BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1246
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LVG|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
           Lig Complex
 pdb|3LVG|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
           Lig Complex
 pdb|3LVG|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
           Lig Complex
 pdb|3LVH|A Chain A, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
           Light Chain Complex
 pdb|3LVH|B Chain B, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
           Light Chain Complex
 pdb|3LVH|C Chain C, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
           Light Chain Complex
          Length = 624

 Score = 28.5 bits (62), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 99  ENKP-SYGQPE----NKPSYGQPENRPSYGQPENRPSYGQPGNGASY 140
           E +P  YGQP+      PS   P   P +G     P+YGQP  G  Y
Sbjct: 577 ETQPIVYGQPQLMLTAGPSVAVPPQAP-FGYGYTAPAYGQPQPGFGY 622


>pdb|2L47|A Chain A, Solution Structure Of The Plyg Catalytic Domain
          Length = 165

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 34 PTEKRPPYGQPENTPPYAPAENRPSYGQSEN---SPSYGQPENKPSYGQPENRPSYGQ-P 89
          P   +P Y    NT   APAEN  SY  S N   S      + K   G P  R ++    
Sbjct: 18 PYTMKPKYITVHNTYNDAPAENEVSYMISNNNEVSFHIAVDDKKAIQGIPLERNAWACGD 77

Query: 90 GNGA 93
          GNG+
Sbjct: 78 GNGS 81


>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
           Domain With
           3-(2,6-Dichloro-3,
           5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
           Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
 pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
           Domain With
           3-(2,6-Dichloro-3,
           5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
           Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
          Length = 382

 Score = 26.9 bits (58), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 54  ENRPSYGQSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPENKP 111
           EN    G       Y  PE+ P +  P +R   G+P    ++GQ     + G  ++KP
Sbjct: 42  ENLYFQGMLAGVSEYELPED-PRWELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKP 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.301    0.128    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,946,706
Number of Sequences: 62578
Number of extensions: 358232
Number of successful extensions: 360
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 65
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 47 (22.7 bits)