RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12455
(152 letters)
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 63.4 bits (154), Expect = 4e-15
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 51 DGECCAICIEFYKPSDIVRILP-CKHEYHKNCIDPWLLEHRTCPMCKMDIL 100
DG CA+C+ + + R LP C H +H C+D WL H TCP+C++ ++
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 56.1 bits (135), Expect = 3e-12
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 48 ISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
++ E C IC+E + LPC H + CI W+ ++ TCP+CK+ +
Sbjct: 1 MATVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 49.6 bits (118), Expect = 1e-09
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 46 KEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLE-HRTCPMCKMDI 99
E+ + C IC E K V+I PC H +C+ W + CP C+ +I
Sbjct: 17 CEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 49.4 bits (117), Expect = 2e-09
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
C A V C H +H +CI WL + CP+ +
Sbjct: 38 CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 83
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 41.0 bits (96), Expect = 1e-06
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
C C K ++LPC H C++ CP+C+
Sbjct: 9 CQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 41.3 bits (96), Expect = 1e-06
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 51 DGECCAICIEFYKPSDIVRIL--PCKHEYHKNCIDPWLLE-HRTCPMCKMDILK 101
D + C C + ++++ C H ++C+D + CP C + K
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 41.9 bits (97), Expect = 3e-06
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 45 DKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-----LEHRTCPMCKMDI 99
+K G + P + R+ C H +H C+ CP CK
Sbjct: 33 EKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 39.3 bits (91), Expect = 1e-05
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 49 SGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR--------TCPMCK 96
S C +C+ Y + I C+ + C+ ++ +CP
Sbjct: 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 37.8 bits (87), Expect = 2e-05
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 55 CAICIEFYKPSDIV-RILPCKHEYHKNCIDPWL-LEHRTCPMCKMDI 99
C +C+E + DI C ++ + C E+ CP C+
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 38.1 bits (88), Expect = 4e-05
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHR---TCPMCKMDI 99
C IC+E K C H + K C+ L + + CP+CK DI
Sbjct: 24 CPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 36.4 bits (83), Expect = 9e-05
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 51 DGECCAICIEFYKPSDIV--RILPCKHEYHKNCIDPWLLEH--RTCPMCK 96
D C IC E H++C+ WL C +C
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 33.3 bits (76), Expect = 0.002
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWL-LEHRTCPMCKMDI 99
C IC CKH + + CI L + CP C+
Sbjct: 25 SCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 32.8 bits (74), Expect = 0.004
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
C+ C + V + C+H + NC+ + CP+C
Sbjct: 24 RCSRCTNILRE--PVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPA 65
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 30.5 bits (68), Expect = 0.011
Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDI 99
CAI + + V + + K+ ++ ++ + P+ +
Sbjct: 2 LCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 45
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 27.4 bits (60), Expect = 0.27
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 54 CCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKH 102
C I +E K D V I+ Y ++ I WL + L H
Sbjct: 10 RCPISLELMK--DPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55
>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
1351]}
Length = 474
Score = 25.2 bits (55), Expect = 4.1
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 17 LTDVKQRRLCSAAKKALSKIPTKHIK 42
L ++ L + +L ++ + I
Sbjct: 424 LPSEEKENLINNIAASLGQVKNQEII 449
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 25.3 bits (55), Expect = 4.4
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 17 LTDVKQRRLCSAAKKALSKIPTKHIK 42
L ++ RL ++L+ + K I
Sbjct: 436 LPADEKERLHDTIGESLAHVTHKEIV 461
>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 418
Score = 25.0 bits (54), Expect = 4.7
Identities = 8/57 (14%), Positives = 12/57 (21%), Gaps = 4/57 (7%)
Query: 53 ECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFVILA 109
E S+ C H K I + V++A
Sbjct: 175 GVAGSHWEDQLASEK----KCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIA 227
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 24.9 bits (54), Expect = 4.8
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 17 LTDVKQRRLCSAAKKALSKIPTKHIK 42
T +QR + LSK+ +I+
Sbjct: 489 QTPFEQRHIVDGFSFELSKVVRPYIR 514
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 23.4 bits (50), Expect = 6.0
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 50 GDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT----CPMCKMDILK 101
G C +++ C YH +C++P L E CP C LK
Sbjct: 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59
>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 59
Score = 23.0 bits (50), Expect = 7.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 82 IDPWLLEHRTCPMCK 96
+DP LLE CP K
Sbjct: 3 LDPQLLEVLACPKDK 17
>d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia
coli [TaxId: 562]}
Length = 116
Score = 23.9 bits (51), Expect = 7.2
Identities = 7/54 (12%), Positives = 16/54 (29%)
Query: 44 EDKEISGDGECCAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRTCPMCKM 97
E++ I G GEC + ++ + + + L+
Sbjct: 38 EEEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGLTREELQKILPAGAAR 91
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 22.6 bits (48), Expect = 7.5
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 55 CAICIEFYKPSDIVRILPCKHEYHKNCIDPWLLEHRT----CPMCK 96
C +C + + ++ C +H C+ P L E CP C+
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId:
1831]}
Length = 317
Score = 24.4 bits (51), Expect = 8.0
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 2/133 (1%)
Query: 14 KVQLTDVKQRR--LCSAAKKALSKIPTKHIKGEDKEISGDGECCAICIEFYKPSDIVRIL 71
KV D+ R + L+ + + + G + I F P + +
Sbjct: 19 KVDFADLPNARATYDALIGAMLADLSFDGVSLRELSAPGLDGDPEVKIRFVTPDNTAGPV 78
Query: 72 PCKHEYHKNCIDPWLLEHRTCPMCKMDILKHYGFVILAHSPLVTTRLKQPLNSPYEAKCT 131
P H E ++ + + + T P+N Y A
Sbjct: 79 PVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPETTFPGPVNDCYAALLY 138
Query: 132 PNSKHSEQKFDPA 144
++ E DP+
Sbjct: 139 IHAHAEELGIDPS 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.436
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 580,450
Number of extensions: 27003
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 37
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)