RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12455
(152 letters)
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 97.8 bits (244), Expect = 6e-28
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 28 AAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL 87
+ + ++P+ + + C +C+ ++ ++R+LPC HE+H C+D WL
Sbjct: 1 GSSGSSGQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK 58
Query: 88 EHRTCPMCKMDILKHYG 104
+RTCP+C+ D G
Sbjct: 59 ANRTCPICRADSGPSSG 75
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 94.3 bits (235), Expect = 2e-26
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 28 AAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLL 87
A+K+++ +P + + G CC IC Y D+ LPC H +HK C+ WL
Sbjct: 17 ASKESIDALPEILVTEDHGA-VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75
Query: 88 EHRTCPMCK 96
+ TCP+C+
Sbjct: 76 KSGTCPVCR 84
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 92.4 bits (230), Expect = 7e-26
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 42 KGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
GE+ E C IC+ + + VR LPC H +H+ C+D WL+ ++ CP+C++DI
Sbjct: 4 DGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 91.8 bits (228), Expect = 1e-25
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 44 EDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101
+ E CA+C+E +KP D + I PCKH +H+ C+ WL + CP+C M +L+
Sbjct: 7 GKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 87.9 bits (218), Expect = 5e-24
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 45 DKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
+E G G C +C E Y + VR LPC H +H +CI PWL +H +CP+C+ +
Sbjct: 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 78.2 bits (193), Expect = 2e-20
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 44 EDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101
+ D E C IC++ ILPC H + + CID W HR CP+C++ +
Sbjct: 7 GRVKQLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 72.6 bits (179), Expect = 2e-18
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 49 SGDGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDIL 100
DG CA+C+ + + R LP C H +H C+D WL H TCP+C++ ++
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 70.4 bits (173), Expect = 2e-17
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 55 CAICIEFYKPSD-IVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
C IC+E S + +LPC H H+ C + L E CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 67.4 bits (165), Expect = 3e-16
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 48 ISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
++ E C IC+E PS+ LPC H + CI W+ ++ TCP+CK+ +
Sbjct: 1 MATVAERCPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 56.1 bits (135), Expect = 1e-11
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 53 ECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDI 99
+ C C K D V + C H +H C+ W+ ++ CP+C+ D
Sbjct: 27 DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 54.1 bits (130), Expect = 5e-11
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 55 CAICIEFYK----PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
C IC++ Y ++ C H + C+ L TCP C+ I
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 50.2 bits (120), Expect = 2e-09
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 55 CAICIEFYK----PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102
C IC++ Y ++ C H + C+ L TCP C+ I
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 49.4 bits (118), Expect = 3e-09
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 55 CAICIEFYK----PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102
C IC++ Y ++ C H + C+ L TCP C+ I
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 47.8 bits (114), Expect = 2e-08
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101
C+IC + D I C H + K+CI CP C + + +
Sbjct: 18 CSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 49.4 bits (117), Expect = 7e-08
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 31 KALSKIPTKHIKGEDK------EISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDP 84
P HIK + E+ + C IC E K V+I PC H +C+
Sbjct: 305 GLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTS 361
Query: 85 WLL-EHRTCPMCKMDILKH 102
W E + CP C+ +I
Sbjct: 362 WQESEGQGCPFCRCEIKGT 380
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 46.0 bits (109), Expect = 8e-08
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 43 GEDKEISGDGECCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
+ S CAIC++ P LPCKH + C+ + C +C+ +I
Sbjct: 6 SGNTAPSLTVPECAICLQTCVHPV----SLPCKHVFCYLCVKGASWLGKRCALCRQEI 59
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 46.7 bits (111), Expect = 9e-08
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILK 101
C +C ++ D I+ C H + K CI +L + CP+C + + K
Sbjct: 17 MCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 43.7 bits (103), Expect = 9e-07
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILKH 102
C IC+E + D C +CI WL E R CP C+ +
Sbjct: 25 CFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 43.7 bits (102), Expect = 1e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMC 95
C A V C H +H +CI WL + CP+
Sbjct: 54 CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 42.1 bits (99), Expect = 2e-06
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 55 CAICIEFYK-PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
C IC + ++ P + C+H + ++C C +C
Sbjct: 18 CFICRQAFQNPV----VTKCRHYFCESCALEHFRATPRCYICDQPT 59
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 42.5 bits (99), Expect = 5e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMC 95
C A V C H +H +CI WL + CP+
Sbjct: 65 CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 41.7 bits (98), Expect = 6e-06
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
C IC E++ + I C H Y CI +L CP C + +
Sbjct: 24 RCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 41.6 bits (97), Expect = 1e-05
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 8 SKTGKEKVQLTDVKQRRLCSAAKKALSKIPTKHIKGED-KEISGDGECCAICIE-FYKPS 65
+++ K+ + K + L ++ K ++ + C IC E F +
Sbjct: 19 NRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAV 78
Query: 66 DIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
L C H + CI+ W+ CP+C+ DI
Sbjct: 79 ----TLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 40.6 bits (94), Expect = 2e-05
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 53 ECCAICIE---------------FYKPSDIVRILPCKHEYHKNCIDPWLLE-----HRTC 92
E C IC+E P + R+ C H +H C+ C
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQC 85
Query: 93 PMCK 96
P CK
Sbjct: 86 PSCK 89
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 41.4 bits (96), Expect = 4e-05
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 17/72 (23%)
Query: 44 EDKEISGDGECCAICIEFYKPSDIVRI-----LPCKHEYHKNCIDPWL-----------L 87
D+E + + C IC + V + C + H C++ W +
Sbjct: 301 LDEEDNEELRCN-ICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEV 359
Query: 88 EHRTCPMCKMDI 99
CP CK +
Sbjct: 360 SFGQCPFCKAKL 371
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 38.4 bits (89), Expect = 6e-05
Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 4/44 (9%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH--RTCPMCK 96
C IC C H C+ + + CP C
Sbjct: 18 CNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 59
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 36.3 bits (84), Expect = 4e-04
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE--HRTCPMCK 96
C IC + D V I C + Y CI LLE TCP C
Sbjct: 17 LCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 36.7 bits (84), Expect = 6e-04
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 55 CAICIEFYK----PSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFVILAH 110
C IC++ Y ++ C H + C+ L TCP C+ I I
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69
Query: 111 SPLVTTRLKQ 120
S V+ +
Sbjct: 70 SGTVSCPICM 79
Score = 33.2 bits (75), Expect = 0.012
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 33 LSKIPTKHIKGEDKEISGDGECCAICIEFYK----PSDIVRILPCKHEYHKNCIDPWLLE 88
+ H + I C IC++ Y ++ C H + C+ L
Sbjct: 53 TCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 112
Query: 89 HRTCPMCK 96
TCP C+
Sbjct: 113 ANTCPTCR 120
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 35.5 bits (82), Expect = 9e-04
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH--RTCPMCK 96
C IC + D V I C + Y CI LLE TCP C
Sbjct: 15 LCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 57
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 37.0 bits (85), Expect = 0.001
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 4/45 (8%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR--TCPMCK 96
C IC C H C+ + + CP C
Sbjct: 182 ICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 224
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 35.8 bits (82), Expect = 0.001
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 54 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDILKHY 103
C C E Y+P C H K+C+ + +CP C+ D+ ++Y
Sbjct: 80 MCVCCQELVYQPV----TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 33.7 bits (77), Expect = 0.004
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH--------RTCPMCK 96
C +C+ Y + I C+ + C+ ++ +CP
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 32.8 bits (75), Expect = 0.005
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 54 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILK 101
C C P + C H + ++C+ L C C+ I+K
Sbjct: 17 KCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3
ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2
PDB: 1n87_A
Length = 61
Score = 32.7 bits (75), Expect = 0.006
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCK 96
CAI + P V + + K+ ++ ++ + P+
Sbjct: 5 LCAISGKV--PRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITN 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 33.7 bits (77), Expect = 0.007
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 54 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCKMDILKHYGFVILAHS 111
C IC+E +P LPC H K C + + CP C+ + + +S
Sbjct: 17 QCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNS 72
Query: 112 PLVTT 116
+
Sbjct: 73 LVNVE 77
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 33.7 bits (77), Expect = 0.007
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCK 96
C+ C + + V + C+H + NC+ + CP+C
Sbjct: 24 RCSRCTNILR--EPVCLGGCEHIFCSNCVSDCI--GTGCPVCY 62
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 33.8 bits (77), Expect = 0.007
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 54 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCK 96
C C E ++P C+H K+C+D +CP C+
Sbjct: 54 QCICCQELVFRPI----TTVCQHNVCKDCLDRSFRAQVFSCPACR 94
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 33.8 bits (77), Expect = 0.009
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDILK 101
C IC++ K + + C H + +CI L ++ CP C+ ++
Sbjct: 56 MCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 32.8 bits (75), Expect = 0.009
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 55 CAICIEFYKPSDIV-RILPCKHEYHKNCIDPWLLEHR---TCPMCK 96
C IC+E + + ++L C H + C++ L CP C
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 32.4 bits (73), Expect = 0.011
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 51 DGECCAICIEFYKPSDI-VRILPCKHEYHKNCIDPWLLEHRT-CPMCK 96
D C +C+E + DI C ++ + C + CP C+
Sbjct: 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 57
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 34.0 bits (77), Expect = 0.014
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 97
+ K D V + K ++ I LL T P +M
Sbjct: 893 LDPLMYTIMK--DPVILPASKMNIDRSTIKAHLLSDSTDPFNRM 934
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 31.2 bits (71), Expect = 0.018
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCK 96
C C K ++LPC H C++ ++ CP+C+
Sbjct: 8 RCQQCQAEAKCP---KLLPCLHTLCSGCLEASGMQ---CPICQ 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 31.2 bits (71), Expect = 0.030
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 70 ILPCKHEYHKNCIDPWLLEHRTCPMCKM 97
LP ++ I LL T P +
Sbjct: 29 RLPSGTVMDRSIILRHLLNSPTDPFNRQ 56
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 30.0 bits (68), Expect = 0.062
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT---CPMCK 96
C IC++ + V + C H + CI CP+CK
Sbjct: 22 ICPICLDILQ--KPV-TIDCGHNFCLKCITQIGETSCGFFKCPLCK 64
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 30.5 bits (69), Expect = 0.067
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 97
+ D V LP ++ I LL T P +
Sbjct: 31 RDPLMDTLMT--DPV-RLPSGTIMDRSIILRHLLNSPTDPFNRQ 71
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 29.9 bits (68), Expect = 0.072
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT-------CPMCK 96
C IC+E + + L C H + CI E T CP+C
Sbjct: 14 TCPICLELLT--EPL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG 60
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 29.5 bits (66), Expect = 0.086
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 51 DGECCAIC--IEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCKMDILK 101
D + C C ++ PS + + C H ++C+D + CP C + K
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 29.2 bits (66), Expect = 0.088
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT---CPMC 95
C++C+E+ K + V I+ C H + K CI W + CP+C
Sbjct: 17 SCSVCLEYLK--EPV-IIECGHNFCKACITRWWEDLERDFPCPVC 58
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 30.0 bits (68), Expect = 0.089
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT------CPMCK 96
C IC+E K + V C H + + CI +R CP+C+
Sbjct: 21 TCPICLELLK--EPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 30.1 bits (68), Expect = 0.11
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCK 96
C IC+E K + V C H + K C+ L + + CP+CK
Sbjct: 23 ECPICLELIK--EPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 29.8 bits (66), Expect = 0.12
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 54 CCAIC---IEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDILK 101
C C I+ Y R++PCKH + +C + + CP C + +
Sbjct: 3 FCDKCGLPIKVY-----GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.18
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 34/95 (35%)
Query: 69 RILPCKHEYHKNCI-------DPWLLEH---RTCPMCKMDILKHYGFVILAHSPLVTTRL 118
R+L K + ++NC+ + CK+ L+TTR
Sbjct: 236 RLL--KSKPYENCLLVLLNVQNAKAWNAFNLS----CKI---------------LLTTRF 274
Query: 119 KQPLNSPYEAKCT-PNSKHSEQKFDPAGNQTRDLC 152
KQ + A T + H P + + L
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLL 307
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 30.3 bits (67), Expect = 0.20
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 36 IPTKHIKGEDKEISGDGE----CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-- 89
IP ++ ++ +G C I + Y+ + C H + ++ I +L +
Sbjct: 161 IPDLQNPADEDDLQIEGGKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTT 218
Query: 90 RTCPM 94
R CP
Sbjct: 219 RDCPQ 223
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 28.1 bits (63), Expect = 0.29
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT---CPMC 95
C IC++ + V + C H + CI CP+C
Sbjct: 22 ICPICLDILQ--KPV-TIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 28.7 bits (64), Expect = 0.34
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCK 96
C IC D V CKH + + CI L CP C+
Sbjct: 25 SCQICEHILA--DPVET-SCKHLFCRICILRCLKVMGSYCPSCR 65
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 28.0 bits (63), Expect = 0.39
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCI------DPWLLEHRTCPMCK 96
C IC+E + L C H + + C+ +CP+C+
Sbjct: 21 TCPICLELLT--QPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR
{Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Length = 175
Score = 28.5 bits (63), Expect = 0.64
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 88 EHRTCPMCKMDILKHYGFV 106
C+M++L+H G
Sbjct: 17 PETLGHYCQMNLLEHPGPK 35
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 26.6 bits (59), Expect = 0.89
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 51 DGECCAICIEFYKPSDIVRILPCK-----HEYHKNCIDPWLLEHR--TCPMCK 96
D C IC E R C H++C+ WL R C +C
Sbjct: 5 DVPVCWICNE---ELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 27.5 bits (61), Expect = 0.93
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 54 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCK 96
C IC+ + PC H + K CI + + CP+
Sbjct: 20 ECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDN 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 27.8 bits (61), Expect = 1.0
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 6/80 (7%)
Query: 54 CCAICIE-FYKPSDIVRILPCKHEYHKNCIDPWLLEH-RTCPMCKMDILKHYGFVILAHS 111
C+ C +P C H Y C+ L + C C + + G IL S
Sbjct: 33 LCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESS 88
Query: 112 PLVTTRLKQPLNSPYEAKCT 131
+ A C
Sbjct: 89 SAFPDNAARREVESLPAVCP 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.2
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 40/109 (36%)
Query: 60 EFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH----YGFVILA---HSP 112
+ YK S + D W + D H YGF IL ++P
Sbjct: 1634 DLYKTSKAAQ-------------DVW--N-------RAD--NHFKDTYGFSILDIVINNP 1669
Query: 113 LVTT---------RLKQPLNSPYEAKCTPNSKHSEQKFDPAGNQTRDLC 152
+ T R+++ ++ +E+ F +
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme,
KIAA0126, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.2
Length = 98
Score = 27.0 bits (60), Expect = 1.3
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 97
I D V + + ++ I LL +T P +
Sbjct: 24 LDPIMSTLMC--DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRS 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 26.8 bits (59), Expect = 1.6
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR------TCPM--CKMDILKH 102
C I E K V+ C H Y ++ I + + CP C ++
Sbjct: 10 CPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 25.9 bits (57), Expect = 2.0
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 44 EDKEISGDGECCAICIEFYKPSDIVRILPCKHEYH-KNCIDPWLLEHRTCPMCKMDI 99
+ + + C +C + V +LPC+H C+ + CPMC+ +
Sbjct: 7 GVEPSEENSKDCVVCQN--GTVNWV-LLPCRHTCLCDGCVK----YFQQCPMCRQFV 56
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding,
nucleus, phosphorylation, chromatin regulator, UBL
conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo
sapiens}
Length = 159
Score = 26.8 bits (59), Expect = 2.2
Identities = 3/27 (11%), Positives = 6/27 (22%), Gaps = 7/27 (25%)
Query: 71 LPCKHEYHKNCIDPWLLEHRTCPMCKM 97
+ H +H + P
Sbjct: 1 MGSSHHHHHHS-------SGLVPRGST 20
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all
beta, structural genomics, protein structure
initiative; NMR {Streptomyces coelicolor}
Length = 56
Score = 25.5 bits (57), Expect = 2.3
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 82 IDPWLLEHRTCPMCK 96
++ LLE CP C
Sbjct: 3 LEAGLLEILACPACH 17
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 25.9 bits (57), Expect = 2.3
Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 38 TKHIKGEDKEISGDGECCAICIEFYKPSDIVRILPCKHEYH-KNCIDPWLLEHRTCPMCK 96
T+ ++ + +++ + C +C E + + PC H ++C + ++CP+C+
Sbjct: 5 TRVLQEKLRKLK-EAMLCMVCCE--EEINST-FCPCGHTVCCESCAA----QLQSCPVCR 56
Query: 97 MDI 99
+
Sbjct: 57 SRV 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 27.0 bits (59), Expect = 2.5
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR-TCPMCK 96
C IC+ + PC H + K CI + + CP+
Sbjct: 20 ECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDN 60
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 27.0 bits (60), Expect = 3.2
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 17 LTDVKQRRLCSAAKKALSKIPTKHIK 42
T +QR + LSK+ +I+
Sbjct: 515 QTPFEQRHIVDGFSFELSKVVRPYIR 540
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR
{Rattus norvegicus} SCOP: j.12.1.1
Length = 53
Score = 24.8 bits (54), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 9 KTGKEKVQLTDVKQRRLCSAAKKALSKIPTKHIK 42
K G + + +T+ +Q++ +A KK SK P K I
Sbjct: 9 KFGGQDIFMTE-EQKKYYNAMKKLGSKKPQKPIP 41
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 25.2 bits (55), Expect = 3.8
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYH-KNCIDPWLLEHRTCPMCKMDI 99
C++C + + +I+ H +C +CP+CK +I
Sbjct: 10 CSLCEKRPRDGNII-HGRTGHLVTCFHCARRLKKAGASCPICKKEI 54
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics,
PSI-2, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: b.171.1.1
Length = 67
Score = 24.9 bits (55), Expect = 3.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 82 IDPWLLEHRTCPMCK 96
+DP LLE CP K
Sbjct: 3 LDPQLLEVLACPKDK 17
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes
structural genomics, PSI-2, protein structure
initiative; 1.90A {Chromobacterium violaceum} SCOP:
b.171.1.1
Length = 68
Score = 24.9 bits (55), Expect = 4.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 82 IDPWLLEHRTCPMCK 96
+D LE CP+CK
Sbjct: 1 MDAKFLEILVCPLCK 15
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 26.4 bits (59), Expect = 4.8
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 17 LTDVKQRRLCSAAKKALSKIPTKHIK 42
+T+ +Q L + L ++ ++
Sbjct: 431 MTEEEQMALLNNLVNDLQQVRHENTV 456
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 26.2 bits (58), Expect = 4.9
Identities = 2/26 (7%), Positives = 11/26 (42%)
Query: 17 LTDVKQRRLCSAAKKALSKIPTKHIK 42
++ ++++ + +A L +
Sbjct: 453 MSPIEKQHMINAFGFELDHCEDPVVY 478
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 26.2 bits (58), Expect = 5.0
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 17 LTDVKQRRLCSAAKKALSKIPTKHIK 42
LT V+Q+ + +A + S + + +K
Sbjct: 458 LTPVEQQFVINAIRFEASHVTNEQVK 483
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI,
structure initiative, northeast structural genomics
consort NESG; NMR {Neisseria meningitidis}
Length = 68
Score = 24.5 bits (54), Expect = 5.4
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 82 IDPWLLEHRTCPMCK 96
++ L+ CP+ K
Sbjct: 1 MEKKFLDILVCPVTK 15
>2pk7_A Uncharacterized protein; NESG, PLR1, putative
tetraacyldisaccharide-1-P 4-kinase, Q4K structural
genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP:
b.171.1.1
Length = 69
Score = 24.6 bits (54), Expect = 5.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 82 IDPWLLEHRTCPMCK 96
+D LL+ CP+CK
Sbjct: 1 MDTKLLDILACPICK 15
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics
consortium, beta, PSI-2, protein structure initiative;
NMR {Bordetella bronchiseptica RB50}
Length = 70
Score = 24.5 bits (54), Expect = 6.5
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 82 IDPWLLEHRTCPMCK 96
++ LL+ CP+CK
Sbjct: 1 MESRLLDILVCPVCK 15
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 24.3 bits (53), Expect = 7.6
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 51 DGECCAICIEFYKPSDIVRILPCKHEYH-KNCIDPWLLEHRTCPMCKMDI 99
+ + C IC++ + IV +PC H K C + CPMC I
Sbjct: 24 EEKLCKICMD--RNIAIV-FVPCGHLVTCKQCAE----AVDKCPMCYTVI 66
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 25.6 bits (57), Expect = 8.1
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 17 LTDVKQRRLCSAAKKALSKIPTKHIK 42
L ++ L + +L ++ + I
Sbjct: 427 LPSEEKENLINNIAASLGQVKNQEII 452
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 24.9 bits (54), Expect = 8.1
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 51 DGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE----HRTCPMCK 96
+ + C C + + S ++ C YH C+ P + C C+
Sbjct: 53 ECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCR 102
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 25.6 bits (57), Expect = 8.4
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 17 LTDVKQRRLCSAAKKALSKIPTKHIK 42
L ++ RL ++L+ + K I
Sbjct: 436 LPADEKERLHDTIGESLAHVTHKEIV 461
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.436
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,250,001
Number of extensions: 122735
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 120
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)