Query psy12455
Match_columns 152
No_of_seqs 158 out of 1713
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 19:45:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 2.3E-17 7.8E-22 108.7 4.1 77 24-101 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 4.8E-17 1.6E-21 103.3 3.9 68 33-102 6-73 (75)
3 2ect_A Ring finger protein 126 99.6 4.3E-16 1.5E-20 99.4 6.0 55 49-103 12-66 (78)
4 2ep4_A Ring finger protein 24; 99.6 5.3E-16 1.8E-20 98.0 5.9 54 50-103 13-66 (74)
5 2kiz_A E3 ubiquitin-protein li 99.6 7.9E-16 2.7E-20 95.9 5.8 54 49-102 11-64 (69)
6 1iym_A EL5; ring-H2 finger, ub 99.6 5.3E-16 1.8E-20 92.5 3.6 50 51-100 4-54 (55)
7 2ecm_A Ring finger and CHY zin 99.5 8.3E-15 2.9E-19 87.2 4.1 50 51-100 4-54 (55)
8 2djb_A Polycomb group ring fin 99.5 2.2E-14 7.6E-19 90.2 5.5 51 50-103 13-64 (72)
9 3ng2_A RNF4, snurf, ring finge 99.5 8E-15 2.7E-19 91.6 3.1 53 50-102 8-64 (71)
10 2d8t_A Dactylidin, ring finger 99.5 1.1E-14 3.8E-19 91.3 3.5 50 50-102 13-62 (71)
11 2ea6_A Ring finger protein 4; 99.5 1.2E-14 4.1E-19 90.1 3.4 51 50-100 13-67 (69)
12 2ecl_A Ring-box protein 2; RNF 99.5 2.2E-14 7.6E-19 92.4 4.6 52 51-102 14-77 (81)
13 2csy_A Zinc finger protein 183 99.5 2.9E-14 1E-18 91.5 4.6 49 49-100 12-60 (81)
14 2yur_A Retinoblastoma-binding 99.5 3.1E-14 1.1E-18 90.1 4.6 51 50-103 13-66 (74)
15 2xeu_A Ring finger protein 4; 99.5 1.4E-14 4.8E-19 88.6 2.8 52 51-102 2-57 (64)
16 1v87_A Deltex protein 2; ring- 99.5 4.8E-14 1.6E-18 96.0 5.3 51 52-102 25-95 (114)
17 2ecn_A Ring finger protein 141 99.5 3.7E-14 1.3E-18 88.5 3.8 50 50-103 13-62 (70)
18 2ysl_A Tripartite motif-contai 99.4 1.1E-13 3.7E-18 86.9 5.6 50 49-101 17-69 (73)
19 3dpl_R Ring-box protein 1; ubi 99.4 1.1E-13 3.6E-18 93.7 5.1 50 51-100 36-100 (106)
20 4ayc_A E3 ubiquitin-protein li 99.4 3.2E-14 1.1E-18 100.3 2.6 49 51-102 52-100 (138)
21 2ecy_A TNF receptor-associated 99.4 1E-13 3.5E-18 85.6 4.3 50 50-102 13-63 (66)
22 2ct2_A Tripartite motif protei 99.4 2E-13 6.8E-18 88.5 5.7 54 49-102 12-69 (88)
23 2ysj_A Tripartite motif-contai 99.4 3E-13 1E-17 82.7 6.0 44 49-95 17-63 (63)
24 3ztg_A E3 ubiquitin-protein li 99.4 1.4E-13 4.8E-18 90.2 4.8 52 48-102 9-63 (92)
25 1chc_A Equine herpes virus-1 r 99.4 6.2E-14 2.1E-18 86.9 2.7 50 50-101 3-52 (68)
26 1t1h_A Gspef-atpub14, armadill 99.4 1.8E-13 6.3E-18 87.0 4.4 49 51-102 7-56 (78)
27 2ecw_A Tripartite motif-contai 99.4 3.8E-13 1.3E-17 86.4 5.4 49 50-101 17-71 (85)
28 3lrq_A E3 ubiquitin-protein li 99.4 1.2E-13 4.1E-18 92.3 2.0 48 51-101 21-70 (100)
29 2d8s_A Cellular modulator of i 99.4 5E-13 1.7E-17 86.0 4.7 54 49-103 12-72 (80)
30 2ecv_A Tripartite motif-contai 99.4 7.9E-13 2.7E-17 84.8 5.2 49 50-101 17-71 (85)
31 2egp_A Tripartite motif-contai 99.4 1.1E-13 3.8E-18 88.0 1.1 49 50-101 10-65 (79)
32 3fl2_A E3 ubiquitin-protein li 99.4 3E-13 1E-17 93.5 3.3 48 51-101 51-99 (124)
33 2ckl_A Polycomb group ring fin 99.3 4.8E-13 1.6E-17 90.3 3.6 49 51-102 14-63 (108)
34 2y43_A E3 ubiquitin-protein li 99.3 3.4E-13 1.2E-17 89.6 2.8 48 51-101 21-69 (99)
35 2ecj_A Tripartite motif-contai 99.3 7.9E-13 2.7E-17 79.2 3.8 43 50-95 13-58 (58)
36 4ap4_A E3 ubiquitin ligase RNF 99.3 7.5E-13 2.6E-17 91.6 3.5 54 50-103 5-62 (133)
37 1g25_A CDK-activating kinase a 99.3 1.6E-12 5.5E-17 79.9 4.5 52 51-102 2-56 (65)
38 4a0k_B E3 ubiquitin-protein li 99.3 2.7E-13 9.1E-18 93.2 0.3 50 51-100 47-111 (117)
39 2kr4_A Ubiquitin conjugation f 99.3 2.5E-12 8.5E-17 83.5 4.5 49 51-102 13-61 (85)
40 3l11_A E3 ubiquitin-protein li 99.3 4.2E-13 1.4E-17 91.5 0.6 49 50-101 13-62 (115)
41 1rmd_A RAG1; V(D)J recombinati 99.3 9.9E-13 3.4E-17 89.8 2.0 49 51-102 22-71 (116)
42 1z6u_A NP95-like ring finger p 99.3 2.9E-12 1E-16 91.5 4.4 49 51-102 77-126 (150)
43 1wgm_A Ubiquitin conjugation f 99.3 6.4E-12 2.2E-16 83.7 5.5 50 50-102 20-70 (98)
44 2ckl_B Ubiquitin ligase protei 99.3 2.6E-12 8.8E-17 92.8 3.9 49 51-102 53-103 (165)
45 2ct0_A Non-SMC element 1 homol 99.3 1E-11 3.5E-16 78.6 6.0 54 47-102 10-65 (74)
46 2kre_A Ubiquitin conjugation f 99.3 6E-12 2E-16 84.2 5.1 49 50-101 27-75 (100)
47 3hct_A TNF receptor-associated 99.2 2.7E-12 9.3E-17 88.0 3.3 50 50-102 16-66 (118)
48 1jm7_A BRCA1, breast cancer ty 99.2 3.2E-12 1.1E-16 86.4 2.8 48 52-102 21-71 (112)
49 1e4u_A Transcriptional repress 99.2 1.3E-11 4.5E-16 78.9 4.8 53 50-103 9-64 (78)
50 3knv_A TNF receptor-associated 99.2 5.7E-12 2E-16 89.2 3.1 49 49-100 28-77 (141)
51 4ap4_A E3 ubiquitin ligase RNF 99.2 7.7E-12 2.7E-16 86.4 2.4 55 49-103 69-127 (133)
52 2vje_A E3 ubiquitin-protein li 99.2 8E-12 2.7E-16 76.9 2.1 49 51-102 7-58 (64)
53 2y1n_A E3 ubiquitin-protein li 99.2 2.2E-11 7.4E-16 98.8 4.7 51 52-105 332-383 (389)
54 1bor_A Transcription factor PM 99.1 9.7E-12 3.3E-16 74.4 1.2 46 51-102 5-50 (56)
55 2vje_B MDM4 protein; proto-onc 99.1 2.1E-11 7.2E-16 74.7 2.2 49 51-102 6-57 (63)
56 1jm7_B BARD1, BRCA1-associated 99.1 8.5E-12 2.9E-16 85.3 0.2 45 51-100 21-66 (117)
57 4ic3_A E3 ubiquitin-protein li 99.1 2E-11 6.8E-16 77.1 0.9 44 52-102 24-68 (74)
58 2yu4_A E3 SUMO-protein ligase 99.1 5.4E-11 1.8E-15 78.5 2.9 45 51-98 6-59 (94)
59 2c2l_A CHIP, carboxy terminus 99.0 7E-11 2.4E-15 91.0 3.0 49 51-102 207-256 (281)
60 3hcs_A TNF receptor-associated 99.0 1E-10 3.4E-15 84.8 2.8 50 50-102 16-66 (170)
61 2ea5_A Cell growth regulator w 99.0 4.3E-10 1.5E-14 69.9 4.4 51 48-105 11-62 (68)
62 2f42_A STIP1 homology and U-bo 98.9 3.2E-10 1.1E-14 83.1 2.9 49 51-102 105-154 (179)
63 2yho_A E3 ubiquitin-protein li 98.9 2.7E-10 9.4E-15 72.8 0.7 46 52-104 18-64 (79)
64 2ecg_A Baculoviral IAP repeat- 98.9 6.7E-10 2.3E-14 70.1 2.4 44 52-102 25-69 (75)
65 1wim_A KIAA0161 protein; ring 98.8 1.1E-09 3.9E-14 71.8 2.8 48 51-98 4-61 (94)
66 3k1l_B Fancl; UBC, ring, RWD, 98.8 1.2E-09 4.1E-14 87.0 1.2 53 50-102 306-374 (381)
67 3htk_C E3 SUMO-protein ligase 98.7 4.8E-09 1.7E-13 80.8 3.7 48 51-101 180-232 (267)
68 2bay_A PRE-mRNA splicing facto 98.7 4.8E-09 1.6E-13 63.8 2.8 49 52-103 3-52 (61)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.7 6.6E-09 2.3E-13 63.0 2.6 47 51-100 5-58 (60)
70 3t6p_A Baculoviral IAP repeat- 98.7 5E-09 1.7E-13 84.0 1.4 45 51-102 294-339 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 6.5E-07 2.2E-11 59.0 4.0 49 54-104 3-52 (101)
72 3nw0_A Non-structural maintena 98.1 3E-06 1E-10 64.6 5.4 49 51-102 179-230 (238)
73 2ko5_A Ring finger protein Z; 96.6 0.0049 1.7E-07 40.0 5.5 51 51-106 27-78 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0033 1.1E-07 40.9 3.2 36 51-86 2-37 (101)
75 1wil_A KIAA1045 protein; ring 95.8 0.0086 2.9E-07 38.1 3.3 32 50-85 13-47 (89)
76 2lri_C Autoimmune regulator; Z 95.1 0.02 6.9E-07 34.7 3.3 46 50-98 10-59 (66)
77 3m62_A Ubiquitin conjugation f 93.1 0.07 2.4E-06 47.7 3.9 49 51-102 890-939 (968)
78 1we9_A PHD finger family prote 88.9 0.12 4.2E-06 30.6 0.9 47 51-97 5-57 (64)
79 2l5u_A Chromodomain-helicase-D 88.5 0.28 9.6E-06 28.9 2.3 44 51-97 10-57 (61)
80 2l43_A N-teminal domain from h 88.5 0.25 8.6E-06 31.4 2.2 50 50-99 23-76 (88)
81 1fp0_A KAP-1 corepressor; PHD 86.3 0.4 1.4E-05 30.6 2.2 50 46-98 19-72 (88)
82 1f62_A Transcription factor WS 86.3 0.33 1.1E-05 27.3 1.7 44 54-97 2-49 (51)
83 3o36_A Transcription intermedi 86.1 0.16 5.4E-06 36.6 0.2 46 51-99 3-52 (184)
84 2yql_A PHD finger protein 21A; 85.9 0.12 4.1E-06 30.0 -0.4 45 50-97 7-55 (56)
85 1mm2_A MI2-beta; PHD, zinc fin 85.4 0.15 5.1E-06 30.1 -0.2 46 51-99 8-57 (61)
86 2k16_A Transcription initiatio 85.3 0.22 7.6E-06 30.4 0.6 49 51-100 17-70 (75)
87 2puy_A PHD finger protein 21A; 84.1 0.14 4.9E-06 30.0 -0.7 47 51-100 4-54 (60)
88 2e6r_A Jumonji/ARID domain-con 83.9 0.28 9.7E-06 31.4 0.7 48 50-98 14-66 (92)
89 2lv9_A Histone-lysine N-methyl 83.5 0.43 1.5E-05 30.9 1.4 46 51-97 27-75 (98)
90 2ysm_A Myeloid/lymphoid or mix 83.1 0.35 1.2E-05 31.8 0.9 37 51-87 6-42 (111)
91 2ku3_A Bromodomain-containing 82.8 0.57 2E-05 28.5 1.7 47 51-97 15-65 (71)
92 3u5n_A E3 ubiquitin-protein li 82.4 0.19 6.6E-06 36.8 -0.7 45 51-99 6-55 (207)
93 1wem_A Death associated transc 81.3 0.86 2.9E-05 27.8 2.1 46 52-98 16-70 (76)
94 2yt5_A Metal-response element- 81.2 0.87 3E-05 26.9 2.1 49 50-98 4-61 (66)
95 1xwh_A Autoimmune regulator; P 80.9 0.23 7.7E-06 29.8 -0.7 45 51-98 7-55 (66)
96 2cs3_A Protein C14ORF4, MY039 80.4 1.7 5.7E-05 27.3 3.2 37 51-88 14-52 (93)
97 1weo_A Cellulose synthase, cat 79.8 2.4 8.3E-05 27.0 3.8 52 51-102 15-71 (93)
98 2lbm_A Transcriptional regulat 79.3 2.2 7.6E-05 29.5 3.9 45 51-98 62-117 (142)
99 1wev_A Riken cDNA 1110020M19; 78.4 0.25 8.7E-06 31.4 -1.1 50 51-100 15-74 (88)
100 1wep_A PHF8; structural genomi 76.2 3.1 0.00011 25.5 3.6 48 51-99 11-64 (79)
101 2vpb_A Hpygo1, pygopus homolog 75.5 2.8 9.5E-05 24.9 3.1 32 51-82 7-40 (65)
102 3v43_A Histone acetyltransfera 74.7 0.86 2.9E-05 30.1 0.7 46 52-97 61-111 (112)
103 3mjh_B Early endosome antigen 73.5 0.64 2.2E-05 24.3 -0.1 15 51-65 4-18 (34)
104 1wew_A DNA-binding family prot 72.9 1.9 6.6E-05 26.4 2.0 48 51-99 15-73 (78)
105 3v43_A Histone acetyltransfera 72.9 5.9 0.0002 25.9 4.5 33 51-83 4-42 (112)
106 1y02_A CARP2, FYVE-ring finger 72.7 0.57 1.9E-05 31.6 -0.6 47 53-99 20-67 (120)
107 1wfk_A Zinc finger, FYVE domai 71.5 3.3 0.00011 26.1 2.9 51 51-101 8-66 (88)
108 1zbd_B Rabphilin-3A; G protein 71.4 1 3.5E-05 30.9 0.5 49 50-98 53-107 (134)
109 2kgg_A Histone demethylase jar 71.1 5 0.00017 22.4 3.4 43 54-96 4-52 (52)
110 2ro1_A Transcription intermedi 70.3 0.69 2.4E-05 33.4 -0.6 44 52-98 2-49 (189)
111 2o35_A Hypothetical protein DU 69.2 1.8 6.2E-05 28.1 1.3 11 77-87 43-53 (105)
112 3fyb_A Protein of unknown func 68.9 1.9 6.3E-05 28.0 1.3 11 77-87 42-52 (104)
113 3i2d_A E3 SUMO-protein ligase 68.7 3.8 0.00013 32.8 3.3 46 53-100 250-299 (371)
114 1z2q_A LM5-1; membrane protein 68.3 4 0.00014 25.3 2.8 35 51-85 20-55 (84)
115 2ri7_A Nucleosome-remodeling f 67.7 2.9 0.0001 29.3 2.3 47 51-98 7-59 (174)
116 4fo9_A E3 SUMO-protein ligase 67.6 4.3 0.00015 32.4 3.4 46 53-100 216-265 (360)
117 2yw8_A RUN and FYVE domain-con 67.3 3.8 0.00013 25.3 2.5 33 52-84 19-52 (82)
118 1vfy_A Phosphatidylinositol-3- 66.6 4.1 0.00014 24.5 2.5 31 53-83 12-43 (73)
119 1joc_A EEA1, early endosomal a 66.5 3.5 0.00012 27.7 2.3 33 52-84 69-102 (125)
120 1x4u_A Zinc finger, FYVE domai 65.4 4.5 0.00015 25.1 2.6 32 52-83 14-46 (84)
121 3t7l_A Zinc finger FYVE domain 65.3 3.6 0.00012 25.9 2.1 49 52-100 20-75 (90)
122 3zyq_A Hepatocyte growth facto 65.1 5.3 0.00018 29.5 3.3 35 51-85 163-198 (226)
123 3ql9_A Transcriptional regulat 64.6 6.7 0.00023 26.6 3.5 45 51-98 56-111 (129)
124 2xb1_A Pygopus homolog 2, B-ce 63.5 5.3 0.00018 26.0 2.7 48 52-99 3-62 (105)
125 3o70_A PHD finger protein 13; 63.2 1.9 6.6E-05 25.8 0.5 46 51-97 18-66 (68)
126 1dvp_A HRS, hepatocyte growth 63.2 3.7 0.00013 30.1 2.1 34 51-84 160-194 (220)
127 4gne_A Histone-lysine N-methyl 62.0 5.1 0.00017 26.3 2.4 46 51-102 14-66 (107)
128 2gmg_A Hypothetical protein PF 60.1 1.7 6E-05 28.5 -0.1 32 70-106 70-101 (105)
129 1weu_A Inhibitor of growth fam 59.6 5.3 0.00018 25.4 2.1 45 51-99 35-86 (91)
130 3shb_A E3 ubiquitin-protein li 58.3 1.2 3.9E-05 27.6 -1.2 43 54-97 28-76 (77)
131 2d8v_A Zinc finger FYVE domain 55.6 8 0.00027 23.2 2.3 31 51-85 7-38 (67)
132 2kwj_A Zinc finger protein DPF 55.1 1.4 4.6E-05 29.2 -1.4 47 54-100 60-110 (114)
133 3lqh_A Histone-lysine N-methyl 54.6 9.3 0.00032 27.4 3.0 47 53-99 3-64 (183)
134 1x62_A C-terminal LIM domain p 52.6 8.2 0.00028 23.1 2.1 40 51-101 14-53 (79)
135 2d8x_A Protein pinch; LIM doma 52.5 6.7 0.00023 22.8 1.7 40 52-102 5-44 (70)
136 3mpx_A FYVE, rhogef and PH dom 51.9 3 0.0001 33.3 0.0 48 52-99 375-430 (434)
137 2e6s_A E3 ubiquitin-protein li 51.8 2.8 9.7E-05 25.8 -0.2 43 54-97 28-76 (77)
138 1x64_A Alpha-actinin-2 associa 50.7 21 0.00073 21.7 3.9 41 51-102 24-64 (89)
139 2zet_C Melanophilin; complex, 50.2 6.1 0.00021 27.6 1.3 47 51-98 67-117 (153)
140 2dar_A PDZ and LIM domain prot 49.8 8.8 0.0003 23.6 2.0 41 51-102 24-64 (90)
141 1wen_A Inhibitor of growth fam 49.5 14 0.00049 22.1 2.8 45 51-99 15-66 (71)
142 1z60_A TFIIH basal transcripti 49.4 4.7 0.00016 23.6 0.5 41 54-95 17-58 (59)
143 3ask_A E3 ubiquitin-protein li 48.5 4.3 0.00015 30.3 0.3 43 54-97 176-224 (226)
144 2cor_A Pinch protein; LIM doma 48.4 11 0.00038 22.5 2.3 41 51-102 14-54 (79)
145 2d8z_A Four and A half LIM dom 48.3 14 0.00048 21.2 2.6 38 53-101 6-43 (70)
146 2jmo_A Parkin; IBR, E3 ligase, 48.1 1.3 4.5E-05 27.4 -2.2 14 72-85 55-68 (80)
147 1iml_A CRIP, cysteine rich int 48.0 5.1 0.00017 23.8 0.6 14 51-64 26-39 (76)
148 3asl_A E3 ubiquitin-protein li 47.5 2.9 0.0001 25.1 -0.6 43 54-97 20-68 (70)
149 2cu8_A Cysteine-rich protein 2 47.2 14 0.00049 21.7 2.6 42 51-102 8-49 (76)
150 2dj7_A Actin-binding LIM prote 46.8 15 0.00052 22.0 2.7 40 51-100 14-53 (80)
151 1m3v_A FLIN4, fusion of the LI 45.0 13 0.00045 24.2 2.4 51 52-102 32-82 (122)
152 1wd2_A Ariadne-1 protein homol 43.3 2.5 8.6E-05 24.7 -1.3 36 53-88 7-47 (60)
153 1nyp_A Pinch protein; LIM doma 43.0 9.2 0.00031 21.8 1.2 38 53-101 6-43 (66)
154 1zfo_A LAsp-1; LIM domain, zin 43.0 5.1 0.00017 19.9 0.0 26 54-81 5-30 (31)
155 3c6w_A P28ING5, inhibitor of g 42.2 5.2 0.00018 23.1 -0.0 43 51-97 8-57 (59)
156 2cur_A Skeletal muscle LIM-pro 42.1 12 0.00042 21.5 1.7 37 53-100 6-42 (69)
157 3a1b_A DNA (cytosine-5)-methyl 42.0 18 0.0006 25.5 2.7 34 51-88 78-114 (159)
158 2xjy_A Rhombotin-2; oncoprotei 41.5 24 0.00081 23.0 3.2 51 51-101 28-78 (131)
159 1x4l_A Skeletal muscle LIM-pro 41.1 16 0.00054 21.2 2.1 41 52-101 5-47 (72)
160 2pv0_B DNA (cytosine-5)-methyl 40.8 21 0.0007 28.7 3.2 44 51-97 92-147 (386)
161 1wyh_A SLIM 2, skeletal muscle 40.7 17 0.00058 20.9 2.2 40 53-101 6-45 (72)
162 1x68_A FHL5 protein; four-and- 40.5 14 0.00047 21.8 1.8 40 53-101 6-47 (76)
163 1x4k_A Skeletal muscle LIM-pro 39.4 18 0.00061 20.9 2.1 41 53-102 6-46 (72)
164 1wee_A PHD finger family prote 38.9 19 0.00067 21.3 2.2 46 51-97 15-65 (72)
165 1g47_A Pinch protein; LIM doma 38.3 27 0.00092 20.3 2.8 43 51-102 10-52 (77)
166 1v6g_A Actin binding LIM prote 37.8 13 0.00046 22.1 1.4 39 54-103 17-55 (81)
167 2co8_A NEDD9 interacting prote 37.4 16 0.00056 22.0 1.7 42 51-102 14-55 (82)
168 1wig_A KIAA1808 protein; LIM d 37.1 12 0.0004 22.1 1.0 36 54-100 7-42 (73)
169 1x63_A Skeletal muscle LIM-pro 37.0 21 0.00071 21.2 2.2 41 53-102 16-56 (82)
170 2cuq_A Four and A half LIM dom 35.2 16 0.00054 21.6 1.4 38 53-101 16-53 (80)
171 2a20_A Regulating synaptic mem 35.0 28 0.00096 20.3 2.3 37 49-85 6-43 (62)
172 2jvx_A NF-kappa-B essential mo 34.1 9.6 0.00033 18.8 0.2 14 90-103 4-17 (28)
173 2d8y_A Eplin protein; LIM doma 34.0 40 0.0014 20.4 3.2 41 52-102 15-55 (91)
174 3f6q_B LIM and senescent cell 32.8 27 0.00092 19.8 2.2 42 52-102 11-52 (72)
175 2vnf_A ING 4, P29ING4, inhibit 32.3 8.4 0.00029 22.3 -0.2 39 52-97 10-58 (60)
176 3o7a_A PHD finger protein 13 v 31.9 7.8 0.00027 21.6 -0.4 41 57-97 8-51 (52)
177 2dlo_A Thyroid receptor-intera 31.3 15 0.00051 21.9 0.8 38 52-100 15-52 (81)
178 1x3h_A Leupaxin; paxillin fami 30.9 21 0.00071 21.1 1.4 39 53-102 16-54 (80)
179 1a7i_A QCRP2 (LIM1); LIM domai 30.6 15 0.00051 21.9 0.7 41 52-102 7-47 (81)
180 2g6q_A Inhibitor of growth pro 30.5 13 0.00045 21.6 0.4 42 52-97 11-59 (62)
181 2egq_A FHL1 protein; LIM domai 29.8 23 0.0008 20.7 1.5 40 53-101 16-58 (77)
182 2jne_A Hypothetical protein YF 29.5 16 0.00056 23.5 0.7 41 53-101 33-73 (101)
183 2l4z_A DNA endonuclease RBBP8, 29.0 23 0.00078 23.3 1.5 39 52-100 61-99 (123)
184 2ct7_A Ring finger protein 31; 28.9 3.6 0.00012 25.6 -2.4 41 55-95 28-73 (86)
185 2rsd_A E3 SUMO-protein ligase 27.0 26 0.00088 20.5 1.3 45 51-97 9-64 (68)
186 1rut_X Flinc4, fusion protein 25.7 22 0.00075 25.0 1.0 9 91-99 99-107 (188)
187 1loi_A Cyclic 3',5'-AMP specif 23.3 4.9 0.00017 18.9 -1.9 11 76-86 6-16 (26)
188 2jrp_A Putative cytoplasmic pr 22.9 34 0.0012 21.2 1.3 12 53-64 3-14 (81)
189 1j2o_A FLIN2, fusion of rhombo 22.7 51 0.0017 21.0 2.3 38 51-89 29-67 (114)
190 2xqn_T Testin, TESS; metal-bin 22.6 86 0.0029 20.0 3.4 47 51-101 29-75 (126)
191 1wff_A Riken cDNA 2810002D23 p 22.1 1.2E+02 0.0043 18.8 3.8 26 51-79 24-51 (85)
192 2jmi_A Protein YNG1, ING1 homo 21.7 47 0.0016 20.9 1.8 41 51-97 25-75 (90)
193 2roo_A Neurotoxin MAGI-4; spid 20.8 4.6 0.00016 21.7 -2.6 16 79-94 18-33 (43)
194 2ffw_A Midline-1; B-BOX, ring 20.1 1.5E+02 0.0051 17.6 4.2 34 51-84 29-62 (78)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=108.74 Aligned_cols=77 Identities=30% Similarity=0.715 Sum_probs=64.0
Q ss_pred hhhHHHHHHhhcCCCccccCCCCcCCCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 24 RLCSAAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
...++++..++.||...+..... ..+++..|+||++.|...+.++.++|+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34557788899999887765443 234677899999999988888899999999999999999999999999998753
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.8e-17 Score=103.26 Aligned_cols=68 Identities=29% Similarity=0.853 Sum_probs=55.2
Q ss_pred hhcCCCccccCCCCcCCCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 33 LSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
+..+|...+.... ...++..|+||++.|..++.++.++|+|.||..||..|+..+..||+||+.+...
T Consensus 6 i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4556666554332 2336778999999999888889999999999999999999999999999987543
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=4.3e-16 Score=99.39 Aligned_cols=55 Identities=40% Similarity=0.976 Sum_probs=48.8
Q ss_pred CCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 49 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
..+...|+||++.|..+..+..++|+|.||..||..|+..+..||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 3467789999999998888888999999999999999999999999999886553
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-16 Score=98.01 Aligned_cols=54 Identities=41% Similarity=0.989 Sum_probs=48.3
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
.++..|+||++.|..+..+..++|+|.||..||..|+..+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 356789999999998888888999999999999999999899999999886544
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=7.9e-16 Score=95.94 Aligned_cols=54 Identities=37% Similarity=0.993 Sum_probs=47.7
Q ss_pred CCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 49 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
..+...|+||++.|..++.++.++|+|.||..||..|+..+..||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 346678999999998777788999999999999999999999999999988644
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.59 E-value=5.3e-16 Score=92.52 Aligned_cols=50 Identities=40% Similarity=1.081 Sum_probs=45.2
Q ss_pred CCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
++..|+||++.|..++.+..++ |+|.||..||..|+..+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 5667999999999877778888 9999999999999999999999998764
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.52 E-value=8.3e-15 Score=87.16 Aligned_cols=50 Identities=32% Similarity=0.720 Sum_probs=43.1
Q ss_pred CCccccccccCccCC-CcEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 51 DGECCAICIEFYKPS-DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~-~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
++..|+||++.|... +.++.++|+|.||..||..|+.....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456799999998653 35678899999999999999999899999998764
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=90.15 Aligned_cols=51 Identities=22% Similarity=0.548 Sum_probs=44.3
Q ss_pred CCCccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
++...|+||++.|..+ +.+ +|||.||..||..|+..+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 4677899999999876 666 89999999999999998889999999886543
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=8e-15 Score=91.58 Aligned_cols=53 Identities=25% Similarity=0.619 Sum_probs=45.3
Q ss_pred CCCccccccccCccCC----CcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 50 GDGECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
.++..|+||++.|..+ +.++.++|||.||..||..|+..+..||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3567899999998653 4567889999999999999999999999999988644
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=91.33 Aligned_cols=50 Identities=26% Similarity=0.548 Sum_probs=44.3
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
.+...|+||++.+..+ +.++|||.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 3667899999998776 8889999999999999999989999999988643
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=90.13 Aligned_cols=51 Identities=25% Similarity=0.636 Sum_probs=43.9
Q ss_pred CCCccccccccCccCC----CcEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 50 GDGECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
.+...|+||++.|..+ +.++.++|||.||..||..|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4677899999998753 34577899999999999999999899999999874
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=92.40 Aligned_cols=52 Identities=29% Similarity=0.795 Sum_probs=42.1
Q ss_pred CCccccccccCccC-----------CCcEEEec-CCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKP-----------SDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~-----------~~~~~~lp-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
++..|+||++.|.. .+.++.++ |+|.||..||.+|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45669999998854 23345555 999999999999999999999999987543
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.9e-14 Score=91.51 Aligned_cols=49 Identities=16% Similarity=0.398 Sum_probs=43.7
Q ss_pred CCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 49 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
.++...|+||++.|..+ +.++|||.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567899999999776 78999999999999999998889999999885
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.48 E-value=3.1e-14 Score=90.05 Aligned_cols=51 Identities=31% Similarity=0.713 Sum_probs=43.7
Q ss_pred CCCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCC--Cccccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEH--RTCPMCKMDILKHY 103 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~~~ 103 (152)
.++..|+||++.|..+ +.++ |||.||..||..|+..+ ..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 4667899999999888 8899 99999999999999865 58999999765443
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=1.4e-14 Score=88.56 Aligned_cols=52 Identities=25% Similarity=0.611 Sum_probs=44.6
Q ss_pred CCccccccccCccCC----CcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
++..|+||++.+..+ +.++.++|||.||..|+..|+..+..||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 467799999998653 4557889999999999999999989999999988654
No 16
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.47 E-value=4.8e-14 Score=95.96 Aligned_cols=51 Identities=27% Similarity=0.550 Sum_probs=41.5
Q ss_pred CccccccccCccCCC---------------cEEEecCCCcccHhhHHHHH-----hCCCcccccccccccc
Q psy12455 52 GECCAICIEFYKPSD---------------IVRILPCKHEYHKNCIDPWL-----LEHRTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~---------------~~~~lpC~H~fh~~Ci~~w~-----~~~~~CP~Cr~~~~~~ 102 (152)
+..|+||++.|..+. .+..++|+|.||..||..|+ ..+..||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 457999999996542 34478899999999999999 4466999999988654
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.7e-14 Score=88.46 Aligned_cols=50 Identities=38% Similarity=0.943 Sum_probs=43.8
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
.+...|+||++.+.. +.++|+|.||..||..|+..+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 356789999999865 77899999999999999998899999999887554
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=86.90 Aligned_cols=50 Identities=24% Similarity=0.621 Sum_probs=42.6
Q ss_pred CCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHh---CCCccccccccccc
Q psy12455 49 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL---EHRTCPMCKMDILK 101 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~---~~~~CP~Cr~~~~~ 101 (152)
..+...|+||++.|..+ +.++|||.||..||..|+. ....||+||..+..
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34677899999999876 7889999999999999997 34589999998754
No 19
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.43 E-value=1.1e-13 Score=93.71 Aligned_cols=50 Identities=28% Similarity=0.567 Sum_probs=42.8
Q ss_pred CCccccccccCccCCC---------------cEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 51 DGECCAICIEFYKPSD---------------IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~---------------~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
++..|+||++.|..+- .++.++|+|.||..||..||..+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5677999999987541 3577889999999999999999999999999864
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.43 E-value=3.2e-14 Score=100.27 Aligned_cols=49 Identities=31% Similarity=0.853 Sum_probs=43.6
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
++..|+||++.|..+ +.++|||.||..||..|+..+..||+||..+...
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 345799999999877 8899999999999999999999999999988544
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=85.58 Aligned_cols=50 Identities=22% Similarity=0.529 Sum_probs=42.7
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHh-CCCcccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL-EHRTCPMCKMDILKH 102 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 102 (152)
.+...|+||++.+..+ +.++|||.||..||..|+. ....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4678899999999877 6689999999999999995 456899999987543
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2e-13 Score=88.49 Aligned_cols=54 Identities=22% Similarity=0.570 Sum_probs=44.9
Q ss_pred CCCCccccccccCccCCCc-EEEecCCCcccHhhHHHHHhCC---Ccccccccccccc
Q psy12455 49 SGDGECCAICIEFYKPSDI-VRILPCKHEYHKNCIDPWLLEH---RTCPMCKMDILKH 102 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~w~~~~---~~CP~Cr~~~~~~ 102 (152)
..+...|+||++.|...+. .+.++|||.||..||..|+... ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3467789999999987443 5888999999999999999875 6899999987543
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3e-13 Score=82.66 Aligned_cols=44 Identities=23% Similarity=0.651 Sum_probs=38.5
Q ss_pred CCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHh---CCCccccc
Q psy12455 49 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL---EHRTCPMC 95 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~---~~~~CP~C 95 (152)
..++..|+||++.|..+ +.++|||.||..||..|+. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44678899999999887 8889999999999999998 35589998
No 24
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=90.20 Aligned_cols=52 Identities=31% Similarity=0.689 Sum_probs=44.1
Q ss_pred CCCCCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCC--Ccccccccccccc
Q psy12455 48 ISGDGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEH--RTCPMCKMDILKH 102 (152)
Q Consensus 48 ~~~~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~~ 102 (152)
...++..|+||++.|..+ +.++ |||.||..||..|+... ..||+||..+...
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc
Confidence 334678899999999888 8899 99999999999999753 4899999987433
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.41 E-value=6.2e-14 Score=86.89 Aligned_cols=50 Identities=34% Similarity=0.774 Sum_probs=43.0
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
+++..|+||++.+..+ .+.++|||.||..|+..|+..+..||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3566799999998653 4778999999999999999988999999998854
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.8e-13 Score=87.00 Aligned_cols=49 Identities=29% Similarity=0.605 Sum_probs=43.4
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC-CCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 102 (152)
+...|+||++.|..+ +.++|||.||..||..|+.. +..||+||..+...
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 577899999999887 88899999999999999987 67899999987543
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=3.8e-13 Score=86.36 Aligned_cols=49 Identities=24% Similarity=0.632 Sum_probs=43.3
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC------CCccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE------HRTCPMCKMDILK 101 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~~ 101 (152)
.+...|+||++.|..+ +.++|||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4677899999999887 78999999999999999987 5689999998754
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.37 E-value=1.2e-13 Score=92.25 Aligned_cols=48 Identities=29% Similarity=0.683 Sum_probs=42.2
Q ss_pred CCccccccccCccCCCcEEE-ecCCCcccHhhHHHHHhCC-Cccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRI-LPCKHEYHKNCIDPWLLEH-RTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 101 (152)
++..|+||++.|..+ +. ++|||.||..||..|+... ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 456799999999876 77 8899999999999999987 699999999854
No 29
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5e-13 Score=85.97 Aligned_cols=54 Identities=26% Similarity=0.688 Sum_probs=43.9
Q ss_pred CCCCccccccccCccCCCcEEEecCC-----CcccHhhHHHHHhCC--Cccccccccccccc
Q psy12455 49 SGDGECCAICIEFYKPSDIVRILPCK-----HEYHKNCIDPWLLEH--RTCPMCKMDILKHY 103 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~~~~lpC~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~~~ 103 (152)
..++..|.||++++...+.+ ++||. |.||..||.+|+..+ .+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 34667899999998765554 68996 999999999999875 48999999886543
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.9e-13 Score=84.85 Aligned_cols=49 Identities=22% Similarity=0.682 Sum_probs=43.1
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC------CCccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE------HRTCPMCKMDILK 101 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~~ 101 (152)
.+...|+||++.+..+ +.++|||.||..|+..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4677899999999877 67899999999999999987 6689999998864
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-13 Score=88.04 Aligned_cols=49 Identities=27% Similarity=0.613 Sum_probs=42.8
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC-------CCccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-------HRTCPMCKMDILK 101 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~-------~~~CP~Cr~~~~~ 101 (152)
.+...|+||++.|..+ +.++|||.||..||..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4677899999999887 67899999999999999987 4589999998864
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.35 E-value=3e-13 Score=93.45 Aligned_cols=48 Identities=25% Similarity=0.594 Sum_probs=42.4
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC-ccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~ 101 (152)
+...|+||++.|..+ +.++|||.||..||..|+.... .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456799999999877 8889999999999999998655 89999998865
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.34 E-value=4.8e-13 Score=90.30 Aligned_cols=49 Identities=24% Similarity=0.718 Sum_probs=43.3
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
++..|+||++.|..+ +.+ +|||.||..||..|+.....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 466799999999776 666 8999999999999999999999999988654
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.34 E-value=3.4e-13 Score=89.63 Aligned_cols=48 Identities=31% Similarity=0.788 Sum_probs=42.5
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
+...|+||++.|..+ +.+ +|||.||..||..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 456799999999876 666 899999999999999988899999998865
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.9e-13 Score=79.20 Aligned_cols=43 Identities=33% Similarity=0.935 Sum_probs=37.0
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHh---CCCccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL---EHRTCPMC 95 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~---~~~~CP~C 95 (152)
.+...|+||++.+..+ +.++|||.||..||..|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3667899999999887 6789999999999999965 45589988
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.31 E-value=7.5e-13 Score=91.58 Aligned_cols=54 Identities=24% Similarity=0.597 Sum_probs=46.2
Q ss_pred CCCccccccccCccCC----CcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 50 GDGECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
.+...|+||++.|..+ +.++.++|||.||..||..|+..+..||+||..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3567899999998654 45588899999999999999999999999999886544
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=1.6e-12 Score=79.90 Aligned_cols=52 Identities=23% Similarity=0.623 Sum_probs=41.5
Q ss_pred CCcccccccc-CccCCCc-EEEecCCCcccHhhHHHHHhCC-Ccccccccccccc
Q psy12455 51 DGECCAICIE-FYKPSDI-VRILPCKHEYHKNCIDPWLLEH-RTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~-~~~~~~~-~~~lpC~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~~ 102 (152)
++..|+||++ .+..+.. .+.++|||.||..||..|+... ..||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3567999999 7776643 3467899999999999998654 5799999988643
No 38
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.29 E-value=2.7e-13 Score=93.18 Aligned_cols=50 Identities=28% Similarity=0.567 Sum_probs=1.1
Q ss_pred CCccccccccCccCCC---------------cEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 51 DGECCAICIEFYKPSD---------------IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~---------------~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
++..|+||++.|..+- .++.++|+|.||..||..|+..+.+||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4567999999996521 2334579999999999999999999999999864
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.29 E-value=2.5e-12 Score=83.52 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=44.8
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
+.+.|+||++.|.++ +.++|||+|++.||..||..+.+||+||.++...
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 678899999999998 9999999999999999999888999999987543
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.28 E-value=4.2e-13 Score=91.52 Aligned_cols=49 Identities=27% Similarity=0.630 Sum_probs=43.3
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC-CCccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILK 101 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 101 (152)
.++..|+||++.|..+ +.++|||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3567899999999887 88899999999999999976 5689999998864
No 41
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.27 E-value=9.9e-13 Score=89.76 Aligned_cols=49 Identities=24% Similarity=0.519 Sum_probs=43.1
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC-CCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 102 (152)
+...|+||++.|..+ +.++|||.||..||..|+.. ...||+||..+...
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 466799999999877 77999999999999999987 67999999988654
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.27 E-value=2.9e-12 Score=91.55 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=43.3
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC-cccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 102 (152)
+...|+||++.|..+ +.++|||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 456799999999877 7899999999999999998765 899999998765
No 43
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.26 E-value=6.4e-12 Score=83.71 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=45.3
Q ss_pred CCCccccccccCccCCCcEEEecCC-CcccHhhHHHHHhCCCcccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCK-HEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~-H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
.+++.|+||++.|.+| ++++|| |+|++.||..||..+.+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 3678899999999998 899999 9999999999999888999999988643
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.26 E-value=2.6e-12 Score=92.84 Aligned_cols=49 Identities=24% Similarity=0.698 Sum_probs=42.1
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhC-CCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLE-HRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 102 (152)
+...|+||++.|..+ +.+ +|||.||..||..|+.. ...||+||..+...
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 456899999999875 665 89999999999999997 67899999998544
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1e-11 Score=78.59 Aligned_cols=54 Identities=17% Similarity=0.427 Sum_probs=42.9
Q ss_pred cCCCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCC--Ccccccccccccc
Q psy12455 47 EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH--RTCPMCKMDILKH 102 (152)
Q Consensus 47 ~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~~ 102 (152)
...+....|.||++.+...+ ....|+|.||..||.+||+.+ .+||+||..+...
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred hccCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 33445677999999998662 222599999999999999987 7899999888643
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.25 E-value=6e-12 Score=84.15 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=44.9
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
.+.+.|+||++.|.+| ++++|||+|++.||..||..+.+||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3578899999999999 999999999999999999988899999998864
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=2.7e-12 Score=87.96 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=43.8
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC-cccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKH 102 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 102 (152)
.+...|+||++.+..+ +.++|||.||..||..|+.... .||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4567899999999877 7889999999999999998765 999999988654
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=3.2e-12 Score=86.39 Aligned_cols=48 Identities=35% Similarity=0.706 Sum_probs=41.3
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC---cccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~---~CP~Cr~~~~~~ 102 (152)
...|+||++.+..+ +.++|||.||..||..|+.... .||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 44699999999877 6789999999999999998754 899999987653
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.21 E-value=1.3e-11 Score=78.92 Aligned_cols=53 Identities=23% Similarity=0.526 Sum_probs=41.1
Q ss_pred CCCccccccccCccCCCcEEEec--CCCcccHhhHHHHHhC-CCccccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILP--CKHEYHKNCIDPWLLE-HRTCPMCKMDILKHY 103 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lp--C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~ 103 (152)
+++..|+||++.+...+. ..+| |||.||..|+..|+.. ...||.||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 467789999998853221 3344 9999999999999854 568999999887654
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.20 E-value=5.7e-12 Score=89.17 Aligned_cols=49 Identities=18% Similarity=0.429 Sum_probs=42.9
Q ss_pred CCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC-cccccccccc
Q psy12455 49 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDIL 100 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~ 100 (152)
.++...|+||++.|..+ +.++|||.||..||..|+.... .||+||..+.
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34678899999999887 7789999999999999998665 8999999763
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.17 E-value=7.7e-12 Score=86.40 Aligned_cols=55 Identities=24% Similarity=0.588 Sum_probs=45.9
Q ss_pred CCCCccccccccCccCC----CcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 49 SGDGECCAICIEFYKPS----DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 49 ~~~~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
.++...|+||++.|..+ ...+.++|||.||..||..|+..+.+||+||..+....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 34677899999998642 34477889999999999999999999999999886543
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.16 E-value=8e-12 Score=76.88 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=41.3
Q ss_pred CCccccccccCccCCCcEEEe--cCCCc-ccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL--PCKHE-YHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
++..|.||++.+.+. +.+ ||||. ||..|+..|+..+..||+||+.+...
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 455699999987654 655 99999 89999999999888999999988543
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.15 E-value=2.2e-11 Score=98.76 Aligned_cols=51 Identities=31% Similarity=0.690 Sum_probs=44.2
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHh-CCCcccccccccccccCc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL-EHRTCPMCKMDILKHYGF 105 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~~~~ 105 (152)
...|+||++.+..+ +.+||||.||..|+..|+. ....||+||..+.....+
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 46899999998766 8899999999999999998 678999999998765433
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=9.7e-12 Score=74.44 Aligned_cols=46 Identities=24% Similarity=0.524 Sum_probs=39.3
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
+...|+||++.|..+ +.++|||.||..|+..| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 567799999999888 78999999999999774 56899999987543
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.11 E-value=2.1e-11 Score=74.74 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=41.1
Q ss_pred CCccccccccCccCCCcEEEe--cCCCc-ccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL--PCKHE-YHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
....|.||++...+. ..+ ||||. ||..|+..|+.....||+||+++...
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 355699999987554 555 99998 99999999998888999999988543
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=8.5e-12 Score=85.34 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=40.1
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
+...|+||++.|..+ +.+ +|||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 356699999999887 777 8999999999999988 78999999874
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.07 E-value=2e-11 Score=77.11 Aligned_cols=44 Identities=30% Similarity=0.647 Sum_probs=38.5
Q ss_pred CccccccccCccCCCcEEEecCCCc-ccHhhHHHHHhCCCcccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
+..|+||++.+..+ +.+||||. ||..|+..| ..||+||..+...
T Consensus 24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 45699999998766 88999999 999999998 7899999988654
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=5.4e-11 Score=78.47 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=39.7
Q ss_pred CCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCC------Ccccc--cccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEH------RTCPM--CKMD 98 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~------~~CP~--Cr~~ 98 (152)
+.+.|+||++.|.+| +.++ |||+|++.||..||..+ ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 567899999999988 8896 99999999999999763 48999 9866
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=7e-11 Score=90.99 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=43.2
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC-cccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 102 (152)
+.+.|+||++.|.+| ++++|||+||+.||..|+..+. +||+||.++...
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 578899999999998 8999999999999999998644 599999988543
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.02 E-value=1e-10 Score=84.75 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=43.6
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC-cccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKH 102 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 102 (152)
.+...|+||++.|..+ +.++|||.||..||..|+.... .||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 3677899999999887 7789999999999999998644 999999988654
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.3e-10 Score=69.92 Aligned_cols=51 Identities=22% Similarity=0.641 Sum_probs=41.2
Q ss_pred CCCCCccccccccCccCCCcEEEecCCCc-ccHhhHHHHHhCCCcccccccccccccCc
Q psy12455 48 ISGDGECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKHYGF 105 (152)
Q Consensus 48 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~ 105 (152)
...+...|.||++..... +.+||||. ||..|+.. ...||+||..+.....+
T Consensus 11 ~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~~i 62 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESFAL 62 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEECC
T ss_pred cCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhceEEe
Confidence 344677899999987665 89999999 99999984 46899999998765433
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.94 E-value=3.2e-10 Score=83.14 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=43.2
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCC-Ccccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~~ 102 (152)
+.+.|+||++.|.+| ++++|||+|++.||..||..+ .+||+|+.++...
T Consensus 105 ~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 678899999999988 899999999999999999864 4699999987543
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.88 E-value=2.7e-10 Score=72.81 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=38.5
Q ss_pred CccccccccCccCCCcEEEecCCCc-ccHhhHHHHHhCCCcccccccccccccC
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKHYG 104 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~ 104 (152)
+..|.||++.+... +.+||||. ||..|+..| ..||+||..+.....
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEE
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEE
Confidence 34699999997665 88999999 999999877 389999999876543
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=6.7e-10 Score=70.08 Aligned_cols=44 Identities=30% Similarity=0.652 Sum_probs=36.9
Q ss_pred CccccccccCccCCCcEEEecCCCc-ccHhhHHHHHhCCCcccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
...|+||++.+..+ +.+||||. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 44699999998776 78899999 99999964 37899999988654
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=1.1e-09 Score=71.84 Aligned_cols=48 Identities=19% Similarity=0.578 Sum_probs=38.8
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC--------CCcccc--cccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE--------HRTCPM--CKMD 98 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~--------~~~CP~--Cr~~ 98 (152)
+...|+||++.+..++.+...+|||.||..||..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45679999999876654455579999999999999963 137999 9987
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.77 E-value=1.2e-09 Score=87.04 Aligned_cols=53 Identities=23% Similarity=0.600 Sum_probs=40.1
Q ss_pred CCCccccccccCccCCCcE----E-EecCCCcccHhhHHHHHhCC-----------Ccccccccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIV----R-ILPCKHEYHKNCIDPWLLEH-----------RTCPMCKMDILKH 102 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~----~-~lpC~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~~~ 102 (152)
+...+|+||++.+.....+ - ...|+|.||..||.+|++.. +.||+||+++...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 3567899999998762211 1 23599999999999999742 4699999988644
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.74 E-value=4.8e-09 Score=80.78 Aligned_cols=48 Identities=25% Similarity=0.521 Sum_probs=40.7
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhCC--Ccccc--ccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEH--RTCPM--CKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~~--~~CP~--Cr~~~~~ 101 (152)
....|+||++.|..| +.. .|||+||+.||..||..+ ..||+ |+..+..
T Consensus 180 ~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 567799999999887 664 899999999999999865 37999 9997643
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.73 E-value=4.8e-09 Score=63.80 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=42.8
Q ss_pred CccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
.+.|+|+++.|.++ +.+ ++||+|.+.||.+|+..++.||+.+.++....
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 36799999999887 888 79999999999999998889999999886543
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.70 E-value=6.6e-09 Score=62.97 Aligned_cols=47 Identities=28% Similarity=0.649 Sum_probs=36.9
Q ss_pred CCccccccccCccCCCcEEEecCC--C---cccHhhHHHHHhC--CCcccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCK--H---EYHKNCIDPWLLE--HRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~--H---~fh~~Ci~~w~~~--~~~CP~Cr~~~~ 100 (152)
+...|.||++....+ .++||. + .||..||.+|+.. +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~---l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCc---eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 566799999985433 468854 4 8999999999975 568999998764
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.65 E-value=5e-09 Score=83.98 Aligned_cols=45 Identities=24% Similarity=0.674 Sum_probs=39.5
Q ss_pred CCccccccccCccCCCcEEEecCCCc-ccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHE-YHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
++..|+||++.+..+ +.+||||. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 467899999998776 88999999 999999988 6899999988654
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.28 E-value=6.5e-07 Score=59.04 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=38.3
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhC-CCcccccccccccccC
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILKHYG 104 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~~ 104 (152)
.|.+|--.+. ...+.+||+|+||.+|+..|.+. .+.||.|+.++.....
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 3777765553 33588999999999999999865 5799999998866543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.12 E-value=3e-06 Score=64.55 Aligned_cols=49 Identities=18% Similarity=0.480 Sum_probs=40.7
Q ss_pred CCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCCC--cccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHR--TCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~~--~CP~Cr~~~~~~ 102 (152)
....|.||.+.+..+ ..-+ |+|.||..|+..|++.+. .||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 356799999998876 4444 999999999999998755 899999988654
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.60 E-value=0.0049 Score=39.97 Aligned_cols=51 Identities=25% Similarity=0.511 Sum_probs=40.7
Q ss_pred CCccccccccCccCCCcEEEecC-CCcccHhhHHHHHhCCCcccccccccccccCcc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPC-KHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV 106 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC-~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 106 (152)
+-..|-.|.-... ..+.| .|.+|..||...+.....||+|+.+++..-.+.
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 5567999987643 24445 699999999999999999999999998775544
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.23 E-value=0.0033 Score=40.90 Aligned_cols=36 Identities=14% Similarity=0.394 Sum_probs=25.9
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHH
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL 86 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~ 86 (152)
++..|.||.+.+..+-...-+.|+|.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 456799999864333222338899999999999843
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.75 E-value=0.0086 Score=38.05 Aligned_cols=32 Identities=22% Similarity=0.773 Sum_probs=23.3
Q ss_pred CCCccccccccCccCCCcEEEec---CCCcccHhhHHHH
Q psy12455 50 GDGECCAICIEFYKPSDIVRILP---CKHEYHKNCIDPW 85 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lp---C~H~fh~~Ci~~w 85 (152)
..+..|.||-. +... .++| |+.+||..||.+.
T Consensus 13 ~~D~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-cccc---ceeccccccccccHhhcccc
Confidence 36677999953 3333 3455 8899999999996
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.06 E-value=0.02 Score=34.70 Aligned_cols=46 Identities=26% Similarity=0.574 Sum_probs=31.8
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----cccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMD 98 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~~ 98 (152)
.....|.||.+. ++.+.--.|...||..|+...+.... .|+.|...
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 355679999764 33222223889999999988776533 79999653
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.09 E-value=0.07 Score=47.74 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=43.8
Q ss_pred CCccccccccCccCCCcEEEecCC-CcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCK-HEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~-H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
+.+.|+|-++.|.+| +++|-| +.|-+..|.+|+..+.+||.=|.++...
T Consensus 890 ~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 567799999999999 999987 5899999999999988999999988643
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.90 E-value=0.12 Score=30.61 Aligned_cols=47 Identities=21% Similarity=0.497 Sum_probs=30.7
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHHh-----CCCccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLL-----EHRTCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~-----~~~~CP~Cr~ 97 (152)
+...|+||...+.....++.- .|..-||..|+.--.. ....||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 556799999887543333322 3888999999853221 2347999965
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.53 E-value=0.28 Score=28.91 Aligned_cols=44 Identities=27% Similarity=0.746 Sum_probs=29.0
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----ccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~ 97 (152)
.+..|.+|.+. .+.+.--.|...||..|+..-+.... .||.|..
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 56679999874 32222223888999999987543322 6999965
No 80
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=88.47 E-value=0.25 Score=31.43 Aligned_cols=50 Identities=16% Similarity=0.481 Sum_probs=31.0
Q ss_pred CCCccccccccCccCC-CcEEEec-CCCcccHhhHHHHHhCCC--ccccccccc
Q psy12455 50 GDGECCAICIEFYKPS-DIVRILP-CKHEYHKNCIDPWLLEHR--TCPMCKMDI 99 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~-~~~~~lp-C~H~fh~~Ci~~w~~~~~--~CP~Cr~~~ 99 (152)
+++..|.||...-... +.+..-. |.-.||..|+..-+.-.. .||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4667899998753222 2222222 888999999975332222 699996543
No 81
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.35 E-value=0.4 Score=30.59 Aligned_cols=50 Identities=22% Similarity=0.577 Sum_probs=32.0
Q ss_pred CcCCCCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----cccccccc
Q psy12455 46 KEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMD 98 (152)
Q Consensus 46 ~~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~~ 98 (152)
......+..|.+|.+. ++-+..-.|...||..|+..=+.... .||.|...
T Consensus 19 ~~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 19 GTLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CSSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3344466779999865 32222222888999999976554322 69999653
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.32 E-value=0.33 Score=27.31 Aligned_cols=44 Identities=25% Similarity=0.645 Sum_probs=26.6
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----ccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKM 97 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~ 97 (152)
.|.||...-...+.+.--.|...||..|+..=+.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888876533222222223889999999965333322 5888854
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=86.07 E-value=0.16 Score=36.56 Aligned_cols=46 Identities=22% Similarity=0.559 Sum_probs=30.6
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----ccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~~~ 99 (152)
.+..|.+|.+. ++-+..-.|...||..|+..-+.... .||.|+...
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45569999865 43222222889999999877655422 699997654
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.87 E-value=0.12 Score=29.96 Aligned_cols=45 Identities=29% Similarity=0.754 Sum_probs=28.7
Q ss_pred CCCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----ccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKM 97 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~ 97 (152)
..+..|.+|.+. .+.+.--.|...||..|+..-+.... .||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356679999875 32222223888999999975443322 5888753
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.42 E-value=0.15 Score=30.15 Aligned_cols=46 Identities=28% Similarity=0.663 Sum_probs=29.2
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----ccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~~~ 99 (152)
.+..|.+|.+. ++.+.--.|...||..|+..-+.... .||.|....
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 46679999763 32122222888999999975443322 699996643
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=85.29 E-value=0.22 Score=30.42 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhC----CCcccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLE----HRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~ 100 (152)
+...|.||..... ++.++.- .|..-||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4566999987643 2222222 28889999999654432 236999976553
No 87
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=84.14 E-value=0.14 Score=30.03 Aligned_cols=47 Identities=28% Similarity=0.728 Sum_probs=30.6
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----cccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~~~~ 100 (152)
.+..|.+|... ++.+.--.|...||..|+..-+.... .||.|.....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45679999874 33222223889999999975443322 6999976554
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.89 E-value=0.28 Score=31.42 Aligned_cols=48 Identities=27% Similarity=0.529 Sum_probs=30.6
Q ss_pred CCCccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhCCC----cccccccc
Q psy12455 50 GDGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHR----TCPMCKMD 98 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~~~----~CP~Cr~~ 98 (152)
.++..|.||...-... .++.- -|...||..|+..=+.... .||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3566799998763222 22322 2889999999974333322 59999664
No 89
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=83.55 E-value=0.43 Score=30.91 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=28.0
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhC---CCccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE---HRTCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~---~~~CP~Cr~ 97 (152)
+...| ||......+..+.--.|...||..|+..-+.. ...||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 33457 89776544432222238899999998643222 237999964
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=83.10 E-value=0.35 Score=31.81 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=25.4
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHh
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL 87 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~ 87 (152)
.+..|.||.+.-...+.+.--.|...||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 5667999987632222233344999999999987664
No 91
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=82.82 E-value=0.57 Score=28.54 Aligned_cols=47 Identities=19% Similarity=0.529 Sum_probs=29.2
Q ss_pred CCccccccccCcc-CCCcEEEec-CCCcccHhhHHHHHhCCC--ccccccc
Q psy12455 51 DGECCAICIEFYK-PSDIVRILP-CKHEYHKNCIDPWLLEHR--TCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~-~~~~~~~lp-C~H~fh~~Ci~~w~~~~~--~CP~Cr~ 97 (152)
++..|.||.+.-. ..+.+..-- |.-.||..|+..-..-.+ .|+.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 5667999987531 222333322 889999999965322222 6888854
No 92
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=82.40 E-value=0.19 Score=36.81 Aligned_cols=45 Identities=27% Similarity=0.588 Sum_probs=29.9
Q ss_pred CCccccccccCccCCCcEEEec-CCCcccHhhHHHHHhCCC----ccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHR----TCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~~----~CP~Cr~~~ 99 (152)
.+..|.+|... ++ +..-. |...||..|+...+.... .||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45669999754 32 22222 888999999977654422 699997643
No 93
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.27 E-value=0.86 Score=27.82 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=28.6
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHH---------HhCCCcccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPW---------LLEHRTCPMCKMD 98 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w---------~~~~~~CP~Cr~~ 98 (152)
...| ||.........+.--.|..-||..|+.-- ......||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3446 89887653322222238899999998321 1245689999653
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=81.21 E-value=0.87 Score=26.91 Aligned_cols=49 Identities=29% Similarity=0.668 Sum_probs=30.6
Q ss_pred CCCccccccccCccCC-CcEEEec-CCCcccHhhHHHHHh-----C--CCcccccccc
Q psy12455 50 GDGECCAICIEFYKPS-DIVRILP-CKHEYHKNCIDPWLL-----E--HRTCPMCKMD 98 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~~-~~~~~lp-C~H~fh~~Ci~~w~~-----~--~~~CP~Cr~~ 98 (152)
+++..|.||....... ..+..-. |...||..|+..-+. . .-.|+.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3567799998764322 2222222 889999999875331 1 2268888653
No 95
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=80.86 E-value=0.23 Score=29.77 Aligned_cols=45 Identities=24% Similarity=0.616 Sum_probs=29.2
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----cccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMD 98 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~~ 98 (152)
.+..|.||.+. ++.+.--.|...||..|+..-+.... .||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 56679999864 32222223888999999975443322 69999653
No 96
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=80.42 E-value=1.7 Score=27.31 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=28.4
Q ss_pred CCccccccccCccCCCcEEEec--CCCcccHhhHHHHHhC
Q psy12455 51 DGECCAICIEFYKPSDIVRILP--CKHEYHKNCIDPWLLE 88 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp--C~H~fh~~Ci~~w~~~ 88 (152)
....|.+|.+.+++. ..+..| =.|.||..|-+..++.
T Consensus 14 a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 456799999999865 334444 4799999999998865
No 97
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.79 E-value=2.4 Score=27.02 Aligned_cols=52 Identities=23% Similarity=0.474 Sum_probs=35.8
Q ss_pred CCccccccccCccCC---CcEE-EecCCCcccHhhHHHHHh-CCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPS---DIVR-ILPCKHEYHKNCIDPWLL-EHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~---~~~~-~lpC~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 102 (152)
....|.||-+.+... +..+ .--|+--.|+.|++--.+ .++.||-|+..+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 346799999986432 2222 223888899999965443 467999999888644
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=79.31 E-value=2.2 Score=29.51 Aligned_cols=45 Identities=27% Similarity=0.505 Sum_probs=30.2
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHh---------CCC--cccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL---------EHR--TCPMCKMD 98 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~---------~~~--~CP~Cr~~ 98 (152)
.+..|.+|.+. ++-+-.-.|-..||..||..-+. ... .||.|+..
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 56779999876 43222223888999999986552 122 79999753
No 99
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.39 E-value=0.25 Score=31.38 Aligned_cols=50 Identities=22% Similarity=0.565 Sum_probs=31.7
Q ss_pred CCccccccccCccCC-CcEEEec-CCCcccHhhHHHHHhC--------CCcccccccccc
Q psy12455 51 DGECCAICIEFYKPS-DIVRILP-CKHEYHKNCIDPWLLE--------HRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~-~~~~~lp-C~H~fh~~Ci~~w~~~--------~~~CP~Cr~~~~ 100 (152)
.+..|.||...-... ..+..-- |...||..|+..-+.. .-.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 456799998763321 2223322 8899999999765431 227999976553
No 100
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.25 E-value=3.1 Score=25.49 Aligned_cols=48 Identities=19% Similarity=0.470 Sum_probs=29.1
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHH---h--CCCccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWL---L--EHRTCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~---~--~~~~CP~Cr~~~ 99 (152)
+...| ||...+.....++.- .|..-||..|+.--. . ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34446 898876433322222 388899999984211 1 344799997643
No 101
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=75.55 E-value=2.8 Score=24.91 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=22.8
Q ss_pred CCccccccccCccCCCcEEEe--cCCCcccHhhH
Q psy12455 51 DGECCAICIEFYKPSDIVRIL--PCKHEYHKNCI 82 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci 82 (152)
....|.+|...+.+.+..+.- .|..-||..|+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 556799999988665444333 48889999998
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=74.74 E-value=0.86 Score=30.05 Aligned_cols=46 Identities=26% Similarity=0.618 Sum_probs=27.9
Q ss_pred CccccccccCccCCCcEEEe-cCCCcccHhhHHHHHhCCC----ccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLEHR----TCPMCKM 97 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~~~----~CP~Cr~ 97 (152)
-..|.||.+.-...+.+..- .|...||..|+..-+.... .||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 33588887642222222322 2889999999976554322 6888864
No 103
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=73.48 E-value=0.64 Score=24.26 Aligned_cols=15 Identities=20% Similarity=0.600 Sum_probs=10.7
Q ss_pred CCccccccccCccCC
Q psy12455 51 DGECCAICIEFYKPS 65 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~ 65 (152)
+.+.|+||+..|...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 457788888877654
No 104
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.93 E-value=1.9 Score=26.43 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=29.4
Q ss_pred CCccccccccCccCCCcEEEe--cCCCcccHhhHHHHHh---------CCCccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPWLL---------EHRTCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~w~~---------~~~~CP~Cr~~~ 99 (152)
+...| ||......+..+.-- .|..-||..|+.---. .+..||.|+...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 44557 898874444323323 4888999999843211 244799997643
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.88 E-value=5.9 Score=25.88 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=21.0
Q ss_pred CCccccccccCc-----cCCCcE-EEecCCCcccHhhHH
Q psy12455 51 DGECCAICIEFY-----KPSDIV-RILPCKHEYHKNCID 83 (152)
Q Consensus 51 ~~~~C~IC~~~~-----~~~~~~-~~lpC~H~fh~~Ci~ 83 (152)
....|.+|+..- ..++.+ .-..|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 345699998752 112222 333499999999994
No 106
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=72.69 E-value=0.57 Score=31.62 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=30.5
Q ss_pred ccccccccCccCCCcEEE-ecCCCcccHhhHHHHHhCCCccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRI-LPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 99 (152)
..|..|...|..-..-.. -.||.+||..|....+.....|-.|-..+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 469999998864322233 34999999999877665566788885543
No 107
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=71.54 E-value=3.3 Score=26.06 Aligned_cols=51 Identities=14% Similarity=0.300 Sum_probs=32.3
Q ss_pred CCccccccccCccCCCcEEE-ecCCCcccHhhHHHHHh-------CCCccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRI-LPCKHEYHKNCIDPWLL-------EHRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~w~~-------~~~~CP~Cr~~~~~ 101 (152)
+...|.+|...|..-..-.. -.||.+||..|....+. ....|-.|-..+..
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 45579999998865432233 34999999999755331 11257777655543
No 108
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=71.37 E-value=1 Score=30.87 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=31.1
Q ss_pred CCCccccccccCccC--CCcEEEecCCCcccHhhHHHHHhC-CC---cccccccc
Q psy12455 50 GDGECCAICIEFYKP--SDIVRILPCKHEYHKNCIDPWLLE-HR---TCPMCKMD 98 (152)
Q Consensus 50 ~~~~~C~IC~~~~~~--~~~~~~lpC~H~fh~~Ci~~w~~~-~~---~CP~Cr~~ 98 (152)
.+...|.+|...|.. .......-|.|.+|..|-..--.. +. .|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 356789999999842 222233349999999996532111 11 58888653
No 109
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=71.09 E-value=5 Score=22.45 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=25.9
Q ss_pred cccccccCccCCCcEEEe--cCCCcccHhhHHHH----HhCCCcccccc
Q psy12455 54 CCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPW----LLEHRTCPMCK 96 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~w----~~~~~~CP~Cr 96 (152)
.|.+|...+.....++.- .|..-||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 377888877544333322 37778999997421 12455788874
No 110
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=70.29 E-value=0.69 Score=33.44 Aligned_cols=44 Identities=25% Similarity=0.635 Sum_probs=28.2
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----cccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMD 98 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~~ 98 (152)
+..|.+|.+. ++-+..-.|...||..|+..=+.... .||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3459999865 32122223778999999975443321 69999765
No 111
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=69.17 E-value=1.8 Score=28.14 Aligned_cols=11 Identities=27% Similarity=1.096 Sum_probs=10.3
Q ss_pred ccHhhHHHHHh
Q psy12455 77 YHKNCIDPWLL 87 (152)
Q Consensus 77 fh~~Ci~~w~~ 87 (152)
||+.||..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 112
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=68.88 E-value=1.9 Score=28.05 Aligned_cols=11 Identities=36% Similarity=1.352 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q psy12455 77 YHKNCIDPWLL 87 (152)
Q Consensus 77 fh~~Ci~~w~~ 87 (152)
||+.||..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 113
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=68.70 E-value=3.8 Score=32.78 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=29.3
Q ss_pred ccccccccCccCCCcEEEecCCCc--ccHhhHHHHHhCCC--cccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHE--YHKNCIDPWLLEHR--TCPMCKMDIL 100 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~--fh~~Ci~~w~~~~~--~CP~Cr~~~~ 100 (152)
..|+|-+..|..| ++...|.|. |-..-+..+..... .||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4599888887655 455569998 44333333333322 7999988763
No 114
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=68.30 E-value=4 Score=25.31 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHH
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPW 85 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w 85 (152)
+...|.+|...|..-..-..- .||.+||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345699999998654322333 49999999997543
No 115
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=67.68 E-value=2.9 Score=29.33 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=29.4
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHH-----hCCCcccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWL-----LEHRTCPMCKMD 98 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~-----~~~~~CP~Cr~~ 98 (152)
+...| +|.........++.- .|...||..|+.--. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45568 998875433222322 388899999994211 124479999764
No 116
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=67.64 E-value=4.3 Score=32.40 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=30.0
Q ss_pred ccccccccCccCCCcEEEecCCCc--ccHhhHHHHHhCCC--cccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHE--YHKNCIDPWLLEHR--TCPMCKMDIL 100 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~--fh~~Ci~~w~~~~~--~CP~Cr~~~~ 100 (152)
..|+|-+..|..| ++...|.|. |-..-+..+..... .||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4599888887655 455569998 54443333333333 7999988763
No 117
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=67.26 E-value=3.8 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=23.1
Q ss_pred CccccccccCccCCCcEEEe-cCCCcccHhhHHH
Q psy12455 52 GECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDP 84 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~ 84 (152)
...|.+|...|..-..-..- .||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44699999988643222333 4999999999754
No 118
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=66.59 E-value=4.1 Score=24.54 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=21.7
Q ss_pred ccccccccCccCCCcEEE-ecCCCcccHhhHH
Q psy12455 53 ECCAICIEFYKPSDIVRI-LPCKHEYHKNCID 83 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~ 83 (152)
..|.+|...|..-..-.. -.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 469999998864322223 3399999999864
No 119
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=66.51 E-value=3.5 Score=27.73 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=22.7
Q ss_pred CccccccccCccCCCcEEEe-cCCCcccHhhHHH
Q psy12455 52 GECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDP 84 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~ 84 (152)
...|.+|...|..-..-..- .||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34699999988643322333 4999999998643
No 120
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.41 E-value=4.5 Score=25.06 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=21.9
Q ss_pred CccccccccCccCCCcEEE-ecCCCcccHhhHH
Q psy12455 52 GECCAICIEFYKPSDIVRI-LPCKHEYHKNCID 83 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~ 83 (152)
...|.+|...|..-..-.. -.||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3569999998854322223 3499999998853
No 121
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=65.32 E-value=3.6 Score=25.92 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=30.9
Q ss_pred CccccccccCccCCCcEEE-ecCCCcccHhhHHHHHhC------CCcccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRI-LPCKHEYHKNCIDPWLLE------HRTCPMCKMDIL 100 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~ 100 (152)
...|.+|...|..-..-.. -.||++||..|...++.. ...|-.|-..+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 4569999998864322233 349999999998654321 125666655443
No 122
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=65.08 E-value=5.3 Score=29.48 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHH
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPW 85 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w 85 (152)
++..|.+|...|..-..-..- .||++||..|...+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 456899999988654222333 49999999996543
No 123
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=64.57 E-value=6.7 Score=26.62 Aligned_cols=45 Identities=27% Similarity=0.514 Sum_probs=28.4
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHH------h---CC--Ccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL------L---EH--RTCPMCKMD 98 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~------~---~~--~~CP~Cr~~ 98 (152)
.+..|.||.+. ++-+---.|-..||..||..-+ + .. =.|+.|+..
T Consensus 56 ~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 45669999875 3211111277899999998642 1 11 279999654
No 124
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=63.47 E-value=5.3 Score=25.96 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=31.5
Q ss_pred CccccccccCccCCCcEEEe--cCCCcccHhhHHHH------H----hCCCccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPW------L----LEHRTCPMCKMDI 99 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~w------~----~~~~~CP~Cr~~~ 99 (152)
...|.||...+.+...++.- .|..-||..|+.-- + .....||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45699999987554444433 37889999998321 1 0234799997654
No 125
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=63.20 E-value=1.9 Score=25.84 Aligned_cols=46 Identities=17% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHh---CCCccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL---EHRTCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~---~~~~CP~Cr~ 97 (152)
+...| ||.........+.--.|..-||..|+.---. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44557 9987654221222223888999999853221 2336888864
No 126
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.15 E-value=3.7 Score=30.09 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHH
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDP 84 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~ 84 (152)
++..|.+|...|..-..-..- .||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 356899999988643322333 3999999988644
No 127
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=62.05 E-value=5.1 Score=26.28 Aligned_cols=46 Identities=22% Similarity=0.534 Sum_probs=28.6
Q ss_pred CCccccccccCccCCCcEEEe---cCCCcccHhhHHHHHhCCC----cccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL---PCKHEYHKNCIDPWLLEHR----TCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l---pC~H~fh~~Ci~~w~~~~~----~CP~Cr~~~~~~ 102 (152)
.+..|.+|.+. ++ +..- .|-..||..|+. |.... .||.|...+-..
T Consensus 14 ~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 14 HEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 56679999843 32 2222 266799999997 44322 588776655444
No 128
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=60.14 E-value=1.7 Score=28.50 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=20.6
Q ss_pred EecCCCcccHhhHHHHHhCCCcccccccccccccCcc
Q psy12455 70 ILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFV 106 (152)
Q Consensus 70 ~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~~~~ 106 (152)
...||+.|. .-+.....||.|+......+.|.
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P~F~ 101 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEWIEEPRFK 101 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCCBCCCCEE
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCccCCccee
Confidence 344888882 11123457999999887776554
No 129
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.59 E-value=5.3 Score=25.41 Aligned_cols=45 Identities=20% Similarity=0.606 Sum_probs=26.0
Q ss_pred CCccccccccCccCCCcEEEec--CC-CcccHhhHHHHHhC----CCccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP--CK-HEYHKNCIDPWLLE----HRTCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp--C~-H~fh~~Ci~~w~~~----~~~CP~Cr~~~ 99 (152)
+...| ||..... ++.+..=. |. .-||..|+. |.. +-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34456 9988643 32111112 44 579999996 332 23799997643
No 130
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=58.32 E-value=1.2 Score=27.61 Aligned_cols=43 Identities=28% Similarity=0.651 Sum_probs=24.6
Q ss_pred cccccccCccCCCcEEEec-CCCcccHhhHHHHHhCC-----Cccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEH-----RTCPMCKM 97 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~-----~~CP~Cr~ 97 (152)
.|.||...-... .+..-- |...||..|+..-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466676543222 222222 88899999998655431 25888864
No 131
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=55.55 E-value=8 Score=23.16 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCccccccccCccCCCcEEEecC-CCcccHhhHHHH
Q psy12455 51 DGECCAICIEFYKPSDIVRILPC-KHEYHKNCIDPW 85 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC-~H~fh~~Ci~~w 85 (152)
+..-|.||.++- .++.+-| +-+||..|+.+.
T Consensus 7 e~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 455699998872 2356668 679999998774
No 132
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=55.07 E-value=1.4 Score=29.18 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=27.9
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhCCC----cccccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR----TCPMCKMDIL 100 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~----~CP~Cr~~~~ 100 (152)
.|.||...-...+.+.--.|...||..|+..=+.... .||.|...+.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 4778876533332222223889999999975443322 5888866543
No 133
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=54.59 E-value=9.3 Score=27.40 Aligned_cols=47 Identities=23% Similarity=0.464 Sum_probs=32.2
Q ss_pred ccccccccCccCCCc---EEEec-CCCcccHhhHHH------HHh-----CCCccccccccc
Q psy12455 53 ECCAICIEFYKPSDI---VRILP-CKHEYHKNCIDP------WLL-----EHRTCPMCKMDI 99 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~---~~~lp-C~H~fh~~Ci~~------w~~-----~~~~CP~Cr~~~ 99 (152)
..|+||...+...+. ++.-- |..-||..|..- -+. ....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 459999998877652 33333 889999999832 111 156899998754
No 134
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.55 E-value=8.2 Score=23.08 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
....|..|-+.+... .+..-+..||..|+ .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCCCC
Confidence 345699999987753 34446788998885 58888888754
No 135
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.47 E-value=6.7 Score=22.76 Aligned_cols=40 Identities=23% Similarity=0.552 Sum_probs=26.2
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
...|..|-+.+... .+..-+..||..|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGR---VIKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSC---CEEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecce---EEEECcccccccCC--------EeCCCCCcCCCC
Confidence 44688888877632 23335677887774 577887777554
No 136
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=51.93 E-value=3 Score=33.29 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred CccccccccCccCCCc-EEEecCCCcccHhhHHHHHhC-------CCccccccccc
Q psy12455 52 GECCAICIEFYKPSDI-VRILPCKHEYHKNCIDPWLLE-------HRTCPMCKMDI 99 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~w~~~-------~~~CP~Cr~~~ 99 (152)
...|.+|...|..-.. -..-.||++||..|...++.. ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4569999988854321 123349999999999765521 22577775443
No 137
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.79 E-value=2.8 Score=25.75 Aligned_cols=43 Identities=30% Similarity=0.726 Sum_probs=25.4
Q ss_pred cccccccCccCCCcEEEe-cCCCcccHhhHHHHHhC--C---Cccccccc
Q psy12455 54 CCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLE--H---RTCPMCKM 97 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~--~---~~CP~Cr~ 97 (152)
.|.||...-... .+..- .|...||..|+..=+.. . =.||.|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678887642222 22222 28899999999753332 1 15777753
No 138
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=50.66 E-value=21 Score=21.66 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=29.8
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
....|..|.+.+... .+..-+..||..|+ .|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEeccc---EEEECCceECccCC--------EecCCCCCCCCC
Confidence 445799999988753 34447788998874 688898887654
No 139
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=50.22 E-value=6.1 Score=27.58 Aligned_cols=47 Identities=23% Similarity=0.485 Sum_probs=30.8
Q ss_pred CCccccccccCccC--CCcEEEecCCCcccHhhHHHHHhCCC--cccccccc
Q psy12455 51 DGECCAICIEFYKP--SDIVRILPCKHEYHKNCIDPWLLEHR--TCPMCKMD 98 (152)
Q Consensus 51 ~~~~C~IC~~~~~~--~~~~~~lpC~H~fh~~Ci~~w~~~~~--~CP~Cr~~ 98 (152)
++..|.+|...|.. +......-|.|.+|..|- .|..... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 46779999998632 223334449999999997 2433322 58888653
No 140
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.76 E-value=8.8 Score=23.58 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=29.0
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
....|..|-+.+... .+..-+..||..|+ .|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIRGP---FLVALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCCSC---EEEETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCCccCCCEecce---EEEECCccccccCC--------ccCCCCCCCCCC
Confidence 345699999988533 34456888998774 688898887643
No 141
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=49.51 E-value=14 Score=22.07 Aligned_cols=45 Identities=20% Similarity=0.606 Sum_probs=25.7
Q ss_pred CCccccccccCccCCCcEEEec--CC-CcccHhhHHHHHhC----CCccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP--CK-HEYHKNCIDPWLLE----HRTCPMCKMDI 99 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp--C~-H~fh~~Ci~~w~~~----~~~CP~Cr~~~ 99 (152)
+...| ||..... ++.+.-=. |. .-||..|+. |.. +-.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34457 8988643 32111112 44 589999996 332 22699996543
No 142
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=49.37 E-value=4.7 Score=23.59 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=25.8
Q ss_pred cccccccCccCCCcEEEec-CCCcccHhhHHHHHhCCCccccc
Q psy12455 54 CCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMC 95 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~~~~CP~C 95 (152)
.|-.|...|... ....-+ |++.||.+|=.---+.--.||-|
T Consensus 17 ~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 488898888543 223334 99999999943211222378877
No 143
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=48.49 E-value=4.3 Score=30.27 Aligned_cols=43 Identities=28% Similarity=0.682 Sum_probs=23.3
Q ss_pred cccccccCccCCCcEEEe-cCCCcccHhhHHHHHhC--CC---ccccccc
Q psy12455 54 CCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWLLE--HR---TCPMCKM 97 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~~~--~~---~CP~Cr~ 97 (152)
.|.+|...-... .+..- -|...||..|+..=+.. .+ .||.|+.
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577886542222 22222 28899999999854432 11 5999964
No 144
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.43 E-value=11 Score=22.55 Aligned_cols=41 Identities=15% Similarity=0.419 Sum_probs=28.3
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
....|.-|-+.+... .+..-+..||..|+ .|-.|+.+|...
T Consensus 14 ~~~~C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIIDEQ---PLIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCCSC---CCCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCCccCCCEecce---EEEECcceeCCCCC--------EeCCCCCccCCC
Confidence 345699998887732 23346778888774 688898887644
No 145
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.25 E-value=14 Score=21.24 Aligned_cols=38 Identities=18% Similarity=0.552 Sum_probs=26.3
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
..|..|-+.+... .+..-+..||..|+ .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITTG---GVTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCSS---EEESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCcccCCeeccc---eEEECccccCCCCC--------ccCCCCCcCCc
Confidence 4588888887643 34446778888774 58888877743
No 146
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=48.14 E-value=1.3 Score=27.37 Aligned_cols=14 Identities=14% Similarity=0.776 Sum_probs=12.3
Q ss_pred cCCCcccHhhHHHH
Q psy12455 72 PCKHEYHKNCIDPW 85 (152)
Q Consensus 72 pC~H~fh~~Ci~~w 85 (152)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 48999999998887
No 147
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=47.98 E-value=5.1 Score=23.78 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=7.0
Q ss_pred CCccccccccCccC
Q psy12455 51 DGECCAICIEFYKP 64 (152)
Q Consensus 51 ~~~~C~IC~~~~~~ 64 (152)
+-+.|..|...|..
T Consensus 26 ~CF~C~~C~~~L~~ 39 (76)
T 1iml_A 26 PCLKCEKCGKTLTS 39 (76)
T ss_dssp TTCBCTTTCCBCCT
T ss_pred CCCCccccCccCCC
Confidence 34455555555543
No 148
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=47.53 E-value=2.9 Score=25.12 Aligned_cols=43 Identities=28% Similarity=0.670 Sum_probs=24.3
Q ss_pred cccccccCccCCCcEEEec-CCCcccHhhHHHHHhC-----CCccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLE-----HRTCPMCKM 97 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~w~~~-----~~~CP~Cr~ 97 (152)
.|.||...-..+ .+..-- |...||..|+..=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456776532112 222222 8899999999754432 115888754
No 149
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.24 E-value=14 Score=21.70 Aligned_cols=42 Identities=19% Similarity=0.414 Sum_probs=29.8
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
....|..|-+.+...+.+ ..-+..||..|+ .|-.|+..|...
T Consensus 8 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKV--SSLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEE--EETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEE--EECCeEeeCCCC--------CCCCCCCccCCC
Confidence 345699999988755533 345778998774 688898887643
No 150
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.76 E-value=15 Score=22.04 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=28.4
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
....|.-|-+.+...+.+. .-+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL--ALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE--ETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEE--ECCcccccccC--------CcCcCCCCcC
Confidence 3456999999887555333 35678888774 6888988775
No 151
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.03 E-value=13 Score=24.22 Aligned_cols=51 Identities=6% Similarity=-0.195 Sum_probs=35.3
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
-+.|..|...|..........=+..||..|..+.+..+..|-.|..++...
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 456888888875210112334567899999988776666899999888754
No 152
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.34 E-value=2.5 Score=24.71 Aligned_cols=36 Identities=22% Similarity=0.475 Sum_probs=22.9
Q ss_pred ccccccccCccCCCcEEE---ec--CCCcccHhhHHHHHhC
Q psy12455 53 ECCAICIEFYKPSDIVRI---LP--CKHEYHKNCIDPWLLE 88 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~---lp--C~H~fh~~Ci~~w~~~ 88 (152)
..|+-|.-.+........ .. |++.||..|+..|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 458888777655433222 22 7788888888887543
No 153
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=43.01 E-value=9.2 Score=21.85 Aligned_cols=38 Identities=16% Similarity=0.426 Sum_probs=26.5
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
..|..|.+.+. .+ .+..-+..||..|+ .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 45888888776 32 34446778888774 58888887754
No 154
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=42.95 E-value=5.1 Score=19.94 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=15.9
Q ss_pred cccccccCccCCCcEEEecCCCcccHhh
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNC 81 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~C 81 (152)
.|+.|-......+. +..=|..||..|
T Consensus 5 ~C~~C~k~Vy~~Ek--~~~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEK--VNCLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGC--CCSSSSCCCGGG
T ss_pred cCCccCCEEeccee--EEECCeEecccC
Confidence 48888776654432 223567788777
No 155
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=42.24 E-value=5.2 Score=23.14 Aligned_cols=43 Identities=23% Similarity=0.644 Sum_probs=24.3
Q ss_pred CCccccccccCccCCCcEEEec--CC-CcccHhhHHHHHhC----CCccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILP--CK-HEYHKNCIDPWLLE----HRTCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lp--C~-H~fh~~Ci~~w~~~----~~~CP~Cr~ 97 (152)
+..-| ||.+... ++.+.-=. |. .-||..|+. +.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34446 8987642 32111112 44 589999997 332 226888864
No 156
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.09 E-value=12 Score=21.49 Aligned_cols=37 Identities=19% Similarity=0.498 Sum_probs=23.9
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
..|.-|-+.+... . +..-+..||..|+ .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~-~--~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSG-G--ITYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTT-C--EEETTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCcc-e--EEECccccccCcC--------EECCCCCCCC
Confidence 4588888777532 2 2335667887764 5778877765
No 157
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=42.03 E-value=18 Score=25.45 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCccccccccCccCCCcEEEe---cCCCcccHhhHHHHHhC
Q psy12455 51 DGECCAICIEFYKPSDIVRIL---PCKHEYHKNCIDPWLLE 88 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l---pC~H~fh~~Ci~~w~~~ 88 (152)
.+.-|.||-+. + .+..- .|...||..||..++..
T Consensus 78 ~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCH
Confidence 45568888764 3 22222 37789999999998843
No 158
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=41.53 E-value=24 Score=23.00 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=34.5
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
+-+.|..|...|..........=+..||..|..+-+.....|..|...+..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 567788888887531111333456778888887766555589999888764
No 159
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.06 E-value=16 Score=21.19 Aligned_cols=41 Identities=20% Similarity=0.512 Sum_probs=27.3
Q ss_pred CccccccccCccC--CCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 52 GECCAICIEFYKP--SDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 52 ~~~C~IC~~~~~~--~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
...|.-|-+.+.. .+. .+..-+..||..|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-YISFEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-CEECSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcc-eEEECCcccCcccC--------EeccCCCcCCC
Confidence 3458889888764 222 23336788888774 68888887753
No 160
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=40.78 E-value=21 Score=28.73 Aligned_cols=44 Identities=20% Similarity=0.444 Sum_probs=28.8
Q ss_pred CCccccccccCccCCCcEEEe--cCCCcccHhhHHHHHhCC----------Cccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPWLLEH----------RTCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~w~~~~----------~~CP~Cr~ 97 (152)
.+..|.+|-+. ++-+..- .|...||..||..++... =.|=+|.-
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 45568888764 3322333 488999999999988321 16877754
No 161
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.71 E-value=17 Score=20.95 Aligned_cols=40 Identities=20% Similarity=0.511 Sum_probs=26.3
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
..|..|.+.+...+. .+..-+..||..|+ .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCCC
Confidence 458888887764322 33346778888774 57788777654
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.49 E-value=14 Score=21.78 Aligned_cols=40 Identities=18% Similarity=0.474 Sum_probs=27.6
Q ss_pred ccccccccCccC--CCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 53 ECCAICIEFYKP--SDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 53 ~~C~IC~~~~~~--~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
..|..|-+.+.. ... .+..-+..||..|+ .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCCC
Confidence 359999888774 212 33446778998884 68888887753
No 163
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.39 E-value=18 Score=20.85 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=26.7
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
..|..|.+.+...+.+ +..-+..||..|+ .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceE-EEECcCeecccCC--------cccccCCccCCC
Confidence 3588888887754322 2235677887774 578887777543
No 164
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.94 E-value=19 Score=21.29 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=28.0
Q ss_pred CCccccccccCccCCCcEEEe-cCCCcccHhhHHHHH----hCCCccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL-PCKHEYHKNCIDPWL----LEHRTCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w~----~~~~~CP~Cr~ 97 (152)
+...| ||......++.++.- .|..-||..|+.--- .....||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 34558 798775444323322 388889999985321 12347999965
No 165
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.28 E-value=27 Score=20.34 Aligned_cols=43 Identities=19% Similarity=0.504 Sum_probs=28.8
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
....|.-|.+.+...+.++ ..-+..||..|+ .|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCE-EETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEE-EeCccEeccccC--------eECCCCCCCCCC
Confidence 3456999999886443332 235678888774 588888877654
No 166
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.81 E-value=13 Score=22.11 Aligned_cols=39 Identities=21% Similarity=0.615 Sum_probs=27.4
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHY 103 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 103 (152)
.|..|.+.+.. + .+..-+..||..|+ .|-.|+..|....
T Consensus 17 ~C~~C~~~I~~-~--~v~a~~~~wH~~CF--------~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 17 RCFSCDQFIEG-E--VVSALGKTYHPDCF--------VCAVCRLPFPPGD 55 (81)
T ss_dssp BCTTTCCBCCS-C--CEEETTEEECTTTS--------SCSSSCCCCCSSS
T ss_pred cCccccCEecc-c--eEEECCceeCccCC--------ccccCCCCCCCCC
Confidence 69999888763 3 23346778888774 6888988876443
No 167
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.44 E-value=16 Score=21.96 Aligned_cols=42 Identities=24% Similarity=0.600 Sum_probs=29.3
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
....|..|-+.+...+.+ ..-+..||..|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v--~a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERL--CVNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBC--CBTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEE--EECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 445699999987655433 235778998884 688888877544
No 168
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.09 E-value=12 Score=22.09 Aligned_cols=36 Identities=19% Similarity=0.522 Sum_probs=22.5
Q ss_pred cccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 54 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
.|.-|-..+... .+..-+..||..|+ .|-.|+.+|.
T Consensus 7 ~C~~C~~~I~~~---~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGR---VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSC---CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CcccCCCEecCe---eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 477777766542 23345667777663 5777777665
No 169
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.01 E-value=21 Score=21.21 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=28.5
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
..|..|.+.+...+.+ +..-+..||..|+ .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceE-EEECccccccccC--------chhhCCCccCCC
Confidence 4699998888754433 3335778998774 688888877554
No 170
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.19 E-value=16 Score=21.63 Aligned_cols=38 Identities=18% Similarity=0.551 Sum_probs=26.4
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
..|..|-+.+... .+..-+..||..|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhhC--------CcccCCCcCCC
Confidence 4588888877643 33446778888774 68888887743
No 171
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=34.96 E-value=28 Score=20.31 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=19.6
Q ss_pred CCCCccccccccC-ccCCCcEEEecCCCcccHhhHHHH
Q psy12455 49 SGDGECCAICIEF-YKPSDIVRILPCKHEYHKNCIDPW 85 (152)
Q Consensus 49 ~~~~~~C~IC~~~-~~~~~~~~~lpC~H~fh~~Ci~~w 85 (152)
.++...|.||+.. |.++-.-...-|.-.||..|-..|
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEE
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEe
Confidence 3466789999885 443311111125555666554443
No 172
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=34.07 E-value=9.6 Score=18.77 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=9.5
Q ss_pred Cccccccccccccc
Q psy12455 90 RTCPMCKMDILKHY 103 (152)
Q Consensus 90 ~~CP~Cr~~~~~~~ 103 (152)
..||+|+..++...
T Consensus 4 ~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 4 FCCPKCQYQAPDMD 17 (28)
T ss_dssp EECTTSSCEESSHH
T ss_pred ccCccccccCcChH
Confidence 36888887765543
No 173
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.04 E-value=40 Score=20.45 Aligned_cols=41 Identities=22% Similarity=0.575 Sum_probs=29.0
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
...|.-|-+.+...+. +..-+..||..|+ .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCCC--------eeCCCCCCCCCC
Confidence 4569999998876543 3456788998874 577887777554
No 174
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=32.83 E-value=27 Score=19.85 Aligned_cols=42 Identities=19% Similarity=0.520 Sum_probs=29.5
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
...|..|...+...+.++. .=+..||..|+ .|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 3469999998876553332 35678898875 688888887654
No 175
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=32.34 E-value=8.4 Score=22.25 Aligned_cols=39 Identities=23% Similarity=0.693 Sum_probs=23.5
Q ss_pred CccccccccCccCCCcEEEec-----CC-CcccHhhHHHHHhC----CCccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILP-----CK-HEYHKNCIDPWLLE----HRTCPMCKM 97 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lp-----C~-H~fh~~Ci~~w~~~----~~~CP~Cr~ 97 (152)
...| ||..... + .++- |. ..||..|+. +.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g---~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G---EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S---EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C---CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4446 8987532 3 2333 33 579999997 333 226888854
No 176
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=31.85 E-value=7.8 Score=21.59 Aligned_cols=41 Identities=17% Similarity=0.407 Sum_probs=23.0
Q ss_pred ccccCccCCCcEEEecCCCcccHhhHHHHHh---CCCccccccc
Q psy12455 57 ICIEFYKPSDIVRILPCKHEYHKNCIDPWLL---EHRTCPMCKM 97 (152)
Q Consensus 57 IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~---~~~~CP~Cr~ 97 (152)
||.........+.--.|..-||..|+.---. ....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544222222223888899999853221 2347888864
No 177
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.30 E-value=15 Score=21.92 Aligned_cols=38 Identities=26% Similarity=0.526 Sum_probs=26.1
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
...|..|-+.+... .+..-+..||..|+ .|..|+..|.
T Consensus 15 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDR---ILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSC---CEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecce---eEEECCccccHHhc--------CcccCCCccC
Confidence 34688888877632 33335778887774 6888888775
No 178
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.87 E-value=21 Score=21.09 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=26.4
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
..|..|.+.+... .+..-+..||..|+ .|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLEN---YLSAMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCSS---CEEETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecce---eEEECCCeEecCcC--------ChhhCCCCCCCC
Confidence 3588888877653 23335677887774 688888877553
No 179
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.59 E-value=15 Score=21.92 Aligned_cols=41 Identities=17% Similarity=0.491 Sum_probs=27.1
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 102 (152)
...|..|-+.+...+. +..-+..||..|+ .|-.|+.+|...
T Consensus 7 ~~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCCCC
Confidence 3459999888765543 3336778887774 577887777544
No 180
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=30.50 E-value=13 Score=21.62 Aligned_cols=42 Identities=21% Similarity=0.608 Sum_probs=23.8
Q ss_pred CccccccccCccCCCcEEEec--CC-CcccHhhHHHHHhC----CCccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILP--CK-HEYHKNCIDPWLLE----HRTCPMCKM 97 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lp--C~-H~fh~~Ci~~w~~~----~~~CP~Cr~ 97 (152)
...| ||..... ++.+.-=. |. .-||..|+. +.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4446 8988532 32111112 44 789999996 222 236998864
No 181
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=29.76 E-value=23 Score=20.66 Aligned_cols=40 Identities=18% Similarity=0.451 Sum_probs=27.3
Q ss_pred ccccccccCccC---CCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 53 ECCAICIEFYKP---SDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 53 ~~C~IC~~~~~~---~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
..|.-|-+.+.. ... .+..=+..||..|+ .|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCCCC
Confidence 459999888774 212 33335778998774 68899888754
No 182
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.48 E-value=16 Score=23.54 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=24.5
Q ss_pred ccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 53 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
..|++|..++... =++.+|..|-.. +.....||-|.++|..
T Consensus 33 ~~CP~Cq~eL~~~-------g~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQD-------NGHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEE-------TTEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceec-------CCEEECccccch-hhccccCcchhhHHHH
Confidence 5699998876422 122335555322 2334579999988754
No 183
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.04 E-value=23 Score=23.28 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=28.5
Q ss_pred CccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCcccccccccc
Q psy12455 52 GECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDIL 100 (152)
Q Consensus 52 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 100 (152)
...|.-|-+.+.... ++..-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE--EEEeCCcEEccccc--------CcCcCCCccc
Confidence 356999998876542 23336788998884 6999998886
No 184
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=28.85 E-value=3.6 Score=25.59 Aligned_cols=41 Identities=24% Similarity=0.599 Sum_probs=24.7
Q ss_pred ccccccCccC--CCcEEEec-CCCcccHhhHHHHHhCCC--ccccc
Q psy12455 55 CAICIEFYKP--SDIVRILP-CKHEYHKNCIDPWLLEHR--TCPMC 95 (152)
Q Consensus 55 C~IC~~~~~~--~~~~~~lp-C~H~fh~~Ci~~w~~~~~--~CP~C 95 (152)
|+-|-..+.. ....+.-| |++.||..|-..|=+.+. +|..-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHH
Confidence 7766554321 12224556 999999999988733333 56544
No 185
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=26.99 E-value=26 Score=20.52 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=25.3
Q ss_pred CCccccccccCccCCCcEEEe---cCCCcccHhhHHHHH---h-----CCCccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL---PCKHEYHKNCIDPWL---L-----EHRTCPMCKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l---pC~H~fh~~Ci~~w~---~-----~~~~CP~Cr~ 97 (152)
+...| ||......+. ++.- .|..-||..|+.--- . .+..||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 33446 7976554442 2222 277789999973110 0 1346999974
No 186
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.70 E-value=22 Score=24.99 Aligned_cols=9 Identities=33% Similarity=1.047 Sum_probs=4.2
Q ss_pred ccccccccc
Q psy12455 91 TCPMCKMDI 99 (152)
Q Consensus 91 ~CP~Cr~~~ 99 (152)
.|-.|...|
T Consensus 99 ~C~~C~~~L 107 (188)
T 1rut_X 99 TCSTCRNRL 107 (188)
T ss_dssp BCTTTCCBC
T ss_pred eECCCCCCC
Confidence 344554444
No 187
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=23.29 E-value=4.9 Score=18.88 Aligned_cols=11 Identities=36% Similarity=1.138 Sum_probs=7.2
Q ss_pred cccHhhHHHHH
Q psy12455 76 EYHKNCIDPWL 86 (152)
Q Consensus 76 ~fh~~Ci~~w~ 86 (152)
.||..|-+.|+
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 46777766665
No 188
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.92 E-value=34 Score=21.19 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=7.7
Q ss_pred ccccccccCccC
Q psy12455 53 ECCAICIEFYKP 64 (152)
Q Consensus 53 ~~C~IC~~~~~~ 64 (152)
..|+.|..++..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 347788776643
No 189
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.66 E-value=51 Score=20.98 Aligned_cols=38 Identities=8% Similarity=-0.095 Sum_probs=21.9
Q ss_pred CCccccccccCccC-CCcEEEecCCCcccHhhHHHHHhCC
Q psy12455 51 DGECCAICIEFYKP-SDIVRILPCKHEYHKNCIDPWLLEH 89 (152)
Q Consensus 51 ~~~~C~IC~~~~~~-~~~~~~lpC~H~fh~~Ci~~w~~~~ 89 (152)
+-+.|..|...|.. +.. ....=+..||..|..+-+..+
T Consensus 29 ~CF~C~~C~~~L~~~g~~-~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TTCCCSSSCSCCCCSSSC-CCCBTTBCCCHHHHHHHHTSC
T ss_pred hcCcccccCCchhcCCCe-eEEECCeeechHHHHHHhCcc
Confidence 55677788777653 111 222245677887776655443
No 190
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.55 E-value=86 Score=20.02 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=32.8
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHHHHhCCCccccccccccc
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 101 (152)
+-+.|..|...|... .....=+..||..|.... ....|..|..++..
T Consensus 29 ~CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGE--IYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTS--EEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcC--EEEeECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 456788888887643 233346778888887653 35679999988874
No 191
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.06 E-value=1.2e+02 Score=18.76 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=18.4
Q ss_pred CCccccccccCccC--CCcEEEecCCCcccH
Q psy12455 51 DGECCAICIEFYKP--SDIVRILPCKHEYHK 79 (152)
Q Consensus 51 ~~~~C~IC~~~~~~--~~~~~~lpC~H~fh~ 79 (152)
....|..|...+.. + ..-.|+..||.
T Consensus 24 ~~~rC~~C~kkvgl~~~---f~CrCg~~FC~ 51 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATS---FECRCGNNFCA 51 (85)
T ss_dssp CCCBCSSSCCBCSSSSC---EECTTCCEECT
T ss_pred cCccchhhCCeecccCC---eEcCCCCEecc
Confidence 34679999886543 3 44469999986
No 192
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=21.69 E-value=47 Score=20.85 Aligned_cols=41 Identities=20% Similarity=0.470 Sum_probs=24.3
Q ss_pred CCccccccccCccCCCcEEEe--cCC---CcccHhhHHHHHhC----CCcccc-ccc
Q psy12455 51 DGECCAICIEFYKPSDIVRIL--PCK---HEYHKNCIDPWLLE----HRTCPM-CKM 97 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~l--pC~---H~fh~~Ci~~w~~~----~~~CP~-Cr~ 97 (152)
+...| ||..... ++ ++. .|. .-||..|+. |.. .-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~--MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GP--MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SS--EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CC--EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34457 9987533 32 222 244 579999985 222 236999 864
No 193
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=20.79 E-value=4.6 Score=21.68 Aligned_cols=16 Identities=25% Similarity=0.802 Sum_probs=12.8
Q ss_pred HhhHHHHHhCCCcccc
Q psy12455 79 KNCIDPWLLEHRTCPM 94 (152)
Q Consensus 79 ~~Ci~~w~~~~~~CP~ 94 (152)
..||..|++++++|-.
T Consensus 18 mkCiyAWYnqq~sCq~ 33 (43)
T 2roo_A 18 YNCVYAWYNQQSSCER 33 (43)
T ss_dssp CEEEECGGGSSEEEEC
T ss_pred HHHHHHHHccCCchhh
Confidence 4688899999988854
No 194
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=20.11 E-value=1.5e+02 Score=17.59 Aligned_cols=34 Identities=15% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCccccccccCccCCCcEEEecCCCcccHhhHHH
Q psy12455 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDP 84 (152)
Q Consensus 51 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~ 84 (152)
.+..|.+|.+.-..+-....+-|.-.||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 4567999976421122235566999999999876
Done!