Query psy1246
Match_columns 161
No_of_seqs 71 out of 73
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 19:55:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1loi_A Cyclic 3',5'-AMP specif 4.3 2.8E+02 0.0096 15.7 0.8 9 7-15 6-14 (26)
2 1ans_A Neurotoxin III; NMR {An 2.9 3E+02 0.01 15.8 0.1 9 8-16 18-26 (27)
3 2ns0_A Hypothetical protein; r 1.3 1E+03 0.035 16.7 0.7 11 2-12 24-34 (85)
4 2vtu_J MS2 coat protein; virus 1.3 1.3E+03 0.046 18.9 1.5 14 19-32 123-136 (257)
5 1vpe_A Phosphoglycerate kinase 1.2 6.5E+02 0.022 22.3 -0.6 8 154-161 49-56 (398)
6 1v6s_A Phosphoglycerate kinase 1.2 6.6E+02 0.022 22.2 -0.6 8 154-161 48-55 (390)
7 3q3v_A Phosphoglycerate kinase 1.2 6.9E+02 0.024 22.2 -0.6 8 154-161 55-62 (403)
8 1zmr_A Phosphoglycerate kinase 1.2 6.9E+02 0.024 22.0 -0.6 8 154-161 50-57 (387)
9 1php_A 3-phosphoglycerate kina 1.2 6.9E+02 0.024 22.1 -0.6 8 154-161 50-57 (394)
10 2eqf_A Tumor necrosis factor, 1.2 1.4E+03 0.049 14.4 1.1 9 24-32 38-46 (46)
No 1
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=4.29 E-value=2.8e+02 Score=15.73 Aligned_cols=9 Identities=56% Similarity=1.077 Sum_probs=6.8
Q ss_pred hhHhhccCC
Q psy1246 7 SFAEACSGP 15 (161)
Q Consensus 7 ~~~~~~~~~ 15 (161)
-|.|.||-|
T Consensus 6 ffcetcskp 14 (26)
T 1loi_A 6 FFCETCSKP 14 (26)
T ss_dssp HHHHTSSCT
T ss_pred HHHHhcCCc
Confidence 478889865
No 2
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=2.94 E-value=3e+02 Score=15.84 Aligned_cols=9 Identities=56% Similarity=1.387 Sum_probs=6.2
Q ss_pred hHhhccCCC
Q psy1246 8 FAEACSGPS 16 (161)
Q Consensus 8 ~~~~~~~~~ 16 (161)
.-|.||||.
T Consensus 18 ~~~GCSgpk 26 (27)
T 1ans_A 18 YPEGCSGPK 26 (27)
T ss_dssp CSSCSSSSC
T ss_pred ccccCcCCC
Confidence 347788874
No 3
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=1.32 E-value=1e+03 Score=16.68 Aligned_cols=11 Identities=55% Similarity=0.863 Sum_probs=8.5
Q ss_pred CCCchhhHhhc
Q psy1246 2 SACPSSFAEAC 12 (161)
Q Consensus 2 ~~~~~~~~~~~ 12 (161)
|.|||..|.+-
T Consensus 24 TicPSEvARal 34 (85)
T 2ns0_A 24 SICPSDVARAV 34 (85)
T ss_dssp CBCHHHHHHHH
T ss_pred CcCHHHHHHHh
Confidence 56888888776
No 4
>2vtu_J MS2 coat protein; virus, dimer, virion, octahedron, RNA-binding, coat Pro capsid protein; 3.50A {Enterobacterio phage MS2} SCOP: d.85.1.1 PDB: 2wbh_A
Probab=1.29 E-value=1.3e+03 Score=18.88 Aligned_cols=14 Identities=43% Similarity=0.453 Sum_probs=11.0
Q ss_pred CCCCccccCCCCCC
Q psy1246 19 PANSGLYGNGPSGY 32 (161)
Q Consensus 19 ~~~~~~~~~~~s~~ 32 (161)
-+|+|+|.|--+|-
T Consensus 123 aa~sg~yAn~~~fv 136 (257)
T 2vtu_J 123 AANSGIYANFTQFV 136 (257)
T ss_dssp TTSSSSCSSCCCCC
T ss_pred hhccccccceeEEE
Confidence 47999999977663
No 5
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=1.25 E-value=6.5e+02 Score=22.27 Aligned_cols=8 Identities=63% Similarity=1.078 Sum_probs=4.8
Q ss_pred CCcccccC
Q psy1246 154 NGAKVIMM 161 (161)
Q Consensus 154 ~g~~~~~~ 161 (161)
+|+|||+|
T Consensus 49 ~gakvil~ 56 (398)
T 1vpe_A 49 QGAKVILL 56 (398)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 46666654
No 6
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=1.24 E-value=6.6e+02 Score=22.17 Aligned_cols=8 Identities=25% Similarity=0.833 Sum_probs=4.8
Q ss_pred CCcccccC
Q psy1246 154 NGAKVIMM 161 (161)
Q Consensus 154 ~g~~~~~~ 161 (161)
+|+|||+|
T Consensus 48 ~gakvil~ 55 (390)
T 1v6s_A 48 GGASLVLL 55 (390)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 46666654
No 7
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0
Probab=1.19 E-value=6.9e+02 Score=22.17 Aligned_cols=8 Identities=50% Similarity=0.854 Sum_probs=3.9
Q ss_pred CCcccccC
Q psy1246 154 NGAKVIMM 161 (161)
Q Consensus 154 ~g~~~~~~ 161 (161)
+|+|||+|
T Consensus 55 ~GakVil~ 62 (403)
T 3q3v_A 55 NGCSVILA 62 (403)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 35555543
No 8
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=1.19 E-value=6.9e+02 Score=22.05 Aligned_cols=8 Identities=50% Similarity=0.825 Sum_probs=4.6
Q ss_pred CCcccccC
Q psy1246 154 NGAKVIMM 161 (161)
Q Consensus 154 ~g~~~~~~ 161 (161)
+|+|||+|
T Consensus 50 ~gakvil~ 57 (387)
T 1zmr_A 50 QGAKVMVT 57 (387)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 46666654
No 9
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Probab=1.18 E-value=6.9e+02 Score=22.06 Aligned_cols=8 Identities=63% Similarity=0.953 Sum_probs=4.7
Q ss_pred CCcccccC
Q psy1246 154 NGAKVIMM 161 (161)
Q Consensus 154 ~g~~~~~~ 161 (161)
+|+|||+|
T Consensus 50 ~gakvil~ 57 (394)
T 1php_A 50 HGAKVILA 57 (394)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 46666654
No 10
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=1.16 E-value=1.4e+03 Score=14.38 Aligned_cols=9 Identities=56% Similarity=1.143 Sum_probs=0.0
Q ss_pred cccCCCCCC
Q psy1246 24 LYGNGPSGY 32 (161)
Q Consensus 24 ~~~~~~s~~ 32 (161)
+|++++|++
T Consensus 38 ~Y~~g~~~~ 46 (46)
T 2eqf_A 38 MYGSGPSSG 46 (46)
T ss_dssp CSCCCSCCC
T ss_pred hhcCCCCCC
Done!