Query psy1246
Match_columns 161
No_of_seqs 71 out of 73
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 19:54:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3630|consensus 27.6 1.6E+02 0.0035 31.6 6.2 15 142-156 549-563 (1405)
2 KOG1676|consensus 10.9 1.5E+03 0.033 22.5 8.5 22 128-149 494-515 (600)
3 PF15140 DUF4573: Domain of un 8.4 1.1E+03 0.023 19.0 9.2 61 38-98 12-72 (174)
4 KOG3091|consensus 6.8 9.7E+02 0.021 23.4 5.1 14 77-90 16-29 (508)
5 TIGR03113 exosortase_2 exosort 4.1 3E+02 0.0065 24.0 -0.1 8 8-15 171-178 (268)
6 TIGR03109 exosortase_1 exosort 3.5 3.5E+02 0.0077 23.4 -0.1 7 8-14 173-179 (267)
7 PF14021 DUF4237: Protein of u 3.3 5.6E+02 0.012 18.8 0.8 15 146-160 59-73 (90)
8 TIGR02602 8TM_EpsH eight trans 3.2 4E+02 0.0086 22.6 -0.0 6 9-14 149-154 (241)
9 TIGR03763 exosortase_3 exosort 3.0 4.4E+02 0.0096 23.0 -0.0 6 9-14 168-173 (260)
10 PF07054 Pericardin_rpt: Peric 2.1 1.9E+03 0.041 14.0 2.0 21 101-124 1-23 (34)
No 1
>KOG3630|consensus
Probab=27.60 E-value=1.6e+02 Score=31.63 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCCCc
Q psy1246 142 QPENKPSYGQPENGA 156 (161)
Q Consensus 142 aP~~~PafG~p~~g~ 156 (161)
+|+.++.|+-|..|+
T Consensus 549 ~plsa~~f~~pl~g~ 563 (1405)
T KOG3630|consen 549 SPLSASAFGKPLFGS 563 (1405)
T ss_pred CccCcccccCcccee
Confidence 444555566665553
No 2
>KOG1676|consensus
Probab=10.93 E-value=1.5e+03 Score=22.54 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q psy1246 128 RPSYGQPGNGASYGQPENKPSY 149 (161)
Q Consensus 128 ~PafGaP~~~p~fGaP~~~Paf 149 (161)
++++|+|..+++.|+.+..+.+
T Consensus 494 ~~~~gapp~~p~~g~~~~~~~~ 515 (600)
T KOG1676|consen 494 SAAQGAPPQSPATGASDYSPQW 515 (600)
T ss_pred cccCCCCCCCCCCCccccchhh
Confidence 3444555555555554443333
No 3
>PF15140 DUF4573: Domain of unknown function (DUF4573)
Probab=8.43 E-value=1.1e+03 Score=18.99 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1246 38 RPPYGQPENTPPYAPAENRPSYGQSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQP 98 (161)
Q Consensus 38 rP~fG~p~~~Ppfg~~~~~P~fG~~~~tP~yG~p~~~P~yG~p~~~PayG~p~~~p~yG~p 98 (161)
.|.++--...|.+.-....|.+......|.......+|.+|--.-.|.+.....+|-+..-
T Consensus 12 ~Pl~~~~~~~P~q~~~~~~P~~~~~~~~p~~avs~v~Pl~~vs~~ePl~~vs~~~Pl~~v~ 72 (174)
T PF15140_consen 12 QPLQGVSEIEPSQPVGKIDPLQAVSKIKPVQAVSEVQPLKGVSEIEPLQAVSNIQPLRAVS 72 (174)
T ss_pred ccCcCcccccCCCCcccccCCcccccccccccccccccCCCccccccCCcccccccCcccc
Confidence 3444444444444443334444333333333333334444433333333333333333333
No 4
>KOG3091|consensus
Probab=6.83 E-value=9.7e+02 Score=23.38 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCCCC
Q psy1246 77 YGQPENRPSYGQPG 90 (161)
Q Consensus 77 yG~p~~~PayG~p~ 90 (161)
+|...-.+.||...
T Consensus 16 t~~~~~~~~~gt~t 29 (508)
T KOG3091|consen 16 TGASGGQGNFGTST 29 (508)
T ss_pred CCcccccCCCCCcc
Confidence 33333444444443
No 5
>TIGR03113 exosortase_2 exosortase 2. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this relatively uncommon proteobacterial type to be type 2. We propose the gene symbol xrtB. Most species encountered so far with xrtB also contain xrtA (TIGR03109).
Probab=4.05 E-value=3e+02 Score=23.98 Aligned_cols=8 Identities=50% Similarity=1.020 Sum_probs=5.7
Q ss_pred hHhhccCC
Q psy1246 8 FAEACSGP 15 (161)
Q Consensus 8 ~~~~~~~~ 15 (161)
.+|+|||-
T Consensus 171 Va~aCSGl 178 (268)
T TIGR03113 171 VADACAGL 178 (268)
T ss_pred EeccCCcH
Confidence 46888873
No 6
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=3.51 E-value=3.5e+02 Score=23.37 Aligned_cols=7 Identities=86% Similarity=1.369 Sum_probs=5.2
Q ss_pred hHhhccC
Q psy1246 8 FAEACSG 14 (161)
Q Consensus 8 ~~~~~~~ 14 (161)
.+|+|||
T Consensus 173 Va~aCSG 179 (267)
T TIGR03109 173 VAEACSG 179 (267)
T ss_pred EeCCCCC
Confidence 4688887
No 7
>PF14021 DUF4237: Protein of unknown function (DUF4237)
Probab=3.31 E-value=5.6e+02 Score=18.78 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccccc
Q psy1246 146 KPSYGQPENGAKVIM 160 (161)
Q Consensus 146 ~PafG~p~~g~~~~~ 160 (161)
+|.||||.-|..+.+
T Consensus 59 aPwFgqpGGG~Qy~~ 73 (90)
T PF14021_consen 59 APWFGQPGGGTQYKL 73 (90)
T ss_pred ccccCCCCCeEEEEe
No 8
>TIGR02602 8TM_EpsH eight transmembrane protein EpsH (proposed exosortase). Members of this family are integral membrane proteins with eight predicted transmembrane helices in common. Some members of this family have long trailing sequences past the region described by this model. This model does not include the region of the first predicted transmembrane region. The best characterized member is EpsH of Methylobacillus sp. 12S, where it is part of a locus associated with biosynthesis of the exopolysaccharide methanolan.
Probab=3.25 E-value=4e+02 Score=22.58 Aligned_cols=6 Identities=83% Similarity=1.464 Sum_probs=0.0
Q ss_pred HhhccC
Q psy1246 9 AEACSG 14 (161)
Q Consensus 9 ~~~~~~ 14 (161)
+|+|||
T Consensus 149 ~~aCSG 154 (241)
T TIGR02602 149 VEACSG 154 (241)
T ss_pred ecCCCC
No 9
>TIGR03763 exosortase_3 exosortase, cyanobacterial variant. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci and/or different taxonomic lineages. We designate this relatively divergent cyanobacterial type to be type 3. We propose the gene symbol xrtC. This type coexists with a TIGR02602-recognized form in Nostoc sp. PCC 7120.
Probab=2.97 E-value=4.4e+02 Score=22.98 Aligned_cols=6 Identities=50% Similarity=1.132 Sum_probs=0.0
Q ss_pred HhhccC
Q psy1246 9 AEACSG 14 (161)
Q Consensus 9 ~~~~~~ 14 (161)
+|+|||
T Consensus 168 a~aCSG 173 (260)
T TIGR03763 168 VPGCSG 173 (260)
T ss_pred eccCcc
No 10
>PF07054 Pericardin_rpt: Pericardin like repeat; InterPro: IPR009765 This entry represents a repeated sequence of around 34 residues in length, which is found in multiple copies in Drosophila pericardin and other extracellular matrix proteins [, ].
Probab=2.13 E-value=1.9e+03 Score=13.99 Aligned_cols=21 Identities=38% Similarity=0.996 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCC--CCCCCCC
Q psy1246 101 KPSYGQPENKPSYGQPE--NRPSYGQ 124 (161)
Q Consensus 101 ~PafG~p~~~P~yG~p~--~~P~yG~ 124 (161)
+|.|| ++|..|... .+|.||.
T Consensus 1 QpgyG---~QpGvggQ~g~gQpGYg~ 23 (34)
T PF07054_consen 1 QPGYG---SQPGVGGQTGAGQPGYGT 23 (34)
T ss_pred CCccc---cCCccccccCCCCCcccc
Done!