BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12456
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 8/146 (5%)
Query: 18 PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW 77
PDG + D V++W+ Q ++ + + ++FS +G +A+A+D+ VKLW
Sbjct: 313 PDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Query: 78 DLRKLKNFKTLQLDPNYE--IRDLCFDQSGTYMAVAGTDVRVFLC-KQWQELAMFNEHTA 134
+ +N + LQ + +R + F G +A A D V L + Q L H++
Sbjct: 372 N----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 427
Query: 135 MVTGVRFGTHAHYLASSSMDRTLKLY 160
V GV F +AS+S D+T+KL+
Sbjct: 428 SVWGVAFSPDDQTIASASDDKTVKLW 453
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 18 PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW 77
PD + D V++W+ Q + + ++ ++FS +G +A+A+D+ VKLW
Sbjct: 436 PDDQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Query: 78 DLRKLKNFKTLQLDPNYE--IRDLCFDQSGTYMAVAGTDVRVFLC-KQWQELAMFNEHTA 134
+ +N + LQ + +R + F G +A A D V L + Q L H++
Sbjct: 495 N----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 550
Query: 135 MVTGVRFGTHAHYLASSSMDRTLKLY 160
V GV F +AS+S D+T+KL+
Sbjct: 551 SVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
PDG + D V++W+ Q + + + ++FS +G +A+A+D+ VK
Sbjct: 270 FRPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328
Query: 76 LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLC-KQWQELAMFNEHTA 134
LW+ R ++ +TL + + + F G +A A D V L + Q L H++
Sbjct: 329 LWN-RNGQHLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 386
Query: 135 MVTGVRFGTHAHYLASSSMDRTLKLY 160
V GV F +AS+S D+T+KL+
Sbjct: 387 SVRGVAFSPDGQTIASASDDKTVKLW 412
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 18 PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW 77
PDG + D V++W+ Q + + + ++FS +G +A+A+D+ VKLW
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Query: 78 DLRKLKNFKTLQLDPNYE--IRDLCFDQSGTYMAVAGTDVRVFLC-KQWQELAMFNEHTA 134
+ +N + LQ + + + F G +A A D V L + Q L H++
Sbjct: 167 N----RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 222
Query: 135 MVTGVRFGTHAHYLASSSMDRTLKLY 160
V GV F +AS+S D+T+KL+
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLW 248
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 18 PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW 77
PDG + D V++W+ Q + + + ++F +G +A+A+D+ VKLW
Sbjct: 231 PDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 78 DLRKLKNFKTLQLDPNYE--IRDLCFDQSGTYMAVAGTDVRVFLC-KQWQELAMFNEHTA 134
+ +N + LQ + + + F G +A A D V L + Q L H++
Sbjct: 290 N----RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS 345
Query: 135 MVTGVRFGTHAHYLASSSMDRTLKLY 160
V GV F +AS+S D+T+KL+
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 53 IQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNY--EIRDLCFDQSGTYMAV 110
++ ++FS +G +A+A+D+ VKLW+ +N + LQ + + + F G +A
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 74
Query: 111 AGTDVRVFLC-KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
A D V L + Q L H++ V GV F +AS+S D+T+KL+
Sbjct: 75 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
+E H++ V GV F +AS+S D+T+KL+
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW 43
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 18 PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW 77
PDG G D ++IWD++ +K V Q I +L + +G L + + + V++W
Sbjct: 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Query: 78 DLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW---QELAMFNE- 131
DLR + TL ++ + G Y+A D VRV+ + + L NE
Sbjct: 193 DLRTGQCSLTLSIEDGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 251
Query: 132 ---HTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
H V V F + S S+DR++KL++L
Sbjct: 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 53 IQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG 112
I+++ FS +G +LAT A++ +++WD+ K LQ +I L + SG +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGS 184
Query: 113 TD--VRVFLCKQWQ-ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
D VR++ + Q L + E V G Y+A+ S+DR ++++
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG-DGKYIAAGSLDRAVRVW 234
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVT--DFQLDAG-----PIQALSFSENG 62
+TT + P DG G+ D V++WD + V D + ++G + ++ F+ +G
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 63 YYLATAADENCVKLWDLRKLKNFKTLQLDPN 93
+ + + + VKLW+L+ N K+ PN
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANN-KSDSKTPN 298
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 85
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LA+SS D+ +K++
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIW 53
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 290
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 88
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIW 56
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 293
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 88
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIW 56
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 293
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 88
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 278 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIW 56
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 293
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 87
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 88 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 145
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 118 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 177
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 178 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 218
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 216
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 217 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 276
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 277 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIW 55
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 257
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 258 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 292
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 104
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 105 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 162
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%)
Query: 15 QLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCV 74
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
Query: 75 KLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 235
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 293
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 294 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIW 72
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 274
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 309
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 81
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 82 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 139
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 112 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 171
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 172 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 212
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 151 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 210
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 270
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 271 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIW 49
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 251
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 252 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 286
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 82
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 113 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 272 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIW 50
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 287
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 83
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 84 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 141
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 114 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 173
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 174 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 214
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 212
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 272
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 273 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIW 51
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 253
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 254 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 288
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 106
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 107 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 164
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%)
Query: 15 QLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCV 74
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 138 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
Query: 75 KLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 198 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 237
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 235
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 295
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 296 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIW 74
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 276
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 78
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 79 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 136
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 109 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 168
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 169 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 209
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 148 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 207
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 267
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 268 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIW 46
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 248
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 249 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 283
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 85
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIW 53
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 290
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 82
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 113 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 272 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIW 50
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 287
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 85
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KLY
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIW 53
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 290
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 99
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K +
Sbjct: 100 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 157
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K K + + P+ A+ F+ +G + +++ +
Sbjct: 130 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 189
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 190 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 230
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 169 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 228
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 288
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 289 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIW 67
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 269
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 270 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 304
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 85
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K + + P+ A+ F+ +G + +++ +
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 215 LDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIW 53
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTAC 290
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
+++ + P+G ++D ++IW D K +K ++ +L I +++S + L +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 85
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
A+D+ +K+WD+ K KTL+ NY C + + V+G+ VR++ K
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
L H+ V+ V F + SSS D +++
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%)
Query: 14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC 73
+P + G+ D V+IWD+K + + P+ A+ F+ +G + +++ +
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
Query: 74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
++WD + KTL D N + + F +G Y+ A D
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAA 69
++ + DG + + D +IWD + + T D P+ + FS NG Y+ A
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTD---VRVFLCKQWQE 125
+N +KLWD K K KT N + F +G V+G++ V ++ + +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSM--DRTLKLY 160
+ HT +V + +AS+++ D+T+KL+
Sbjct: 275 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V+ V+F + +LASSS D+ +K++
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIW 53
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL--SFS-ENGYYL 65
P ++ + P+G T D+ +++WD K K + + + +FS G ++
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC 100
+ +++N V +W+L+ + + LQ + I C
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTAC 290
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
++T + PDG + G D V +WDL + K + + ++ I AL FS N Y+L AA
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNRYWLC-AAT 621
Query: 71 ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLC 120
E+ +K+WDL + L++D E D SG A T +V C
Sbjct: 622 EHGIKIWDLESKSIVEDLKVDLKAEAEKA--DNSGP----AATKRKVIYC 665
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
L DG G+ D ++++WDL + F + +++FS + + +A+ + +K
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 76 LWD 78
LW+
Sbjct: 498 LWN 500
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 60 ENGYYLATAADENCVKLWDLRKL-KNFKTLQ---LDPNYEIRDLCFDQSGTYMAVAGT-- 113
+N + +A+ + + LW L K K + Q ++ + D+ G + A++G+
Sbjct: 393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF-ALSGSWD 451
Query: 114 -DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
++R++ F HT V V F + S+S DRT+KL++
Sbjct: 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 5/157 (3%)
Query: 6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYL 65
+ P + PD + SD + +WDL Q V FQ + S +G L
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVA--GTDVRVFLCKQW 123
T +N V+ WDLR+ + + Q D +I L + +G ++AV ++V V +
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQ--QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK- 255
Query: 124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
+ + H + V ++F + S+ D L +
Sbjct: 256 PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP-IQALSFSENGYYLATAA 69
L T + PDG + G D Q +WDL + K++ + LD G I AL FS N Y+L AA
Sbjct: 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGDIINALCFSPNRYWLC-AA 274
Query: 70 DENCVKLWDLR 80
+K+WDL
Sbjct: 275 TGPSIKIWDLE 285
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
+ DG G+ D +++WDL F + +++FS + + + + + +K
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 76 LWD 78
LW+
Sbjct: 154 LWN 156
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP-IQALSFSENGYYLATAA 69
L T + PDG + G D Q +WDL + K++ + LD G I AL FS N Y+L AA
Sbjct: 195 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGDIINALCFSPNRYWLC-AA 251
Query: 70 DENCVKLWDLR 80
+K+WDL
Sbjct: 252 TGPSIKIWDLE 262
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
+ DG G+ D +++WDL F + +++FS + + + + + +K
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 76 LWD 78
LW+
Sbjct: 131 LWN 133
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 29 DSQVQIWDLKKQKNVTDFQLDAGPIQA--LSFSENGYYLATAADENCVKLWDLRKLKNFK 86
D+ +++WDL+ K + +DAGP+ A L+FS + YLAT V ++ + K
Sbjct: 101 DAHIRLWDLENGKQIK--SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158
Query: 87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTH 144
+L + I + + G Y+A D + +F + L H + + F
Sbjct: 159 SLDTRGKF-ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 145 AHYLASSSMDRTLKLYSL 162
+ L ++S D +K+Y +
Sbjct: 218 SQLLVTASDDGYIKIYDV 235
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 18 PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW 77
PDG G D + I+D+ K + + A PI++L+FS + L TA+D+ +K++
Sbjct: 174 PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Query: 78 DLRK------LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNE 131
D++ L + L+ + D F S + +V DV C + F +
Sbjct: 234 DVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-----VHTFFD 288
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
H V GV++ + + S D+ + +Y
Sbjct: 289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 3/143 (2%)
Query: 1 ISASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE 60
I + AG T PD GT +V I+ ++ K I ++++S
Sbjct: 115 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 174
Query: 61 NGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVF 118
+G YLA+ A + + ++D+ K TL+ IR L F + A D ++++
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Query: 119 LCKQWQELAMFNEHTAMVTGVRF 141
+ + H + V V F
Sbjct: 234 DVQHANLAGTLSGHASWVLNVAF 256
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
L PD +F G D+ ++WD+++ F I A+ F NG AT +D+ +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 76 LWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-----AMF 129
L+DLR + T D I + F +SG + +AG D F C W L +
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYD--DFNCNVWDALKADRAGVL 308
Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
H V+ + +A+ S D LK+++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 27 TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK 86
+ D+ +WD++ + T F G + +LS + + + A + KLWD+R+ +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGV 139
T +I +CF +G A D R+F + QEL ++ H ++ G+
Sbjct: 221 TFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 273
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
L PD +F G D+ ++WD+++ F I A+ F NG AT +D+ +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 76 LWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-----AMF 129
L+DLR + T D I + F +SG + +AG D F C W L +
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYD--DFNCNVWDALKADRAGVL 308
Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
H V+ + +A+ S D LK+++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 27 TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK 86
+ D+ +WD++ + T F G + +LS + + + A + KLWD+R+ +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGV 139
T +I +CF +G A D R+F + QEL ++ H ++ G+
Sbjct: 221 TFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 273
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
L PD +F G D+ ++WD+++ F I A+ F NG AT +D+ +
Sbjct: 203 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Query: 76 LWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-----AMF 129
L+DLR + T D I + F +SG + +AG D F C W L +
Sbjct: 263 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYD--DFNCNVWDALKADRAGVL 319
Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
H V+ + +A+ S D LK+++
Sbjct: 320 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 27 TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK 86
+ D+ +WD++ + T F G + +LS + + + A + KLWD+R+ +
Sbjct: 172 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 231
Query: 87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGV 139
T +I +CF +G A D R+F + QEL ++ H ++ G+
Sbjct: 232 TFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 284
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
L PD +F G D+ ++WD+++ F I A+ F NG AT +D+ +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 76 LWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-----AMF 129
L+DLR + T D I + F +SG + +AG D F C W L +
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYD--DFNCNVWDALKADRAGVL 308
Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
H V+ + +A+ S D LK+++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 27 TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK 86
+ D+ +WD++ + T F G + +LS + + + A + KLWD+R+ +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGV 139
T +I +CF +G A D R+F + QEL ++ H ++ G+
Sbjct: 221 TFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 273
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
L PD +F G D+ ++WD+++ F I A+ F NG AT +D+ +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 76 LWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-----AMF 129
L+DLR + T D I + F +SG + +AG D F C W L +
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYD--DFNCNVWDALKADRAGVL 308
Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
H V+ + +A+ S D LK+++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 27 TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK 86
+ D+ +WD++ + T F G + +LS + + + A + KLWD+R+ +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGV 139
T +I +CF +G A D R+F + QEL ++ H ++ G+
Sbjct: 221 TFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGI 273
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY 63
SG P +T HP + + D+ +++WD + + +Q +SF +G
Sbjct: 105 SGHRSP-VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 64 YLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW 123
LA+ + + +KLWD + + +T+ ++ + + +G ++ A D + K W
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTI---KMW 219
Query: 124 QE-----LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
+ + F H V VR +AS S D+T++++
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 19 DGLIFGIGTSDSQVQIW---------DLKKQKNVTDFQLDAGPIQALSFSE--------- 60
DG + ++D V++W +L++ ++V + A S SE
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 304
Query: 61 --NGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VR 116
G +L + + + +K+WD+ TL N+ +R + F G ++ D +R
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGGKFILSCADDKTLR 363
Query: 117 VFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
V+ K + + N H VT + F A Y+ + S+D+T+K++
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY 63
SG GP L + G+ D +++WD+ + ++ + F G
Sbjct: 304 SGKPGPFLLS------------GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK 351
Query: 64 YLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCK 121
++ + AD+ +++WD + + KTL ++ + L F ++ Y+ D V+V+ C+
Sbjct: 352 FILSCADDKTLRVWDYKNKRCMKTLNAHEHF-VTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 11/154 (7%)
Query: 17 HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG---PIQALSFSENGYYLATAADENC 73
+P G + D +++IW + + L G ++ +++S G YLA+A+ +
Sbjct: 25 NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84
Query: 74 VKLWDLRK--LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK-----QWQEL 126
+W + + TL+ N E++ + + SG +A D V++ + +++ +
Sbjct: 85 TCIWKKNQDDFECVTTLEGHEN-EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143
Query: 127 AMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
++ N HT V V + LAS+S D T+KLY
Sbjct: 144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL------DAGPIQALSFSENGY 63
T+ P G + D+ IW +KN DF+ +++++++ +G
Sbjct: 63 TVRKVAWSPCGNYLASASFDATTCIW----KKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 64 YLATAADENCVKLWDLRKLKNFKTLQLDPNY--EIRDLCFDQSGTYMAVAGTDVRVFLCK 121
LAT + + V +W++ + ++ + + ++ +++ + + S +A A D V L +
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 122 Q----WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
+ W A H + V + F LAS S DRT++++
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
+G +GTS ++VQ+WD+++QK + + + + +LS+ N Y L++ + + D
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 215
Query: 79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ------WQELAMFNEH 132
+R ++ + E+ L + G ++A G D V + W L F +H
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 275
Query: 133 TAMVTGVRFGT-HAHYLAS--SSMDRTLKLYSL 162
V V + ++ LA+ + DR ++++++
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 53 IQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG 112
I ++++ + G YLA V+LWD+++ K + + + + L ++ +Y+ +G
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN---SYILSSG 205
Query: 113 T--------DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
+ DVRV +A + H+ V G+R+ +LAS D + ++
Sbjct: 206 SRSGHIHHHDVRVAE----HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
+G +GTS ++VQ+WD+++QK + + + + +LS+ N Y L++ + + D
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 135
Query: 79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ------WQELAMFNEH 132
+R ++ + E+ L + G ++A G D V + W L F +H
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 195
Query: 133 TAMVTGVRFGT-HAHYLAS--SSMDRTLKLYSL 162
V V + ++ LA+ + DR ++++++
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 53 IQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG 112
I ++++ + G YLA V+LWD+++ K + + + + L ++ +Y+ +G
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGSLSWN---SYILSSG 125
Query: 113 T--------DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
+ DVRV +A + H+ V G+R+ +LAS D + ++
Sbjct: 126 SRSGHIHHHDVRVAE----HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
+G +GTS ++VQ+WD+++QK + + + + +LS+ N Y L++ + + D
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 226
Query: 79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ------WQELAMFNEH 132
+R ++ + E+ L + G ++A G D V + W L F +H
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 286
Query: 133 TAMVTGVRFGT-HAHYLAS--SSMDRTLKLYSL 162
V V + ++ LA+ + DR ++++++
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 53 IQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG 112
I ++++ + G YLA V+LWD+++ K + + + + L ++ +Y+ +G
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN---SYILSSG 216
Query: 113 T--------DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
+ DVRV +A + H+ V G+R+ +LAS D + ++
Sbjct: 217 SRSGHIHHHDVRVAE----HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 31 QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL 90
+V+IW+ + Q V Q+ P++A F ++ +D+ +++++ + +
Sbjct: 36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 91 DPNYEIRDLCFDQSGTYMAVAGTDVRVFLC---KQWQELAMFNEHTAMVTGVRFGTH-AH 146
P+Y IR + + Y+ D+ V L W F H V V F
Sbjct: 96 HPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 147 YLASSSMDRTLKLYSL 162
AS +DRT+K++SL
Sbjct: 155 TFASGCLDRTVKVWSL 170
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 31/54 (57%)
Query: 25 IGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
+G+ D ++++++ + V DF+ I++++ Y+ + +D+ VKLW+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-----NGYYLATAADENC 73
D F G D V++W L + + +F L G + +++ + + Y+ TA+D+
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 74 VKLWDLRKLKNFKTLQ 89
+K+WD + TL+
Sbjct: 210 IKIWDYQTKSCVATLE 225
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 31 QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL 90
+V++W+ + Q V Q+ P++A F ++ +D+ +++++ + +
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 91 DPNYEIRDLCFDQSGTYMAVAGTDVRVFLC---KQWQELAMFNEHTAMVTGVRFGTH-AH 146
P+Y IR + + Y+ D+ V L W F H V V F
Sbjct: 96 HPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 147 YLASSSMDRTLKLYSL 162
AS +DRT+K++SL
Sbjct: 155 TFASGCLDRTVKVWSL 170
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 31/54 (57%)
Query: 25 IGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
+G+ D ++++++ + V DF+ I++++ Y+ + +D+ VKLW+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-----NGYYLATAADENC 73
D F G D V++W L + + +F L G + +++ + + Y+ TA+D+
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 74 VKLWDLRKLKNFKTLQ 89
+K+WD + TL+
Sbjct: 210 IKIWDYQTKSCVATLE 225
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 31 QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL 90
+V++W+ + Q V Q+ P++A F ++ +D+ +++++ + +
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 91 DPNYEIRDLCFDQSGTYMAVAGTDVRVFLC---KQWQELAMFNEHTAMVTGVRFGTH-AH 146
P+Y IR + + Y+ D+ V L W F H V V F
Sbjct: 96 HPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 147 YLASSSMDRTLKLYSL 162
AS +DRT+K++SL
Sbjct: 155 TFASGCLDRTVKVWSL 170
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 31/54 (57%)
Query: 25 IGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
+G+ D ++++++ + V DF+ I++++ Y+ + +D+ VKLW+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-----NGYYLATAADENC 73
D F G D V++W L + + +F L G + +++ + + Y+ TA+D+
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 74 VKLWDLRKLKNFKTLQ 89
+K+WD + TL+
Sbjct: 210 IKIWDYQTKSCVATLE 225
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 22 IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN-GYYLATAADENCVKLWDLR 80
+ +GT +VQ+ DLK Q I A+S+S Y LATA+ ++ VKLWD+R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 81 ---------------KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL 119
K + ++ N ++ LCF G ++ GTD R+ L
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 31 QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL 90
+V++W+ + Q V Q+ P++A F ++ +D+ +++++ + +
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 91 DPNYEIRDLCFDQSGTYMAVAGTDVRVFLC---KQWQELAMFNEHTAMVTGVRFGTH-AH 146
P+Y IR + + Y+ D+ V L W F H V V F
Sbjct: 96 HPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 147 YLASSSMDRTLKLYSL 162
AS +DRT+K++SL
Sbjct: 155 TFASGCLDRTVKVWSL 170
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/54 (22%), Positives = 31/54 (57%)
Query: 25 IGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
+G+ D ++++++ + V DF+ I++++ Y+ + +D+ VKLW+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-----NGYYLATAADENC 73
D F G D V++W L + + +F L G + +++ + + Y+ TA+D+
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 74 VKLWDLRKLKNFKTLQ 89
+K+WD + TL+
Sbjct: 210 IKIWDYQTKSCVATLE 225
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
D + G D+ V++WDL + VTD + + +++ S +G A++ + +LWD
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVF 118
L K + ++ I +CF + +M A +R+F
Sbjct: 225 LTKGEALS--EMAAGAPINQICFSPNRYWMCAATEKGIRIF 263
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
+T+ + PDG + D ++WDL K + +++ A PI + FS N Y++ AA
Sbjct: 199 VTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA-PINQICFSPNRYWMC-AAT 256
Query: 71 ENCVKLWDLRK 81
E ++++DL
Sbjct: 257 EKGIRIFDLEN 267
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 7/146 (4%)
Query: 23 FGIGTS-DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK 81
F + S D +++W+L+ + F + +++FS + + + +N +++W++ K
Sbjct: 81 FAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-K 139
Query: 82 LKNFKTLQLDPNYE-IRDLCFDQS--GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMV 136
+ TL + + + + F S + G D V+V+ + + HT V
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYV 199
Query: 137 TGVRFGTHAHYLASSSMDRTLKLYSL 162
T V ASS D +L+ L
Sbjct: 200 TSVTVSPDGSLCASSDKDGVARLWDL 225
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 19/157 (12%)
Query: 22 IFGIGTSDSQVQIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR 80
+F G+ D+ V++WDL+ + V + G I ++ F +G T +D+ +L+D+R
Sbjct: 220 MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Query: 81 KLKNFKTLQLDPNYE------IRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-------- 126
+ +P+ + + F SG + ++ C W L
Sbjct: 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD---CYVWDTLLAEMVLNL 336
Query: 127 -AMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
+ N H ++ + + L + S D+ LK+++
Sbjct: 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLK---------KQKNVTDFQLDAGPIQALSFSEN 61
+ + + PDG FG G+ D +++D++ ++ + D +L + +++FS +
Sbjct: 252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI--VTSVAFSIS 309
Query: 62 GYYLATAADENCVKLWDL---RKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
G L +WD + N TLQ I L G+ + D
Sbjct: 310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 15/93 (16%)
Query: 6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP------IQALSFS 59
G +LT+ D ++ G +DS V+IWD+K + + Q GP + L F+
Sbjct: 316 TGHQSLTSGMELKDNILVS-GNADSTVKIWDIKTGQCLQTLQ---GPNKHQSAVTCLQFN 371
Query: 60 ENGYYLATAADENCVKLWDLRK---LKNFKTLQ 89
+N ++ T++D+ VKLWDL+ ++N TL+
Sbjct: 372 KN--FVITSSDDGTVKLWDLKTGEFIRNLVTLE 402
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
G T L DG+ G+ D+ +++WD++ + + +N L +
Sbjct: 277 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVS 334
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL 119
++ VK+WD++ + +TLQ ++ C + ++ + D V L
Sbjct: 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 386
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD--------AGPIQALS 57
A + + P + G+ DS V IW ++ + T F++D ++ ++
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT-FEMDLLAIIEGHENEVKGVA 114
Query: 58 FSENGYYLATAADENCVKLWDL----RKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT 113
+S +GYYLAT + + V +W+ + + LQ + + +++ + + S +A +
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSEALLASSSY 173
Query: 114 DVRVFLCK----QWQELAMFNEHTAMVTGVRFGTH--AHYLASSSMDRTLKLY 160
D V + K W+ +A+ N H V F L S S D T++++
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
DG +D +Q++ + + + D + + +FS + Y+AT + + VK+WD
Sbjct: 633 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 692
Query: 79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQ------ELAMFNEH 132
K T D + E + C + + + T F K W MF H
Sbjct: 693 SATGKLVHT--YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-H 749
Query: 133 TAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
T V RF LAS S D TL+L+ +
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA 69
T+ P + I S V++W++ + V D + + + FS +G TA+
Sbjct: 849 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 908
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVR--VFLCKQWQELA 127
D+ +++W+ +K+ + L EI D+ F ++ T M +A ++R + + ++
Sbjct: 909 DDQTIRVWETKKVCKNSAIVL--KQEI-DVVFQENET-MVLAVDNIRGLQLIAGKTGQID 964
Query: 128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
E A V+ H Y+A D +K+ L
Sbjct: 965 YLPE--AQVSCCCLSPHLEYVAFGDEDGAIKIIEL 997
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 21 LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR 80
L+ G++D +++WDL +++ + FS + LA+ + + ++LWD+R
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 81 KLKNFKTLQL 90
K++ +
Sbjct: 781 SANERKSINV 790
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA 69
T+ + + D F ++D +IW + + + G ++ +FS +G LAT
Sbjct: 1094 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD 1153
Query: 70 DENCVKLWDL 79
D +++W++
Sbjct: 1154 DNGEIRIWNV 1163
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 8/120 (6%)
Query: 29 DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL 88
D V++W++ + DF G + + + S + ++ + + K+W L L
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1130
Query: 89 QLDPNYEIRDLCFDQSGTYMAVA--GTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH 146
+ N +R F G +A ++R++ Q L H+ V GT H
Sbjct: 1131 K-GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL-----HSCAPISVEEGTATH 1184
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
DG +D +Q++ + + + D + + +FS + Y+AT + + VK+WD
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685
Query: 79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQ------ELAMFNEH 132
K T D + E + C + + + T F K W MF H
Sbjct: 686 SATGKLVHT--YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-H 742
Query: 133 TAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
T V RF LAS S D TL+L+ +
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA 69
T+ P + I S V++W++ + V D + + + FS +G TA+
Sbjct: 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVR--VFLCKQWQELA 127
D+ +++W+ +K+ + L EI D+ F ++ T M +A ++R + + ++
Sbjct: 902 DDQTIRVWETKKVCKNSAIVL--KQEI-DVVFQENET-MVLAVDNIRGLQLIAGKTGQID 957
Query: 128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
E A V+ H Y+A D +K+ L
Sbjct: 958 YLPE--AQVSCCCLSPHLEYVAFGDEDGAIKIIEL 990
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 21 LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR 80
L+ G++D +++WDL +++ + FS + LA+ + + ++LWD+R
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 81 KLKNFKTLQL 90
K++ +
Sbjct: 774 SANERKSINV 783
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA 69
T+ + + D F ++D +IW + + + G ++ +FS +G LAT
Sbjct: 1087 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD 1146
Query: 70 DENCVKLWDL 79
D +++W++
Sbjct: 1147 DNGEIRIWNV 1156
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 9 PTLTTA-QLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
P + +A ++ P F D ++++W+ Q T F+ + LS S NG Y+AT
Sbjct: 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT-FKAHESNVNHLSISPNGKYIAT 230
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVF 118
+ + +WD+ L + + D I + F+ ++AV GTD V++F
Sbjct: 231 GGKDKKLLIWDILNL-TYPQREFDAGSTINQIAFNPKLQWVAV-GTDQGVKIF 281
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 15/154 (9%)
Query: 23 FGIGTS-DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK 81
F I +S D +++WDL+ F + +++FS + + +A E +KLW++
Sbjct: 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
Query: 82 LKNFKTLQLDPNYEIRDLCFDQS------------GTYMAVAGTDVRVFLCK-QWQELAM 128
F + + + N+ C S Y A G D R+ + +Q
Sbjct: 150 ECKFSSAEKE-NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT 208
Query: 129 FNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
F H + V + + Y+A+ D+ L ++ +
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 28/167 (16%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQA-------LSFSENGYYLATAADE 71
D + G+ D V IW L +++ F + + L+ S+ + +++ +
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 72 NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL----- 126
++LWDLR +K + E+ + F + AG + + K W L
Sbjct: 98 KTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREI---KLWNILGECKF 153
Query: 127 --AMFNEHTAMVTGVRFG----------THAHYLASSSMDRTLKLYS 161
A H+ V+ VR+ A Y AS D LK+++
Sbjct: 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 18 PDGLIFGIGTSDSQVQIWDLKKQKNVT------DFQLDAGPIQALSFSENGYYLATAADE 71
P G G D++ ++ L KN + + A SF+ + + TA+ +
Sbjct: 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD 175
Query: 72 NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFD----QSGTYMAVAGTDVR--VFLCKQWQE 125
LWD+ ++ + LQ + LC D ++G G D + V+ + Q
Sbjct: 176 GTCALWDV---ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
+ F H + V VR+ AS S D T +LY L
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALS--FSENGYYLATA 68
+ + + +P G F G+ D+ +++DL+ + V + ++ A S FS +G L
Sbjct: 243 VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG 302
Query: 69 ADENCVKLWDLRK 81
++ + +WD+ K
Sbjct: 303 YNDYTINVWDVLK 315
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 33 QIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL--Q 89
++W+L+ +K VT L+ ++LATA+ + VK+WDLR+++ +
Sbjct: 242 ELWNLRMHKKKVTHVALNPC---------CDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 90 LDPNYEIRDLCFDQSGTYMAVA--GTDVRVFLCKQWQ-ELAMF---NEHTAMVTGVRFGT 143
L + + CF G + +++RV+ QW L + + H +T ++
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352
Query: 144 HAHY 147
H Y
Sbjct: 353 HPRY 356
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 29 DSQVQIWDLKKQKNVTDFQLDAG---PIQALSFSENGYYLATAADENCVKLW 77
D V+IWDL++ + F P+ A FS +G L T ++ ++++
Sbjct: 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 33 QIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL--Q 89
++W+L+ +K VT L+ ++LATA+ + VK+WDLR+++ +
Sbjct: 243 ELWNLRMHKKKVTHVALNPC---------CDWFLATASVDQTVKIWDLRQVRGKASFLYS 293
Query: 90 LDPNYEIRDLCFDQSGTYMAVA--GTDVRVFLCKQWQ-ELAMF---NEHTAMVTGVRFGT 143
L + + CF G + +++RV+ QW L + + H +T ++
Sbjct: 294 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 353
Query: 144 HAHY 147
H Y
Sbjct: 354 HPRY 357
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 29 DSQVQIWDLKKQKNVTDFQLDAG---PIQALSFSENGYYLATAADENCVKLW 77
D V+IWDL++ + F P+ A FS +G L T ++ ++++
Sbjct: 273 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 33 QIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL--Q 89
++W+L+ +K VT L+ ++LATA+ + VK+WDLR+++ +
Sbjct: 242 ELWNLRMHKKKVTHVALNPC---------CDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 90 LDPNYEIRDLCFDQSGTYMAVA--GTDVRVFLCKQWQ-ELAMF---NEHTAMVTGVRFGT 143
L + + CF G + +++RV+ QW L + + H +T ++
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352
Query: 144 HAHY 147
H Y
Sbjct: 353 HPRY 356
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 29 DSQVQIWDLKKQKNVTDFQLDAG---PIQALSFSENGYYLATAADENCVKLW 77
D V+IWDL++ + F P+ A FS +G L T ++ ++++
Sbjct: 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.9 bits (89), Expect = 0.001, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 12/159 (7%)
Query: 12 TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV--TDFQLDAGPIQALSFSENGYYLATAA 69
T A+ P G G V+IWD + ++ T + +GP++ +S+ +A
Sbjct: 63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG 122
Query: 70 DE----NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQ 122
+ V L+D T Q + + F S + ++G+D V +F
Sbjct: 123 EGRERFGHVFLFDTGTSNGNLTGQARA---MNSVDFKPSRPFRIISGSDDNTVAIFEGPP 179
Query: 123 WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
++ + F EHT V VR+ AS+ D T+ LY+
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
Score = 33.5 bits (75), Expect = 0.048, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-------GPIQALSFSENGYYL 65
+ + +PDG +F D + +++ F+ D+ G + L++S +G +
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDL 99
A+A+ + +K+W++ LK KT+ + E + L
Sbjct: 255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 22 IFGIGTSDSQVQIWDLKKQK-NVTDFQLDA--GPIQALSFSE-NGYYLATAADENCVKLW 77
+FG D ++ IWD + + +DA + LSF+ + + LAT + + V LW
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 78 DLRKLKNFKTLQLDPNYEIRDLCFD-----QSGTYMAVAGTDVRVFL 119
DLR LK L+L +D F + T +A +GTD R+ +
Sbjct: 308 DLRNLK----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 350
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 22 IFGIGTSDSQVQIWDLKKQK-NVTDFQLDA--GPIQALSFSE-NGYYLATAADENCVKLW 77
+FG D ++ IWD + + +DA + LSF+ + + LAT + + V LW
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 78 DLRKLKNFKTLQLDPNYEIRDLCFD-----QSGTYMAVAGTDVRVFL 119
DLR LK L+L +D F + T +A +GTD R+ +
Sbjct: 310 DLRNLK----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 352
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 22 IFGIGTSDSQVQIWDLKKQK-NVTDFQLDA--GPIQALSFSE-NGYYLATAADENCVKLW 77
+FG D ++ IWD + + +DA + LSF+ + + LAT + + V LW
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 78 DLRKLKNFKTLQLDPNYEIRDLCFD-----QSGTYMAVAGTDVRVFL 119
DLR LK L+L +D F + T +A +GTD R+ +
Sbjct: 306 DLRNLK----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 22 IFGIGTSDSQVQIWDLKKQKNVTDFQL-DA--GPIQALSFSE-NGYYLATAADENCVKLW 77
+FG D ++ IWD + L DA + LSF+ + + LAT + + V LW
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 78 DLRKLKNFKTLQLDPNYEIRDLCFD-----QSGTYMAVAGTDVRV 117
DLR LK L+L +D F + T +A +GTD R+
Sbjct: 304 DLRNLK----LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 28/167 (16%)
Query: 22 IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP-IQALSFSENGY----------YLATAAD 70
I T S V ++D K D + P ++ + GY +L +A+D
Sbjct: 141 IIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASD 200
Query: 71 ENCVKLWDLR------KLKNFKTLQLDPNYEIRDLCFD--QSGTYMAVAGT------DVR 116
++ V LWD+ K+ + K + + + D+ + + +VA D R
Sbjct: 201 DHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 260
Query: 117 VFLCKQWQELAMFNEHTAMVTGVRFGTHAHY-LASSSMDRTLKLYSL 162
+ L + HTA V + F ++ + LA+ S D+T+ L+ L
Sbjct: 261 SNTTSKPSHLV--DAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 22 IFGIGTSDSQVQIWDLKKQKNVTDFQL-DA--GPIQALSFSE-NGYYLATAADENCVKLW 77
+FG D ++ IWD + L DA + LSF+ + + LAT + + V LW
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 78 DLRKLKNFKTLQLDPNYEIRDLCFD-----QSGTYMAVAGTDVRV 117
DLR LK L+L +D F + T +A +GTD R+
Sbjct: 304 DLRNLK----LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 28/167 (16%)
Query: 22 IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP-IQALSFSENGY----------YLATAAD 70
I T S V ++D K D + P ++ + GY +L +A+D
Sbjct: 141 IIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASD 200
Query: 71 ENCVKLWDLR------KLKNFKTLQLDPNYEIRDLCFD--QSGTYMAVAGT------DVR 116
++ V LWD+ K+ + K + + + D+ + + +VA D R
Sbjct: 201 DHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTR 260
Query: 117 VFLCKQWQELAMFNEHTAMVTGVRFGTHAHY-LASSSMDRTLKLYSL 162
+ L + HTA V + F ++ + LA+ S D+T+ L+ L
Sbjct: 261 SNTTSKPSHLV--DAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 22 IFGIGTSDSQVQIWDLKKQK-NVTDFQLDA--GPIQALSFSE-NGYYLATAADENCVKLW 77
+FG D ++ IWD + + +DA + LSF+ + + LAT + + V LW
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 78 DLRKLKNFKTLQLDPNYEIRDLCFD-----QSGTYMAVAGTDVRV 117
DLR LK L+L +D F + T +A +GTD R+
Sbjct: 302 DLRNLK----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAA 69
+ T PDG + D ++ +W+L +K + + L A + +L+FS N Y+LA A
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVA 111
K LDP Y + DL + +G Y A A
Sbjct: 257 ------------ATGIKVFSLDPQYLVDDLRPEFAG-YSAAA 285
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 28 SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT 87
+D V+ W+L + + DF I L+ S +G +A+A + + LW+L K T
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 88 LQLDPNYEIRDLCFDQSGTYMAVA-GTDVRVF 118
L E+ L F + ++A A T ++VF
Sbjct: 234 LSAQD--EVFSLAFSPNRYWLAAATATGIKVF 263
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 26 GTSDSQVQIWDLKKQKNVT-----DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR 80
G+ D +++W +K Q T D+ + ++ + +A ++ VK W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN-EHTAMVTGV 139
+ + + + N I L GT +A AG D + L + AM+ V +
Sbjct: 185 QFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Query: 140 RFGTHAHYLASSSMDRTLKLYSL 162
F + ++LA+++ +K++SL
Sbjct: 244 AFSPNRYWLAAATA-TGIKVFSL 265
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAA 69
+ T PDG + D ++ +W+L +K + + L A + +L+FS N Y+LA A
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDL 99
K LDP Y + DL
Sbjct: 257 ------------ATGIKVFSLDPQYLVDDL 274
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 28 SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT 87
+D V+ W+L + + DF I L+ S +G +A+A + + LW+L K T
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 88 LQLDPNYEIRDLCFDQSGTYMAVA-GTDVRVF 118
L E+ L F + ++A A T ++VF
Sbjct: 234 LSAQD--EVFSLAFSPNRYWLAAATATGIKVF 263
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 26 GTSDSQVQIWDLKKQKNVT-----DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR 80
G+ D +++W +K Q T D+ + ++ + +A ++ VK W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN-EHTAMVTGV 139
+ + + + N I L GT +A AG D + L + AM+ V +
Sbjct: 185 QFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Query: 140 RFGTHAHYLASSSMDRTLKLYSL 162
F + ++LA+++ +K++SL
Sbjct: 244 AFSPNRYWLAAATA-TGIKVFSL 265
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAA 69
+ T PDG + D ++ +W+L +K + + L A + +L+FS N Y+LA A
Sbjct: 193 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAAT 250
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDL 99
K LDP Y + DL
Sbjct: 251 ------------ATGIKVFSLDPQYLVDDL 268
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 28 SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT 87
+D V+ W+L + + DF I L+ S +G +A+A + + LW+L K T
Sbjct: 168 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 88 LQLDPNYEIRDLCFDQSGTYMAVA-GTDVRVF 118
L E+ L F + ++A A T ++VF
Sbjct: 228 LSAQD--EVFSLAFSPNRYWLAAATATGIKVF 257
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 26 GTSDSQVQIWDLKKQKNVT-----DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR 80
G+ D +++W +K Q T D+ + ++ + +A ++ VK W+L
Sbjct: 119 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN-EHTAMVTGV 139
+ + + + N I L GT +A AG D + L + AM+ V +
Sbjct: 179 QFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 237
Query: 140 RFGTHAHYLASSSMDRTLKLYSL 162
F + ++LA+++ +K++SL
Sbjct: 238 AFSPNRYWLAAATA-TGIKVFSL 259
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAA 69
+ T PDG + D ++ +W+L +K + + L A + +L+FS N Y+LA A
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDL 99
K LDP Y + DL
Sbjct: 257 ------------ATGIKVFSLDPQYLVDDL 274
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 28 SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT 87
+D V+ W+L + + DF I L+ S +G +A+A + + LW+L K T
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 88 LQLDPNYEIRDLCFDQSGTYMAVA-GTDVRVF 118
L E+ L F + ++A A T ++VF
Sbjct: 234 LSAQD--EVFSLAFSPNRYWLAAATATGIKVF 263
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 26 GTSDSQVQIWDLKKQKNVT-----DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR 80
G+ D +++W +K Q T D+ + ++ + +A ++ VK W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN-EHTAMVTGV 139
+ + + + N I L GT +A AG D + L + AM+ V +
Sbjct: 185 QFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Query: 140 RFGTHAHYLASSSMDRTLKLYSL 162
F + ++LA+++ +K++SL
Sbjct: 244 AFSPNRYWLAAATA-TGIKVFSL 265
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAA 69
+ T PDG + D ++ +W+L +K + + L A + +L+FS N Y+LA A
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDL 99
K LDP Y + DL
Sbjct: 257 ------------ATGIKVFSLDPQYLVDDL 274
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 28 SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT 87
+D V+ W+L + + DF I L+ S +G +A+A + + LW+L K T
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 88 LQLDPNYEIRDLCFDQSGTYMAVA-GTDVRVF 118
L E+ L F + ++A A T ++VF
Sbjct: 234 LSAQD--EVFSLAFSPNRYWLAAATATGIKVF 263
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 8/143 (5%)
Query: 26 GTSDSQVQIWDLKKQKNVT-----DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR 80
G+ D +++W +K Q T D+ + ++ + +A ++ VK W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN-EHTAMVTGV 139
+ + + + N I L GT +A AG D + L + AM+ V +
Sbjct: 185 QFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Query: 140 RFGTHAHYLASSSMDRTLKLYSL 162
F + ++LA+++ +K++SL
Sbjct: 244 AFSPNRYWLAAATA-TGIKVFSL 265
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAA 69
+ T PDG + D ++ +W+L +K + L A + +L+FS N Y+LA A
Sbjct: 199 INTLTASPDGTLIASAGKDGEIXLWNLAAKK--AXYTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDL 99
K LDP Y + DL
Sbjct: 257 ------------ATGIKVFSLDPQYLVDDL 274
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 28 SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT 87
+D V+ W+L + + DF I L+ S +G +A+A + + LW+L K T
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYT 233
Query: 88 LQLDPNYEIRDLCFDQSGTYMAVA-GTDVRVF 118
L E+ L F + ++A A T ++VF
Sbjct: 234 LSAQD--EVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
DG +D +Q++ + + + + + + +FS + ++AT + + VK+W+
Sbjct: 632 DGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN 691
Query: 79 LRKLKNFKTLQLDPNYEIRDLC-FDQSGTYMAVAGTDVRVFLCKQWQ------ELAMFNE 131
+ T D + E + C F S ++ +A FL K W MF
Sbjct: 692 SMTGELVHTY--DEHSEQVNCCHFTNSSHHLLLATGSSDCFL-KLWDLNQKECRNTMFG- 747
Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
HT V RF LAS S D TLKL+
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 80 RKLKNFKTLQLDPNYE-IRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMV 136
+ + N L + P+ + + CF + G +A G D ++VF + ++L H V
Sbjct: 607 KNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEV 666
Query: 137 TGVRFGTHAHYLASSSMDRTLKLYS 161
F T ++A+ S+D+ +K+++
Sbjct: 667 LCCAFSTDDRFIATCSVDKKVKIWN 691
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 21 LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL- 79
L+ G+SD +++WDL +++ + FS + LA+ + + +KLWD
Sbjct: 720 LLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Query: 80 ----RKLKNFKTLQL---DPNYE----IRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAM 128
RK N K L DP + ++ + G + VA + ++FL
Sbjct: 780 SANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN-KIFL--------- 829
Query: 129 FNEHTAMVTG-VRFGTHA 145
F+ HT+ + G + G H+
Sbjct: 830 FDIHTSGLLGEIHTGHHS 847
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA 69
T+ + + D F ++D +IW + + + G ++ +FS + LAT
Sbjct: 1093 TVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGD 1152
Query: 70 DENCVKLWDLRKLKNFKTLQL-DPNYE---------IRDLCFDQSGTYMAVAG 112
D +++W+ + N + L L P E + DLCF G + AG
Sbjct: 1153 DNGEIRIWN---VSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG 1202
>pdb|3LRV|A Chain A, The Prp19 Wd40 Domain Contains A Conserved Protein
Interaction Region Essential For Its Function
Length = 343
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 12 TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTD-FQLDA-GPIQALSFSENGYYLATAA 69
++ LH D L+ + + D + +++L + F +D I+ + F++NGY++
Sbjct: 174 SSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC 233
Query: 70 DENCVKLWDLRK 81
D+ V +DLRK
Sbjct: 234 DQTVV-CFDLRK 244
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 53 IQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL---DPNYEIRDLCFDQSGTYMA 109
+ +LSF+++G L +A + ++ WD++ + TL + D E L D+ G +A
Sbjct: 304 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 363
Query: 110 VAGT-DVRVFLCKQWQ 124
G DV+ FL K W+
Sbjct: 364 EPGVFDVK-FLKKGWR 378
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 53 IQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL---DPNYEIRDLCFDQSGTYMA 109
+ +LSF+++G L +A + ++ WD++ + TL + D E L D+ G +A
Sbjct: 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 353
Query: 110 VAGT-DVRVFLCKQWQ 124
G DV+ FL K W+
Sbjct: 354 EPGVFDVK-FLKKGWR 368
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE--NGYYLATAADENCVKLW 77
G I G++D V++WD+KK F+ ++ L E N Y+ T + +N + +W
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 78 DLRK 81
L K
Sbjct: 233 KLPK 236
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE--NGYYLATAADENCVKLW 77
G I G++D V++WD+KK F+ ++ L E N Y+ T + +N + +W
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 78 DLRK 81
L K
Sbjct: 233 KLPK 236
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 62 GYYLATAADENCVKLWDLR----KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRV 117
G LAT + + +K++++ KL + T P + + D + GT +A D +V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKFGTILASCSYDGKV 79
Query: 118 FLCKQ----WQELAMFNEHTAMVTGVRFGTHAH 146
+ K+ W ++A+ H+A V V++ H +
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY 112
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 62 GYYLATAADENCVKLWDLR----KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRV 117
G LAT + + +K++++ KL + T P + + D + GT +A D +V
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKFGTILASCSYDGKV 81
Query: 118 FLCKQ----WQELAMFNEHTAMVTGVRFGTHAH 146
+ K+ W ++A+ H+A V V++ H +
Sbjct: 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY 114
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 62 GYYLATAADENCVKLWDLR----KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRV 117
G LAT + + +K++++ KL + T P + + D + GT +A D +V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKFGTILASCSYDGKV 79
Query: 118 FLCKQ----WQELAMFNEHTAMVTGVRFGTHAH 146
+ K+ W ++A+ H+A V V++ H +
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY 112
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 62 GYYLATAADENCVKLWDLR----KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRV 117
G +AT + + +K++++ KL + T P + + D + GT +A D +V
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKFGTILASCSYDGKV 79
Query: 118 FLCKQ----WQELAMFNEHTAMVTGVRFGTHAH 146
+ K+ W ++A+ H+A V V++ H +
Sbjct: 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY 112
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 6/157 (3%)
Query: 8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
G T + L D + G+SDS V++WD+ + + + L F N + T
Sbjct: 171 GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVT 228
Query: 68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQE 125
+ + + +WD+ + ++ + D Y+ A D ++V+ +
Sbjct: 229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 288
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
+ N H + +++ + S S D T++L+ +
Sbjct: 289 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI 323
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 29 DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL 88
D V++W LK+ + +D PI A S++G A A + V ++DL+KL N K+
Sbjct: 309 DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL-NSKSR 367
Query: 89 QL 90
L
Sbjct: 368 SL 369
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 51 GPIQALSFSENGYYLATAADENCVKLW 77
GPI L F++ L +A+D+ +++W
Sbjct: 248 GPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 62 GYYLATAADENCVKLWDLR----KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRV 117
G AT + + +K++++ KL + T P + + D + GT +A D +V
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKFGTILASCSYDGKV 79
Query: 118 FLCKQ----WQELAMFNEHTAMVTGVRFGTHAH 146
+ K+ W ++A+ H+A V V++ H +
Sbjct: 80 XIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY 112
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 26 GTSDSQVQIWDLKK--QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK 83
G+ + V+ W+++ Q Q+ GP+ + +S++G + TA+ + K+WDL +
Sbjct: 60 GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ 119
Query: 84 NFKTLQLD 91
+ Q D
Sbjct: 120 AIQIAQHD 127
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 17/152 (11%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
+T + P G + D Q++IW +K N + ++ + G + +A+
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 201
Query: 71 ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN 130
+ ++LW+ T N D + GTD +Q E++
Sbjct: 202 DGTIRLWECGTGTTIHTFNRKENPH------DGVNSIALFVGTD------RQLHEIS--- 246
Query: 131 EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
T+ + FGT+ Y+ + + + ++++
Sbjct: 247 --TSKKNNLEFGTYGKYVIAGHVSGVITVHNV 276
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 5/129 (3%)
Query: 13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN 72
TA+L I G D +V + Q+ + Q I L F +G L +++ +
Sbjct: 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREID--QAHVSEITKLKFFPSGEALISSSQDM 161
Query: 73 CVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFN 130
+K+W ++ N +TL + + D+ G + A D +R++ C + FN
Sbjct: 162 QLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
Query: 131 EHTAMVTGV 139
GV
Sbjct: 221 RKENPHDGV 229
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 17/152 (11%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
+T + P G + D Q++IW +K N + ++ + G + +A+
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 198
Query: 71 ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN 130
+ ++LW+ T N D + GTD +Q E++
Sbjct: 199 DGTIRLWECGTGTTIHTFNRKENPH------DGVNSIALFVGTD------RQLHEIS--- 243
Query: 131 EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
T+ + FGT+ Y+ + + + ++++
Sbjct: 244 --TSKKNNLEFGTYGKYVIAGHVSGVITVHNV 273
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 5/129 (3%)
Query: 13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN 72
TA+L I G D +V + Q+ + Q I L F +G L +++ +
Sbjct: 101 TAKLQMRRFILGTTEGDIKVLDSNFNLQREID--QAHVSEITKLKFFPSGEALISSSQDM 158
Query: 73 CVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFN 130
+K+W ++ N +TL + + D+ G + A D +R++ C + FN
Sbjct: 159 QLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
Query: 131 EHTAMVTGV 139
GV
Sbjct: 218 RKENPHDGV 226
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 22 IFGIGTSDSQVQIWDLKKQKNVTDFQL---DAGPIQALSFSE----NGYYLATAA---DE 71
+F S + IWDLK +K V ++G Q LS E N +ATA ++
Sbjct: 180 VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND 239
Query: 72 NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFD---QSGTYMAVAGTDVRVFL--CKQWQEL 126
+ +WDLR N L+ ++ L D Q + +G D V L + ++L
Sbjct: 240 PSILIWDLRN-ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL 298
Query: 127 AMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTLKLYSL 162
+ F +F A L A +S D +++ +L
Sbjct: 299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 17/164 (10%)
Query: 11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALS------FSENGY 63
+T+ + HP +G+ + +WD Q N T F GP A++ F+ N
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQGMGPGDAITGMKFNQFNTNQL 133
Query: 64 YLATAADENCVKLWDLRKLKNF-KTLQLDPNYEIRDLCFDQS-GTYMAVAGTDVRVFLCK 121
++++ ++ + ++ F KT D Y C D S M G L
Sbjct: 134 FVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY----CCVDVSVSRQMLATGDSTGRLLLL 189
Query: 122 QWQELAMFNE--HTAMVTGVRFGTHAHYL-ASSSMDRTLKLYSL 162
+F E H A VT F +L A+SS+D T+KL+ L
Sbjct: 190 GLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDL 233
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 63 YYLATAADENCVKLWDLRKLKN 84
+ +AT++ + VKLWDLR +K+
Sbjct: 217 WLMATSSVDATVKLWDLRNIKD 238
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 17/164 (10%)
Query: 11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALS------FSENGY 63
+T+ + HP +G+ + +WD Q N T F GP A++ F+ N
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQGMGPGDAITGMKFNQFNTNQL 134
Query: 64 YLATAADENCVKLWDLRKLKNF-KTLQLDPNYEIRDLCFDQS-GTYMAVAGTDVRVFLCK 121
++++ ++ + ++ F KT D Y C D S M G L
Sbjct: 135 FVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY----CCVDVSVSRQMLATGDSTGRLLLL 190
Query: 122 QWQELAMFNE--HTAMVTGVRFGTHAHYL-ASSSMDRTLKLYSL 162
+F E H A VT F +L A+SS+D T+KL+ L
Sbjct: 191 GLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDL 234
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 63 YYLATAADENCVKLWDLRKLKN 84
+ +AT++ + VKLWDLR +K+
Sbjct: 218 WLMATSSVDATVKLWDLRNIKD 239
>pdb|1M9N|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1M9N|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1OZ0|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor
Beta-dadf.
pdb|1OZ0|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor Beta-dadf
Length = 613
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 65 LATAADENCVKLWDLRKLKNFKTLQLDPNYEIRD 98
+A +E +K+ +K + LQ+DPNYE D
Sbjct: 363 VAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDD 396
>pdb|1THZ|A Chain A, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|1THZ|B Chain B, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|2B1G|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|C Chain C, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|D Chain D, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
Length = 593
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 65 LATAADENCVKLWDLRKLKNFKTLQLDPNYEIRD 98
+A +E +K+ +K + LQ+DPNYE D
Sbjct: 343 VAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDD 376
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 64/164 (39%), Gaps = 24/164 (14%)
Query: 11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSF--SENGYYLATA 68
+ T + DG G D V++WDL ++ + + + + ++ ++ +L+
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 69 ADENCVKLWDLRKLKNFKTLQL------------DPNYEIRDLCFDQSGTYMAVAGTDVR 116
D + LWD RK K + P + C D++G +V
Sbjct: 202 EDGR-ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG--------NVS 252
Query: 117 VFLCKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSSMDRTLKL 159
+ K H+ +TG+ + H+ +LAS S D T+ +
Sbjct: 253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV 296
>pdb|1DY7|A Chain A, Cytochrome Cd1 Nitrite Reductase, Co Complex
pdb|1DY7|B Chain B, Cytochrome Cd1 Nitrite Reductase, Co Complex
pdb|1HJ3|A Chain A, Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
pdb|1HJ3|B Chain B, Cytochrome Cd1 Nitrite Reductase, Dioxygen Complex
pdb|1HJ4|A Chain A, Cytochrome Cd1 Nitrite Reductase, X-Ray Reduced Dioxygen
Complex
pdb|1HJ4|B Chain B, Cytochrome Cd1 Nitrite Reductase, X-Ray Reduced Dioxygen
Complex
pdb|1HJ5|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reoxidised Enzyme
pdb|1HJ5|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reoxidised Enzyme
pdb|1H9X|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1H9X|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1H9Y|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form Complexed
To Cn
pdb|1H9Y|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form Complexed
To Cn
pdb|1HCM|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised From From
Tetragonal Crystals
pdb|1HCM|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised From From
Tetragonal Crystals
Length = 567
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 90 LDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLA 149
LD Y + SG Y+ V G D +V + W + V ++ G+ A +
Sbjct: 193 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM------KEPTTVAEIKIGSEARSIE 246
Query: 150 SSSMD 154
+S M+
Sbjct: 247 TSKME 251
>pdb|1GQ1|A Chain A, Cytochrome Cd1 Nitrite Reductase, Y25s Mutant, Oxidised
Form
pdb|1GQ1|B Chain B, Cytochrome Cd1 Nitrite Reductase, Y25s Mutant, Oxidised
Form
Length = 567
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 90 LDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLA 149
LD Y + SG Y+ V G D +V + W + V ++ G+ A +
Sbjct: 193 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM------KEPTTVAEIKIGSEARSIE 246
Query: 150 SSSMD 154
+S M+
Sbjct: 247 TSKME 251
>pdb|1E2R|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
pdb|1E2R|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced And Cyanide
Bound
Length = 567
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 90 LDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLA 149
LD Y + SG Y+ V G D +V + W + V ++ G+ A +
Sbjct: 193 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM------KEPTTVAEIKIGSEARSIE 246
Query: 150 SSSMD 154
+S M+
Sbjct: 247 TSKME 251
>pdb|1AOF|A Chain A, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOF|B Chain B, Cytochrome Cd1 Nitrite Reductase, Reduced Form
pdb|1AOM|A Chain A, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
pdb|1AOM|B Chain B, Substrate And Product Bound To Cytochrome Cd1 Nitrite
Reductase
pdb|1AOQ|A Chain A, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1AOQ|B Chain B, Cytochrome Cd1 Nitrite Reductase With Substrate And
Product Bound
pdb|1QKS|A Chain A, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
pdb|1QKS|B Chain B, Cytochrome Cd1 Nitrite Reductase, Oxidised Form
Length = 567
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 90 LDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLA 149
LD Y + SG Y+ V G D +V + W + V ++ G+ A +
Sbjct: 193 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM------KEPTTVAEIKIGSEARSIE 246
Query: 150 SSSMD 154
+S M+
Sbjct: 247 TSKME 251
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 35 WDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNY 94
W ++ + + L A P+Q ++ + G + + +++ R+L N K Q P+
Sbjct: 76 WKARQMYDDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQ 135
Query: 95 EIRDL 99
DL
Sbjct: 136 NFADL 140
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 12 TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG 51
T LH I + T + IWD K++++T +LDA
Sbjct: 58 TIRMLHRTNYIAFVSTKKELLHIWDDVKKQDITRVKLDAA 97
>pdb|1ST8|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus
pdb|2ADD|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With Sucrose
pdb|2ADE|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With Fructose
pdb|2AEY|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With 2,5
Dideoxy-2,5-Immino-D-Mannitol
Length = 543
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 1 ISASGAGGPTLTTAQLHPDGL--------IFGIGTSD---SQVQIWDLKKQKNVTD 45
I + GAGG T T++++P + +F GT + S++ W +K K V D
Sbjct: 481 IESFGAGGKTCITSRIYPKFVNNEEAHLFVFNNGTQNVKISEMSAWSMKNAKFVVD 536
>pdb|2AEZ|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia (E201q)
From Cichorium Intybus In Complex With 1-Kestose
Length = 543
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 1 ISASGAGGPTLTTAQLHPDGL--------IFGIGTSD---SQVQIWDLKKQKNVTD 45
I + GAGG T T++++P + +F GT + S++ W +K K V D
Sbjct: 481 IESFGAGGKTCITSRIYPKFVNNEEAHLFVFNNGTQNVKISEMSAWSMKNAKFVVD 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,094,975
Number of Sequences: 62578
Number of extensions: 196279
Number of successful extensions: 839
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 340
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)