Query psy12455
Match_columns 152
No_of_seqs 158 out of 1713
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 19:45:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628|consensus 99.7 3.4E-17 7.4E-22 131.1 9.0 83 23-107 202-285 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 3.7E-16 8E-21 90.5 2.0 43 54-96 2-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.5 2E-14 4.3E-19 115.0 3.2 77 21-101 260-346 (491)
4 PHA02929 N1R/p28-like protein; 99.4 2.4E-13 5.1E-18 104.6 5.1 76 26-101 148-228 (238)
5 PLN03208 E3 ubiquitin-protein 99.4 1.2E-12 2.6E-17 97.3 7.2 56 51-109 17-88 (193)
6 PF12678 zf-rbx1: RING-H2 zinc 99.3 1E-12 2.2E-17 84.0 4.2 45 52-96 19-73 (73)
7 KOG0823|consensus 99.3 5.5E-12 1.2E-16 95.5 6.5 58 49-109 44-104 (230)
8 KOG0317|consensus 99.2 5.4E-12 1.2E-16 98.2 3.5 55 45-102 232-286 (293)
9 PF13920 zf-C3HC4_3: Zinc fing 99.2 8E-12 1.7E-16 74.1 3.0 46 52-100 2-48 (50)
10 PF15227 zf-C3HC4_4: zinc fing 99.2 9.8E-12 2.1E-16 71.1 2.7 38 55-95 1-42 (42)
11 COG5540 RING-finger-containing 99.2 1.1E-11 2.4E-16 97.1 3.4 50 51-100 322-372 (374)
12 PF13923 zf-C3HC4_2: Zinc fing 99.1 3.4E-11 7.3E-16 67.8 3.0 39 55-95 1-39 (39)
13 cd00162 RING RING-finger (Real 99.1 1E-10 2.2E-15 66.6 3.2 44 54-99 1-45 (45)
14 smart00504 Ubox Modified RING 99.0 3.2E-10 7E-15 69.9 3.9 45 53-100 2-46 (63)
15 KOG0320|consensus 99.0 2.3E-10 4.9E-15 83.6 3.6 64 39-103 118-181 (187)
16 PF00097 zf-C3HC4: Zinc finger 99.0 2.4E-10 5.3E-15 64.7 2.5 39 55-95 1-41 (41)
17 PHA02926 zinc finger-like prot 99.0 1.6E-10 3.4E-15 87.3 1.2 50 51-100 169-230 (242)
18 PF14634 zf-RING_5: zinc-RING 99.0 6.3E-10 1.4E-14 64.2 3.2 44 54-97 1-44 (44)
19 PF12861 zf-Apc11: Anaphase-pr 99.0 6.6E-10 1.4E-14 72.3 3.6 51 51-101 20-83 (85)
20 KOG0802|consensus 98.9 7.7E-10 1.7E-14 94.7 3.5 53 50-102 289-343 (543)
21 smart00184 RING Ring finger. E 98.9 1.5E-09 3.2E-14 59.7 3.4 38 55-95 1-39 (39)
22 TIGR00599 rad18 DNA repair pro 98.9 9.8E-10 2.1E-14 90.3 2.9 49 50-101 24-72 (397)
23 KOG0287|consensus 98.8 2.5E-09 5.3E-14 85.2 1.4 49 51-102 22-70 (442)
24 COG5574 PEX10 RING-finger-cont 98.7 6.1E-09 1.3E-13 80.4 2.4 50 50-102 213-264 (271)
25 PF13445 zf-RING_UBOX: RING-ty 98.7 1.4E-08 3.1E-13 58.2 2.1 34 55-89 1-35 (43)
26 KOG2164|consensus 98.6 1.5E-08 3.2E-13 84.5 2.5 49 52-103 186-239 (513)
27 PF04564 U-box: U-box domain; 98.6 2.6E-08 5.6E-13 63.5 2.9 49 51-102 3-52 (73)
28 COG5194 APC11 Component of SCF 98.6 3.7E-08 8.1E-13 62.9 3.4 31 72-102 53-83 (88)
29 COG5432 RAD18 RING-finger-cont 98.6 2.1E-08 4.5E-13 78.6 2.1 48 51-101 24-71 (391)
30 KOG2177|consensus 98.5 4.9E-08 1.1E-12 75.6 1.4 45 50-97 11-55 (386)
31 KOG0828|consensus 98.4 6.8E-08 1.5E-12 80.3 1.6 51 50-100 569-634 (636)
32 smart00744 RINGv The RING-vari 98.4 2.2E-07 4.9E-12 54.7 3.1 42 54-96 1-49 (49)
33 KOG1734|consensus 98.4 7.7E-08 1.7E-12 74.6 1.1 53 51-103 223-284 (328)
34 TIGR00570 cdk7 CDK-activating 98.4 2.6E-07 5.7E-12 73.5 3.4 53 51-103 2-57 (309)
35 PF11793 FANCL_C: FANCL C-term 98.3 1.3E-07 2.9E-12 59.8 0.1 49 52-100 2-66 (70)
36 KOG1493|consensus 98.3 1.7E-07 3.8E-12 59.3 0.5 49 52-100 20-81 (84)
37 KOG1785|consensus 98.2 5.5E-07 1.2E-11 73.5 2.6 58 53-113 370-429 (563)
38 COG5219 Uncharacterized conser 98.2 5.9E-07 1.3E-11 79.8 1.7 51 50-100 1467-1523(1525)
39 KOG2930|consensus 98.1 1.7E-06 3.7E-11 57.9 2.8 52 51-102 45-110 (114)
40 KOG4265|consensus 98.1 1.9E-06 4.2E-11 69.3 3.2 54 50-106 288-342 (349)
41 KOG0827|consensus 98.1 1.2E-06 2.6E-11 71.1 1.9 49 53-101 5-57 (465)
42 KOG0804|consensus 98.1 1.3E-06 2.8E-11 72.0 1.7 48 51-100 174-222 (493)
43 PF14835 zf-RING_6: zf-RING of 98.1 6.8E-07 1.5E-11 55.1 -0.2 47 52-102 7-53 (65)
44 KOG4159|consensus 98.1 2.8E-06 6.1E-11 70.1 3.2 50 50-102 82-131 (398)
45 KOG0311|consensus 98.0 9.4E-07 2E-11 70.9 -1.4 54 51-107 42-97 (381)
46 KOG4445|consensus 97.9 4.7E-06 1E-10 65.7 1.5 53 51-103 114-189 (368)
47 KOG0824|consensus 97.9 5.3E-06 1.2E-10 65.4 1.7 49 52-103 7-56 (324)
48 KOG4172|consensus 97.9 3.2E-06 6.9E-11 50.3 0.2 47 52-101 7-55 (62)
49 KOG1039|consensus 97.7 1.4E-05 2.9E-10 64.9 1.6 50 51-100 160-221 (344)
50 KOG0978|consensus 97.6 1.5E-05 3.2E-10 69.6 -0.2 48 52-102 643-691 (698)
51 KOG0297|consensus 97.6 3.1E-05 6.7E-10 64.1 1.7 54 50-106 19-73 (391)
52 KOG4692|consensus 97.5 9.8E-05 2.1E-09 59.7 4.2 69 30-101 399-468 (489)
53 KOG0825|consensus 97.5 1.5E-05 3.3E-10 69.8 -0.4 52 53-104 124-175 (1134)
54 PF11789 zf-Nse: Zinc-finger o 97.5 8.1E-05 1.8E-09 45.1 2.4 41 51-94 10-53 (57)
55 KOG1941|consensus 97.5 5.1E-05 1.1E-09 62.0 1.9 46 52-97 365-413 (518)
56 COG5152 Uncharacterized conser 97.4 5.2E-05 1.1E-09 56.8 0.9 49 52-103 196-244 (259)
57 KOG2660|consensus 97.3 4.9E-05 1.1E-09 60.7 -0.2 49 51-102 14-63 (331)
58 KOG1645|consensus 97.3 0.00018 3.8E-09 59.1 2.8 49 51-99 3-55 (463)
59 KOG2879|consensus 97.2 0.0012 2.6E-08 51.8 5.9 54 45-100 232-287 (298)
60 KOG1813|consensus 97.1 0.00017 3.6E-09 57.0 1.1 49 52-103 241-289 (313)
61 PF10367 Vps39_2: Vacuolar sor 97.1 0.00025 5.3E-09 47.7 1.3 32 51-83 77-108 (109)
62 PF14570 zf-RING_4: RING/Ubox 97.0 0.00045 9.8E-09 40.3 2.1 44 55-99 1-47 (48)
63 KOG1814|consensus 97.0 0.00031 6.7E-09 57.8 1.8 49 51-99 183-239 (445)
64 KOG4275|consensus 97.0 0.00015 3.3E-09 57.2 -0.3 45 52-103 300-345 (350)
65 KOG3970|consensus 97.0 0.00072 1.6E-08 51.7 3.2 51 52-103 50-108 (299)
66 PHA02825 LAP/PHD finger-like p 96.8 0.0014 3.1E-08 47.4 3.4 50 49-102 5-61 (162)
67 PF05883 Baculo_RING: Baculovi 96.8 0.00059 1.3E-08 48.2 1.3 36 52-87 26-67 (134)
68 PF12906 RINGv: RING-variant d 96.7 0.0011 2.3E-08 38.6 1.9 40 55-95 1-47 (47)
69 KOG0826|consensus 96.7 0.00079 1.7E-08 54.0 1.6 58 39-99 287-345 (357)
70 COG5222 Uncharacterized conser 96.7 0.0026 5.6E-08 50.6 4.3 42 53-97 275-318 (427)
71 COG5236 Uncharacterized conser 96.7 0.002 4.3E-08 52.2 3.6 69 29-101 39-109 (493)
72 KOG1002|consensus 96.7 0.00066 1.4E-08 57.7 0.9 48 49-99 533-585 (791)
73 KOG1428|consensus 96.6 0.0015 3.3E-08 61.2 2.8 49 51-99 3485-3543(3738)
74 KOG0801|consensus 96.6 0.00082 1.8E-08 48.9 0.9 38 42-79 167-204 (205)
75 KOG1571|consensus 96.5 0.0032 6.9E-08 51.1 3.9 45 51-101 304-348 (355)
76 KOG3039|consensus 96.4 0.0031 6.7E-08 48.9 3.2 53 51-103 220-273 (303)
77 KOG1952|consensus 96.4 0.0014 3E-08 58.3 1.4 52 47-98 186-245 (950)
78 PF04641 Rtf2: Rtf2 RING-finge 96.4 0.0056 1.2E-07 48.0 4.4 59 49-108 110-169 (260)
79 PHA02862 5L protein; Provision 96.3 0.0033 7.1E-08 44.9 2.6 47 53-103 3-56 (156)
80 KOG4739|consensus 96.2 0.0017 3.7E-08 50.0 0.9 46 54-102 5-50 (233)
81 COG5175 MOT2 Transcriptional r 96.2 0.0034 7.4E-08 50.8 2.4 53 52-104 14-68 (480)
82 PF08746 zf-RING-like: RING-li 96.1 0.0064 1.4E-07 34.6 2.7 38 55-95 1-43 (43)
83 KOG1940|consensus 96.0 0.0018 3.9E-08 51.1 0.1 54 52-106 158-212 (276)
84 PHA03096 p28-like protein; Pro 95.9 0.0034 7.5E-08 49.9 1.4 36 53-88 179-219 (284)
85 PF14447 Prok-RING_4: Prokaryo 95.8 0.0058 1.3E-07 36.5 1.5 45 52-101 7-51 (55)
86 KOG3268|consensus 95.4 0.0091 2E-07 44.2 1.8 30 71-100 188-228 (234)
87 KOG2114|consensus 95.4 0.013 2.8E-07 52.3 2.9 43 52-99 840-882 (933)
88 KOG4185|consensus 95.3 0.013 2.7E-07 46.6 2.6 47 53-99 4-54 (296)
89 PF10272 Tmpp129: Putative tra 95.3 0.039 8.5E-07 45.2 5.3 79 19-101 242-352 (358)
90 PF03854 zf-P11: P-11 zinc fin 95.3 0.0077 1.7E-07 34.9 0.8 33 70-102 15-48 (50)
91 PF07800 DUF1644: Protein of u 95.2 0.024 5.2E-07 41.1 3.4 33 51-86 1-46 (162)
92 KOG3002|consensus 94.8 0.018 3.9E-07 46.2 1.9 44 51-101 47-92 (299)
93 PF05290 Baculo_IE-1: Baculovi 94.6 0.025 5.5E-07 39.9 2.1 49 51-102 79-134 (140)
94 KOG1001|consensus 94.6 0.017 3.7E-07 51.1 1.5 50 53-106 455-506 (674)
95 PF14446 Prok-RING_1: Prokaryo 94.4 0.063 1.4E-06 32.0 3.2 40 51-94 4-44 (54)
96 KOG2817|consensus 94.3 0.037 8.1E-07 45.5 2.8 47 51-97 333-382 (394)
97 KOG4367|consensus 94.2 0.03 6.4E-07 46.9 2.1 36 50-88 2-37 (699)
98 KOG2932|consensus 93.9 0.022 4.8E-07 45.6 0.7 29 69-99 105-133 (389)
99 KOG2034|consensus 93.3 0.052 1.1E-06 48.9 2.0 36 50-86 815-850 (911)
100 KOG0309|consensus 92.6 0.06 1.3E-06 47.9 1.4 26 69-94 1044-1069(1081)
101 KOG0298|consensus 92.3 0.034 7.3E-07 51.8 -0.4 46 51-98 1152-1197(1394)
102 KOG1100|consensus 92.3 0.072 1.6E-06 40.5 1.4 40 55-101 161-201 (207)
103 KOG3800|consensus 92.1 0.14 3.1E-06 40.6 2.9 49 54-102 2-53 (300)
104 KOG0827|consensus 91.8 0.0075 1.6E-07 49.5 -4.7 50 53-102 197-247 (465)
105 PF02891 zf-MIZ: MIZ/SP-RING z 91.1 0.07 1.5E-06 31.3 0.2 42 54-98 4-50 (50)
106 KOG1609|consensus 90.6 0.16 3.4E-06 40.3 1.8 51 51-101 77-135 (323)
107 KOG1812|consensus 90.4 0.097 2.1E-06 43.4 0.5 37 52-88 146-183 (384)
108 KOG3899|consensus 89.7 0.19 4.1E-06 40.1 1.6 31 73-103 325-368 (381)
109 COG5183 SSM4 Protein involved 89.2 0.37 7.9E-06 43.5 3.1 54 48-102 8-68 (1175)
110 PF06906 DUF1272: Protein of u 88.1 0.94 2E-05 27.2 3.4 47 54-102 7-54 (57)
111 KOG3053|consensus 87.0 0.29 6.3E-06 38.3 1.0 52 51-102 19-84 (293)
112 COG5220 TFB3 Cdk activating ki 86.7 0.48 1E-05 36.9 2.0 49 51-99 9-63 (314)
113 KOG0824|consensus 86.7 0.68 1.5E-05 37.1 2.9 52 45-99 98-150 (324)
114 KOG1815|consensus 84.8 0.58 1.3E-05 39.5 1.8 37 50-88 68-104 (444)
115 KOG3113|consensus 83.9 1.2 2.7E-05 34.8 3.1 57 51-109 110-167 (293)
116 KOG4362|consensus 83.7 0.26 5.7E-06 43.5 -0.7 48 52-102 21-71 (684)
117 KOG1812|consensus 83.0 0.6 1.3E-05 38.8 1.2 44 52-95 306-351 (384)
118 KOG3039|consensus 82.7 1.2 2.6E-05 34.9 2.6 34 51-87 42-75 (303)
119 KOG3005|consensus 81.3 0.77 1.7E-05 36.2 1.2 48 53-100 183-243 (276)
120 PF13901 DUF4206: Domain of un 81.0 1.2 2.6E-05 33.6 2.1 41 51-96 151-196 (202)
121 KOG1829|consensus 80.9 0.87 1.9E-05 39.7 1.4 44 51-97 510-558 (580)
122 KOG0802|consensus 80.6 0.79 1.7E-05 39.7 1.1 53 47-106 474-526 (543)
123 KOG0269|consensus 80.5 1.4 3E-05 39.5 2.6 38 54-94 781-820 (839)
124 KOG3579|consensus 80.3 0.77 1.7E-05 36.6 0.9 39 51-90 267-307 (352)
125 KOG2807|consensus 80.1 2 4.3E-05 34.9 3.1 47 51-97 329-375 (378)
126 COG5109 Uncharacterized conser 79.0 1.6 3.4E-05 35.4 2.3 47 51-97 335-384 (396)
127 PF06844 DUF1244: Protein of u 76.2 1.6 3.4E-05 27.1 1.2 12 76-87 11-22 (68)
128 PF10571 UPF0547: Uncharacteri 76.1 1.3 2.9E-05 22.3 0.7 22 54-77 2-24 (26)
129 KOG2066|consensus 75.8 1.4 3.1E-05 39.5 1.3 43 52-95 784-830 (846)
130 KOG4718|consensus 75.7 1.4 3E-05 33.6 1.1 46 52-99 181-226 (235)
131 PF14569 zf-UDP: Zinc-binding 75.0 3.8 8.2E-05 26.3 2.7 53 51-103 8-65 (80)
132 KOG3161|consensus 74.1 0.97 2.1E-05 39.9 -0.1 40 52-93 11-51 (861)
133 COG3813 Uncharacterized protei 73.5 3.9 8.4E-05 25.9 2.5 47 55-103 8-55 (84)
134 KOG2068|consensus 72.3 2.8 6E-05 34.0 2.0 47 53-99 250-297 (327)
135 KOG0825|consensus 71.0 2.5 5.5E-05 38.3 1.7 49 51-99 95-153 (1134)
136 PF00628 PHD: PHD-finger; Int 67.4 3.1 6.7E-05 23.7 1.1 43 54-96 1-49 (51)
137 TIGR00622 ssl1 transcription f 67.0 9.9 0.00022 26.1 3.6 44 53-96 56-110 (112)
138 smart00249 PHD PHD zinc finger 65.4 4.6 9.9E-05 21.9 1.5 30 55-84 2-31 (47)
139 PF01363 FYVE: FYVE zinc finge 62.2 3.6 7.8E-05 25.1 0.7 35 52-86 9-44 (69)
140 KOG3842|consensus 61.5 8.1 0.00018 31.4 2.7 55 51-105 340-419 (429)
141 smart00132 LIM Zinc-binding do 60.2 9.4 0.0002 19.8 2.1 36 55-99 2-37 (39)
142 PF07975 C1_4: TFIIH C1-like d 60.2 6.5 0.00014 23.1 1.5 40 55-96 2-50 (51)
143 PLN02638 cellulose synthase A 59.7 11 0.00025 35.3 3.7 49 52-100 17-70 (1079)
144 PF02318 FYVE_2: FYVE-type zin 56.8 7.3 0.00016 26.7 1.6 46 51-97 53-102 (118)
145 PLN02248 cellulose synthase-li 56.7 21 0.00045 33.8 4.8 34 69-102 144-179 (1135)
146 PLN02189 cellulose synthase 56.6 13 0.00028 34.9 3.4 50 52-101 34-88 (1040)
147 cd00065 FYVE FYVE domain; Zinc 55.9 8.3 0.00018 22.4 1.5 34 53-86 3-37 (57)
148 PLN02436 cellulose synthase A 55.7 13 0.00029 34.9 3.4 49 52-100 36-89 (1094)
149 PLN02400 cellulose synthase 53.9 12 0.00026 35.2 2.8 49 52-100 36-89 (1085)
150 PF10497 zf-4CXXC_R1: Zinc-fin 53.7 14 0.00029 25.0 2.4 45 52-97 7-69 (105)
151 COG3492 Uncharacterized protei 52.5 7.5 0.00016 25.7 1.0 13 76-88 42-54 (104)
152 COG4847 Uncharacterized protei 51.1 18 0.00039 24.1 2.6 36 52-88 6-41 (103)
153 PF07191 zinc-ribbons_6: zinc- 48.6 3 6.4E-05 26.2 -1.3 41 53-101 2-42 (70)
154 smart00064 FYVE Protein presen 48.0 15 0.00033 22.1 1.9 35 52-86 10-45 (68)
155 PF04423 Rad50_zn_hook: Rad50 46.3 7.9 0.00017 22.6 0.3 12 91-102 22-33 (54)
156 PF13719 zinc_ribbon_5: zinc-r 46.3 13 0.00028 20.1 1.2 12 54-65 4-15 (37)
157 PF00412 LIM: LIM domain; Int 44.9 14 0.00031 21.2 1.4 40 55-103 1-40 (58)
158 PF04216 FdhE: Protein involve 42.8 3.8 8.2E-05 32.5 -1.9 46 51-99 171-221 (290)
159 PF05605 zf-Di19: Drought indu 42.4 12 0.00026 21.8 0.7 12 52-63 2-13 (54)
160 smart00647 IBR In Between Ring 41.8 4.5 9.7E-05 23.9 -1.3 18 68-85 40-58 (64)
161 PF13717 zinc_ribbon_4: zinc-r 40.8 13 0.00029 19.9 0.7 12 54-65 4-15 (36)
162 PLN02915 cellulose synthase A 40.7 47 0.001 31.3 4.5 51 51-101 14-69 (1044)
163 PRK11088 rrmA 23S rRNA methylt 40.6 21 0.00045 27.8 2.0 25 53-77 3-27 (272)
164 KOG1815|consensus 40.3 8.4 0.00018 32.5 -0.3 36 54-89 228-268 (444)
165 PF14169 YdjO: Cold-inducible 40.3 13 0.00029 22.5 0.7 31 68-102 16-52 (59)
166 PF06750 DiS_P_DiS: Bacterial 39.3 30 0.00065 22.7 2.3 40 51-102 32-71 (92)
167 PF09943 DUF2175: Uncharacteri 39.0 29 0.00063 23.4 2.2 33 54-87 4-36 (101)
168 PF07649 C1_3: C1-like domain; 37.3 25 0.00055 17.7 1.4 29 54-82 2-30 (30)
169 PLN02195 cellulose synthase A 36.3 56 0.0012 30.7 4.2 51 52-102 6-61 (977)
170 PF14311 DUF4379: Domain of un 35.5 23 0.00049 20.6 1.2 22 73-95 34-55 (55)
171 KOG2979|consensus 35.4 21 0.00045 28.1 1.2 44 53-98 177-222 (262)
172 PF10235 Cript: Microtubule-as 35.0 23 0.0005 23.4 1.2 40 52-103 44-83 (90)
173 KOG2113|consensus 33.5 38 0.00083 27.6 2.4 43 52-99 343-386 (394)
174 KOG1729|consensus 31.5 8 0.00017 31.0 -1.7 10 77-86 216-225 (288)
175 PF13771 zf-HC5HC2H: PHD-like 31.4 29 0.00064 22.0 1.3 33 52-84 36-68 (90)
176 KOG3799|consensus 30.5 12 0.00026 26.7 -0.7 42 50-98 63-116 (169)
177 KOG2071|consensus 29.6 31 0.00067 30.3 1.4 37 50-86 511-557 (579)
178 PF13832 zf-HC5HC2H_2: PHD-zin 28.0 38 0.00083 22.4 1.4 31 52-84 55-87 (110)
179 cd00350 rubredoxin_like Rubred 27.2 34 0.00073 17.8 0.8 9 90-98 18-26 (33)
180 PRK03564 formate dehydrogenase 27.1 32 0.00069 27.9 1.0 45 51-97 186-234 (309)
181 KOG0289|consensus 26.4 77 0.0017 27.1 3.2 48 54-104 2-50 (506)
182 PF14353 CpXC: CpXC protein 26.1 66 0.0014 22.0 2.4 46 54-102 3-51 (128)
183 PF01485 IBR: IBR domain; Int 26.0 7.1 0.00015 23.0 -2.3 32 54-85 20-58 (64)
184 KOG2231|consensus 25.8 52 0.0011 29.5 2.2 46 54-102 2-54 (669)
185 COG4647 AcxC Acetone carboxyla 25.7 43 0.00094 23.7 1.4 22 56-80 61-82 (165)
186 PF00130 C1_1: Phorbol esters/ 25.6 57 0.0012 18.4 1.7 34 51-84 10-45 (53)
187 PF11023 DUF2614: Protein of u 25.4 61 0.0013 22.3 2.0 22 84-105 80-101 (114)
188 PRK11595 DNA utilization prote 25.2 54 0.0012 24.9 2.0 22 77-98 22-43 (227)
189 COG5216 Uncharacterized conser 24.4 62 0.0013 19.7 1.7 32 65-97 17-52 (67)
190 KOG1245|consensus 23.5 28 0.0006 34.0 0.1 49 51-99 1107-1159(1404)
191 KOG1814|consensus 23.3 65 0.0014 27.2 2.2 36 51-86 367-405 (445)
192 PF09723 Zn-ribbon_8: Zinc rib 23.1 17 0.00037 20.1 -0.8 26 71-97 9-34 (42)
193 PF03119 DNA_ligase_ZBD: NAD-d 23.0 38 0.00083 17.1 0.5 13 91-103 1-13 (28)
194 COG3357 Predicted transcriptio 21.5 40 0.00087 22.3 0.5 19 89-107 76-94 (97)
195 smart00734 ZnF_Rad18 Rad18-lik 21.4 41 0.00088 16.6 0.4 9 91-99 3-11 (26)
196 PRK06266 transcription initiat 21.4 23 0.0005 26.2 -0.7 18 86-103 133-150 (178)
197 KOG0956|consensus 21.2 97 0.0021 28.2 2.9 29 69-97 42-70 (900)
198 PF05191 ADK_lid: Adenylate ki 20.6 34 0.00074 18.4 0.0 29 72-102 6-34 (36)
199 PF06676 DUF1178: Protein of u 20.2 67 0.0014 23.2 1.5 25 73-102 10-45 (148)
200 PF10146 zf-C4H2: Zinc finger- 20.1 69 0.0015 24.8 1.7 24 77-100 196-219 (230)
No 1
>KOG4628|consensus
Probab=99.71 E-value=3.4e-17 Score=131.11 Aligned_cols=83 Identities=43% Similarity=0.847 Sum_probs=71.1
Q ss_pred hhhhHHHHHHhhcCCCccccCCCCcCCCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC-ccccccccccc
Q psy12455 23 RRLCSAAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILK 101 (152)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~ 101 (152)
.+.....++.+.++|...+...+++... +.|+||+|+|..++++++|||+|.||..||..||.... .||+||+.+..
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4566789999999999999877666533 78999999999999999999999999999999999876 59999998876
Q ss_pred ccCccc
Q psy12455 102 HYGFVI 107 (152)
Q Consensus 102 ~~~~~~ 107 (152)
..+...
T Consensus 280 ~~~~~~ 285 (348)
T KOG4628|consen 280 DSGSEP 285 (348)
T ss_pred CCCCCC
Confidence 655543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.59 E-value=3.7e-16 Score=90.47 Aligned_cols=43 Identities=40% Similarity=1.110 Sum_probs=40.0
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCK 96 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr 96 (152)
.|+||++.|..++.++.++|+|.||..||..|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999998888899999999999999999999999999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2e-14 Score=115.03 Aligned_cols=77 Identities=27% Similarity=0.700 Sum_probs=56.8
Q ss_pred HhhhhhHHHHHHhhcCCCccccCCCCcCCCCCccccccccCc-cCC---------CcEEEecCCCcccHhhHHHHHhCCC
Q psy12455 21 KQRRLCSAAKKALSKIPTKHIKGEDKEISGDGECCAICIEFY-KPS---------DIVRILPCKHEYHKNCIDPWLLEHR 90 (152)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~C~IC~~~~-~~~---------~~~~~lpC~H~fh~~Ci~~w~~~~~ 90 (152)
...+...+.++.-..+++. ..+++..++..|.|||+++ ..+ ...+.+||||.||.+|++-|+++++
T Consensus 260 ~~~~~~r~~kdl~~~~~t~----t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ 335 (491)
T COG5243 260 EHARFRRATKDLNAMYPTA----TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ 335 (491)
T ss_pred HHHHHHHHhhHHHhhcchh----hhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc
Confidence 3344445555555555544 4455566888999999994 333 1347899999999999999999999
Q ss_pred ccccccccccc
Q psy12455 91 TCPMCKMDILK 101 (152)
Q Consensus 91 ~CP~Cr~~~~~ 101 (152)
+||+||.++..
T Consensus 336 TCPICr~p~if 346 (491)
T COG5243 336 TCPICRRPVIF 346 (491)
T ss_pred CCCcccCcccc
Confidence 99999999543
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.41 E-value=2.4e-13 Score=104.64 Aligned_cols=76 Identities=30% Similarity=0.547 Sum_probs=56.9
Q ss_pred hHHHHHHhhcCCCccccCCCCcCCCCCccccccccCccCCCc-----EEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 26 CSAAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDI-----VRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~-----~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
+...+..+..+|..............+.+|+||++.+..++. .+.++|+|.||..||..|+..+.+||+||..+.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 444778888888876543333223356789999999765431 244569999999999999999999999999876
Q ss_pred c
Q psy12455 101 K 101 (152)
Q Consensus 101 ~ 101 (152)
.
T Consensus 228 ~ 228 (238)
T PHA02929 228 S 228 (238)
T ss_pred E
Confidence 4
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.38 E-value=1.2e-12 Score=97.29 Aligned_cols=56 Identities=25% Similarity=0.580 Sum_probs=45.3
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC----------------CCcccccccccccccCccccC
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE----------------HRTCPMCKMDILKHYGFVILA 109 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~----------------~~~CP~Cr~~~~~~~~~~~~~ 109 (152)
++..|+||++.+.++ +.++|||.||+.||..|+.. ...||+||..+....-+++..
T Consensus 17 ~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 17 GDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 568899999999877 88899999999999999852 237999999997655444433
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.34 E-value=1e-12 Score=84.00 Aligned_cols=45 Identities=38% Similarity=0.902 Sum_probs=36.1
Q ss_pred CccccccccCccCC----------CcEEEecCCCcccHhhHHHHHhCCCcccccc
Q psy12455 52 GECCAICIEFYKPS----------DIVRILPCKHEYHKNCIDPWLLEHRTCPMCK 96 (152)
Q Consensus 52 ~~~C~IC~~~~~~~----------~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr 96 (152)
+..|+||++.|..+ -.+...+|||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 44599999999432 2345667999999999999999999999997
No 7
>KOG0823|consensus
Probab=99.30 E-value=5.5e-12 Score=95.50 Aligned_cols=58 Identities=24% Similarity=0.580 Sum_probs=47.5
Q ss_pred CCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC---cccccccccccccCccccC
Q psy12455 49 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCKMDILKHYGFVILA 109 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~---~CP~Cr~~~~~~~~~~~~~ 109 (152)
....+.|.||++.-+++ +++.|||+||+.||.+|+.... .||+|+..+....-++...
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 34678899999998777 8888999999999999998643 6999999887765554443
No 8
>KOG0317|consensus
Probab=99.23 E-value=5.4e-12 Score=98.21 Aligned_cols=55 Identities=25% Similarity=0.622 Sum_probs=47.1
Q ss_pred CCcCCCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 45 DKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 45 ~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
+....+....|.+|++....+ ..+||||+||+.||..|...+..||+||..+...
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 334455667899999998887 8899999999999999999999999999987543
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.22 E-value=8e-12 Score=74.08 Aligned_cols=46 Identities=35% Similarity=0.844 Sum_probs=39.0
Q ss_pred CccccccccCccCCCcEEEecCCCc-ccHhhHHHHHhCCCcccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
+..|.||++.... +..+||||. ||..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4569999998654 488999999 999999999999999999999874
No 10
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.20 E-value=9.8e-12 Score=71.14 Aligned_cols=38 Identities=34% Similarity=1.022 Sum_probs=30.5
Q ss_pred ccccccCccCCCcEEEecCCCcccHhhHHHHHhCC----Cccccc
Q psy12455 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH----RTCPMC 95 (152)
Q Consensus 55 C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~----~~CP~C 95 (152)
|+||++.|..+ +.++|||+||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 999999999999999999764 269887
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.1e-11 Score=97.13 Aligned_cols=50 Identities=42% Similarity=1.080 Sum_probs=45.0
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC-CCcccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~ 100 (152)
...+|+|||+.|...+.++.+||.|.||..|+..|+.. +..||+||.+++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 35679999999988888999999999999999999984 568999999875
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.14 E-value=3.4e-11 Score=67.76 Aligned_cols=39 Identities=36% Similarity=1.027 Sum_probs=32.7
Q ss_pred ccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccc
Q psy12455 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMC 95 (152)
Q Consensus 55 C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~C 95 (152)
|+||++.+.. .++.++|||+||..|+.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 7899999865 34678899999999999999998899987
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.08 E-value=1e-10 Score=66.60 Aligned_cols=44 Identities=43% Similarity=1.115 Sum_probs=35.6
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhC-CCccccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDI 99 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~ 99 (152)
.|+||++.+.. .+...+|+|.||..|+..|+.. +..||.|+..+
T Consensus 1 ~C~iC~~~~~~--~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999833 3344559999999999999997 66899998753
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.02 E-value=3.2e-10 Score=69.89 Aligned_cols=45 Identities=33% Similarity=0.632 Sum_probs=41.2
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
..|+||.+.+.++ +.++|||+|++.||..|+..+..||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999999988 88999999999999999998889999998774
No 15
>KOG0320|consensus
Probab=99.02 E-value=2.3e-10 Score=83.59 Aligned_cols=64 Identities=22% Similarity=0.410 Sum_probs=48.0
Q ss_pred ccccCCCCcCCCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 39 KHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 39 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
...+..+....+..+.|+|||+.+.... .+-+.|||+||..||+..++....||+|++.+....
T Consensus 118 ~~~k~v~~~~~~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 118 RRDKDVDPLRKEGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccccccccccccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 3333334444456788999999986542 244679999999999999999999999998775543
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.00 E-value=2.4e-10 Score=64.73 Aligned_cols=39 Identities=38% Similarity=1.160 Sum_probs=33.2
Q ss_pred ccccccCccCCCcEEEecCCCcccHhhHHHHHh--CCCccccc
Q psy12455 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL--EHRTCPMC 95 (152)
Q Consensus 55 C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~--~~~~CP~C 95 (152)
|+||++.+..+ ...++|||.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 78999998766 24788999999999999999 44579987
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.97 E-value=1.6e-10 Score=87.33 Aligned_cols=50 Identities=26% Similarity=0.723 Sum_probs=38.1
Q ss_pred CCccccccccCccCC-----CcEEEe-cCCCcccHhhHHHHHhCC------Ccccccccccc
Q psy12455 51 DGECCAICIEFYKPS-----DIVRIL-PCKHEYHKNCIDPWLLEH------RTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~-----~~~~~l-pC~H~fh~~Ci~~w~~~~------~~CP~Cr~~~~ 100 (152)
.+.+|+|||+....+ ....+| +|+|.||..||..|...+ .+||+||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 567899999986432 122344 599999999999999753 36999999775
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.96 E-value=6.3e-10 Score=64.18 Aligned_cols=44 Identities=27% Similarity=0.730 Sum_probs=37.4
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 97 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~ 97 (152)
.|.||++.|.......+++|||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 38999999955556788999999999999999855668999974
No 19
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.96 E-value=6.6e-10 Score=72.31 Aligned_cols=51 Identities=29% Similarity=0.709 Sum_probs=38.9
Q ss_pred CCccccccccCccC--------CC--cEEEecCCCcccHhhHHHHHhC---CCccccccccccc
Q psy12455 51 DGECCAICIEFYKP--------SD--IVRILPCKHEYHKNCIDPWLLE---HRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~--------~~--~~~~lpC~H~fh~~Ci~~w~~~---~~~CP~Cr~~~~~ 101 (152)
+++.|.||+..|.. ++ .++.-.|+|.||..||.+|+.. ++.||+||+.+..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 36679999988862 11 2344459999999999999986 4589999998753
No 20
>KOG0802|consensus
Probab=98.91 E-value=7.7e-10 Score=94.70 Aligned_cols=53 Identities=30% Similarity=0.792 Sum_probs=45.0
Q ss_pred CCCccccccccCccCCCc--EEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDI--VRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~--~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
..+..|.||+|.+..+.. ..+++|+|.||..|+..|+++.++||.||..+...
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 357789999999987432 48899999999999999999999999999955443
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.91 E-value=1.5e-09 Score=59.66 Aligned_cols=38 Identities=45% Similarity=1.192 Sum_probs=32.1
Q ss_pred ccccccCccCCCcEEEecCCCcccHhhHHHHHh-CCCccccc
Q psy12455 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL-EHRTCPMC 95 (152)
Q Consensus 55 C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~-~~~~CP~C 95 (152)
|+||++..... ..++|+|.||..|+..|+. .+..||.|
T Consensus 1 C~iC~~~~~~~---~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDP---VVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCc---EEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999885444 8889999999999999998 55679987
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=9.8e-10 Score=90.26 Aligned_cols=49 Identities=24% Similarity=0.695 Sum_probs=43.6
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
+....|+||++.|..+ ++++|||.||..||..|+.....||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3567899999999887 788999999999999999988899999998754
No 23
>KOG0287|consensus
Probab=98.76 E-value=2.5e-09 Score=85.23 Aligned_cols=49 Identities=31% Similarity=0.761 Sum_probs=44.7
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
+-..|.||++.|..+ +++||+|.||..||..+|..+..||.|+.++.+.
T Consensus 22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 456799999999999 9999999999999999999999999999988654
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.1e-09 Score=80.41 Aligned_cols=50 Identities=22% Similarity=0.608 Sum_probs=42.2
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHH-HHhCCCc-ccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDP-WLLEHRT-CPMCKMDILKH 102 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~-w~~~~~~-CP~Cr~~~~~~ 102 (152)
..++.|.||++....+ ..++|||+||..||.. |=..+.. ||+||+.....
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 4578899999997776 8999999999999999 7666665 99999977544
No 25
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.65 E-value=1.4e-08 Score=58.17 Aligned_cols=34 Identities=29% Similarity=0.779 Sum_probs=21.4
Q ss_pred ccccccCccCC-CcEEEecCCCcccHhhHHHHHhCC
Q psy12455 55 CAICIEFYKPS-DIVRILPCKHEYHKNCIDPWLLEH 89 (152)
Q Consensus 55 C~IC~~~~~~~-~~~~~lpC~H~fh~~Ci~~w~~~~ 89 (152)
|+||.+ |... ...+.|+|||+|+..||.+|+...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 7553 345889999999999999999853
No 26
>KOG2164|consensus
Probab=98.63 E-value=1.5e-08 Score=84.48 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=41.2
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCC-----Cccccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-----RTCPMCKMDILKHY 103 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~~~ 103 (152)
+..|+||++....+ ..+.|||+||..||.++|... ..||+||..+.-..
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 77899999987666 777799999999999999764 37999999886643
No 27
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.62 E-value=2.6e-08 Score=63.54 Aligned_cols=49 Identities=29% Similarity=0.539 Sum_probs=39.3
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC-CCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 102 (152)
+.+.|+|+.+.|.++ +++++||+|.+.+|..|+.. ...||+|+..+...
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 356799999999999 99999999999999999999 77999998887654
No 28
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.62 E-value=3.7e-08 Score=62.89 Aligned_cols=31 Identities=29% Similarity=0.777 Sum_probs=28.3
Q ss_pred cCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 72 PCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 72 pC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
-|.|.||..||.+||..++.||++|+++...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 3999999999999999999999999988654
No 29
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.59 E-value=2.1e-08 Score=78.60 Aligned_cols=48 Identities=25% Similarity=0.435 Sum_probs=43.1
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
.-..|.||-+.|..+ ..++|||.||..||...|..+..||+||....+
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 345699999999988 889999999999999999999999999987643
No 30
>KOG2177|consensus
Probab=98.47 E-value=4.9e-08 Score=75.58 Aligned_cols=45 Identities=27% Similarity=0.862 Sum_probs=40.0
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 97 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~ 97 (152)
.+...|+||++.|..+ ++++|+|.||..|+..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4677899999999988 89999999999999999985558999993
No 31
>KOG0828|consensus
Probab=98.44 E-value=6.8e-08 Score=80.34 Aligned_cols=51 Identities=24% Similarity=0.675 Sum_probs=39.9
Q ss_pred CCCccccccccCccCC--------------CcEEEecCCCcccHhhHHHHHhCC-Ccccccccccc
Q psy12455 50 GDGECCAICIEFYKPS--------------DIVRILPCKHEYHKNCIDPWLLEH-RTCPMCKMDIL 100 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~--------------~~~~~lpC~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~ 100 (152)
+....|+|||..+.-. ...+.+||.|+||..||..|++.- -.||+||.+++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 3556799999986421 113457999999999999999954 48999999885
No 32
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.42 E-value=2.2e-07 Score=54.72 Aligned_cols=42 Identities=31% Similarity=0.833 Sum_probs=32.6
Q ss_pred cccccccCccCCCcEEEecCC-----CcccHhhHHHHHhCCC--cccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCK-----HEYHKNCIDPWLLEHR--TCPMCK 96 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~-----H~fh~~Ci~~w~~~~~--~CP~Cr 96 (152)
.|.||++ ...++.....||. |.+|..||.+|+..+. +||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3899998 3344555678975 7899999999997644 899984
No 33
>KOG1734|consensus
Probab=98.41 E-value=7.7e-08 Score=74.64 Aligned_cols=53 Identities=30% Similarity=0.656 Sum_probs=43.3
Q ss_pred CCccccccccCccCCC-------cEEEecCCCcccHhhHHHHHhC--CCccccccccccccc
Q psy12455 51 DGECCAICIEFYKPSD-------IVRILPCKHEYHKNCIDPWLLE--HRTCPMCKMDILKHY 103 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~-------~~~~lpC~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~~~ 103 (152)
++..|.||-..+.... +...|.|+|+||..||+.|-.. +++||.|+..+....
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 5778999988876554 5788999999999999999854 569999988775443
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=2.6e-07 Score=73.49 Aligned_cols=53 Identities=23% Similarity=0.611 Sum_probs=38.1
Q ss_pred CCccccccccC-ccCCC-cEEEecCCCcccHhhHHHHHhC-CCccccccccccccc
Q psy12455 51 DGECCAICIEF-YKPSD-IVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKHY 103 (152)
Q Consensus 51 ~~~~C~IC~~~-~~~~~-~~~~lpC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~ 103 (152)
++..|++|... +..++ .+.+.+|||.||..|+...|.. ...||.|+..+....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 34679999995 22333 2333369999999999997754 458999998886553
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.30 E-value=1.3e-07 Score=59.80 Aligned_cols=49 Identities=27% Similarity=0.733 Sum_probs=22.6
Q ss_pred CccccccccCcc-CCCc-EEEe---cCCCcccHhhHHHHHhC----C-------Ccccccccccc
Q psy12455 52 GECCAICIEFYK-PSDI-VRIL---PCKHEYHKNCIDPWLLE----H-------RTCPMCKMDIL 100 (152)
Q Consensus 52 ~~~C~IC~~~~~-~~~~-~~~l---pC~H~fh~~Ci~~w~~~----~-------~~CP~Cr~~~~ 100 (152)
+..|.||+..+. .++. ...- .|+..||..||.+||.. + +.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 346999999865 3222 1222 38999999999999953 1 25999998874
No 36
>KOG1493|consensus
Probab=98.29 E-value=1.7e-07 Score=59.35 Aligned_cols=49 Identities=33% Similarity=0.754 Sum_probs=36.0
Q ss_pred CccccccccCccC--------CCcE-EEec-CCCcccHhhHHHHHhCC---Ccccccccccc
Q psy12455 52 GECCAICIEFYKP--------SDIV-RILP-CKHEYHKNCIDPWLLEH---RTCPMCKMDIL 100 (152)
Q Consensus 52 ~~~C~IC~~~~~~--------~~~~-~~lp-C~H~fh~~Ci~~w~~~~---~~CP~Cr~~~~ 100 (152)
+..|-||...|.. ++.. ..+- |.|.||..||.+|+... ..||+||+.+.
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3479999888852 2211 2232 99999999999999763 47999999774
No 37
>KOG1785|consensus
Probab=98.25 E-value=5.5e-07 Score=73.45 Aligned_cols=58 Identities=33% Similarity=0.700 Sum_probs=48.5
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhC--CCcccccccccccccCccccCCCcc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE--HRTCPMCKMDILKHYGFVILAHSPL 113 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~~~~~~~~~~~~~ 113 (152)
..|-||.|. .+.+.+-||||..|..||..|-.. .+.||.||..+.+...+.++.+.+.
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid~F~pr 429 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIIDPFDPR 429 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccceeeeccCCC
Confidence 459999887 556688999999999999999855 3589999999999888877777664
No 38
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.19 E-value=5.9e-07 Score=79.75 Aligned_cols=51 Identities=27% Similarity=0.771 Sum_probs=37.5
Q ss_pred CCCccccccccCcc-CCC--cEEEec-CCCcccHhhHHHHHhCC--Ccccccccccc
Q psy12455 50 GDGECCAICIEFYK-PSD--IVRILP-CKHEYHKNCIDPWLLEH--RTCPMCKMDIL 100 (152)
Q Consensus 50 ~~~~~C~IC~~~~~-~~~--~~~~lp-C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 100 (152)
.+..+|+||+..+. ... +-...+ |.|.||..|+.+|+... ..||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 35677999998775 110 112333 99999999999999874 48999997664
No 39
>KOG2930|consensus
Probab=98.14 E-value=1.7e-06 Score=57.92 Aligned_cols=52 Identities=25% Similarity=0.622 Sum_probs=38.4
Q ss_pred CCccccccccCc-------------cCCCcEEEec-CCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFY-------------KPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~-------------~~~~~~~~lp-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
..+.|+||..-+ ...+.++.+- |.|.||..||.+|++++..||+|.+.+...
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQ 110 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEe
Confidence 355688886543 1123334444 999999999999999999999998877543
No 40
>KOG4265|consensus
Probab=98.12 E-value=1.9e-06 Score=69.27 Aligned_cols=54 Identities=24% Similarity=0.647 Sum_probs=44.1
Q ss_pred CCCccccccccCccCCCcEEEecCCCc-ccHhhHHHHHhCCCcccccccccccccCcc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKHYGFV 106 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 106 (152)
+...+|.||+.+-.+ +.+|||.|. .|..|-+...-++..||+||+++.....+.
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 456789999998544 499999995 999999998877889999999987665443
No 41
>KOG0827|consensus
Probab=98.11 E-value=1.2e-06 Score=71.13 Aligned_cols=49 Identities=27% Similarity=0.783 Sum_probs=37.2
Q ss_pred ccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCC---Cccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEH---RTCPMCKMDILK 101 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~---~~CP~Cr~~~~~ 101 (152)
..|.||.+.+.....+.-+. |||+||..|+.+|+..- ..||.|+-.+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 46999966665555555555 99999999999999863 479999844433
No 42
>KOG0804|consensus
Probab=98.09 E-value=1.3e-06 Score=72.05 Aligned_cols=48 Identities=25% Similarity=0.714 Sum_probs=38.1
Q ss_pred CCccccccccCccCCC-cEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 51 DGECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
+.-.|+||+|.|.... .+..+.|.|.||..|+..|+. .+||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 4457999999997653 345566999999999999975 48999987654
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.07 E-value=6.8e-07 Score=55.08 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=23.5
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
...|++|.+.|..+ +....|.|+||..|+..-+. ..||+|+.+...+
T Consensus 7 lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q 53 (65)
T PF14835_consen 7 LLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ 53 (65)
T ss_dssp TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred hcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence 45699999999777 23445999999999988544 3599998876444
No 44
>KOG4159|consensus
Probab=98.06 E-value=2.8e-06 Score=70.07 Aligned_cols=50 Identities=24% Similarity=0.690 Sum_probs=45.4
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
..++.|.||+..+..+ +.+||||.||..||.+-+..+..||.||..+...
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccccc
Confidence 4788999999999988 8889999999999999888888999999999864
No 45
>KOG0311|consensus
Probab=97.96 E-value=9.4e-07 Score=70.94 Aligned_cols=54 Identities=24% Similarity=0.569 Sum_probs=43.2
Q ss_pred CCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhC-CCcccccccccccccCccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLE-HRTCPMCKMDILKHYGFVI 107 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~~~~~ 107 (152)
.+..|+||++.+... +..+ |.|.||..||..-+.. +..||.||+.+...-.+..
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~ 97 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRI 97 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCC
Confidence 466799999998765 6666 9999999999887765 5589999999877655443
No 46
>KOG4445|consensus
Probab=97.90 E-value=4.7e-06 Score=65.75 Aligned_cols=53 Identities=25% Similarity=0.577 Sum_probs=44.0
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHh-----------------------CCCccccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL-----------------------EHRTCPMCKMDILKHY 103 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~-----------------------~~~~CP~Cr~~~~~~~ 103 (152)
....|.||+.-|.....+..++|-|.||..|+.++|. .+..||+||..+....
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 4567999999999998888999999999999988871 1226999999987654
No 47
>KOG0824|consensus
Probab=97.89 E-value=5.3e-06 Score=65.43 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=40.5
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhC-CCccccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKHY 103 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~ 103 (152)
..+|.||+.....+ +.++|+|.||.-||+.-+.. ...|++||.++....
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 44599999987666 88999999999999876655 457999999997654
No 48
>KOG4172|consensus
Probab=97.87 E-value=3.2e-06 Score=50.30 Aligned_cols=47 Identities=28% Similarity=0.521 Sum_probs=36.9
Q ss_pred CccccccccCccCCCcEEEecCCC-cccHhhHHHHHh-CCCccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKH-EYHKNCIDPWLL-EHRTCPMCKMDILK 101 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H-~fh~~Ci~~w~~-~~~~CP~Cr~~~~~ 101 (152)
.++|.||+|.-.+. ++.-||| -.|..|-.+.++ .+..||+||+++..
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 36799999985444 6666999 589999877666 67799999998854
No 49
>KOG1039|consensus
Probab=97.72 E-value=1.4e-05 Score=64.90 Aligned_cols=50 Identities=32% Similarity=0.852 Sum_probs=38.0
Q ss_pred CCccccccccCccCCC----cEEEec-CCCcccHhhHHHHH--hC-----CCcccccccccc
Q psy12455 51 DGECCAICIEFYKPSD----IVRILP-CKHEYHKNCIDPWL--LE-----HRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~----~~~~lp-C~H~fh~~Ci~~w~--~~-----~~~CP~Cr~~~~ 100 (152)
.+..|.|||+...... ...++| |.|.||..||..|- .+ ...||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4677999999875432 123456 99999999999998 33 358999998653
No 50
>KOG0978|consensus
Probab=97.57 E-value=1.5e-05 Score=69.59 Aligned_cols=48 Identities=23% Similarity=0.564 Sum_probs=37.8
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCC-Ccccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~~ 102 (152)
-..|++|-....+ +++..|+|+||..|+...+... ..||.|...+...
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4569999876544 3667799999999999999864 4899998877443
No 51
>KOG0297|consensus
Probab=97.57 E-value=3.1e-05 Score=64.09 Aligned_cols=54 Identities=20% Similarity=0.613 Sum_probs=45.6
Q ss_pred CCCccccccccCccCCCcEEE-ecCCCcccHhhHHHHHhCCCcccccccccccccCcc
Q psy12455 50 GDGECCAICIEFYKPSDIVRI-LPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV 106 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 106 (152)
.++..|++|+..+.++ .. +.|||.||..|+..|+..+..||.|+..+.......
T Consensus 19 ~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 3567899999999888 55 479999999999999999999999988886655443
No 52
>KOG4692|consensus
Probab=97.55 E-value=9.8e-05 Score=59.71 Aligned_cols=69 Identities=23% Similarity=0.566 Sum_probs=50.6
Q ss_pred HHHhhcCCCccccCCCCcCC-CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 30 KKALSKIPTKHIKGEDKEIS-GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~-~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
...+..++.......+..+. .++..|+||+.. +...+..||+|.-|+.||.+.+-..+.|-.|+..+..
T Consensus 399 ~r~~~~l~~~~~~~~~~~lp~sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 399 NRASSQLPERKEESFNKDLPDSEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred HHHHhhcchhhHHhhcCCCCCcccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 33444455444433333333 367789999766 5555889999999999999999999999999988764
No 53
>KOG0825|consensus
Probab=97.55 E-value=1.5e-05 Score=69.79 Aligned_cols=52 Identities=15% Similarity=0.313 Sum_probs=41.3
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccccC
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYG 104 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 104 (152)
..|++|+..+.+.......+|+|.||..||..|-+...+||+||..+.....
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeee
Confidence 3477777766655545566799999999999999999999999998766543
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.50 E-value=8.1e-05 Score=45.14 Aligned_cols=41 Identities=20% Similarity=0.509 Sum_probs=27.6
Q ss_pred CCccccccccCccCCCcEEE-ecCCCcccHhhHHHHHhCC--Ccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRI-LPCKHEYHKNCIDPWLLEH--RTCPM 94 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~w~~~~--~~CP~ 94 (152)
-...|+|.+..|.+| +. ..|+|+|-+..|.+|+..+ ..||+
T Consensus 10 ~~~~CPiT~~~~~~P---V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP---VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE---EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC---cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 356799999999877 55 4699999999999999443 37998
No 55
>KOG1941|consensus
Probab=97.49 E-value=5.1e-05 Score=62.01 Aligned_cols=46 Identities=28% Similarity=0.721 Sum_probs=38.2
Q ss_pred CccccccccCccCC-CcEEEecCCCcccHhhHHHHHhCCC--ccccccc
Q psy12455 52 GECCAICIEFYKPS-DIVRILPCKHEYHKNCIDPWLLEHR--TCPMCKM 97 (152)
Q Consensus 52 ~~~C~IC~~~~~~~-~~~~~lpC~H~fh~~Ci~~w~~~~~--~CP~Cr~ 97 (152)
+..|..|-+.+... +..-.+||.|+||..|+...+.++. +||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45699999987643 4567799999999999999998765 8999994
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.40 E-value=5.2e-05 Score=56.77 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=42.9
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
.+.|.||-++|..+ +.+.|||.||..|...-++....|-+|.+......
T Consensus 196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f 244 (259)
T COG5152 196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRF 244 (259)
T ss_pred ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhhccce
Confidence 56799999999988 78889999999999998888889999988776554
No 57
>KOG2660|consensus
Probab=97.31 E-value=4.9e-05 Score=60.71 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=41.9
Q ss_pred CCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
....|.+|-..|.+. .++. |-|.||++||...|.....||.|...+...
T Consensus 14 ~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 456799999999877 5555 999999999999999999999998877554
No 58
>KOG1645|consensus
Probab=97.29 E-value=0.00018 Score=59.12 Aligned_cols=49 Identities=31% Similarity=0.830 Sum_probs=37.2
Q ss_pred CCccccccccCccCCC--cEEEecCCCcccHhhHHHHHhCC--Cccccccccc
Q psy12455 51 DGECCAICIEFYKPSD--IVRILPCKHEYHKNCIDPWLLEH--RTCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~--~~~~lpC~H~fh~~Ci~~w~~~~--~~CP~Cr~~~ 99 (152)
....|+||++.+..+- .++.+.|||.|...||+.|+.+. ..||.|...-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 3457999999886543 34556699999999999999632 2799996644
No 59
>KOG2879|consensus
Probab=97.15 E-value=0.0012 Score=51.76 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=39.6
Q ss_pred CCcCCCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC--CCcccccccccc
Q psy12455 45 DKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE--HRTCPMCKMDIL 100 (152)
Q Consensus 45 ~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~ 100 (152)
+......+.+|++|-+.-..| ....+|+|+||+.|+..-+.. ...||.|..+..
T Consensus 232 sss~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 232 SSSTGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 333444677899998875444 344569999999999886654 358999987664
No 60
>KOG1813|consensus
Probab=97.14 E-value=0.00017 Score=56.97 Aligned_cols=49 Identities=16% Similarity=0.417 Sum_probs=42.9
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
.+.|.||...|..+ +.+.|+|.||..|...-++....|.+|.+......
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 45699999999998 88899999999999998888889999988776553
No 61
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.07 E-value=0.00025 Score=47.74 Aligned_cols=32 Identities=25% Similarity=0.697 Sum_probs=26.9
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHH
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCID 83 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~ 83 (152)
+...|++|...+.. ..+...||||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 45669999999976 567778999999999974
No 62
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.04 E-value=0.00045 Score=40.30 Aligned_cols=44 Identities=27% Similarity=0.619 Sum_probs=22.0
Q ss_pred ccccccCccCCCcEEEec--CCCcccHhhHHHHHh-CCCccccccccc
Q psy12455 55 CAICIEFYKPSDIVRILP--CKHEYHKNCIDPWLL-EHRTCPMCKMDI 99 (152)
Q Consensus 55 C~IC~~~~~~~~~~~~lp--C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~ 99 (152)
|++|.+.+...+ ....| |++.+|..|+..-++ ..+.||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999884322 13344 899999999999886 477999999864
No 63
>KOG1814|consensus
Probab=97.03 E-value=0.00031 Score=57.76 Aligned_cols=49 Identities=27% Similarity=0.552 Sum_probs=38.7
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCC---C-----ccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH---R-----TCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~---~-----~CP~Cr~~~ 99 (152)
..+.|.||++...-...+..+||+|+||..|+..++... + .||-+...-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS 239 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence 566799999998766788999999999999999998531 1 577665543
No 64
>KOG4275|consensus
Probab=96.99 E-value=0.00015 Score=57.16 Aligned_cols=45 Identities=27% Similarity=0.626 Sum_probs=36.0
Q ss_pred CccccccccCccCCCcEEEecCCC-cccHhhHHHHHhCCCccccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKH-EYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H-~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
...|.|||+. +...+.|+||| +-|..|-+.+ ..||+||+.+....
T Consensus 300 ~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rvv 345 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRVV 345 (350)
T ss_pred HHHHHHHhcC---CcceEEeecCcEEeehhhcccc----ccCchHHHHHHHHH
Confidence 6679999988 66669999999 6888887553 37999999886543
No 65
>KOG3970|consensus
Probab=96.98 E-value=0.00072 Score=51.67 Aligned_cols=51 Identities=25% Similarity=0.613 Sum_probs=40.6
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhC--------CCccccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE--------HRTCPMCKMDILKHY 103 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~--------~~~CP~Cr~~~~~~~ 103 (152)
...|.+|--.+..++.++ |-|-|+||+.|+.+|-.. ...||.|..+++...
T Consensus 50 ~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 456999999988776555 669999999999999854 227999999886543
No 66
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.80 E-value=0.0014 Score=47.42 Aligned_cols=50 Identities=26% Similarity=0.640 Sum_probs=36.7
Q ss_pred CCCCccccccccCccCCCcEEEecCC--C---cccHhhHHHHHhCCC--cccccccccccc
Q psy12455 49 SGDGECCAICIEFYKPSDIVRILPCK--H---EYHKNCIDPWLLEHR--TCPMCKMDILKH 102 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~~~~lpC~--H---~fh~~Ci~~w~~~~~--~CP~Cr~~~~~~ 102 (152)
+..+..|-||++.... ..-||. . ..|..|+..|+...+ .|+.|+.++.-.
T Consensus 5 s~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 5 SLMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 3456779999988532 234654 4 569999999998644 799999887544
No 67
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.78 E-value=0.00059 Score=48.15 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=30.1
Q ss_pred CccccccccCccCCCcEEEecCC------CcccHhhHHHHHh
Q psy12455 52 GECCAICIEFYKPSDIVRILPCK------HEYHKNCIDPWLL 87 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~------H~fh~~Ci~~w~~ 87 (152)
..+|.||++.+...+.++.++|+ |.||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 45699999999875677878876 8899999999943
No 68
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.72 E-value=0.0011 Score=38.61 Aligned_cols=40 Identities=35% Similarity=0.986 Sum_probs=26.1
Q ss_pred ccccccCccCCCcEEEecCC--C---cccHhhHHHHHhC--CCccccc
Q psy12455 55 CAICIEFYKPSDIVRILPCK--H---EYHKNCIDPWLLE--HRTCPMC 95 (152)
Q Consensus 55 C~IC~~~~~~~~~~~~lpC~--H---~fh~~Ci~~w~~~--~~~CP~C 95 (152)
|-||++.-.... ..+.||+ - ..|..||..|+.. +..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678888765443 3557754 3 7899999999985 4478876
No 69
>KOG0826|consensus
Probab=96.69 E-value=0.00079 Score=53.95 Aligned_cols=58 Identities=19% Similarity=0.453 Sum_probs=44.5
Q ss_pred ccccCCCCcCCCCCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCCCccccccccc
Q psy12455 39 KHIKGEDKEISGDGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDI 99 (152)
Q Consensus 39 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 99 (152)
..+..+.+....+...|++|+..-.++ ..+- -|-+||+.|+-.++...+.||+-..+.
T Consensus 287 ~~~~se~e~l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 287 KQYNSESELLPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred hhcccccccCCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 344455555666778899999987766 3443 699999999999999999999865543
No 70
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.67 E-value=0.0026 Score=50.62 Aligned_cols=42 Identities=29% Similarity=0.698 Sum_probs=34.5
Q ss_pred ccccccccCccCCCcEEEec-CCCcccHhhHHHHHh-CCCccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLL-EHRTCPMCKM 97 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~-~~~~CP~Cr~ 97 (152)
..|+.|...+..+ ..+| |+|.||..||..-|. .-..||.|..
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 5599999988877 6676 999999999986664 5668999955
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.66 E-value=0.002 Score=52.25 Aligned_cols=69 Identities=23% Similarity=0.470 Sum_probs=47.0
Q ss_pred HHHHhhcCCCccccCCCCcCCCCCccccccccCccCCCcEEEecCCCcccHhhHHH--HHhCCCccccccccccc
Q psy12455 29 AKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDP--WLLEHRTCPMCKMDILK 101 (152)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~--w~~~~~~CP~Cr~~~~~ 101 (152)
.++.+...|.. ..+..++..++...|.||.+.+.-. ..+||+|..|-.|-.+ .|.....|++||..+..
T Consensus 39 kKNnlsaEPnl-ttsSaddtDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 39 KKNNLSAEPNL-TTSSADDTDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccccccCCcc-ccccccccccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 34444444443 3333444556788899998876444 7899999999999754 34557799999987644
No 72
>KOG1002|consensus
Probab=96.65 E-value=0.00066 Score=57.66 Aligned_cols=48 Identities=21% Similarity=0.614 Sum_probs=38.1
Q ss_pred CCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC-----CCccccccccc
Q psy12455 49 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-----HRTCPMCKMDI 99 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~-----~~~CP~Cr~~~ 99 (152)
..++..|.+|.+.-.+. ....|.|.||+.|+.+++.. +-+||.|...+
T Consensus 533 nk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 34667899999986555 66779999999999988854 33899997665
No 73
>KOG1428|consensus
Probab=96.59 E-value=0.0015 Score=61.21 Aligned_cols=49 Identities=29% Similarity=0.617 Sum_probs=38.5
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----------ccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----------TCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----------~CP~Cr~~~ 99 (152)
.++.|.||+-+--..-....|-|+|.||..|....|+..- +||+|+.++
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 5677999987754445567888999999999987775421 799999877
No 74
>KOG0801|consensus
Probab=96.58 E-value=0.00082 Score=48.88 Aligned_cols=38 Identities=34% Similarity=0.634 Sum_probs=31.4
Q ss_pred cCCCCcCCCCCccccccccCccCCCcEEEecCCCcccH
Q psy12455 42 KGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHK 79 (152)
Q Consensus 42 ~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~ 79 (152)
+.+++-+..+..+|.||+|++..++.+..|||-.+||+
T Consensus 167 sYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 167 SYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 33455556667789999999999999999999999985
No 75
>KOG1571|consensus
Probab=96.51 E-value=0.0032 Score=51.07 Aligned_cols=45 Identities=24% Similarity=0.588 Sum_probs=32.4
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
....|.||++...+ ...+||||.-| |..-- +....||+||+.+..
T Consensus 304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 45669999998654 58999999866 54332 334569999998753
No 76
>KOG3039|consensus
Probab=96.43 E-value=0.0031 Score=48.86 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=45.6
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
.-+.|++|.+.+.+.-..+.| ||||+|+..|.+..+..-..||+|-.++.+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 457799999999887666555 59999999999999988889999999987765
No 77
>KOG1952|consensus
Probab=96.41 E-value=0.0014 Score=58.31 Aligned_cols=52 Identities=33% Similarity=0.670 Sum_probs=37.4
Q ss_pred cCCCCCccccccccCccCCCcEEE-ecCCCcccHhhHHHHHhCCC-------cccccccc
Q psy12455 47 EISGDGECCAICIEFYKPSDIVRI-LPCKHEYHKNCIDPWLLEHR-------TCPMCKMD 98 (152)
Q Consensus 47 ~~~~~~~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~w~~~~~-------~CP~Cr~~ 98 (152)
.+..+-++|.||.+.+.....+-- -.|.|+||..||..|..... .||.|...
T Consensus 186 ~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred HHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 345567889999999865432211 12789999999999996521 69999743
No 78
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.35 E-value=0.0056 Score=48.02 Aligned_cols=59 Identities=14% Similarity=0.333 Sum_probs=44.4
Q ss_pred CCCCccccccccCccCCC-cEEEecCCCcccHhhHHHHHhCCCcccccccccccccCcccc
Q psy12455 49 SGDGECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFVIL 108 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~~ 108 (152)
....+.|||....|.... .+++.+|||+|...+|...- ....||+|..++.....+..+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEec
Confidence 346788999999995443 45566899999999999973 355799999998766544433
No 79
>PHA02862 5L protein; Provisional
Probab=96.31 E-value=0.0033 Score=44.91 Aligned_cols=47 Identities=21% Similarity=0.528 Sum_probs=35.1
Q ss_pred ccccccccCccCCCcEEEecCC-----CcccHhhHHHHHhCC--Cccccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCK-----HEYHKNCIDPWLLEH--RTCPMCKMDILKHY 103 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~~~ 103 (152)
..|-||++.-... .-||. ...|..||.+|++.. ..|+.|+.++....
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 4599999985432 35654 468999999999764 38999999875543
No 80
>KOG4739|consensus
Probab=96.24 E-value=0.0017 Score=50.00 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=33.8
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
-|..|...-. +....++.|+|+||..|...- ....||+|+.++...
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeeee
Confidence 3777765433 667888899999999998662 223899999986443
No 81
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.18 E-value=0.0034 Score=50.76 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=38.7
Q ss_pred CccccccccCccCCC-cEEEecCCCcccHhhHHHHHhC-CCcccccccccccccC
Q psy12455 52 GECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKHYG 104 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~~ 104 (152)
++-|++|++.+...+ ...-.|||-..|..|+...-+. ++.||-||+...+...
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 334999999987654 3455679998888887654433 6799999998766543
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.13 E-value=0.0064 Score=34.64 Aligned_cols=38 Identities=24% Similarity=0.762 Sum_probs=22.7
Q ss_pred ccccccCccCCCcEEEec---CCCcccHhhHHHHHhCCC--ccccc
Q psy12455 55 CAICIEFYKPSDIVRILP---CKHEYHKNCIDPWLLEHR--TCPMC 95 (152)
Q Consensus 55 C~IC~~~~~~~~~~~~lp---C~H~fh~~Ci~~w~~~~~--~CP~C 95 (152)
|.+|.+....+ ..-+ |+-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G---~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG---QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS---EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeee---ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777776655 3333 888999999999998766 79987
No 83
>KOG1940|consensus
Probab=96.00 E-value=0.0018 Score=51.09 Aligned_cols=54 Identities=28% Similarity=0.525 Sum_probs=41.6
Q ss_pred CccccccccCccCCC-cEEEecCCCcccHhhHHHHHhCCCcccccccccccccCcc
Q psy12455 52 GECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV 106 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 106 (152)
...|+||.+.+.... .+..++|||..|..|+......+..||+|.+ +.....+.
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~~~~ 212 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMSHYF 212 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHHHHHH
Confidence 344999999876543 3466889999999999998888899999988 55544333
No 84
>PHA03096 p28-like protein; Provisional
Probab=95.93 E-value=0.0034 Score=49.88 Aligned_cols=36 Identities=39% Similarity=0.791 Sum_probs=27.8
Q ss_pred ccccccccCccCC----CcEEEec-CCCcccHhhHHHHHhC
Q psy12455 53 ECCAICIEFYKPS----DIVRILP-CKHEYHKNCIDPWLLE 88 (152)
Q Consensus 53 ~~C~IC~~~~~~~----~~~~~lp-C~H~fh~~Ci~~w~~~ 88 (152)
..|.||++..... ....+|+ |.|.||..|+..|...
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 4599999986532 2345676 9999999999999864
No 85
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.77 E-value=0.0058 Score=36.54 Aligned_cols=45 Identities=24% Similarity=0.504 Sum_probs=31.9
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
...|..|...-..+ ..+||+|+.+..|..-+ +-..||+|..++..
T Consensus 7 ~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKG---TVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccc---ccccccceeeccccChh--hccCCCCCCCcccC
Confidence 34466776654344 78999999999997653 33479999887643
No 86
>KOG3268|consensus
Probab=95.41 E-value=0.0091 Score=44.20 Aligned_cols=30 Identities=30% Similarity=0.897 Sum_probs=24.2
Q ss_pred ecCCCcccHhhHHHHHhC----C-------Ccccccccccc
Q psy12455 71 LPCKHEYHKNCIDPWLLE----H-------RTCPMCKMDIL 100 (152)
Q Consensus 71 lpC~H~fh~~Ci~~w~~~----~-------~~CP~Cr~~~~ 100 (152)
..||..||.-||..||+. . +.||+|..++.
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 459999999999999964 1 25999988764
No 87
>KOG2114|consensus
Probab=95.36 E-value=0.013 Score=52.34 Aligned_cols=43 Identities=23% Similarity=0.648 Sum_probs=34.2
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 99 (152)
...|..|--.+..| ++.-.|||.||.+|+. .....||.|+..+
T Consensus 840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 35799998888666 4666799999999998 4556899998743
No 88
>KOG4185|consensus
Probab=95.33 E-value=0.013 Score=46.57 Aligned_cols=47 Identities=38% Similarity=0.793 Sum_probs=37.1
Q ss_pred ccccccccCccCCC---cEEEecCCCcccHhhHHHHHhCCC-ccccccccc
Q psy12455 53 ECCAICIEFYKPSD---IVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDI 99 (152)
Q Consensus 53 ~~C~IC~~~~~~~~---~~~~lpC~H~fh~~Ci~~w~~~~~-~CP~Cr~~~ 99 (152)
..|-||-++|...+ ..+.+.|||.||..|+...+.... .||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 45999999997642 346677999999999987766543 799999985
No 89
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.30 E-value=0.039 Score=45.25 Aligned_cols=79 Identities=18% Similarity=0.431 Sum_probs=44.9
Q ss_pred hHHhhhhhHHHHHHhhcCCCccccCCCCcCCCCCccccccccCccCCCcE-----------------EEec--CCCcccH
Q psy12455 19 DVKQRRLCSAAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIV-----------------RILP--CKHEYHK 79 (152)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~-----------------~~lp--C~H~fh~ 79 (152)
.....+...+-++.++.-|...... ...+.+.|.-|+..-.+-+-. ...+ |...+|.
T Consensus 242 ~tl~drF~e~F~~~V~~Np~y~~~~----~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~ 317 (358)
T PF10272_consen 242 QTLSDRFVEAFKEQVEQNPRYSYPE----SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCL 317 (358)
T ss_pred CCHHHHHHHHHHHHHHhCCccccCC----CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHH
Confidence 3334445555556666555444331 122455688898864221000 0112 5567899
Q ss_pred hhHHHHHhCCC-------------ccccccccccc
Q psy12455 80 NCIDPWLLEHR-------------TCPMCKMDILK 101 (152)
Q Consensus 80 ~Ci~~w~~~~~-------------~CP~Cr~~~~~ 101 (152)
+|+.+|+..++ .||.||+.+--
T Consensus 318 ~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 318 ECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred HHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 99999995422 69999998643
No 90
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.27 E-value=0.0077 Score=34.88 Aligned_cols=33 Identities=24% Similarity=0.647 Sum_probs=23.3
Q ss_pred EecCC-CcccHhhHHHHHhCCCcccccccccccc
Q psy12455 70 ILPCK-HEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 70 ~lpC~-H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
.+.|. |..|..|+...+.....||+|..+++..
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 45575 8999999999999999999999988653
No 91
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.19 E-value=0.024 Score=41.12 Aligned_cols=33 Identities=30% Similarity=0.720 Sum_probs=22.4
Q ss_pred CCccccccccCccCCCcEEEecC------------CC-cccHhhHHHHH
Q psy12455 51 DGECCAICIEFYKPSDIVRILPC------------KH-EYHKNCIDPWL 86 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC------------~H-~fh~~Ci~~w~ 86 (152)
++..|+||||.-.+. ++|-| +. .-|..||+++-
T Consensus 1 ed~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CCccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHH
Confidence 356799999984433 55444 32 45788998876
No 92
>KOG3002|consensus
Probab=94.78 E-value=0.018 Score=46.18 Aligned_cols=44 Identities=27% Similarity=0.650 Sum_probs=35.1
Q ss_pred CCccccccccCccCCCcEEEecC--CCcccHhhHHHHHhCCCccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPC--KHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC--~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
+-.+|+||.+.+..+ +..| ||..|..|-.+ ....||.||.++..
T Consensus 47 ~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCccc----ceecCCCcEehhhhhhh---hcccCCcccccccc
Confidence 567799999999887 4456 79999999754 45679999998863
No 93
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.56 E-value=0.025 Score=39.86 Aligned_cols=49 Identities=27% Similarity=0.485 Sum_probs=38.4
Q ss_pred CCccccccccCccCCCcEEEe-c---CCCcccHhhHHHHHhC---CCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-P---CKHEYHKNCIDPWLLE---HRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-p---C~H~fh~~Ci~~w~~~---~~~CP~Cr~~~~~~ 102 (152)
.-++|.||.|...+. +.| | ||-..|..|....|+. ...||+|+.++...
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 467799999986654 333 2 9999999999998875 45899999887644
No 94
>KOG1001|consensus
Probab=94.56 E-value=0.017 Score=51.10 Aligned_cols=50 Identities=22% Similarity=0.620 Sum_probs=39.4
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC--cccccccccccccCcc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR--TCPMCKMDILKHYGFV 106 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~--~CP~Cr~~~~~~~~~~ 106 (152)
..|.||++ . +.....+|+|.||..|+...+.... .||.||..+.....+.
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 67999999 3 3448888999999999999887533 6999999887665333
No 95
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.41 E-value=0.063 Score=32.04 Aligned_cols=40 Identities=28% Similarity=0.716 Sum_probs=31.4
Q ss_pred CCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCCCcccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPM 94 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~~~CP~ 94 (152)
....|.+|-+.|.+.+.++.-| ||-.+|+.|... ...|-+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 3456999999998777777777 999999999644 455654
No 96
>KOG2817|consensus
Probab=94.28 E-value=0.037 Score=45.55 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=38.5
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC---ccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~---~CP~Cr~ 97 (152)
..+.|||=.+.-...+..+.|.|||+....-|.+..+... .||+|-.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4567999888777777789999999999999999876543 6999944
No 97
>KOG4367|consensus
Probab=94.24 E-value=0.03 Score=46.91 Aligned_cols=36 Identities=31% Similarity=0.757 Sum_probs=31.0
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE 88 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~ 88 (152)
+++..|+||...|..+ .+|||+|..|..|...-+.+
T Consensus 2 eeelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 3567799999999988 99999999999998876643
No 98
>KOG2932|consensus
Probab=93.88 E-value=0.022 Score=45.61 Aligned_cols=29 Identities=31% Similarity=0.944 Sum_probs=22.7
Q ss_pred EEecCCCcccHhhHHHHHhCCCccccccccc
Q psy12455 69 RILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99 (152)
Q Consensus 69 ~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 99 (152)
+.+||.|+||.+|-.. ..-+.||.|-..+
T Consensus 105 RmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred cccccchhhhhhhhhc--CccccCcCcccHH
Confidence 6789999999999754 4455899886655
No 99
>KOG2034|consensus
Probab=93.25 E-value=0.052 Score=48.87 Aligned_cols=36 Identities=19% Similarity=0.529 Sum_probs=29.0
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHH
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL 86 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~ 86 (152)
+....|.+|...+.. +....-||||.||+.||..-.
T Consensus 815 ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence 356779999888764 356778899999999998766
No 100
>KOG0309|consensus
Probab=92.56 E-value=0.06 Score=47.87 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=22.6
Q ss_pred EEecCCCcccHhhHHHHHhCCCcccc
Q psy12455 69 RILPCKHEYHKNCIDPWLLEHRTCPM 94 (152)
Q Consensus 69 ~~lpC~H~fh~~Ci~~w~~~~~~CP~ 94 (152)
....|+|+.|.+|...||.....||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 34559999999999999999999883
No 101
>KOG0298|consensus
Probab=92.35 E-value=0.034 Score=51.83 Aligned_cols=46 Identities=30% Similarity=0.728 Sum_probs=38.3
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMD 98 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~ 98 (152)
+...|.||++.+.... .+.-|||.+|..|+..|+..+..||.|+..
T Consensus 1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 4557999999987321 556699999999999999999999999743
No 102
>KOG1100|consensus
Probab=92.33 E-value=0.072 Score=40.53 Aligned_cols=40 Identities=33% Similarity=0.721 Sum_probs=30.1
Q ss_pred ccccccCccCCCcEEEecCCC-cccHhhHHHHHhCCCccccccccccc
Q psy12455 55 CAICIEFYKPSDIVRILPCKH-EYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 55 C~IC~~~~~~~~~~~~lpC~H-~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
|-.|.+. ...+..+||.| .+|..|-.. ...||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 8888776 55678999999 689888543 3469999876543
No 103
>KOG3800|consensus
Probab=92.05 E-value=0.14 Score=40.57 Aligned_cols=49 Identities=27% Similarity=0.561 Sum_probs=34.7
Q ss_pred cccccccC-ccCCC-cEEEecCCCcccHhhHHHHHhCCC-cccccccccccc
Q psy12455 54 CCAICIEF-YKPSD-IVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKH 102 (152)
Q Consensus 54 ~C~IC~~~-~~~~~-~~~~lpC~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 102 (152)
.|++|-.. |..+. .+.+-+|+|..|.+|....+..+. .||.|...+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 38888654 33333 333346999999999999887655 899997766443
No 104
>KOG0827|consensus
Probab=91.77 E-value=0.0075 Score=49.53 Aligned_cols=50 Identities=30% Similarity=0.676 Sum_probs=40.8
Q ss_pred ccccccccCccCC-CcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 53 ECCAICIEFYKPS-DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 53 ~~C~IC~~~~~~~-~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
..|.||.+.+... +.+..+-|||.+|..||..|+.....||.|+..+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 4599999888654 3445566999999999999999988999999988544
No 105
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.11 E-value=0.07 Score=31.28 Aligned_cols=42 Identities=24% Similarity=0.551 Sum_probs=20.2
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhCC---C--cccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH---R--TCPMCKMD 98 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~---~--~CP~Cr~~ 98 (152)
.|+|....+..+ ++...|.|.-|.+ +..|+... . .||+|.++
T Consensus 4 ~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 588888887665 3445599986544 45566432 2 69999763
No 106
>KOG1609|consensus
Probab=90.62 E-value=0.16 Score=40.32 Aligned_cols=51 Identities=31% Similarity=0.712 Sum_probs=36.1
Q ss_pred CCccccccccCccCCCc-EEEecCC-----CcccHhhHHHHHhC--CCccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDI-VRILPCK-----HEYHKNCIDPWLLE--HRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~-~~~lpC~-----H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 101 (152)
++..|-||.++...... ....||. ...|..|+..|+.. +..|.+|......
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 34679999997654321 3566754 46799999999985 4479999775543
No 107
>KOG1812|consensus
Probab=90.37 E-value=0.097 Score=43.43 Aligned_cols=37 Identities=27% Similarity=0.642 Sum_probs=27.0
Q ss_pred CccccccccCccCC-CcEEEecCCCcccHhhHHHHHhC
Q psy12455 52 GECCAICIEFYKPS-DIVRILPCKHEYHKNCIDPWLLE 88 (152)
Q Consensus 52 ~~~C~IC~~~~~~~-~~~~~lpC~H~fh~~Ci~~w~~~ 88 (152)
...|.||+...... .......|+|.||..|+.+.+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 56799999444333 33334559999999999998874
No 108
>KOG3899|consensus
Probab=89.73 E-value=0.19 Score=40.10 Aligned_cols=31 Identities=16% Similarity=0.652 Sum_probs=24.0
Q ss_pred CCCcccHhhHHHHHhC-------------CCccccccccccccc
Q psy12455 73 CKHEYHKNCIDPWLLE-------------HRTCPMCKMDILKHY 103 (152)
Q Consensus 73 C~H~fh~~Ci~~w~~~-------------~~~CP~Cr~~~~~~~ 103 (152)
|...+|.+||.+|+.. +-+||.||+.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 6678999999999942 337999999876543
No 109
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=89.20 E-value=0.37 Score=43.47 Aligned_cols=54 Identities=24% Similarity=0.598 Sum_probs=37.9
Q ss_pred CCCCCccccccccCccCCCcEEEecCC-----CcccHhhHHHHHhCCC--cccccccccccc
Q psy12455 48 ISGDGECCAICIEFYKPSDIVRILPCK-----HEYHKNCIDPWLLEHR--TCPMCKMDILKH 102 (152)
Q Consensus 48 ~~~~~~~C~IC~~~~~~~~~~~~lpC~-----H~fh~~Ci~~w~~~~~--~CP~Cr~~~~~~ 102 (152)
..++...|.||..+=..+++. .-||+ ...|..|+.+|+.-.+ .|-+|+.++.-.
T Consensus 8 mN~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 8 MNEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CCccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 445667899998875544333 33554 3589999999998644 799998877443
No 110
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=88.11 E-value=0.94 Score=27.16 Aligned_cols=47 Identities=19% Similarity=0.534 Sum_probs=33.6
Q ss_pred cccccccCccCCC-cEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 54 CCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 54 ~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
.|-.|-.++.... ..++-.=...||..|....| +..||.|...+..+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 3778888886654 23333334589999999876 67899998877654
No 111
>KOG3053|consensus
Probab=87.02 E-value=0.29 Score=38.33 Aligned_cols=52 Identities=25% Similarity=0.774 Sum_probs=35.0
Q ss_pred CCccccccccCccCCCcE-EEecCC-----CcccHhhHHHHHhCCC--------cccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIV-RILPCK-----HEYHKNCIDPWLLEHR--------TCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~-~~lpC~-----H~fh~~Ci~~w~~~~~--------~CP~Cr~~~~~~ 102 (152)
.+..|=||+..=++.... -.-||. |-.|..||..|+..+. +||-|+......
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 566799998864433111 123553 6799999999996432 699998876443
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.67 E-value=0.48 Score=36.87 Aligned_cols=49 Identities=27% Similarity=0.632 Sum_probs=35.8
Q ss_pred CCccccccccC-ccCCC-cEEEec-CCCcccHhhHHHHHhCCC-ccc--cccccc
Q psy12455 51 DGECCAICIEF-YKPSD-IVRILP-CKHEYHKNCIDPWLLEHR-TCP--MCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~-~~~~~-~~~~lp-C~H~fh~~Ci~~w~~~~~-~CP--~Cr~~~ 99 (152)
.+..|+||..+ |-.|+ .+.+-| |-|..|.+|..+.|...+ .|| -|..-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 45579999865 33444 344456 999999999999998766 799 675544
No 113
>KOG0824|consensus
Probab=86.65 E-value=0.68 Score=37.11 Aligned_cols=52 Identities=23% Similarity=0.499 Sum_probs=40.1
Q ss_pred CCcCCCCCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCCCccccccccc
Q psy12455 45 DKEISGDGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDI 99 (152)
Q Consensus 45 ~~~~~~~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 99 (152)
+.........|-||...+..+ .... |.|.|+..|...|......||.|+...
T Consensus 98 dA~~~~~~~~~~~~~g~l~vp---t~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 98 DAGFQQDHDICYICYGKLTVP---TRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred hccccCCccceeeeeeeEEec---ccccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 333444667799999887666 3333 999999999999999988899887654
No 114
>KOG1815|consensus
Probab=84.77 E-value=0.58 Score=39.49 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=30.0
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE 88 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~ 88 (152)
.....|.||.+.+.. .+..+.|+|.||..|+...+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 356789999998765 4466789999999999998854
No 115
>KOG3113|consensus
Probab=83.93 E-value=1.2 Score=34.85 Aligned_cols=57 Identities=9% Similarity=0.152 Sum_probs=40.5
Q ss_pred CCccccccccCccCCC-cEEEecCCCcccHhhHHHHHhCCCcccccccccccccCccccC
Q psy12455 51 DGECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFVILA 109 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~~~~ 109 (152)
..+.|+|---+|...- .++.++|||+|-...+.+. ....|++|.+.+.....+..+.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEeeCC
Confidence 4567998766664332 4566789999999888774 3568999999887665544443
No 116
>KOG4362|consensus
Probab=83.67 E-value=0.26 Score=43.53 Aligned_cols=48 Identities=33% Similarity=0.732 Sum_probs=37.7
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC---cccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~---~CP~Cr~~~~~~ 102 (152)
..+|+||...+..+ ..+.|-|.|+..|+..-|.... .||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 34599999998887 7788999999999977665533 799998665443
No 117
>KOG1812|consensus
Probab=83.03 E-value=0.6 Score=38.76 Aligned_cols=44 Identities=20% Similarity=0.443 Sum_probs=30.5
Q ss_pred CccccccccCccCCCcEEE--ecCCCcccHhhHHHHHhCCCccccc
Q psy12455 52 GECCAICIEFYKPSDIVRI--LPCKHEYHKNCIDPWLLEHRTCPMC 95 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~--lpC~H~fh~~Ci~~w~~~~~~CP~C 95 (152)
-..|+.|.-.+.-...... -.|||.||+.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 4458888766544433222 2399999999999998887766554
No 118
>KOG3039|consensus
Probab=82.73 E-value=1.2 Score=34.85 Aligned_cols=34 Identities=18% Similarity=0.440 Sum_probs=30.2
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHh
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL 87 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~ 87 (152)
+-..|.+|+..+.+| ++.|=||+|++.||.+++.
T Consensus 42 ~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 456799999999999 8999999999999999883
No 119
>KOG3005|consensus
Probab=81.26 E-value=0.77 Score=36.18 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=33.5
Q ss_pred ccccccccCccCCC-cEEEec---CCCcccHhhHHHHHhC---------CCcccccccccc
Q psy12455 53 ECCAICIEFYKPSD-IVRILP---CKHEYHKNCIDPWLLE---------HRTCPMCKMDIL 100 (152)
Q Consensus 53 ~~C~IC~~~~~~~~-~~~~lp---C~H~fh~~Ci~~w~~~---------~~~CP~Cr~~~~ 100 (152)
.+|.+|.+.+...+ ....-+ |.-++|..||...+.. .+.||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 57999999984333 333222 8899999999984432 236999988553
No 120
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=81.00 E-value=1.2 Score=33.60 Aligned_cols=41 Identities=37% Similarity=0.839 Sum_probs=26.7
Q ss_pred CCccccccccC--ccC--CCcEEEec-CCCcccHhhHHHHHhCCCcccccc
Q psy12455 51 DGECCAICIEF--YKP--SDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCK 96 (152)
Q Consensus 51 ~~~~C~IC~~~--~~~--~~~~~~lp-C~H~fh~~Ci~~w~~~~~~CP~Cr 96 (152)
.++.|.+|... +.+ .+.+..-+ |+.+||..|+. +..||.|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 45678888752 111 11334444 99999999975 26799994
No 121
>KOG1829|consensus
Probab=80.87 E-value=0.87 Score=39.73 Aligned_cols=44 Identities=25% Similarity=0.709 Sum_probs=26.7
Q ss_pred CCccccccccC-----ccCCCcEEEecCCCcccHhhHHHHHhCCCccccccc
Q psy12455 51 DGECCAICIEF-----YKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~-----~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~ 97 (152)
..+.|.+|... |......+..-|+++||..|+.. ....||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 45668888332 21111223344999999999755 3335999943
No 122
>KOG0802|consensus
Probab=80.57 E-value=0.79 Score=39.68 Aligned_cols=53 Identities=28% Similarity=0.733 Sum_probs=41.5
Q ss_pred cCCCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccccCcc
Q psy12455 47 EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV 106 (152)
Q Consensus 47 ~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 106 (152)
++.+....|.||++.+ ..+..+|. |..|+..|+..+..||.|+..+.......
T Consensus 474 ~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~ 526 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLS 526 (543)
T ss_pred hhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccC
Confidence 4445677899999987 22566787 89999999999999999998887665433
No 123
>KOG0269|consensus
Probab=80.52 E-value=1.4 Score=39.49 Aligned_cols=38 Identities=21% Similarity=0.619 Sum_probs=27.9
Q ss_pred cccccccCccCCCcEEEec--CCCcccHhhHHHHHhCCCcccc
Q psy12455 54 CCAICIEFYKPSDIVRILP--CKHEYHKNCIDPWLLEHRTCPM 94 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lp--C~H~fh~~Ci~~w~~~~~~CP~ 94 (152)
.|.+|...+.. +...+ |+|.-|..|+..|+....-||.
T Consensus 781 ~CtVC~~vi~G---~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRG---VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceeee---eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 47777655431 23333 9999999999999998887766
No 124
>KOG3579|consensus
Probab=80.33 E-value=0.77 Score=36.59 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=28.7
Q ss_pred CCccccccccCccCCCcEEEec--CCCcccHhhHHHHHhCCC
Q psy12455 51 DGECCAICIEFYKPSDIVRILP--CKHEYHKNCIDPWLLEHR 90 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp--C~H~fh~~Ci~~w~~~~~ 90 (152)
....|.+|.|.+++. .++..| =.|.||..|-++.++.+.
T Consensus 267 apLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccC-ceeecCCCcccceecccCHHHHHhhc
Confidence 347799999999875 223333 369999999999887643
No 125
>KOG2807|consensus
Probab=80.10 E-value=2 Score=34.92 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=32.3
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~ 97 (152)
....|-.|.+........+.-.|.+.||.+|=.-.=+.--.||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 44459999877766555555559999999995433233347999963
No 126
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=79.03 E-value=1.6 Score=35.37 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=33.8
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC---ccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~---~CP~Cr~ 97 (152)
..+.|++--+.-...+..+.+.|||+.-...+...-+... .||+|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 3567998666655555668899999999998877554322 6999943
No 127
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=76.16 E-value=1.6 Score=27.09 Aligned_cols=12 Identities=25% Similarity=0.991 Sum_probs=8.8
Q ss_pred cccHhhHHHHHh
Q psy12455 76 EYHKNCIDPWLL 87 (152)
Q Consensus 76 ~fh~~Ci~~w~~ 87 (152)
-||+.||..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 128
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=76.06 E-value=1.3 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=11.7
Q ss_pred cccccccCccCCCcEEEec-CCCcc
Q psy12455 54 CCAICIEFYKPSDIVRILP-CKHEY 77 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lp-C~H~f 77 (152)
.|+-|...+.. ....-| |||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 36667666532 223444 66665
No 129
>KOG2066|consensus
Probab=75.84 E-value=1.4 Score=39.53 Aligned_cols=43 Identities=37% Similarity=0.684 Sum_probs=30.1
Q ss_pred CccccccccCccCC----CcEEEecCCCcccHhhHHHHHhCCCccccc
Q psy12455 52 GECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMC 95 (152)
Q Consensus 52 ~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~C 95 (152)
+..|.-|++..... ..+..+-|+|.||..|+..-..++. |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 34799998876432 3456778999999999976655444 5444
No 130
>KOG4718|consensus
Probab=75.74 E-value=1.4 Score=33.64 Aligned_cols=46 Identities=26% Similarity=0.639 Sum_probs=35.2
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 99 (152)
-..|.+|....-.+ ++.-.|+-.+|..|+..++.....||.|..-+
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 34699998876544 13344778899999999999999999996544
No 131
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=75.01 E-value=3.8 Score=26.28 Aligned_cols=53 Identities=21% Similarity=0.471 Sum_probs=20.0
Q ss_pred CCccccccccCccC---CCcEE-EecCCCcccHhhHHHHH-hCCCccccccccccccc
Q psy12455 51 DGECCAICIEFYKP---SDIVR-ILPCKHEYHKNCIDPWL-LEHRTCPMCKMDILKHY 103 (152)
Q Consensus 51 ~~~~C~IC~~~~~~---~~~~~-~lpC~H~fh~~Ci~~w~-~~~~~CP~Cr~~~~~~~ 103 (152)
....|.||-+.+.. ++..+ ..-|+--.|+.|++-=. ..++.||-|+.......
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 34569999988743 33222 22388889999985433 34678999997775443
No 132
>KOG3161|consensus
Probab=74.14 E-value=0.97 Score=39.85 Aligned_cols=40 Identities=23% Similarity=0.574 Sum_probs=28.8
Q ss_pred CccccccccCccCCC-cEEEecCCCcccHhhHHHHHhCCCccc
Q psy12455 52 GECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRTCP 93 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~w~~~~~~CP 93 (152)
...|.||+..|.... ..+.+-|||+.|..|+...+ +.+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 456999987776542 22455699999999998754 45787
No 133
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.53 E-value=3.9 Score=25.89 Aligned_cols=47 Identities=21% Similarity=0.500 Sum_probs=32.1
Q ss_pred ccccccCccCCCcE-EEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 55 CAICIEFYKPSDIV-RILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 55 C~IC~~~~~~~~~~-~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
|--|-.++.+...- .+..-.|.||..|.+.. -++.||.|...++..+
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~--l~g~CPnCGGelv~RP 55 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENR--LHGLCPNCGGELVARP 55 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHh--hcCcCCCCCchhhcCc
Confidence 66677777554322 33235689999998764 3578999988886554
No 134
>KOG2068|consensus
Probab=72.26 E-value=2.8 Score=34.05 Aligned_cols=47 Identities=23% Similarity=0.426 Sum_probs=34.8
Q ss_pred ccccccccCccCCC-cEEEecCCCcccHhhHHHHHhCCCccccccccc
Q psy12455 53 ECCAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99 (152)
Q Consensus 53 ~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 99 (152)
..|+||.+.+...+ ...-.||++..|..|+..-...+.+||.||.+.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcc
Confidence 56999999874322 223344888888888888878888999999544
No 135
>KOG0825|consensus
Probab=71.00 E-value=2.5 Score=38.27 Aligned_cols=49 Identities=14% Similarity=0.269 Sum_probs=33.9
Q ss_pred CCccccccccCccCCC-cEEEec---CCCcccHhhHHHHHhCC------Cccccccccc
Q psy12455 51 DGECCAICIEFYKPSD-IVRILP---CKHEYHKNCIDPWLLEH------RTCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~-~~~~lp---C~H~fh~~Ci~~w~~~~------~~CP~Cr~~~ 99 (152)
+...|.+|.-.+..+. ..-.+| |+|.||..||..|..+. -.|++|..-+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3456778877776632 223445 99999999999999642 2578886655
No 136
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=67.41 E-value=3.1 Score=23.72 Aligned_cols=43 Identities=26% Similarity=0.692 Sum_probs=26.4
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHh------CCCcccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL------EHRTCPMCK 96 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~------~~~~CP~Cr 96 (152)
.|.||.......+.+.--.|+..||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3788988443333233334899999999854332 123687775
No 137
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.00 E-value=9.9 Score=26.12 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=30.6
Q ss_pred ccccccccCccCCC----------cEE-EecCCCcccHhhHHHHHhCCCcccccc
Q psy12455 53 ECCAICIEFYKPSD----------IVR-ILPCKHEYHKNCIDPWLLEHRTCPMCK 96 (152)
Q Consensus 53 ~~C~IC~~~~~~~~----------~~~-~lpC~H~fh~~Ci~~w~~~~~~CP~Cr 96 (152)
..|--|...|..+. ... -..|++.||.+|=.-+-+.--.||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45999999885421 112 234999999999766666656799885
No 138
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=62.15 E-value=3.6 Score=25.12 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=16.7
Q ss_pred CccccccccCccCCCcEEEe-cCCCcccHhhHHHHH
Q psy12455 52 GECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWL 86 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~ 86 (152)
...|.+|...|..-..-..- .||++||..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 45699999998653322333 399999999875443
No 140
>KOG3842|consensus
Probab=61.55 E-value=8.1 Score=31.44 Aligned_cols=55 Identities=20% Similarity=0.536 Sum_probs=34.9
Q ss_pred CCccccccccCcc---------------CCC-cEEEecCCCcccHhhHHHHHhC---------CCcccccccccccccCc
Q psy12455 51 DGECCAICIEFYK---------------PSD-IVRILPCKHEYHKNCIDPWLLE---------HRTCPMCKMDILKHYGF 105 (152)
Q Consensus 51 ~~~~C~IC~~~~~---------------~~~-~~~~lpC~H~fh~~Ci~~w~~~---------~~~CP~Cr~~~~~~~~~ 105 (152)
.+.+|++|+..-. .+- .-...||||+--..-..-|.+. +..||.|-..+......
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~~~ 419 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQGY 419 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCCce
Confidence 4667999987521 000 0134689998777777677643 22699998877665543
No 141
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=60.20 E-value=9.4 Score=19.78 Aligned_cols=36 Identities=19% Similarity=0.553 Sum_probs=22.1
Q ss_pred ccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccc
Q psy12455 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99 (152)
Q Consensus 55 C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 99 (152)
|..|.+.+...+. ....=+..||..|+ .|..|+.+|
T Consensus 2 C~~C~~~i~~~~~-~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGEL-VLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcE-EEEeCCccccccCC--------CCcccCCcC
Confidence 7778777665422 22224677887774 577776655
No 142
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=60.15 E-value=6.5 Score=23.12 Aligned_cols=40 Identities=23% Similarity=0.614 Sum_probs=18.3
Q ss_pred ccccccCccCCC------cEEEec-CCCcccHhhHHHHHhCC--Ccccccc
Q psy12455 55 CAICIEFYKPSD------IVRILP-CKHEYHKNCIDPWLLEH--RTCPMCK 96 (152)
Q Consensus 55 C~IC~~~~~~~~------~~~~lp-C~H~fh~~Ci~~w~~~~--~~CP~Cr 96 (152)
|--|+..|.... ....-| |++.||.+|= .+... -.||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD--~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD--VFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHH--HTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcC--hhhhccccCCcCCC
Confidence 445666665431 233444 9999999994 33322 2788773
No 143
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=59.74 E-value=11 Score=35.32 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=34.1
Q ss_pred CccccccccCccC---CCcEEEec-CCCcccHhhHHH-HHhCCCcccccccccc
Q psy12455 52 GECCAICIEFYKP---SDIVRILP-CKHEYHKNCIDP-WLLEHRTCPMCKMDIL 100 (152)
Q Consensus 52 ~~~C~IC~~~~~~---~~~~~~lp-C~H~fh~~Ci~~-w~~~~~~CP~Cr~~~~ 100 (152)
...|.||-+++.. ++..+... |+--.|+.|.+- .-+.++.||-|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4479999998753 33333333 888899999932 2233568999998876
No 144
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=56.75 E-value=7.3 Score=26.69 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=27.7
Q ss_pred CCccccccccCccC--CCcEEEecCCCcccHhhHHHHHhCCC--ccccccc
Q psy12455 51 DGECCAICIEFYKP--SDIVRILPCKHEYHKNCIDPWLLEHR--TCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~--~~~~~~lpC~H~fh~~Ci~~w~~~~~--~CP~Cr~ 97 (152)
++..|.+|...|.. .......-|+|.+|..|-.. ..... .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 45679999887642 22334445999999999654 11122 5888854
No 145
>PLN02248 cellulose synthase-like protein
Probab=56.68 E-value=21 Score=33.82 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=28.9
Q ss_pred EEec--CCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 69 RILP--CKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 69 ~~lp--C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
-.+| |+...|++|...-++....||-|+.+....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1135)
T PLN02248 144 DLLPCECGFKICRDCYIDAVKSGGICPGCKEPYKVT 179 (1135)
T ss_pred cCCcccccchhHHhHhhhhhhcCCCCCCCccccccc
Confidence 4566 788999999999999988999999988544
No 146
>PLN02189 cellulose synthase
Probab=56.63 E-value=13 Score=34.88 Aligned_cols=50 Identities=22% Similarity=0.476 Sum_probs=34.7
Q ss_pred CccccccccCccC---CCcEEEec-CCCcccHhhHHHHH-hCCCccccccccccc
Q psy12455 52 GECCAICIEFYKP---SDIVRILP-CKHEYHKNCIDPWL-LEHRTCPMCKMDILK 101 (152)
Q Consensus 52 ~~~C~IC~~~~~~---~~~~~~lp-C~H~fh~~Ci~~w~-~~~~~CP~Cr~~~~~ 101 (152)
...|.||-+++.. ++..+... |+--.|+.|.+-=. +.++.||-|+.....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 4479999999753 33334444 88889999994322 235589999988763
No 147
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=55.94 E-value=8.3 Score=22.39 Aligned_cols=34 Identities=12% Similarity=0.302 Sum_probs=22.0
Q ss_pred ccccccccCccCCCcEE-EecCCCcccHhhHHHHH
Q psy12455 53 ECCAICIEFYKPSDIVR-ILPCKHEYHKNCIDPWL 86 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~-~lpC~H~fh~~Ci~~w~ 86 (152)
..|.+|...|..-..-. -..||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 35888887775432112 23499999999976543
No 148
>PLN02436 cellulose synthase A
Probab=55.73 E-value=13 Score=34.87 Aligned_cols=49 Identities=20% Similarity=0.459 Sum_probs=34.5
Q ss_pred CccccccccCcc---CCCcEEEec-CCCcccHhhHHHHHh-CCCcccccccccc
Q psy12455 52 GECCAICIEFYK---PSDIVRILP-CKHEYHKNCIDPWLL-EHRTCPMCKMDIL 100 (152)
Q Consensus 52 ~~~C~IC~~~~~---~~~~~~~lp-C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~ 100 (152)
...|.||-+++. +++..+... |+--.|+.|.+-=.+ .++.||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 447999999874 344444444 888899999943222 3558999998876
No 149
>PLN02400 cellulose synthase
Probab=53.90 E-value=12 Score=35.22 Aligned_cols=49 Identities=22% Similarity=0.465 Sum_probs=33.5
Q ss_pred CccccccccCccC---CCcEEEec-CCCcccHhhHHH-HHhCCCcccccccccc
Q psy12455 52 GECCAICIEFYKP---SDIVRILP-CKHEYHKNCIDP-WLLEHRTCPMCKMDIL 100 (152)
Q Consensus 52 ~~~C~IC~~~~~~---~~~~~~lp-C~H~fh~~Ci~~-w~~~~~~CP~Cr~~~~ 100 (152)
...|.||-+++.. ++..+... |+--.|+.|.+= .-+.++.||-|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 4479999998754 33333333 888899999832 1123558999998876
No 150
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=53.67 E-value=14 Score=25.02 Aligned_cols=45 Identities=20% Similarity=0.480 Sum_probs=27.8
Q ss_pred CccccccccCccCCCcEEE------ecC---CCcccHhhHHHHHhCC---------Cccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRI------LPC---KHEYHKNCIDPWLLEH---------RTCPMCKM 97 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~------lpC---~H~fh~~Ci~~w~~~~---------~~CP~Cr~ 97 (152)
...|..|...-... .+.- ..| .-.||..||..++... -.||.||.
T Consensus 7 g~~CHqCrqKt~~~-~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDF-KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCC-ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 44588887743221 1111 235 6689999998888432 26999876
No 151
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.46 E-value=7.5 Score=25.72 Aligned_cols=13 Identities=31% Similarity=0.999 Sum_probs=11.1
Q ss_pred cccHhhHHHHHhC
Q psy12455 76 EYHKNCIDPWLLE 88 (152)
Q Consensus 76 ~fh~~Ci~~w~~~ 88 (152)
-||+.||..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999953
No 152
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.15 E-value=18 Score=24.14 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=29.3
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhC
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE 88 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~ 88 (152)
...|.||-..+..++....++ .-..|+.|+.+-...
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHhc
Confidence 456999999999998888888 666899999875543
No 153
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.62 E-value=3 Score=26.24 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=21.6
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
..|+.|..++... =++.+|..|-.. +.....||-|..++..
T Consensus 2 ~~CP~C~~~L~~~-------~~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQ-------GGHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEE-------TTEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEe-------CCEEECcccccc-ceecccCCCcccHHHH
Confidence 4599998876432 266677777654 3445579999888744
No 154
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=46.32 E-value=7.9 Score=22.60 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=6.3
Q ss_pred cccccccccccc
Q psy12455 91 TCPMCKMDILKH 102 (152)
Q Consensus 91 ~CP~Cr~~~~~~ 102 (152)
.||+|..++...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999888544
No 156
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=46.27 E-value=13 Score=20.05 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=7.3
Q ss_pred cccccccCccCC
Q psy12455 54 CCAICIEFYKPS 65 (152)
Q Consensus 54 ~C~IC~~~~~~~ 65 (152)
.|+-|...|..+
T Consensus 4 ~CP~C~~~f~v~ 15 (37)
T PF13719_consen 4 TCPNCQTRFRVP 15 (37)
T ss_pred ECCCCCceEEcC
Confidence 477776666544
No 157
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=44.94 E-value=14 Score=21.21 Aligned_cols=40 Identities=20% Similarity=0.431 Sum_probs=23.0
Q ss_pred ccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 55 C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
|..|.+.+...+ ..+..-+..||..|+ .|-.|+..|....
T Consensus 1 C~~C~~~I~~~~-~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTE-IVIKAMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSS-EEEEETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcE-EEEEeCCcEEEcccc--------ccCCCCCccCCCe
Confidence 555666665432 222236677787664 6777777765443
No 158
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=42.83 E-value=3.8 Score=32.53 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=20.0
Q ss_pred CCccccccccCccCCCcEEEec-----CCCcccHhhHHHHHhCCCccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP-----CKHEYHKNCIDPWLLEHRTCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp-----C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 99 (152)
....|+||-..-... .+.. -.+.+|..|-..|-.....||.|...-
T Consensus 171 ~~g~CPvCGs~P~~s---~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLS---VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTD 221 (290)
T ss_dssp T-SS-TTT---EEEE---EEE------EEEEEETTT--EEE--TTS-TTT---S
T ss_pred cCCcCCCCCCcCceE---EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCC
Confidence 446799996652111 1111 135678888888977778999996643
No 159
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=42.38 E-value=12 Score=21.78 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=8.5
Q ss_pred CccccccccCcc
Q psy12455 52 GECCAICIEFYK 63 (152)
Q Consensus 52 ~~~C~IC~~~~~ 63 (152)
.+.|+.|.+.|.
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 456999988543
No 160
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=41.80 E-value=4.5 Score=23.94 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=14.1
Q ss_pred EEEe-cCCCcccHhhHHHH
Q psy12455 68 VRIL-PCKHEYHKNCIDPW 85 (152)
Q Consensus 68 ~~~l-pC~H~fh~~Ci~~w 85 (152)
.+.- .|++.||..|...|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3445 48999999998887
No 161
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=40.75 E-value=13 Score=19.92 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=7.2
Q ss_pred cccccccCccCC
Q psy12455 54 CCAICIEFYKPS 65 (152)
Q Consensus 54 ~C~IC~~~~~~~ 65 (152)
.|+=|...|..+
T Consensus 4 ~Cp~C~~~y~i~ 15 (36)
T PF13717_consen 4 TCPNCQAKYEID 15 (36)
T ss_pred ECCCCCCEEeCC
Confidence 466676666543
No 162
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=40.74 E-value=47 Score=31.32 Aligned_cols=51 Identities=18% Similarity=0.372 Sum_probs=35.1
Q ss_pred CCccccccccCccC---CCcEEEec-CCCcccHhhHHHHH-hCCCccccccccccc
Q psy12455 51 DGECCAICIEFYKP---SDIVRILP-CKHEYHKNCIDPWL-LEHRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~---~~~~~~lp-C~H~fh~~Ci~~w~-~~~~~CP~Cr~~~~~ 101 (152)
....|.||-+++.. ++..+... |+--.|+.|.+-=. +.++.||.|+.....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 45679999998753 33333333 88889999994322 235589999988763
No 163
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=40.61 E-value=21 Score=27.77 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=17.4
Q ss_pred ccccccccCccCCCcEEEecCCCcc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEY 77 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~f 77 (152)
+.||+|...+.........+.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 5699999998654443444467887
No 164
>KOG1815|consensus
Probab=40.31 E-value=8.4 Score=32.54 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=25.8
Q ss_pred cccccccCccCCCcE-----EEecCCCcccHhhHHHHHhCC
Q psy12455 54 CCAICIEFYKPSDIV-----RILPCKHEYHKNCIDPWLLEH 89 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~-----~~lpC~H~fh~~Ci~~w~~~~ 89 (152)
.|+.|.......... ...+|.|.||..|+..|-...
T Consensus 228 ~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 228 ECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred cCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 399998887655421 122499999999988887653
No 165
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=40.26 E-value=13 Score=22.50 Aligned_cols=31 Identities=23% Similarity=0.753 Sum_probs=19.4
Q ss_pred EEEecCCCcccHhhHHHHHhCC------Ccccccccccccc
Q psy12455 68 VRILPCKHEYHKNCIDPWLLEH------RTCPMCKMDILKH 102 (152)
Q Consensus 68 ~~~lpC~H~fh~~Ci~~w~~~~------~~CP~Cr~~~~~~ 102 (152)
+.++.|.---|. .|++.+ ..||+|..++...
T Consensus 16 t~VW~Ct~e~C~----gWmR~nFs~~~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 16 TKVWECTSEDCN----GWMRDNFSFEEEPVCPLCKSPMVSG 52 (59)
T ss_pred eeeEEeCCCCCC----cccccccccCCCccCCCcCCccccc
Confidence 455666653332 476543 4799999888654
No 166
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=39.27 E-value=30 Score=22.69 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=29.2
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
.-..|.-|...+.--+ .+| +..|+..++.|..|++++...
T Consensus 32 ~rS~C~~C~~~L~~~~---lIP---------i~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 32 PRSHCPHCGHPLSWWD---LIP---------ILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred CCCcCcCCCCcCcccc---cch---------HHHHHHhCCCCcccCCCCChH
Confidence 3456888888776552 333 568999999999999988543
No 167
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=39.04 E-value=29 Score=23.38 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=25.7
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHh
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL 87 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~ 87 (152)
.|.||-..+..++....++= -..|+.|+.+-..
T Consensus 4 kC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK-GPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeeecceEEEecC-CcEeHHHHHHHHh
Confidence 59999999988876666654 5689999987554
No 168
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=37.30 E-value=25 Score=17.74 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=8.8
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhH
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCI 82 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci 82 (152)
.|.+|.+.........-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47778777654222233347777887774
No 169
>PLN02195 cellulose synthase A
Probab=36.28 E-value=56 Score=30.67 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=34.5
Q ss_pred CccccccccCccC---CCcEEEec-CCCcccHhhHHHHH-hCCCcccccccccccc
Q psy12455 52 GECCAICIEFYKP---SDIVRILP-CKHEYHKNCIDPWL-LEHRTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~---~~~~~~lp-C~H~fh~~Ci~~w~-~~~~~CP~Cr~~~~~~ 102 (152)
...|.||-+.+.. ++..+... |+--.|+.|.+-=. +.++.||-|+....+.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~ 61 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAE 61 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccc
Confidence 4469999997754 33333333 88889999993211 2355899999988743
No 170
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=35.47 E-value=23 Score=20.65 Aligned_cols=22 Identities=27% Similarity=0.844 Sum_probs=11.9
Q ss_pred CCCcccHhhHHHHHhCCCccccc
Q psy12455 73 CKHEYHKNCIDPWLLEHRTCPMC 95 (152)
Q Consensus 73 C~H~fh~~Ci~~w~~~~~~CP~C 95 (152)
|||.|-.. +.........||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 66766543 22222345578887
No 171
>KOG2979|consensus
Probab=35.37 E-value=21 Score=28.14 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=31.4
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC--cccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR--TCPMCKMD 98 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~--~CP~Cr~~ 98 (152)
..|+|=...+..| ++-..|||+|-++-+...+.... .||+=..+
T Consensus 177 ~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 177 NRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred ccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 4588877777666 12234999999999999887643 68865444
No 172
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=35.04 E-value=23 Score=23.35 Aligned_cols=40 Identities=25% Similarity=0.523 Sum_probs=28.3
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
...|-||-..+.. =||.||..|-. .++.|.+|...+.+..
T Consensus 44 ~~~C~~CK~~v~q--------~g~~YCq~CAY----kkGiCamCGKki~dtk 83 (90)
T PF10235_consen 44 SSKCKICKTKVHQ--------PGAKYCQTCAY----KKGICAMCGKKILDTK 83 (90)
T ss_pred Ccccccccccccc--------CCCccChhhhc----ccCcccccCCeecccc
Confidence 3459999665433 26779999953 4779999998886553
No 173
>KOG2113|consensus
Probab=33.50 E-value=38 Score=27.65 Aligned_cols=43 Identities=5% Similarity=-0.251 Sum_probs=30.1
Q ss_pred CccccccccCccCCCcEEEecCCC-cccHhhHHHHHhCCCccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKH-EYHKNCIDPWLLEHRTCPMCKMDI 99 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H-~fh~~Ci~~w~~~~~~CP~Cr~~~ 99 (152)
...|..|-+.+... ...+|+| .||..|-. +....+||.|....
T Consensus 343 ~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 343 SLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hcccccccCceeee---EeecCCcccChhhhhh--cccCCccccccccc
Confidence 45688887765443 6667999 68888876 34566899996644
No 174
>KOG1729|consensus
Probab=31.51 E-value=8 Score=30.98 Aligned_cols=10 Identities=10% Similarity=0.219 Sum_probs=4.4
Q ss_pred ccHhhHHHHH
Q psy12455 77 YHKNCIDPWL 86 (152)
Q Consensus 77 fh~~Ci~~w~ 86 (152)
.|..|+....
T Consensus 216 vC~~CF~el~ 225 (288)
T KOG1729|consen 216 VCDICFEELE 225 (288)
T ss_pred ecHHHHHHHh
Confidence 4444444443
No 175
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=31.43 E-value=29 Score=22.01 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=20.3
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHH
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDP 84 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~ 84 (152)
...|.+|............-.|...||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 345999987632221122223888999999754
No 176
>KOG3799|consensus
Probab=30.47 E-value=12 Score=26.68 Aligned_cols=42 Identities=24% Similarity=0.723 Sum_probs=23.6
Q ss_pred CCCccccccccC-ccCCCcEEEecCCCc-------ccHhhHHHHH-hCCC---cccccccc
Q psy12455 50 GDGECCAICIEF-YKPSDIVRILPCKHE-------YHKNCIDPWL-LEHR---TCPMCKMD 98 (152)
Q Consensus 50 ~~~~~C~IC~~~-~~~~~~~~~lpC~H~-------fh~~Ci~~w~-~~~~---~CP~Cr~~ 98 (152)
+++..|.||+.. |.++ |||. ||..|-.+.- +++. .|-+|+..
T Consensus 63 ~ddatC~IC~KTKFADG-------~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADG-------CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcccccc-------cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 467889999875 3333 5653 4444433222 2233 57788653
No 177
>KOG2071|consensus
Probab=29.62 E-value=31 Score=30.33 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCCccccccccCccCC----------CcEEEecCCCcccHhhHHHHH
Q psy12455 50 GDGECCAICIEFYKPS----------DIVRILPCKHEYHKNCIDPWL 86 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~----------~~~~~lpC~H~fh~~Ci~~w~ 86 (152)
+....|+||.|.|..- ...+.+--|.+||..|+..-.
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHH
Confidence 3456799999988521 012333368899999997643
No 178
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=27.95 E-value=38 Score=22.42 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=19.9
Q ss_pred CccccccccCccCCCcEEEe--cCCCcccHhhHHH
Q psy12455 52 GECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDP 84 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~ 84 (152)
...|.||.... +-.+.-. .|...||..|...
T Consensus 55 ~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSG--GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHH
Confidence 55799998873 3111111 2777999999755
No 179
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.21 E-value=34 Score=17.81 Aligned_cols=9 Identities=33% Similarity=1.040 Sum_probs=6.4
Q ss_pred Ccccccccc
Q psy12455 90 RTCPMCKMD 98 (152)
Q Consensus 90 ~~CP~Cr~~ 98 (152)
..||+|...
T Consensus 18 ~~CP~Cg~~ 26 (33)
T cd00350 18 WVCPVCGAP 26 (33)
T ss_pred CcCcCCCCc
Confidence 379999653
No 180
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=27.07 E-value=32 Score=27.88 Aligned_cols=45 Identities=18% Similarity=0.418 Sum_probs=27.8
Q ss_pred CCccccccccCccCCCcEEEe--c--CCCcccHhhHHHHHhCCCccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL--P--CKHEYHKNCIDPWLLEHRTCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l--p--C~H~fh~~Ci~~w~~~~~~CP~Cr~ 97 (152)
....|++|-..-... +..+ . =.+.+|..|-..|-.....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 456799996652111 0111 1 1245667788888777888999975
No 181
>KOG0289|consensus
Probab=26.38 E-value=77 Score=27.08 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=37.7
Q ss_pred cccccccCccCCCcEEEec-CCCcccHhhHHHHHhCCCcccccccccccccC
Q psy12455 54 CCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDILKHYG 104 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 104 (152)
.|.|=-+. ++..+.-| -||+|-+.-|++++..++.||+=..++....-
T Consensus 2 ~CaISgEv---P~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eel 50 (506)
T KOG0289|consen 2 VCAISGEV---PEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEEL 50 (506)
T ss_pred eecccCCC---CCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHe
Confidence 46666665 33336666 89999999999999999999999888866543
No 182
>PF14353 CpXC: CpXC protein
Probab=26.08 E-value=66 Score=21.98 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=22.9
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhCC---Ccccccccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH---RTCPMCKMDILKH 102 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~---~~CP~Cr~~~~~~ 102 (152)
.|+-|...+... ....-.-.....-..+.+... .+||.|.....-.
T Consensus 3 tCP~C~~~~~~~---v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 3 TCPHCGHEFEFE---VWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred CCCCCCCeeEEE---EEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 477777766433 111112222333334444332 2799998766433
No 183
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=25.99 E-value=7.1 Score=22.98 Aligned_cols=32 Identities=28% Similarity=0.674 Sum_probs=16.8
Q ss_pred cccc--cccCccCCCc--E--EEec-CCCcccHhhHHHH
Q psy12455 54 CCAI--CIEFYKPSDI--V--RILP-CKHEYHKNCIDPW 85 (152)
Q Consensus 54 ~C~I--C~~~~~~~~~--~--~~lp-C~H~fh~~Ci~~w 85 (152)
-|+- |-..+..... . +.-+ |++.||..|...|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 5766 7666543321 1 3345 9999999887766
No 184
>KOG2231|consensus
Probab=25.83 E-value=52 Score=29.54 Aligned_cols=46 Identities=26% Similarity=0.546 Sum_probs=32.9
Q ss_pred cccccccCccCCCcEEEecCCC-cccHhhHHHHHhC------CCcccccccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKH-EYHKNCIDPWLLE------HRTCPMCKMDILKH 102 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H-~fh~~Ci~~w~~~------~~~CP~Cr~~~~~~ 102 (152)
.|.||-..+.-. ..-.||| ..|..|..+.... ...||+||..+...
T Consensus 2 ~c~ic~~s~~~~---~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDFV---GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCcccc---ccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 489997775433 5566999 8999999876632 22579998876544
No 185
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.71 E-value=43 Score=23.73 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=14.3
Q ss_pred cccccCccCCCcEEEecCCCcccHh
Q psy12455 56 AICIEFYKPSDIVRILPCKHEYHKN 80 (152)
Q Consensus 56 ~IC~~~~~~~~~~~~lpC~H~fh~~ 80 (152)
-||... .+.+....|||.|+..
T Consensus 61 fi~qs~---~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSA---QKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecc---cccEEEEeccccccCh
Confidence 355443 3445666799999864
No 186
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=25.64 E-value=57 Score=18.42 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=22.0
Q ss_pred CCccccccccCc--cCCCcEEEecCCCcccHhhHHH
Q psy12455 51 DGECCAICIEFY--KPSDIVRILPCKHEYHKNCIDP 84 (152)
Q Consensus 51 ~~~~C~IC~~~~--~~~~~~~~lpC~H~fh~~Ci~~ 84 (152)
....|.+|.+.+ .......-.-|+-.+|..|+..
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 445699999988 2333444455999999999744
No 187
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.41 E-value=61 Score=22.32 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=15.2
Q ss_pred HHHhCCCcccccccccccccCc
Q psy12455 84 PWLLEHRTCPMCKMDILKHYGF 105 (152)
Q Consensus 84 ~w~~~~~~CP~Cr~~~~~~~~~ 105 (152)
..+.+...|+.|++++.-...+
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~l 101 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPSL 101 (114)
T ss_pred hhhchhhccCcCCCcCccCchh
Confidence 3455566899999998655433
No 188
>PRK11595 DNA utilization protein GntX; Provisional
Probab=25.21 E-value=54 Score=24.93 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=9.7
Q ss_pred ccHhhHHHHHhCCCcccccccc
Q psy12455 77 YHKNCIDPWLLEHRTCPMCKMD 98 (152)
Q Consensus 77 fh~~Ci~~w~~~~~~CP~Cr~~ 98 (152)
+|..|...|-.....|+.|..+
T Consensus 22 lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 22 ICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred ccHHHHhhCCcccCcCccCCCc
Confidence 4555554432222345555443
No 189
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=24.38 E-value=62 Score=19.67 Aligned_cols=32 Identities=16% Similarity=0.506 Sum_probs=18.7
Q ss_pred CCcEEEe--cCCCcccHhhHHHHHhCCC--ccccccc
Q psy12455 65 SDIVRIL--PCKHEYHKNCIDPWLLEHR--TCPMCKM 97 (152)
Q Consensus 65 ~~~~~~l--pC~H~fh~~Ci~~w~~~~~--~CP~Cr~ 97 (152)
.+..... |||..|--. |....+... .||.|.-
T Consensus 17 e~~~ftyPCPCGDRFeIs-LeDl~~GE~VArCPSCSL 52 (67)
T COG5216 17 EEKTFTYPCPCGDRFEIS-LEDLRNGEVVARCPSCSL 52 (67)
T ss_pred CCceEEecCCCCCEeEEE-HHHhhCCceEEEcCCceE
Confidence 3444444 488888653 455444443 6999844
No 190
>KOG1245|consensus
Probab=23.50 E-value=28 Score=33.99 Aligned_cols=49 Identities=20% Similarity=0.506 Sum_probs=36.0
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----ccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~~~ 99 (152)
....|.+|.......+.+...-|--.||..|+..-+.... .||-|+..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4567999999876643233333778999999999887643 699998766
No 191
>KOG1814|consensus
Probab=23.26 E-value=65 Score=27.24 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=26.3
Q ss_pred CCccccccccCccCCC---cEEEecCCCcccHhhHHHHH
Q psy12455 51 DGECCAICIEFYKPSD---IVRILPCKHEYHKNCIDPWL 86 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~---~~~~lpC~H~fh~~Ci~~w~ 86 (152)
....|+-|.-.+...+ ++..+.|+|.||+-|-....
T Consensus 367 N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 367 NSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred cCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 4456999988876655 45566699999998876644
No 192
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=23.09 E-value=17 Score=20.10 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=13.7
Q ss_pred ecCCCcccHhhHHHHHhCCCccccccc
Q psy12455 71 LPCKHEYHKNCIDPWLLEHRTCPMCKM 97 (152)
Q Consensus 71 lpC~H~fh~~Ci~~w~~~~~~CP~Cr~ 97 (152)
..|||.|-...-..= .....||.|..
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 347777754221110 12337999987
No 193
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=22.97 E-value=38 Score=17.09 Aligned_cols=13 Identities=31% Similarity=0.966 Sum_probs=6.4
Q ss_pred ccccccccccccc
Q psy12455 91 TCPMCKMDILKHY 103 (152)
Q Consensus 91 ~CP~Cr~~~~~~~ 103 (152)
.||.|...+....
T Consensus 1 ~CP~C~s~l~~~~ 13 (28)
T PF03119_consen 1 TCPVCGSKLVREE 13 (28)
T ss_dssp B-TTT--BEEE-C
T ss_pred CcCCCCCEeEcCC
Confidence 4899988887443
No 194
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=21.52 E-value=40 Score=22.33 Aligned_cols=19 Identities=37% Similarity=0.791 Sum_probs=14.4
Q ss_pred CCcccccccccccccCccc
Q psy12455 89 HRTCPMCKMDILKHYGFVI 107 (152)
Q Consensus 89 ~~~CP~Cr~~~~~~~~~~~ 107 (152)
-+.||.|+..+.+.+.|.+
T Consensus 76 pSRCP~CKSE~Ie~prF~i 94 (97)
T COG3357 76 PSRCPKCKSEWIEEPRFVI 94 (97)
T ss_pred cccCCcchhhcccCCceee
Confidence 3479999999887776553
No 195
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=21.38 E-value=41 Score=16.63 Aligned_cols=9 Identities=33% Similarity=1.220 Sum_probs=6.8
Q ss_pred ccccccccc
Q psy12455 91 TCPMCKMDI 99 (152)
Q Consensus 91 ~CP~Cr~~~ 99 (152)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 588887766
No 196
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=21.37 E-value=23 Score=26.20 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=13.6
Q ss_pred HhCCCccccccccccccc
Q psy12455 86 LLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 86 ~~~~~~CP~Cr~~~~~~~ 103 (152)
+.....||.|...+....
T Consensus 133 ~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 133 MEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred hhcCCcCCCCCCCCeecc
Confidence 345778999999887653
No 197
>KOG0956|consensus
Probab=21.17 E-value=97 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEecCCCcccHhhHHHHHhCCCccccccc
Q psy12455 69 RILPCKHEYHKNCIDPWLLEHRTCPMCKM 97 (152)
Q Consensus 69 ~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~ 97 (152)
+..|=|..||+.|-.+=......|-+|-.
T Consensus 42 vqVPtGpWfCrKCesqeraarvrCeLCP~ 70 (900)
T KOG0956|consen 42 VQVPTGPWFCRKCESQERAARVRCELCPH 70 (900)
T ss_pred EecCCCchhhhhhhhhhhhccceeecccC
Confidence 55677888888887654333446777744
No 198
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=20.56 E-value=34 Score=18.39 Aligned_cols=29 Identities=21% Similarity=0.505 Sum_probs=17.1
Q ss_pred cCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 72 PCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 72 pC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
.||++||..=.-. .....|..|...|...
T Consensus 6 ~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 6 KCGRIYHIEFNPP--KVEGVCDNCGGELVQR 34 (36)
T ss_dssp TTTEEEETTTB----SSTTBCTTTTEBEBEE
T ss_pred CCCCccccccCCC--CCCCccCCCCCeeEeC
Confidence 3888888521110 2244788888877654
No 199
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=20.20 E-value=67 Score=23.18 Aligned_cols=25 Identities=24% Similarity=0.715 Sum_probs=16.7
Q ss_pred CCCcccHhhHHHHHhCC-----------Ccccccccccccc
Q psy12455 73 CKHEYHKNCIDPWLLEH-----------RTCPMCKMDILKH 102 (152)
Q Consensus 73 C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~~~ 102 (152)
++|.|- .||... -+||+|...-+..
T Consensus 10 ~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K 45 (148)
T PF06676_consen 10 NGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEVSK 45 (148)
T ss_pred CCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeEee
Confidence 567774 699542 2799997766544
No 200
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.13 E-value=69 Score=24.77 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=16.0
Q ss_pred ccHhhHHHHHhCCCcccccccccc
Q psy12455 77 YHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 77 fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
-|..|-..-=+....||+|+..-.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccc
Confidence 356666554455679999987553
Done!