BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12455
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101
E CA+C+E +KP D + I PCKH +H+ C+ WL + CP+C M +L+
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMD 98
C +C+ ++ ++R+LPC HE+H C+D WL +RTCP+C+ D
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 46 KEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
+E G G C +C E Y + VR LPC H +H +CI PWL +H +CP+C+ +
Sbjct: 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
C IC+ + + VR LPC H +H+ C+D WL+ ++ CP+C++DI
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 28 AAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL 87
A+K+++ +P + ED G CC IC Y D+ LPC H +HK C+ WL
Sbjct: 17 ASKESIDALPEILVT-EDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75
Query: 88 EHRTCPMCK 96
+ TCP+C+
Sbjct: 76 KSGTCPVCR 84
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 51 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDIL 100
DG CA+C+ + + R LP C H +H C+D WL H TCP+C++ ++
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 42 KGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
G K+++ + ECC IC++ +D+ ILPC H + + CID W HR CP+C++ +
Sbjct: 6 SGRVKQLTDEEECC-ICMDGR--ADL--ILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
E C IC+E PS+ LPC H + CI W+ ++ TCP+CK+ +
Sbjct: 5 AERCPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 55 CAICIEFYKPSDIV-RILPCKHEYHKNCIDPWLLEHRTCPMCK 96
C IC+E S +V +LPC H H+ C + L E CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI-LKHYGFVI 107
C IC E++ + L C H + CI+ W+ CP+C+ DI K Y V+
Sbjct: 56 CIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVL 106
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI-LKHYGFVI 107
C IC E++ + L C H + CI+ W+ CP+C+ DI K Y V+
Sbjct: 56 CIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVL 106
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI-LKHYGFVI 107
C IC E++ + L C H + CI+ W+ CP+C+ DI K Y V+
Sbjct: 67 CIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVL 117
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 55 CAICIEFYKPSDIV-RILPCKHEYHKNCIDPWLLEHRTCPMC 95
C IC+E S +V +LPC H H+ C + L E CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 63 KPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100
K D V + C H +H C+ W+ ++ CP+C+ D +
Sbjct: 37 KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 55 CAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMC 95
C IC E++ +I I+P C H Y CI +L CP C
Sbjct: 25 CGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101
C +C ++ D I+ C H + K CI +L + CP+C + + K
Sbjct: 18 CVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101
C +C ++ D I+ C H + K CI +L + CP+C + + K
Sbjct: 18 CVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 37 PTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEH 89
P HIK + E+ + C IC E K V+I PC H +C+ W E
Sbjct: 313 PQDHIKVTQEQFELXCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEG 369
Query: 90 RTCPMCKMDI 99
+ CP C+ +I
Sbjct: 370 QGCPFCRCEI 379
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 37 PTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEH 89
P HIK + E+ + C IC E K V+I PC H +C+ W E
Sbjct: 313 PQDHIKVTQEQYELXCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEG 369
Query: 90 RTCPMCKMDI 99
+ CP C+ +I
Sbjct: 370 QGCPFCRCEI 379
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101
C +C ++ D I+ C H + K CI +L + CP+C + + K
Sbjct: 14 CVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 58
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 37 PTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEH 89
P HIK + E+ + C IC E K V+I PC H +C+ W E
Sbjct: 311 PQDHIKVTQEQYELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEG 367
Query: 90 RTCPMCKMDI 99
+ CP C+ +I
Sbjct: 368 QGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 37 PTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEH 89
P HIK + E+ + C IC E K V+I PC H +C+ W E
Sbjct: 311 PQDHIKVTQEQYELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEG 367
Query: 90 RTCPMCKMDI 99
+ CP C+ +I
Sbjct: 368 QGCPFCRCEI 377
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 47 EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDILKHYGF 105
E+ + C IC E K V+I PC H +C+ W E + CP C+ +I
Sbjct: 19 EMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 75
Query: 106 VILAHSP 112
V+ P
Sbjct: 76 VVDPFDP 82
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 73 CKHEYHKNCIDPWLLEHRTCPM 94
C H +H +CI WL + CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|2W8D|A Chain A, Distinct And Essential Morphogenic Functions For Wall- And
Lipo-Teichoic Acids In Bacillus Subtilis
pdb|2W8D|B Chain B, Distinct And Essential Morphogenic Functions For Wall- And
Lipo-Teichoic Acids In Bacillus Subtilis
Length = 436
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 7 DSKTGKEKVQLTDVKQRRLCSAAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSD 66
D+KTGKE + S K+ + K ++ DK I+GD + FY+P
Sbjct: 365 DTKTGKELDE----------SEVDKSEDSLVKKELEXSDKIINGD------LLRFYEPKG 408
Query: 67 IVRILPCKHEYHKNCID 83
++ P ++Y K+ D
Sbjct: 409 FKKVNPSDYDYTKHDED 425
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 37 PTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEH 89
P HIK + E+ + C IC E K V+I PC H +C+ W E
Sbjct: 6 PQDHIKVTQEQFELXCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEG 62
Query: 90 RTCPMCKMDI 99
+ CP C+ +I
Sbjct: 63 QGCPFCRCEI 72
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 73 CKHEYHKNCIDPWLLEHRTCPM 94
C H +H +CI WL + CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 73 CKHEYHKNCIDPWLLEHRTCPM 94
C H +H +CI WL + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 73 CKHEYHKNCIDPWLLEHRTCPM 94
C H +H +CI WL + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 73 CKHEYHKNCIDPWLLEHRTCPM 94
C H +H +CI WL + CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 73 CKHEYHKNCIDPWLLEHRTCPM 94
C H +H +CI WL + CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 73 CKHEYHKNCIDPWLLEHRTCPM 94
C H +H +CI WL + CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPW---LLEHRTCPMC 95
C++C+E+ K I+ C H + K CI W L CP+C
Sbjct: 18 CSVCLEYLKEPVIIE---CGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 47 EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDI 99
E+ + C IC E K V+I PC H +C+ W + + CP C+ +I
Sbjct: 333 EMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 47 EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDI 99
E+ + C IC E K V+I PC H +C+ W + + CP C+ +I
Sbjct: 21 EMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,824,674
Number of Sequences: 62578
Number of extensions: 193534
Number of successful extensions: 267
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 49
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)