
A DV + F+ + +G +D V
Sbjct: 82 --NQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVY 117
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty
acid biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 52.2 bits (126), Expect = 2e-09
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 1 MVMDLKGKVALVTGG------AAGIGRAYCEELLKFGAKVSICDINDSVG---EDLAEQW 51
+ +DL GK ALV G I L + GA+V++ + + E LAE
Sbjct: 2 LTVDLSGKKALVMGVTNQRSLGFAIAAK----LKEAGAEVALSYQAERLRPEAEKLAEAL 57
Query: 52 RTKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
A+ DVT + + F + GGLD ++
Sbjct: 58 ------GGALLFRADVTQDEELDALFAGVKEAFGGLDYLV 91
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 49.2 bits (118), Expect = 2e-08
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 3 MDLKGKVALVTGG------AAGIGRAYCEELLKFGAKVSICDINDSVG---EDLAEQWRT 53
M ++GK ++ G A GI +A + GA+V++ ++++ + LAE
Sbjct: 26 MLMEGKKGVIIGVANDKSLAWGIAKA----VCAQGAEVALTYLSETFKKRVDPLAESL-- 79
Query: 54 KYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
+ PCDV+D + F++ ++ G LD V+
Sbjct: 80 ----GVKLTVPCDVSDAESVDNMFKVLAEEWGSLDFVV 113
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 47.6 bits (114), Expect = 7e-08
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 5 LKGKVALVTGG------AAGIGRAYCEELLKFGAKVSICDINDSVG---EDLAEQWRTKY 55
L+GK L+ G A GI +A + GA+++ D++ E LAE+
Sbjct: 29 LQGKRGLILGVANNRSIAWGIAKA----AREAGAELAFTYQGDALKKRVEPLAEEL---- 80
Query: 56 GPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
+ CDV D + F+ +K G LD ++
Sbjct: 81 --GAFVAGHCDVADAASIDAVFETLEKKWGKLDFLV 114
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A*
1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A*
1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 47.2 bits (113), Expect = 1e-07
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 19/96 (19%)
Query: 5 LKGKVALVTGG------AAGIGRAYCEELLKFGAKVSICDINDSVG---EDLAEQWRTKY 55
L GK LVTG A GI +A + + GA+++ ND + E+ A Q
Sbjct: 7 LSGKRILVTGVASKLSIAYGIAQA----MHREGAELAFTYQNDKLKGRVEEFAAQL---- 58
Query: 56 GPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
I CDV + + F + D +
Sbjct: 59 --GSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFV 92
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 46.4 bits (111), Expect = 2e-07
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 5 LKGKVALVTGG------AAGIGRAYCEELLKFGAKVSIC---DINDSVGEDLAEQWRTKY 55
L GK L+TG A GI +A E GA+++ D V E L ++
Sbjct: 24 LAGKKILITGLLSNKSIAYGIAKAMHRE----GAELAFTYVGQFKDRV-EKLCAEF---- 74
Query: 56 GPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
N A PCDV + ++ F + GLD ++
Sbjct: 75 --NPAAVLPCDVISDQEIKDLFVELGKVWDGLDAIV 108
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 46.5 bits (111), Expect = 2e-07
Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 20/101 (19%)
Query: 1 MVMD-LKGKVALVTGG------AAGIGRAYCEELLKFGAKVSICDINDSVG---EDLAEQ 50
+ M L+GK AL+TG A GI ++ + GA+++ + ++A+
Sbjct: 14 VFMGLLEGKRALITGVANERSIAYGIAKS----FHREGAQLAFTYATPKLEKRVREIAKG 69
Query: 51 WRTKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
+ + CDV+ + + + G LDI++
Sbjct: 70 F------GSDLVVKCDVSLDEDIKNLKKFLEENWGSLDIIV 104
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A
{Burkholderia pseudomallei 1710B}
Length = 271
Score = 46.4 bits (111), Expect = 2e-07
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 5 LKGKVALVTGG------AAGIGRAYCEELLKFGAKVSICDINDSVG---EDLAEQWRTKY 55
L GK L+TG A GI +A E GA+++ + D + A ++
Sbjct: 12 LDGKRILLTGLLSNRSIAYGIAKACKRE----GAELAFTYVGDRFKDRITEFAAEF---- 63
Query: 56 GPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
+ PCDV D Q + F LD ++
Sbjct: 64 --GSELVFPCDVADDAQIDALFASLKTHWDSLDGLV 97
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 46.4 bits (111), Expect = 2e-07
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 5 LKGKVALVTGG------AAGIGRAYCEELLKFGAKVSICDINDSVG---EDLAEQWRTKY 55
LKGK L+ G A GI ++ GA ++ +N+S+ +A++
Sbjct: 4 LKGKKGLIVGVANNKSIAYGIAQS----CFNQGATLAFTYLNESLEKRVRPIAQEL---- 55
Query: 56 GPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
N DV+ F+ + + LG LD ++
Sbjct: 56 --NSPYVYELDVSKEEHFKSLYNSVKKDLGSLDFIV 89
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 45.4 bits (108), Expect = 5e-07
Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 17/106 (16%)
Query: 10 ALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTD 69
V G +G + G + + S + LA ++ D
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYL--------EPECRVAEMLD 67
Query: 70 YPQFEEAFQITLQKLGGLDIVINNAGIF--NDRFWELEVDVNLVGT 113
+ E A + GLD VI +AG + R W+ EV L T
Sbjct: 68 HAGLERALR-------GLDGVIFSAGYYPSRPRRWQEEVASALGQT 106
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 42.8 bits (101), Expect = 4e-06
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFG-AKVSICDIND----SVGEDLAEQWRTKYGPNR 59
+ LV GGA IG+A +E+ K K+ + DI++ + D+ + Y
Sbjct: 33 VSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDISENNMVELVRDIRSSF--GYINGD 90
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNA 94
D+ G D V+N +
Sbjct: 91 FQTFALDIGSIEYDAFIKAD-----GQYDYVLNLS 120
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 42.6 bits (101), Expect = 4e-06
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICD-INDSVGEDLAE--QWRTKYGPNR 59
+ + KV L+TG A IG E LLK KV D +L E ++ +
Sbjct: 23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSN 82
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF----WELEVDVNLVGT 113
+ D+ + A G+D V++ A + + N+ G
Sbjct: 83 FKFIQGDIRNLDDCNNACA-------GVDYVLHQAALGSVPRSINDPITSNATNIDGF 133
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 42.6 bits (101), Expect = 5e-06
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 14/118 (11%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICD-INDSVGEDLAE--QWRTKYGPNR 59
+ K L+TG A IG E+LLK V D + +L E + +R
Sbjct: 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 80
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRF----WELEVDVNLVGT 113
+ D+ D E+ + G+D V++ A + + N+ G
Sbjct: 81 FCFIEGDIRDLTTCEQVMK-------GVDHVLHQAALGSVPRSIVDPITTNATNITGF 131
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 40.9 bits (95), Expect = 2e-05
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 11/107 (10%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAI-YCPCD 66
VAL+ G IG + E L + G +A + R + + I Y CD
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKV---YG--VARRTRPAWHEDNPINYVQCD 56
Query: 67 VTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELEVDVNLVGT 113
++D + L L + V E + N
Sbjct: 57 ISDPDDSQAK----LSPLTDVTHVFYVTWANRSTEQEN-CEANSKMF 98
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 40.4 bits (95), Expect = 3e-05
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 19/106 (17%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTDY 70
LVTG + IG L + K ++ + + + DV++
Sbjct: 3 LVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT-----------GGIKFITLDVSNR 51
Query: 71 PQFEEAFQITLQKLGGLDIVINNAGIFNDR---FWELEVDVNLVGT 113
+ + A + +D + + AGI + + L VN+ GT
Sbjct: 52 DEIDRAV-----EKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGT 92
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 40.6 bits (95), Expect = 3e-05
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 6 KGKVALVTGGAAG-IGRAYCEELLKFGAKV 34
K K L+TG G IG + LL+ GAKV
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKV 504
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 39.8 bits (93), Expect = 4e-05
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 40/127 (31%)
Query: 1 MVMDLKGKVALVTGG------AAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTK 54
+DL+G+ A V G I + GA+V++ +G +
Sbjct: 3 FPIDLRGQTAFVAGVADSHGYGWAIAKHLASA----GARVALGTWPPVLGLFQKSLQSGR 58
Query: 55 YGPNRA----------------------IYCPCDVTDYPQF--------EEAFQITLQKL 84
+R P D+ D ++ +E Q L
Sbjct: 59 LDEDRKLPDGSLIEFAGVYPLDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDL 118
Query: 85 GGLDIVI 91
G +DI++
Sbjct: 119 GNIDILV 125
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 39.5 bits (93), Expect = 5e-05
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGA-KVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
+ K + G A G+G A L+ G K+ + D++ S + LA+ G +
Sbjct: 124 NAKLDSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV- 181
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVIN 92
D E+ + D V+N
Sbjct: 182 ----GVDARGIEDV-------IAAADGVVN 200
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 39.8 bits (94), Expect = 5e-05
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG--EDLAEQWRTKYGPN 58
M + L+TGGA IG L+ G +V++ D + V + P
Sbjct: 1 MQRNTLKHRILITGGAGFIGGHLARALVASGEEVTVLD-DLRVPPMIPPEGTGKFLEKPV 59
Query: 59 RAIYCPCDVTD 69
+ D++D
Sbjct: 60 LELEE-RDLSD 69
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 38.9 bits (91), Expect = 8e-05
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 32/123 (26%)
Query: 1 MVMDLKGKVALVTGGA--AGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPN 58
+ +DL+GK A + G A G G A + L GA++ + ++ R K+ +
Sbjct: 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQS 61
Query: 59 RA----------------------IYCPCDV--------TDYPQFEEAFQITLQKLGGLD 88
R P DV + +EA + Q G +D
Sbjct: 62 RVLPDGSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSID 121
Query: 89 IVI 91
I++
Sbjct: 122 ILV 124
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 38.9 bits (91), Expect = 9e-05
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGP 57
L K +V G A G G+A + GAKV I + +LAE K
Sbjct: 361 PLASKTVVVIG-AGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALS 413
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 38.7 bits (91), Expect = 1e-04
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 4 DLKGKVALV--TGGAAGIGRAYCEELLKFGAK-VSICDINDSVGE---DLAEQWRTKYGP 57
D++GK ++ GGAA A + G K + + + D E A++
Sbjct: 145 DMRGKTMVLLGAGGAA---TAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDC 201
Query: 58 NRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVIN 92
+ D+ D F EA L DI+ N
Sbjct: 202 VVTVT---DLADQHAFTEA-------LASADILTN 226
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 38.4 bits (90), Expect = 2e-04
Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVG--EDLAEQWRTKYGPNRAIYCPCDVT 68
+TG IG E LL+ G KV D N + G E L + + +
Sbjct: 25 FITGICGQIGSHIAELLLERGDKVVGID-NFATGRREHLKDH-------PNLTFVEGSIA 76
Query: 69 DYPQFEEAFQITLQKLGGLDIVINNAG-IFNDRFWELEVDVNLVGT 113
D+ + D V++ A + W + N VG
Sbjct: 77 DHALVNQLI-----GDLQPDAVVHTAASYKDPDDWYNDTLTNCVGG 117
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 37.6 bits (88), Expect = 2e-04
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAK-VSICDINDSVGEDLAEQWRTKYGPNRAIY 62
D+ GK + GA G A C + G K +SI + D + +
Sbjct: 151 DIIGKKMTI-CGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKA 209
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVIN 92
D+ D+ Q + + I N
Sbjct: 210 QLFDIEDHEQLRKE-------IAESVIFTN 232
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK
triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1
MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A*
2gn9_A* 2gna_A*
Length = 344
Score = 37.3 bits (87), Expect = 3e-04
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFG--AKVSICDINDSVGEDLAEQW--RTKYG 56
M L + L+TGG G+ + ++L K+ + D +Q ++
Sbjct: 16 QNM-LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYS------RDELKQSEMAMEFN 68
Query: 57 PNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNA 94
R + DV D + A + G+DI I+ A
Sbjct: 69 DPRMRFFIGDVRDLERLNYALE-------GVDICIHAA 99
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 37.3 bits (87), Expect = 4e-04
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 22/118 (18%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGA-KVSICDINDSVG--EDLAEQWRTKYGPNR 59
L +V GGA +G + LL+ G +V + D N ++ + P
Sbjct: 28 SKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVD-NLLSAEKINVPDH------PAV 80
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIF-NDRFWE---LEVDVNLVGT 113
+TD D V + A N + + N + T
Sbjct: 81 RFSE-TSITDDALLASLQD-------EYDYVFHLATYHGNQSSIHDPLADHENNTLTT 130
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A*
2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A*
2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A*
3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 36.8 bits (86), Expect = 4e-04
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 19/101 (18%)
Query: 1 MVMDLKGKVALVTGG------AAGIGRAYCEELLKFGAKVSI-CDINDSVGEDLAEQWRT 53
M L GK LV+G A I R E+ GA++ + + + + ++
Sbjct: 1 MTGLLDGKRILVSGIITDSSIAFHIARVAQEQ----GAQLVLTGFDRLRLIQRITDR--- 53
Query: 54 KYGPNRAIYCPCDVTDYPQFEEAFQITLQKLG---GLDIVI 91
P +A DV + + +G LD V+
Sbjct: 54 --LPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVV 92
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 36.8 bits (86), Expect = 5e-04
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 26/114 (22%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M + K+ VTGG +G+ E + G I + + N
Sbjct: 1 MSL----KI-AVTGGTGFLGQYVVESIKNDGNTPIILT-RSIGNKAI----------NDY 44
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFN-DRFWELEVDVNLVGT 113
Y D T + L +D V++ A E N + T
Sbjct: 45 EYRVSDYTLEDLINQ--------LNDVDAVVHLAATRGSQGKIS-EFHDNEILT 89
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 36.8 bits (86), Expect = 6e-04
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
+K K ++ G A G RA EL K + I + E LA++ +
Sbjct: 125 RVKDKNIVIYG-AGGAARAVAFELAK-DNNIIIANRTVEKAEALAKEI-----AEKLNKK 177
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVIN 92
+ + + L G+DI+IN
Sbjct: 178 FGEEVKFSGLDVD-------LDGVDIIIN 199
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 36.6 bits (85), Expect = 7e-04
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICD 38
M+ K L+TGGA +G ++L+ G +V++ D
Sbjct: 23 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVD 58
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 36.5 bits (85), Expect = 7e-04
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 16/106 (15%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTDY 70
L+ G IG ++L K ++ + N + + D+
Sbjct: 6 LIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDV--------VNSGPFEVVNALDF 57
Query: 71 PQFEEAFQITLQKLGGLDIVINNAGIFNDRFWE---LEVDVNLVGT 113
Q E ++ + + A + + + D+N+
Sbjct: 58 NQIEHLV-----EVHKITDIYLMAALLSATAEKNPAFAWDLNMNSL 98
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 36.5 bits (85), Expect = 8e-04
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
K+ ++ G++G R E L + + I E+ ++ Y
Sbjct: 4 KICVI--GSSGHFRYALEGLDEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKY----- 56
Query: 68 TDY 70
++
Sbjct: 57 NNW 59
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 36.0 bits (84), Expect = 8e-04
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 22/89 (24%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
++K K LV G A G RA L+K GAKV + + LA++
Sbjct: 126 EVKEKSILVLG-AGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK------------F 172
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVIN 92
P +V + P+ + + + +++N
Sbjct: 173 PLEVVNSPE---------EVIDKVQVIVN 192
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 36.1 bits (83), Expect = 0.001
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAE 49
++TG +G+ +L + E+L
Sbjct: 4 VITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELES 42
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 35.6 bits (82), Expect = 0.001
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 45/136 (33%)
Query: 1 MVMDLKGKVALVTGGA--AGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPN 58
+ +DL+GK A V G A G G A C+ L GA+V + +++ +
Sbjct: 3 LPVDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQD 62
Query: 59 RA-----------------------------------IYCPCDVTDYPQF--------EE 75
P +V+ ++ E
Sbjct: 63 SFYAQEPSSKVAAEAAEKPVDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISE 122
Query: 76 AFQITLQKLGGLDIVI 91
+ +G +DI++
Sbjct: 123 VAEAVRADVGQIDILV 138
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 35.6 bits (82), Expect = 0.001
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAK----VSICDINDSVGEDLAEQWRTKYGPNRAIYCPCD 66
++TGG G G + L GA+ S I +WR G + + +
Sbjct: 1888 VITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRR-QGV-QVLVSTSN 1945
Query: 67 VTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRFWE 103
+ +LG + V N A + D E
Sbjct: 1946 ASSLDGARSLIT-EATQLGPVGGVFNLAMVLRDAVLE 1981
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 35.7 bits (82), Expect = 0.002
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
MD K +V L+ GG IG+ + G + + V Q + A
Sbjct: 1 MDKKSRV-LIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKL 59
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFND 99
+ D+ + +A + +D+VI+
Sbjct: 60 IEASLDDHQRLVDALK-------QVDVVISALAGGVL 89
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 35.4 bits (82), Expect = 0.002
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTDY 70
+ G A +GR + L+K G + + D+ + D++
Sbjct: 18 AIIGAAGMVGRKLTQRLVKDG-SLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAP 76
Query: 71 PQFEEAFQITLQKLGGLDIVINNAGIFN---DRFWELEVDVNLVGT 113
+ E+ + D++ + A I + + ++ +NL GT
Sbjct: 77 GEAEKLVE------ARPDVIFHLAAIVSGEAELDFDKGYRINLDGT 116
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 35.1 bits (81), Expect = 0.002
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICD 38
+K K L+ G IG + +L+
Sbjct: 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGM 55
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 34.8 bits (81), Expect = 0.002
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGP 57
LKG ++ GA G GRA L + G +V + + LAE++ + P
Sbjct: 114 PLKGPALVL--GAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVP 165
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 34.6 bits (80), Expect = 0.003
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKF--GAK-VSICDINDSVGEDLAEQWRTKY 55
+ D K + ALV G I + L K A+ + +CDI+ + + E+ +
Sbjct: 8 PITDRKIRFALV--GCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARG 63
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 34.4 bits (80), Expect = 0.003
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 3 MDLKGKVALVTG-GAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAI 61
L+G V G G +A C++L GAK+ + D+N + + AI
Sbjct: 169 DSLEGLAVSVQGLGNVA--KALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAI 226
Query: 62 Y-CPCDV 67
Y CD+
Sbjct: 227 YGVTCDI 233
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 34.5 bits (79), Expect = 0.003
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 5 LKGKVALVTGGAAG-IGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
+K K+ + G G IG + LK G + +S L ++++ AI
Sbjct: 10 MKSKILIF--GGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQ----SLGAIIV 63
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAG 95
++ ++ + E + +D+VI+
Sbjct: 64 KGELDEHEKLVELMK-------KVDVVISALA 88
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 34.2 bits (79), Expect = 0.004
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLKFGAKVSICDI 39
+ +TG I L G V D
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDW 61
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 34.1 bits (79), Expect = 0.004
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAK-VSICDINDSVGEDLAEQWRTKYGPNRAIY 62
L GK LV G A G R LL A+ + + + E L + +
Sbjct: 138 TLDGKRILVIG-AGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS------ 190
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVIN 92
+ + +L DI+IN
Sbjct: 191 AYFSLAEAE----------TRLAEYDIIIN 210
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 34.1 bits (77), Expect = 0.005
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 18/92 (19%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
M V ++ G+ + R + L G KV++ + L+ G +
Sbjct: 1 MAT---KSVLML--GSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA------GVQHS 49
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVIN 92
DV D + + D+VI+
Sbjct: 50 TPISLDVNDDAALDAE-------VAKHDLVIS 74
>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure
initiative, structural genomics, midwest for structural
genomics (MCSG); 1.90A {Shigella flexneri 2a str}
Length = 382
Score = 33.9 bits (78), Expect = 0.006
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 15 GAAGIGRAYCEELL-KFGAKVSICDINDSVGEDLAEQ 50
GA IGR + +LL G +++ D+N V + L +
Sbjct: 7 GAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNAR 43
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 32.4 bits (74), Expect = 0.016
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 17/84 (20%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICD----------------INDSVGEDLAEQWRTK 54
+V GG G A L K +V I D + D +W+
Sbjct: 15 MVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL 74
Query: 55 YGPNRAIYCPCDVTDYPQFEEAFQ 78
G + +Y D+ D+ E+F+
Sbjct: 75 TGKSIELYV-GDICDFEFLAESFK 97
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 32.0 bits (73), Expect = 0.031
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 11 LVTGGAAGIGRAYCEELLKF-GAK----VSICDINDSVGEDLAEQWRTKYGPNRAIYCPC 65
LVTGG +G L+ G + VS S +L Q YG ++ C
Sbjct: 534 LVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTA-YGAEVSLQA-C 591
Query: 66 DVTDYPQFEEAFQ--ITLQKLGGLDIVINNAGIFNDRFWE 103
DV D + L V++ AG+ +D E
Sbjct: 592 DVADRETLAKVLASIPDEHPLTA---VVHAAGVLDDGVSE 628
>3qi7_A Putative transcriptional regulator; periplasmic binding
protein-like, structural genomics, joint for structural
genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Length = 371
Score = 31.7 bits (71), Expect = 0.033
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 21 RAYCEEL-LKFGAKVSICDINDSVGEDLAEQ--------WRTKYGPNRAIYCPCDVTDYP 71
+ C+ + L F +V+ +IN ++ +Q KYG + ++ + D
Sbjct: 181 KETCKNIGLPF-VQVNTPNINTEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEV 239
Query: 72 QFEEAFQ 78
+A +
Sbjct: 240 ILTKALE 246
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase,
carbohydrate metabolism, stress response; HET: NAP ADP
BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 31.5 bits (72), Expect = 0.037
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 4 DLKGKVALVTGGAAG-IGRAYCEELLKFG-AKVSICD 38
++G++ +VTGG AG IG + L G + + D
Sbjct: 43 GIEGRMIIVTGG-AGFIGSNIVKALNDKGITDILVVD 78
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 31.1 bits (71), Expect = 0.052
Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 19/121 (15%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFG--AKVSICD-------INDSVGEDLAEQWRTK 54
+L+ + L+TGGA +G + AKV + D +++ L ++
Sbjct: 7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGH-FKNL 65
Query: 55 YGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRFW--ELEVDVNLVG 112
G + D+ + + D + + A + + EL + N
Sbjct: 66 IGFKGEVI-AADINNPLDLRRLEK------LHFDYLFHQAAVSDTTMLNQELVMKTNYQA 118
Query: 113 T 113
Sbjct: 119 F 119
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics;
1.70A {Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 30.8 bits (70), Expect = 0.058
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKF-GAK-VSICDINDSVGEDLAEQWRTKY 55
M VA + G + K K V+ + E +++
Sbjct: 2 MYNPVGVAAI--GLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAG 54
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 31.0 bits (70), Expect = 0.063
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLA-EQWRTKYGPNRAI 61
M + ++ L+ G IGR + L G + + + Q + + A
Sbjct: 1 MGSRSRI-LLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGAN 59
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAG 95
+ D+ EA + +D+VI+ G
Sbjct: 60 IVHGSIDDHASLVEAVK-------NVDVVISTVG 86
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 31.1 bits (70), Expect = 0.064
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 5 LKGKVALVTGGAAG-IGRAYCEELLKFGAKV 34
+GK AL+TG AG IG + LL GAKV
Sbjct: 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKV 680
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 31.1 bits (70), Expect = 0.068
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 5 LKGKVALVTGGAAG-IGRAYCEELLKFGAKV 34
K K L+TG G IG + LL+ GAKV
Sbjct: 673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKV 703
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion,
hydrolase; HET: NAD; 2.3A {Flavobacterium
meningosepticum} PDB: 2ixb_A*
Length = 444
Score = 30.8 bits (69), Expect = 0.075
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 8 KVALVTGGAAGIGRAYCEELLKF-GAK-VSICDINDSVGEDLAEQWRTKYGPNRAIYCPC 65
++A + G+ + E + + + V+ D + + E + K G A
Sbjct: 22 RIAFI--AVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-KNGKKPAKVFGN 78
Query: 66 DVTDY 70
DY
Sbjct: 79 GNDDY 83
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 30.8 bits (69), Expect = 0.084
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGE---DLAEQWRT 53
+L + ++ G G+ L + G I + V E D WR
Sbjct: 105 NLTERPIVIGFGPCGLFAGL--VLAQMGFNPIIVERGKEVRERTKDTFGFWRK 155
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 30.5 bits (70), Expect = 0.085
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICD 38
M KG + LVTGGA IG ELL G V I D
Sbjct: 2 MSTKGTI-LVTGGAGYIGSHTAVELLAHGYDVVIAD 36
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 30.6 bits (70), Expect = 0.087
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 23/110 (20%)
Query: 3 MDLKGKVALVTG-GAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAI 61
L GK + G G G A ++L + GAK + G I
Sbjct: 226 DTLVGKTVALAGFGNVAWGAA--KKLAELGAKAVTL--SGPDG---------------YI 266
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAG---IFNDRFWELEVDV 108
Y P +T + ++ + + G ++ W +VD+
Sbjct: 267 YDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDI 316
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 30.1 bits (68), Expect = 0.11
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 8 KVALVTGGAAGIGRAYCEELLKF--GAK-VSICDINDSVGEDLAEQW 51
+ + G G ++ A+ V+ CD N+ V E +++
Sbjct: 4 RFGIC--GLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY 48
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 29.9 bits (68), Expect = 0.11
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 6 KGKVALVTGGAAG-IGRAYCEELLKFGAKV--SICDINDSVGEDLAEQWRTKYGPNRAIY 62
+G + LVTG A G + E+LL+ G KV + + +L ++W KY
Sbjct: 10 EGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASK--LANLQKRWDAKYPGRFETA 66
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFN 98
D+ ++E + G V + A + +
Sbjct: 67 VVEDMLKQGAYDEVIK-------GAAGVAHIASVVS 95
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 30.0 bits (68), Expect = 0.12
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 22/87 (25%)
Query: 8 KVALVTGGAAGIGRAYCEELLKF--GAK-VSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
K +V G IG + L G + V++CDI A+ KY Y
Sbjct: 25 KAGIV--GIGMIGSDHLRRLANTVSGVEVVAVCDIV----AGRAQAALDKYAIEAKDY-- 76
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVI 91
DY + +++VI
Sbjct: 77 ---NDY---HDLI-----NDKDVEVVI 92
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 29.7 bits (67), Expect = 0.16
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICD 38
+ + K+ LVTGGA IG EL++ G + D
Sbjct: 5 LQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVAD 42
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 29.4 bits (67), Expect = 0.17
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAK-VSICDINDSVGEDLAEQ 50
++ L+ G A G + EL K +++ + S + +
Sbjct: 114 GIEDAYILILG-AGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLN 160
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 29.6 bits (66), Expect = 0.17
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 3 MDLKGKVALVTGGAAG-IGRAYCEELLKFGAKVSI--CDINDSVGEDLAEQWRTKYGPNR 59
LK K L+ GG G +G +L+ G K+++ D++ S+ + + K P+
Sbjct: 9 HQLKDKRILLIGG--GEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDY 66
Query: 60 AIYCPCDVTDYPQFEEAFQITLQK 83
+ + +
Sbjct: 67 REDAKRFINPNWDPTKNEIYEYIR 90
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 29.4 bits (67), Expect = 0.19
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTDY 70
+VTGGA IG ++L++ G +V + D N S G R ++ A D+ DY
Sbjct: 4 VVTGGAGFIGSHLVDKLVELGYEVVVVD-NLSSG-------RREFVNPSAELHVRDLKDY 55
Query: 71 PQFEEAF 77
Sbjct: 56 SWGAGIK 62
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 29.4 bits (67), Expect = 0.20
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 4 DLKGKVALVTG-GAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
L G LV G GA G + + GA++ + D + T +
Sbjct: 172 SLDGLTVLVQGLGAVG--GSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLS 229
Query: 63 CPCDV 67
PCDV
Sbjct: 230 TPCDV 234
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 29.2 bits (66), Expect = 0.23
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 23/91 (25%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKF-GAK-VSICDINDSVGEDLAEQWRTKYGPNRA 60
M L ++AL GA IG + + + V I D + A++ G
Sbjct: 1 MSLTLRIALF--GAGRIGHVHAANIAANPDLELVVIADPF----IEGAQRLAEANG---- 50
Query: 61 IYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
+E F +D ++
Sbjct: 51 ------AEAVASPDEVF-----ARDDIDGIV 70
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 29.2 bits (66), Expect = 0.24
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 1 MVMDLKGKVALVTGGAAGIG-RAYCEELLKF-GAK-VSICDINDSVGEDLAEQWRTKY 55
M + K ++ +V G GI +A+ L + + E WR Y
Sbjct: 1 MSLK-KLRIGVV--GLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY 55
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 29.1 bits (65), Expect = 0.25
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLKFGAKVSI--CDINDSVGEDLAEQWRTKYGPNRAIYC 63
+ K+ L+ G IGR +K G + + E+ Y I
Sbjct: 2 ENKI-LILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVINNAG 95
D+ D+ +A + +DIVI AG
Sbjct: 61 EGDINDHETLVKAIK-------QVDIVICAAG 85
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 29.0 bits (65), Expect = 0.26
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 15/87 (17%)
Query: 16 AAGIGRAYCEELLKFGAKVSICDINDS---VGEDLAEQWRTKYGPNRAI-YCPCDVTDYP 71
G G+ EL G V+ DIN + E A + + +
Sbjct: 38 GCGSGK-ISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS 96
Query: 72 QFEEAFQITLQKLGGLDIVINNAGIFN 98
+ +F D + A + +
Sbjct: 97 FHDSSF----------DFAVMQAFLTS 113
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 29.0 bits (66), Expect = 0.27
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLKFG-AKVSICDINDSVGEDLAEQW 51
K +V G + G+ +A G K+ I N G+ LA +
Sbjct: 118 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 163
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 29.1 bits (66), Expect = 0.29
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 2 VMDLKGKVALVTGGAAGI-GRAYCEELLKFGAKVSICDINDSVGEDLAEQ 50
+ + K LV G G A L K GA V++ D A+
Sbjct: 4 ITTFENKKVLVLG--LARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQS 51
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 28.8 bits (65), Expect = 0.30
Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 23/94 (24%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKF--GAK-VSICDINDSVGEDLAEQWRTKYGP 57
+ + A++ G +G + L+ G K V+ C ++ + E + + G
Sbjct: 3 VTTRKPLRAAII--GLGRLGERHARHLVNKIQGVKLVAACALD----SNQLEWAKNELGV 56
Query: 58 NRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
Y +++ +D +
Sbjct: 57 ETT---------YTNYKDMI-----DTENIDAIF 76
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 28.6 bits (65), Expect = 0.31
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICD 38
LVTGGA IG E+LL G +V++ D
Sbjct: 4 LVTGGAGFIGSHIVEDLLARGLEVAVLD 31
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 28.8 bits (65), Expect = 0.33
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLK-FGAKV 34
K ++T GA+ + + L K G +
Sbjct: 164 GEKAFVMTAGASQLCKLII-GLAKEEGFRP 192
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion
effector protein, structural genomics; NMR {Bordetella
parapertussis}
Length = 127
Score = 28.2 bits (62), Expect = 0.33
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 41 DSVGEDLAEQWRTKYG-PNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIV 90
D++ L QW ++G P A DV PQ++E + ++ GLD +
Sbjct: 81 DALYSHLEAQWAKQHGTPPTA----SDVVGMPQWQEYTAMLRERFAGLDTI 127
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 28.6 bits (65), Expect = 0.35
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICD 38
+ KV LVTGGA IG ELL+ G + D
Sbjct: 1 MAEKV-LVTGGAGYIGSHTVLELLEAGYLPVVID 33
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 28.4 bits (64), Expect = 0.37
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQ 50
M + + + ++ A G EL G KV D + E L ++
Sbjct: 1 MTENGRYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE 48
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase,
cell WALL, peptidoglycan synthesis, vancomycin, ADP
binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP:
c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 28.6 bits (65), Expect = 0.38
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 6 KGKVALVTGGAAG-------IGRAYCEELLKFGAKVSICDINDSVGEDLAEQ 50
K+A++ GG + G A L + G D + L
Sbjct: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM 53
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 28.5 bits (64), Expect = 0.40
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 22/87 (25%)
Query: 8 KVALVTGGAAGIGRAYCEELLKF--GAK-VSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
++ ++ G IG+ + + GA+ V++ D+N ++ A++ +Y
Sbjct: 4 RIGVI--GTGAIGKEHINRITNKLSGAEIVAVTDVN----QEAAQKVVEQYQ-------- 49
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVI 91
+ T YP + +D V+
Sbjct: 50 LNATVYPNDDSLLADE-----NVDAVL 71
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 28.4 bits (64), Expect = 0.43
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 22/86 (25%)
Query: 8 KVALVTGGAAGIGRAYCEELLKF-GAK-VSICDINDSVGEDLAEQWRTKYGPNRAIYCPC 65
++ ++ G IG + E L A +I D+ ED + + K G +A
Sbjct: 4 RIGVI--GLGRIGTIHAENLKMIDDAILYAISDVR----EDRLREMKEKLGVEKA----- 52
Query: 66 DVTDYPQFEEAFQITLQKLGGLDIVI 91
Y E + +D V+
Sbjct: 53 ----YKDPHELI-----EDPNVDAVL 69
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.4 bits (63), Expect = 0.43
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 21/88 (23%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCP 64
+ G V G +G + + GAKV + R R
Sbjct: 153 IHGANVAVLG-LGRVGMSVARKFAALGAKVKVGA-------------RESDLLARIAEMG 198
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVIN 92
+ + + L +D+ IN
Sbjct: 199 MEPFHISKAAQE-------LRDVDVCIN 219
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 28.6 bits (64), Expect = 0.44
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 8 KVALVTGGAAGIGR-AYCEELLKF-GAKVSICDINDSVGEDLAEQWRTK 54
K+A++ G I + AY L ++ ++ +C N V LA ++R
Sbjct: 4 KIAMI--GLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVS 50
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 28.4 bits (64), Expect = 0.44
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 7 GKVALVTGGAAG-IGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPC 65
G LV G AG IG +GA V + ++A+ G + +
Sbjct: 169 GTTVLVIG--AGPIGLVSVLAAKAYGAFVVCTARSPRR-LEVAK----NCGADVTLV--V 219
Query: 66 DVTDYPQFEEAFQITLQKLGGLDIVI 91
D + +I ++ I
Sbjct: 220 DPAKEEESSIIERIRSAIGDLPNVTI 245
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A
{Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB:
1p74_A*
Length = 272
Score = 28.2 bits (64), Expect = 0.46
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 26/93 (27%)
Query: 4 DLKGKVALV--TGGAAGIGRAYCEELLKFGAKVSICDINDSVG--EDLAEQWRTKYGPNR 59
+ L+ GGA + LL+ + + N + ++LAE+++ YG +
Sbjct: 116 LRPNQHVLILGAGGAT---KGVLLPLLQAQQNIVLA--NRTFSKTKELAERFQ-PYGNIQ 169
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKLGGLDIVIN 92
A+ + L D+VIN
Sbjct: 170 AV----------SMDSI------PLQTYDLVIN 186
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 28.3 bits (64), Expect = 0.46
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLK-FGAKV 34
+ V LV + IG + +L + ++
Sbjct: 144 RNDVLLVNACGSAIGHLFA-QLSQILNFRL 172
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 28.0 bits (63), Expect = 0.48
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 3 MDLKGKVALVTGGAAG-IGRAYCEELLKFGAKVSIC--DINDSVGEDLAEQWRTKYGPNR 59
+DLKG+ LV GG G I + L+ GA +++ ++ + + + + + R
Sbjct: 27 LDLKGRSVLVVGG--GTIATRRIKGFLQEGAAITVVAPTVSAEI-NEWEAKGQLRV--KR 81
Query: 60 AIYCPCDVTDY 70
D+ +
Sbjct: 82 KKVGEEDLLNV 92
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 28.4 bits (63), Expect = 0.51
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLKFGAKV 34
+ T A+ +G+ + LK G K+
Sbjct: 171 GHSALVHTAAASNLGQMLNQICLKDGIKL 199
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics,
putative oxidoreductase YVAA, oxidoredu PSI-2, protein
structure initiative; 2.03A {Bacillus subtilis subsp}
PDB: 3gfg_A
Length = 358
Score = 28.1 bits (63), Expect = 0.53
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQW 51
M +D KV ++ G G + LL + I I S E++ +
Sbjct: 1 MSLD-TIKVGIL--GYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDF 48
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 28.0 bits (63), Expect = 0.55
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 22/109 (20%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M +G V+G + + + E+ ++FGA+V +DS G +
Sbjct: 228 MGFEGMRVSVSG-SGNVAQYAIEKAMEFGARVITA--SDSSG---------------TVV 269
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAG---IFNDRFWELEVDV 108
+ +I + G + G + + W L VD+
Sbjct: 270 DE-SGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDI 317
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 28.1 bits (62), Expect = 0.60
Identities = 18/102 (17%), Positives = 26/102 (25%), Gaps = 15/102 (14%)
Query: 7 GKVALVTGGAAGIGRAYCEELLKFGAKVSICDIN---DSVGEDLA----------EQWRT 53
K LV G + G G A FG + ++
Sbjct: 47 PKRVLVIGASTGYGLAARITAA-FGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAA 105
Query: 54 KYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAG 95
+ G A D + Q LG +D VI +
Sbjct: 106 QKG-LYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLA 146
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 28.1 bits (62), Expect = 0.60
Identities = 10/86 (11%), Positives = 20/86 (23%), Gaps = 13/86 (15%)
Query: 11 LVTGGAAGIGRAYCEELLKF-GAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTD 69
+ G A I + LL + +++ R +
Sbjct: 9 TILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII-----DHERVTVIEGSFQN 63
Query: 70 YPQFEEAFQITLQKLGGLDIVINNAG 95
E+A ++V A
Sbjct: 64 PGXLEQAVT-------NAEVVFVGAM 82
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 27.7 bits (62), Expect = 0.62
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 19/111 (17%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIY 62
M+ K+ ++ G + +G A E L G +V+ +V + K
Sbjct: 1 MEKVKKI-VLIGASGFVGSALLNEALNRGFEVT------AVVRHPE---KIKIENEHLKV 50
Query: 63 CPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELEVDVNLVGT 113
DV+ + E + G D VI+ + D +
Sbjct: 51 KKADVSSLDEVCEVCK-------GADAVISAFNPGWNN--PDIYDETIKVY 92
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 27.9 bits (63), Expect = 0.63
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICD 38
L+TGGA +G E L G ++ + D
Sbjct: 24 LITGGAGCLGSNLIEHWLPQGHEILVID 51
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding,
cell cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A
{Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A*
2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A*
2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A*
2uag_A*
Length = 439
Score = 27.9 bits (63), Expect = 0.64
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 4 DLKGKVALVTGGAAGI-GRAYCEELLKFGAKVSICDINDS 42
D +GK ++ G G+ G + + L G + D +
Sbjct: 2 DYQGKNVVIIG--LGLTGLSCVDFFLARGVTPRVMDTRMT 39
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 27.9 bits (63), Expect = 0.67
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 1 MVMDLKGKVALVTGGAAGI-------GRAYCEELLKFGAKVSICDINDSVGEDLAEQ 50
+ GKVA++ GG + GR + L G D + L ++
Sbjct: 8 IDPKRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDE 64
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 27.7 bits (61), Expect = 0.74
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPC 65
KG+V L+ G IG+ L I A+ ++ AI
Sbjct: 10 KGRV-LIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKA-LEDKGAIIVYG 67
Query: 66 DVTDYPQFEEAFQITLQKLGGLDIVINNAG 95
+ + E+ K +DIV++ G
Sbjct: 68 LINEQEAMEKIL-----KEHEIDIVVSTVG 92
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 27.6 bits (62), Expect = 0.75
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKV--SICDINDSVGEDLAEQWRTKYGPNRA 60
M + + VTG + IG LL+ G V ++ D + + +
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTN--VKKVKHLLDLPKAETHL 58
Query: 61 IYCPCDVTDYPQFEEAFQ 78
D+ D F+EA +
Sbjct: 59 TLWKADLADEGSFDEAIK 76
>2cmg_A Spermidine synthase; transferase, putrescine
aminopropyltransferase, spermidine biosynthesis,
polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori}
PDB: 2cmh_A
Length = 262
Score = 27.8 bits (62), Expect = 0.76
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 14/84 (16%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDV 67
+V +V G + +L K+ + ++ + + + + +V
Sbjct: 75 EVLIVDGFDLELAH----QLFKYDTHIDFVQADEKILD-SFISFFPHF---------HEV 120
Query: 68 TDYPQFEEAFQITLQKLGGLDIVI 91
+ F A Q+ + D++
Sbjct: 121 KNNKNFTHAKQLLDLDIKKYDLIF 144
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 27.6 bits (62), Expect = 0.78
Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 25/111 (22%)
Query: 3 MDLKGKVALVTG-GAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAI 61
+ ++ + A+V+G G + ++LL KV +DS G +
Sbjct: 248 IPVEKQTAVVSGSGNVALYCV--QKLLHLNVKVLTL--SDSNG---------------YV 288
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAG----IFNDRFWELEVDV 108
Y P + + E + +K G + +N++ N++ W + +
Sbjct: 289 YEP-NGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTL 338
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 27.7 bits (62), Expect = 0.79
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 8 KVALVTGGAAGIG-RAYCEELLKFGAK-VSICDINDSVGEDLAEQWRTKYG 56
+ A + G A C++L+ GA+ + + + D ++ + +
Sbjct: 6 RFAAI--GLAHNHIYDMCQQLIDAGAELAGVFESD----SDNRAKFTSLFP 50
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 27.7 bits (62), Expect = 0.81
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSIC 37
L+ G IG E LL+
Sbjct: 4 LILGVNGFIGNHLTERLLREDHYEVYG 30
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 27.4 bits (62), Expect = 0.83
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICD 38
L+ GGA IG ++L+ G V + D
Sbjct: 5 LICGGAGYIGSHAVKKLVDEGLSVVVVD 32
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 27.6 bits (61), Expect = 0.85
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLA-EQWRTKYGPNRAIYCP 64
K+ + GG IG+ L F I + + Q R ++
Sbjct: 4 MEKIIIY-GGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIE 62
Query: 65 CDVTDYPQFEEAFQITLQKLGGLDIVINNAG 95
++ ++ + + +DIVI+
Sbjct: 63 GEMEEHEKMVSVLK-------QVDIVISALP 86
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 27.3 bits (61), Expect = 0.93
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 8 KVALVTGGAAGIGR-AYCEELLKF-GAK-VSICDINDSVGEDLAEQWRTKY 55
K+ ++ G I + AY L K + V N E + +R
Sbjct: 8 KMGMI--GLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMP 56
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 27.5 bits (61), Expect = 0.94
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 18/87 (20%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDI--NDSVGEDLAEQWRTKYGPNRAIYCPCDVT 68
LVTG + G+ ++L + K + + E + A D+T
Sbjct: 8 LVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIGDIT 58
Query: 69 DYPQFEEAFQITLQKLGGLDIVINNAG 95
D AFQ G+D ++
Sbjct: 59 DADSINPAFQ-------GIDALVILTS 78
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 27.4 bits (62), Expect = 1.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICD 38
LVTGG+ IG C +LL+ G V I D
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILD 31
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding,
activator, alternative splicing, ATP-binding, DNA
replication, DNA- binding; NMR {Homo sapiens} PDB:
2k7f_A
Length = 109
Score = 26.6 bits (59), Expect = 1.0
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLK-FGAKVS 35
L+G + ++TG I R + L++ +G KV+
Sbjct: 33 LEGLIFVITGVLESIERDEAKSLIERYGGKVT 64
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 27.3 bits (61), Expect = 1.1
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSI 36
M K L+ G G + +L +
Sbjct: 1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKV 34
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 27.6 bits (61), Expect = 1.1
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 66 DVTDY----PQF--EEAFQI---TLQKLG-GL--DIVINNAGIFNDRFWELEV 106
DV D+ + E+ ++ T +G G+ DIV N+ + + + ++V
Sbjct: 51 DVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLNWRLMDV 103
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 27.2 bits (61), Expect = 1.1
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 25/111 (22%)
Query: 3 MDLKGKVALVTG-GAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAI 61
+L+ K LV+G G E+L++ GA V +DS G I
Sbjct: 235 DNLENKKCLVSGSGNVAQYLV--EKLIEKGAIVLTM--SDSNG---------------YI 275
Query: 62 YCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAG----IFNDRFWELEVDV 108
P + Q I + L + + N + W + D+
Sbjct: 276 LEP-NGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFENQKPWNIPCDI 325
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 27.2 bits (60), Expect = 1.1
Identities = 10/121 (8%), Positives = 27/121 (22%), Gaps = 40/121 (33%)
Query: 7 GKVALVTGGA------AGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
+ + G GI + + K+ + K+ +
Sbjct: 2 EDICFIAGIGDTNGYGWGIAKELSKR----NVKIIFGIWPPVYNIFMKNYKNGKFDNDMI 57
Query: 61 I------------------------------YCPCDVTDYPQFEEAFQITLQKLGGLDIV 90
I ++ E+ + QK G ++++
Sbjct: 58 IDKDKKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINML 117
Query: 91 I 91
+
Sbjct: 118 V 118
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel
beta-sheet, DNA replication, clamp loader, RFC1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 112
Score = 26.6 bits (59), Expect = 1.1
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLK-FGAKVS 35
L+G + ++TG I R + L++ +G KV+
Sbjct: 23 LEGLIFVITGVLESIERDEAKSLIERYGGKVT 54
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 27.1 bits (61), Expect = 1.2
Identities = 6/52 (11%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 6 KGKVALVTGGAAG---I----GRAYCEELLKFGAKVSICDINDSVGEDLAEQ 50
++ ++ GG + + G L K ++ +N+ + +
Sbjct: 3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAK 54
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 4 DLKGKVALV--TGGAAGIGRAYCEELLKFGAKVSIC 37
G L+ GGA+ R LL V+I
Sbjct: 116 IRPGLRILLIGAGGAS---RGVLLPLLSLDCAVTIT 148
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 27.2 bits (61), Expect = 1.3
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 11 LVTGGAAGIGRAYCEELLKFG-AKVSICD 38
+VTGGA IG + L G + + D
Sbjct: 3 IVTGGAGFIGSNIVKALNDKGITDILVVD 31
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 27.3 bits (61), Expect = 1.3
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDL 47
+ +V ++ + + E+L G +V+I
Sbjct: 527 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH 569
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 27.1 bits (61), Expect = 1.4
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLK-FGAKV 34
G+ LV G + G+G A C ++ + +G K+
Sbjct: 170 AGESVLVHGASGGVGLAAC-QIARAYGLKI 198
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 26.5 bits (59), Expect = 1.7
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 16/103 (15%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTDY 70
LV G + R EL G + N+ G +L E+ G + + ++ +
Sbjct: 25 LVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER-----GASDIVV--ANLEE- 76
Query: 71 PQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELEVDVNLVGT 113
F AF +D V+ AG + + ++L G
Sbjct: 77 -DFSHAFA-------SIDAVVFAAGSGPHTGADKTILIDLWGA 111
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 26.7 bits (60), Expect = 1.8
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 4 DLKGKVALV--TGGAAGIGRAYCEELLKFGAKVSIC 37
+ AL+ GG+A +A EL K G +VS+
Sbjct: 115 QKNYQNALILGAGGSA---KALACELKKQGLQVSVL 147
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 26.7 bits (60), Expect = 1.9
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 21 RAYCEELLKFGAKVSICD--INDSVGEDLAEQWRTKYG 56
C+++ K V + I DLA + +K
Sbjct: 272 LNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLN 309
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 26.1 bits (58), Expect = 2.0
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 19 IGRAYCEELLKFGAKVSICDINDSVGEDLAEQ 50
G + +EL + G +V DIN+ A
Sbjct: 17 FGGSIVKELHRMGHEVLAVDINEEKVNAYASY 48
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 26.7 bits (60), Expect = 2.0
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 21 RAYCEELLKFGAKVSICD--INDSVGEDLAEQWRTKYG 56
+++ K G V + I DLA + K
Sbjct: 263 LNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMK 300
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 26.5 bits (58), Expect = 2.2
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKV 34
+ G G EE G +V
Sbjct: 4 GIIGATGRAGSRILEEAKNRGHEV 27
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 26.3 bits (57), Expect = 2.4
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 14/102 (13%)
Query: 7 GKVALVTGGAAGIGRAYCEELLKFGAKVSICDIN----------DSVGEDLAEQWRT--K 54
K LV G ++G G A FG + + G + + K
Sbjct: 61 PKKVLVIGASSGYGLASRITAA-FGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAK 119
Query: 55 YGPNRAIYCPCDVTDYPQFEEAFQITLQKLGG-LDIVINNAG 95
+ D + ++ ++GG +D+V+ +
Sbjct: 120 AAGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLA 161
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 26.2 bits (58), Expect = 2.4
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 1 MVMDLKGKVALVTGGAAGI-GRAYCEELLKF-GAK-VSICDINDSVGEDLAEQW 51
M + KV LV G LL+ + V+ CD + +
Sbjct: 1 MSLS-LIKVGLV--GIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFI 51
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 26.4 bits (59), Expect = 2.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLK-FGAKV 34
G+ LV G A GIG A ++ K GAKV
Sbjct: 159 AGETVLVLGAAGGIGTAAI-QIAKGMGAKV 187
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 26.3 bits (59), Expect = 2.6
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 17/81 (20%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTDY 70
+VTGGA IG ++L + ++ + D N S G ++ A D+
Sbjct: 5 VVTGGAGFIGSHVVDKLSE-SNEIVVID-NLSSG-------NEEFVNEAARLVKADLAA- 54
Query: 71 PQFEEAFQITLQKLGGLDIVI 91
++ + G + V
Sbjct: 55 DDIKDYLK-------GAEEVW 68
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 25.9 bits (56), Expect = 3.1
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRA 60
+ + + +V G+ G+ AY L+ +++I + + G W +
Sbjct: 74 LDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG---GGAWLGGQLFSAM 130
Query: 61 IYCP 64
+
Sbjct: 131 VMRK 134
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A
{Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A*
1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Length = 366
Score = 25.8 bits (57), Expect = 3.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 4 DLKGKVALVTGGAAG 18
+ GKVAL++GG +G
Sbjct: 51 PVAGKVALLSGGGSG 65
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote
structure initiative, NEW YORK SGX research center for
STRU genomics; 1.88A {Caenorhabditis elegans}
Length = 481
Score = 26.0 bits (58), Expect = 3.4
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 24 CEELLKFGAKVSICD---INDSVGEDLAEQWRTKYGPNRAIYC 63
+ L++ AK+S+ D + DLA +
Sbjct: 361 IKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVE 403
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 25.6 bits (56), Expect = 3.5
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 44 GEDLAEQWRTKYGPNRAIYCPCDVTDYP 71
+ AE+ + + ++ +Y YP
Sbjct: 107 SPEDAEKLLSSFDGSKVVYAFYFSRKYP 134
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 25.7 bits (57), Expect = 3.7
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDL 47
+ KV + +G E L + G +VSI V
Sbjct: 520 LPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT 564
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 26.0 bits (56), Expect = 3.8
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 1 MVMDLKGKVALVTGGAAGIGRAYCEELLKFGAK-VSICDINDSVG-----EDLAEQWRTK 54
M L K+ ++ G G+G A L + G K + + ND+ G +
Sbjct: 4 MAELLTPKIVIIGAGPTGLGAAV--RLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWD 61
Query: 55 YGPNR 59
G +
Sbjct: 62 LGGHV 66
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 25.6 bits (57), Expect = 3.8
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICD 38
L+TGG +G L G + + D
Sbjct: 5 LITGGCGFLGSNLASFALSQGIDLIVFD 32
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 25.5 bits (56), Expect = 3.9
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 60 AIYCPCDVTDYPQFEEAFQITLQKL 84
+Y + A L +
Sbjct: 96 VVYIGQGELTEKGYTYARDYALHRT 120
>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme,
acyltransferase, acetylation; HET: COA PG4; 1.53A
{Escherichia coli} SCOP: c.7.1.1 PDB: 1h17_A* 1h18_A*
1mzo_A* 2pfl_A 3pfl_A 1cm5_A 1qhm_A
Length = 759
Score = 25.7 bits (56), Expect = 4.1
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 32 AKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVI 91
AK + IN V E L Q K P + DV +Y + E + L I
Sbjct: 439 AKTMLYAINGGVDEKLKMQVGPKSEPIKG-----DVLNYDEVMERMDHFMDWLAKQYITA 493
Query: 92 NNA 94
N
Sbjct: 494 LNI 496
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein
structure initi midwest center for structural genomics,
PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP:
d.159.1.8
Length = 195
Score = 25.4 bits (55), Expect = 4.5
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 45 EDLAEQWRTKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGG 86
+ P +Y D T + + + + L G
Sbjct: 31 IVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWKALPG 72
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 25.4 bits (55), Expect = 4.5
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKV 34
V G G A E + G +V
Sbjct: 4 AVLGATGRAGSAIVAEARRRGHEV 27
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 25.4 bits (56), Expect = 4.8
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 12/53 (22%)
Query: 66 DVTDY----PQF--EEAFQITLQKLGG------LDIVINNAGIFNDRFWELEV 106
DV DY + EE + + + DIV N+ + + + ++V
Sbjct: 49 DVVDYNTINDELGGEEEYIRLIDEAKSKGLGIIQDIVPNHMAVHHTNWRLMDV 101
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 25.6 bits (57), Expect = 4.8
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 39/114 (34%)
Query: 3 MDLKGKVALVTG-GAAGIGRAYCEELLKFGAK-VSICDINDSV----GEDLAE--QWRTK 54
+ ++G + G G G A GA+ V++ D +V G D + + +
Sbjct: 231 LQVEGARVAIQGFGNVGNAAA--RAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQE 288
Query: 55 YGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELEVDV 108
+G V YP +A + FW L V+
Sbjct: 289 FG---------GVRGYP---KAEPLP-----------------AADFWGLPVEF 313
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 25.3 bits (56), Expect = 4.8
Identities = 12/104 (11%), Positives = 31/104 (29%), Gaps = 20/104 (19%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVT-D 69
+ G +G++ + L ++ + + DV
Sbjct: 4 FIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHF---------DVDWT 53
Query: 70 YPQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELEVD--VNLV 111
+ + G+D +IN +G ++++ V L+
Sbjct: 54 PEEMAKQLH-------GMDAIINVSGSGGKSLLKVDLYGAVKLM 90
>3ct4_A PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding
subunit DHAK; dihydroxyacetone kinase subunit,
tranferase; 2.50A {Lactococcus lactis subsp}
Length = 332
Score = 25.2 bits (56), Expect = 4.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 6 KGKVALVTGGAAG 18
GKVALV+GG +G
Sbjct: 45 SGKVALVSGGGSG 57
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5,
RNA processing, cleavage factor, diadenosine
tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo
sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A
3q2t_A 2j8q_A 3p5t_A 3p6y_A
Length = 208
Score = 25.3 bits (55), Expect = 5.0
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 43 VGEDLAEQWRTKYGPNRAIYCPCDVTDYPQFEEAFQITLQK 83
+ + + WR + P + Y P +T + ++ F + LQ+
Sbjct: 122 IDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQE 162
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 25.3 bits (56), Expect = 5.2
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 11 LVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTDY 70
+ G G + ++ G +V++ + S GP A DV
Sbjct: 7 AIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQA 58
Query: 71 PQFEEAFQITLQKLGGLDIVINNAGIFND 99
++ G D VI G ND
Sbjct: 59 ADVDKTVA-------GQDAVIVLLGTRND 80
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 25.4 bits (55), Expect = 5.2
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 16 AAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYCPCDVTDYPQFEE 75
AGIGR LL +V + DI + A+ + + G Y C + D+ +
Sbjct: 87 GAGIGRITKRLLLPLFREVDMVDITEDF-LVQAKTYLGEEGKRVRNYFCCGLQDFTPEPD 145
Query: 76 AFQI 79
++ +
Sbjct: 146 SYDV 149
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 25.3 bits (56), Expect = 5.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLK-FGAKV 34
+GK LVT A G G+ +L K V
Sbjct: 163 EGKKVLVTAAAGGTGQFAM-QLSKKAKCHV 191
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport,
flavoprotein, FMN, transport; HET: FMN; 2.00A
{Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A*
3kap_A* 3kaq_A*
Length = 148
Score = 24.9 bits (55), Expect = 5.9
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 13 TGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQ 50
TG I + E + G +V++ + D+ E+LA+
Sbjct: 12 TGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADG 49
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 25.3 bits (56), Expect = 6.2
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 3 MDLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRT 53
L+ + L+ GG + LL+ GA++++ Q+
Sbjct: 8 CQLRDRDCLIVGGGD-VAERKARLLLEAGARLTV------NALTFIPQFTV 51
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase;
HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Length = 336
Score = 24.9 bits (55), Expect = 6.3
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 6 KGKVALVTGGAAG 18
+ V +++GG +G
Sbjct: 41 EKTVPIISGGGSG 53
>1un8_A Dihydroxyacetone kinase; transferase; HET: MYY; 2.5A {Citrobacter
freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A*
Length = 552
Score = 24.9 bits (55), Expect = 6.5
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 6 KGKVALVTGGAAG 18
K VA+++GG +G
Sbjct: 48 KNNVAVISGGGSG 60
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 25.0 bits (55), Expect = 6.6
Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 40/116 (34%)
Query: 1 MVMDLKGKVALVTG-GAAGIGRAYCEELLKFGAK-VSICDINDSV----GEDLAE--QWR 52
M K +V G G G+ L +FGAK +++ + + S+ G D E ++
Sbjct: 238 MTPGFGDKTFVVQGFGNVGLHSM--RYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFK 295
Query: 53 TKYGPNRAIYCPCDVTDYPQFEEAFQITLQKLGGLDIVINNAGIFNDRFWELEVDV 108
++G + +P A I+ E++ D+
Sbjct: 296 LQHG---------TILGFP---------------------KAKIYEGSILEVDCDI 321
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 25.2 bits (56), Expect = 6.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 11 LVTGGAAGIGRAYCEELLK 29
LVTGGA IG + +LL
Sbjct: 4 LVTGGAGFIGSHFVRQLLA 22
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 24.9 bits (55), Expect = 6.7
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 11 LVTGGAAGIGRAYCEELLKFGA 32
++TG +G + +
Sbjct: 4 MLTGATGHLGTHITNQAIANHI 25
>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein
YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics,
PSI-2; 2.00A {Bacillus subtilis}
Length = 258
Score = 25.0 bits (55), Expect = 6.7
Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 33/89 (37%)
Query: 4 DLKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQWRTKYGPNRAIYC 63
DLKGK + + S G + ++W G I
Sbjct: 122 DLKGKRVITSAT--------------------------SNGALVLKKWNEDNGRPFEI-- 153
Query: 64 PCDVTDYPQFEEAFQITLQKLGGLDIVIN 92
+ E K G D I+
Sbjct: 154 ---AYEGQGANETAN--QLKSGRADATIS 177
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 24.9 bits (55), Expect = 6.9
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 11 LVTGGAAGIGRAYCEELLKF-GAKVSICD 38
LV GGA IG + LL+ V I D
Sbjct: 6 LVCGGAGYIGSHFVRALLRDTNHSVVIVD 34
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 24.9 bits (55), Expect = 7.7
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLKFGAKV 34
KG L+ A G+G + L GA
Sbjct: 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHT 176
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 24.9 bits (55), Expect = 8.2
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLK-FGAKV 34
G + +G+G+A ++ G +
Sbjct: 167 PGDSVIQNASNSGVGQAVI-QIAAALGLRT 195
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 24.5 bits (54), Expect = 8.2
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 8 KVALVTGGAAGIGRAYCEELLKFGAKVSICDINDSVGEDLAEQ 50
KV ++ G +L V I + + + E+ A++
Sbjct: 2 KVIIIGGET--TAYYLARSMLSRKYGVVIINKDRELCEEFAKK 42
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 24.6 bits (54), Expect = 8.6
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDIN 40
+ GKVA+V G +G+ + L GA+V + +++
Sbjct: 245 MAGKVAVV-CGYGDVGKGSAQSLAGAGARVKVTEVD 279
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 24.8 bits (54), Expect = 8.6
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 LKGKVALVTGGAAGIGRAYCEELLKFGAKVSICDIN 40
+ GK L+ G +G+ E + GA+VS+ +I+
Sbjct: 272 IGGKKVLI-CGYGDVGKGCAEAMKGQGARVSVTEID 306
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 24.8 bits (55), Expect = 8.7
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLK-FGAKV 34
G+ LV A +G A ++ + G +V
Sbjct: 125 PGEKVLVQAAAGALGTAAV-QVARAMGLRV 153
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 24.5 bits (54), Expect = 8.9
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 1 MVMDLKGKVALVTG-GAAGIGRAYCEELLKFGAKV 34
L G+ L+ G G IG++ + G V
Sbjct: 131 TTSTLTGQQLLIYGTGQ--IGQSLAAKASALGMHV 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 9.2
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 34 VSICDINDSVGEDLAEQWRTKYGPNRAIYC-----PCD---VTDYPQFEEAFQITLQKL- 84
+SI ++ +D + + + + V+ PQ +TL+K
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA-KNLVVSGPPQSLYGLNLTLRKAK 397
Query: 85 --GGLD 88
GLD
Sbjct: 398 APSGLD 403
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 24.5 bits (54), Expect = 9.7
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 6 KGKVALVTGGAAGIGRAYCEELLKFGAKV 34
G L+ A G+G GA V
Sbjct: 145 PGDYVLIHAAAGGMGHIMVPWARHLGATV 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.438
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,869,502
Number of extensions: 105861
Number of successful extensions: 996
Number of sequences better than 10.0: 1
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 405
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)