RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1246
(161 letters)
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 39.0 bits (91), Expect = 4e-04
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 17/107 (15%)
Query: 44 PENTPPYAPAENRPSYGQSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKPS 103
+ P E +P+ EN+P P+ + EN + N + E PS
Sbjct: 29 SNSKQPEKKPEIKPN----ENTP--KIPKKPDNKEPSENNNNKSNNEN-----KDEENPS 77
Query: 104 YGQPENKPSYGQPENRPSYG-----QPENRPSYGQPGNGASYGQPEN 145
PE KP + + +P+ +P QP N QP N
Sbjct: 78 STNPEKKPDPSKNKEEIEKPKDEPKKPDKKPQADQP-NNVHADQPNN 123
Score = 35.6 bits (82), Expect = 0.007
Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 62 SENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPEN----KPSYGQPE 117
S S + QPE KP E +P+ P P+ + EN + + E
Sbjct: 25 STTSSNSKQPEKKP-----EIKPNENTPKI------PKKPDNKEPSENNNNKSNNENKDE 73
Query: 118 NRPSYGQPENRPSYGQPGNGASYG-----QPENKPSYGQPEN 154
PS PE +P + +P+ KP QP N
Sbjct: 74 ENPSSTNPEKKPDPSKNKEEIEKPKDEPKKPDKKPQADQPNN 115
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 36.6 bits (84), Expect = 0.004
Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 11/137 (8%)
Query: 13 SGPSPTPANSGLYGNGPSGYTPTEKRPPYGQPENTPPYA--PAENRPSYGQSENSPSYGQ 70
+G S ++ Y N P+ TP P P + PP + P N P ++
Sbjct: 412 AGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPL-- 469
Query: 71 PENKPSYGQPENRPSYGQPGNGASYGQPE-NKPSYGQPENKPSYGQPEN---RPSYGQPE 126
N P ++ +Y + QP N P+ QP +G N P +P
Sbjct: 470 -SNAPPSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPF 528
Query: 127 NRPSYGQPGNGASYGQP 143
YG GN A+ P
Sbjct: 529 GSAPYG--GNAATTADP 543
Score = 34.3 bits (78), Expect = 0.022
Identities = 34/148 (22%), Positives = 51/148 (34%), Gaps = 12/148 (8%)
Query: 2 SACPSSFAEACSGPSPTPANSGLYGNGPSGYTPTEKRPPYGQPENTPPYA--PAENRPSY 59
A S+ A++ + S ++ Y N + P P N PP + P N P
Sbjct: 391 CAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPP-- 448
Query: 60 GQSENSPSYGQPENKPSYGQP--ENRPSYGQPGNGASYGQPENKPSYGQPE-NKPSYGQP 116
+ N P P + Y N P + ++Y + QP N P+ QP
Sbjct: 449 --NSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHSAYHAAYQHRAANQPAANLPTANQP 506
Query: 117 ENRPSYGQPEN---RPSYGQPGNGASYG 141
+G N P +P A YG
Sbjct: 507 AANNFHGAAGNSVGNPFASRPFGSAPYG 534
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 35.1 bits (80), Expect = 0.011
Identities = 26/129 (20%), Positives = 36/129 (27%), Gaps = 8/129 (6%)
Query: 29 PSGYTPTEKRPPYGQPENTPPYAPAENRPSYGQSENSPSYGQPENKPSYGQPENRPSYGQ 88
P GY + N P P + + Y QP P+ QP +P Y
Sbjct: 377 PEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAP 436
Query: 89 PGNGASYGQPENKPSYGQPENKPSYGQPENRPSYGQPENRPSYGQPGNGASYGQPENKPS 148
G S Q E +Y QP + Q QP +
Sbjct: 437 APEQPVAGNAWQAEEQQSTFAPQSTYQTEQ--TYQQPAAQEPLYQQ------PQPVEQQP 488
Query: 149 YGQPENGAK 157
+PE +
Sbjct: 489 VVEPEPVVE 497
Score = 27.4 bits (60), Expect = 4.2
Identities = 29/135 (21%), Positives = 38/135 (28%), Gaps = 4/135 (2%)
Query: 18 TPANSGLYGNGPSGYTPTEKRPPYGQPENTPPYAPAENRPSYGQSENSPSYGQPENKPSY 77
T + P +P G P APA Y Q N+P
Sbjct: 341 TQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPE--GYPQQSQYAQPAVQYNEPLQ 398
Query: 78 GQPENRPSYGQPGNGASYGQPENKPSYGQPENKPSYGQPENRPSYGQPENRPSYGQPGNG 137
+ + Y P QP P+ QP +P Y +P G
Sbjct: 399 QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAP 458
Query: 138 ASYGQPENKPSYGQP 152
S Q E +Y QP
Sbjct: 459 QSTYQTEQ--TYQQP 471
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 33.6 bits (77), Expect = 0.031
Identities = 36/158 (22%), Positives = 47/158 (29%), Gaps = 11/158 (6%)
Query: 3 ACPSSFAEACSGP-SPTPANSGLYG-NGPSGYTPTEKRPPYGQPENTPPYAPAENRPSYG 60
A P A S P P P G GP P Q P PA +
Sbjct: 96 APPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEP 155
Query: 61 QSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPENKPSYGQPENRP 120
+ + + G P P Y P + Q ++ Y +P Y Q R
Sbjct: 156 GAWPRAADDYGWQQQRLGFPPRAP-YASP-ASYAPEQERDREPYDA--GRPEYDQR--RR 209
Query: 121 SYGQPENRPSYGQPGNGASYGQPENKPSYGQPENGAKV 158
Y P RP + +P +PE P G G
Sbjct: 210 DYDHP--RPDWDRP-RRDRTDRPEPPPGAGHVHRGGPG 244
Score = 33.6 bits (77), Expect = 0.035
Identities = 27/118 (22%), Positives = 38/118 (32%), Gaps = 8/118 (6%)
Query: 36 EKRPPYGQPENTPPYAPAENRPSYGQSENSPSYGQPENKPSYGQPEN-RPSYGQPGNGAS 94
++ G P P +PA P + G+PE ++ RP + +P
Sbjct: 167 WQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRP-RRDR 225
Query: 95 YGQPENKPSYGQPENKPSYGQPENRPSYGQPENRPSYGQPGNGASYGQPENKPSYGQP 152
+PE P G P R RPS P QP P G+P
Sbjct: 226 TDRPEPPPGAGHVHR--GGPGPPERDDAPVVPIRPSAPGP----LAAQPAPAPGPGEP 277
Score = 26.7 bits (59), Expect = 7.0
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 44 PENTPPYAPAENRPSYGQSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKPS 103
P P P + + P +P +P G R PG P +P+
Sbjct: 90 PSAGEPAPPPPHARRT----SEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPA 145
Query: 104 YGQPENKPSYGQPENRPSYGQPENRPSYGQPGNGASYGQPENKP 147
Y + +P G R + + G P A Y P +
Sbjct: 146 YPAYQQRPEPG-AWPRAADDYGWQQQRLGFP-PRAPYASPASYA 187
Score = 26.3 bits (58), Expect = 9.5
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 57 PSYGQSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPENKPSYGQP 116
PS G+ P + + ++P +P RP G G A P P +P+Y
Sbjct: 90 PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAY 149
Query: 117 ENRPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPE 153
+ RP G R + G P P Y P
Sbjct: 150 QQRPEPG-AWPRAADDYGWQQQRLGFPPRAP-YASPA 184
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 31.6 bits (72), Expect = 0.15
Identities = 21/113 (18%), Positives = 31/113 (27%), Gaps = 6/113 (5%)
Query: 43 QPENTPPYAPAENRPSYGQSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKP 102
+N+ P A+ + S S G P P + P P +
Sbjct: 167 NSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLP------PAPSSFQ 220
Query: 103 SYGQPENKPSYGQPENRPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPENG 155
S P + S P P P P P + P + + P G
Sbjct: 221 SDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGG 273
Score = 28.9 bits (65), Expect = 1.1
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 42 GQPENTPPYAPAENRPSYGQSENSPSYGQPENKPSYGQPENRPSY-GQPGNGASYGQPEN 100
G+ + +P++ S + PS + + PS PS S P N
Sbjct: 174 GEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTN 233
Query: 101 KPSYGQPENKPS-YGQPENRPSYGQPENRPS 130
P P Q S +P +
Sbjct: 234 PSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264
Score = 27.3 bits (61), Expect = 3.8
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 13 SGPSPTPANSGLYGNGPSGYTPTEKRPPYGQPENTPPYAPAENRPSYGQSENSPSYGQPE 72
+ PS P++S + PS P P ++ P +S +PS
Sbjct: 182 ASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLP-PAPSSFQSDTPPPSPESPTNPSPPPGP 240
Query: 73 NKPS--YGQPENRPSYGQP 89
P Q S +P
Sbjct: 241 AAPPPPPVQQVPPLSTAKP 259
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase;
Provisional.
Length = 445
Score = 31.0 bits (71), Expect = 0.22
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 123 GQPENRPSYGQPGNGA-----SYGQPENKPSYGQPENGA 156
G NR +G G + PEN S GQPE+GA
Sbjct: 163 GIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGA 201
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 30.9 bits (70), Expect = 0.26
Identities = 22/138 (15%), Positives = 35/138 (25%), Gaps = 3/138 (2%)
Query: 15 PSPTPANSGLYGNGPSGYTPTEKRPPYGQPENTPPYAPAENRPSYGQSENSPSYGQPENK 74
P P GY + P AP++ P P +
Sbjct: 186 PRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQ 245
Query: 75 PSYGQPENRPSYGQPGNGASYGQPENKPSYGQPENKPSYGQPENRPSYGQPENRPSYGQP 134
P + + P QP + P+N+P+ + P QP
Sbjct: 246 PQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL---PPPQQP 302
Query: 135 GNGASYGQPENKPSYGQP 152
QP+ + Q
Sbjct: 303 QLLPLVQQPQGQQRGPQF 320
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 29.6 bits (67), Expect = 0.71
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 48 PPYAPAENRPSYGQSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKPSYGQP 107
PPYA A+ R Q + Q +P+ P+ Q P P
Sbjct: 94 PPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQV-AP 152
Query: 108 ENKPSYGQPENRPSYGQPENRPSYGQP 134
+P + P+ QP + QP
Sbjct: 153 APQPVHSAPQPAQQAFQPAEPVAAPQP 179
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 29.4 bits (66), Expect = 0.77
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 78 GQPENRPSYGQPGNGASYGQPENKPSYGQPENKPSYGQPENRPSYGQPENRPSYGQP--G 135
G R G G+ P S+G ++P PE+ + P YG
Sbjct: 10 GAGGPRSHGGPDGDEGD-SNPYYPSSFGSSWDRPGPPVPEDYDA--PSHRPPPYGGSNGD 66
Query: 136 NGASYGQP 143
Y QP
Sbjct: 67 RHGGY-QP 73
Score = 28.7 bits (64), Expect = 1.4
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 11/67 (16%)
Query: 89 PGNGASYGQPENKPSYGQPENKPSYGQPENRPSYGQPENRPSYGQPGNGASYGQPENKPS 148
G S+G P+ P S+G +RP PE+ + P
Sbjct: 11 AGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDA-----------PSHRPPP 59
Query: 149 YGQPENG 155
YG
Sbjct: 60 YGGSNGD 66
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 28.8 bits (65), Expect = 1.5
Identities = 19/146 (13%), Positives = 28/146 (19%)
Query: 13 SGPSPTPANSGLYGNGPSGYTPTEKRPPYGQPENTPPYAPAENRPSYGQSENSPSYGQPE 72
+ P G P P P A A + + +
Sbjct: 594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHH 653
Query: 73 NKPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPENKPSYGQPENRPSYGQPENRPSYG 132
K + G P P+ G +P+ P+
Sbjct: 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713
Query: 133 QPGNGASYGQPENKPSYGQPENGAKV 158
A Q S P V
Sbjct: 714 ADDPAAQPPQAAQGASAPSPAADDPV 739
Score = 28.4 bits (64), Expect = 2.0
Identities = 26/152 (17%), Positives = 41/152 (26%), Gaps = 11/152 (7%)
Query: 5 PSSFAEACSGPSPTPANSGLYGNGPSGYTPTEKRPPYGQPENTPPYAPAEN--------- 55
++ AEA + P+P A + + + G P APA
Sbjct: 633 AAAPAEASAAPAPGVAAPEHHPKHVAVPDAS--DGGDGWPAKAGGAAPAAPPPAPAPAAP 690
Query: 56 RPSYGQSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPENKPSYGQ 115
G + P+ P+ + Q GAS P P
Sbjct: 691 AAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD 750
Query: 116 PENRPSYGQPENRPSYGQPGNGASYGQPENKP 147
P P+ P P+ A P ++
Sbjct: 751 PAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
Score = 27.6 bits (62), Expect = 3.6
Identities = 12/100 (12%), Positives = 18/100 (18%)
Query: 26 GNGPSGYTPTEKRPPYGQPENTPPYAPAENRPSYGQSENSPSYGQPENKPSYGQPENRPS 85
G G P A + + P P+ P
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449
Query: 86 YGQPGNGASYGQPENKPSYGQPENKPSYGQPENRPSYGQP 125
G + P +P+ P P
Sbjct: 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA 489
Score = 27.3 bits (61), Expect = 4.1
Identities = 12/86 (13%), Positives = 20/86 (23%)
Query: 13 SGPSPTPANSGLYGNGPSGYTPTEKRPPYGQPENTPPYAPAENRPSYGQSENSPSYGQPE 72
+ P+ PA + + P P P P G + + P P
Sbjct: 404 AAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPS 463
Query: 73 NKPSYGQPENRPSYGQPGNGASYGQP 98
+P+ P
Sbjct: 464 AQPAPAPAAAPEPTAAPAPAPPAAPA 489
>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional.
Length = 388
Score = 28.4 bits (64), Expect = 1.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 25 YGNGPSGYTPTEK 37
+ N P+GYTPTEK
Sbjct: 154 FPNNPTGYTPTEK 166
>gnl|CDD|223023 PHA03249, PHA03249, DNA packaging tegument protein UL25;
Provisional.
Length = 653
Score = 28.1 bits (62), Expect = 2.2
Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 7/112 (6%)
Query: 2 SACPSSFAEACSGPSPTPANSGLYGNGPSGYTPTEKRPPYGQP--ENTPP---YAPAENR 56
S SSF S + A + G +P + P A A
Sbjct: 56 SDNKSSFEVVSETDSGSEAEAERGRRAGMGGRNKATKPSRRNKTTQCRPTSLALATAATM 115
Query: 57 PSYGQSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPE 108
P+ S SP P + PS E + G +N+ + QPE
Sbjct: 116 PATPSSGKSPKVSSPPSIPSL--SEEDEGAERNSGGDDSSHTDNESTQSQPE 165
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1
homolog.
Length = 808
Score = 27.6 bits (61), Expect = 3.9
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 27 NGPSGYTPTEKRPPYGQPENTPPYAPAENRPSYGQSENSPSYGQPENKPSYGQPENRP 84
N T+ QP PP + S Q + S S QP+N P+ +P P
Sbjct: 42 NDGQNSPETQSPLTELQPSPLPPNTTLDAPVSDSQGDESSSEQQPQN-PNSTEPAPPP 98
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183). This
family consists of several eukaryotic proteins of around
360 residues in length. The function of this family is
unknown.
Length = 317
Score = 27.0 bits (60), Expect = 4.3
Identities = 18/77 (23%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
Query: 73 NKPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPENKPSYGQPENRPSYGQPENRPSYG 132
+ RP G G G P P + P YG P PS G
Sbjct: 178 LSCGGVRGGPRPERAGYGGGGGGGGGGGGGGGSGPGPPPPGFKSSFPPPYG-PGAGPSSG 236
Query: 133 QPGNGASYGQPENKPSY 149
G GQ P +
Sbjct: 237 YGSGGTRSGQGGWGPGF 253
>gnl|CDD|147296 pfam05038, Cytochrom_B558a, Cytochrome Cytochrome b558
alpha-subunit. Cytochrome b-245 light chain (p22-phox)
is one of the key electron transfer elements of the
NADPH oxidase in phagocytes.
Length = 186
Score = 26.8 bits (59), Expect = 4.3
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 36 EKRPPYGQ-----PENTPPYAPAENRPSYGQSENSPSYGQP 71
++RPP G P N PP PAE R + +Y P
Sbjct: 138 KERPPVGGTIKQPPSNPPPRPPAEARKKPLEELGVSAYVNP 178
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 27.2 bits (60), Expect = 4.6
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
Query: 71 PENKPSYGQPENRPSYGQPGNGASYGQPENKPSYGQPENKPSYGQPENRPSYGQPENRPS 130
P+ P N P + P N P+ PE +P+ + N+ P
Sbjct: 355 PDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIPEDSNKEVPEDVPMEPE 414
Query: 131 YGQPGNGASYGQPENKPSYGQPEN 154
+ N +PENK GQ E
Sbjct: 415 DDRDNNFNEPKKPENK-GDGQNEP 437
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 26.9 bits (59), Expect = 6.1
Identities = 19/90 (21%), Positives = 30/90 (33%)
Query: 44 PENTPPYAPAENRPSYGQSENSPSYGQPENKPSYGQPENRPSYGQPGNGASYGQPENKPS 103
P N P APA P S + + +N N A Q + +
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQ 232
Query: 104 YGQPENKPSYGQPENRPSYGQPENRPSYGQ 133
QP +P+ P +P + ++ S Q
Sbjct: 233 PVQPAQQPTPQNPAQQPPQTEQGHKRSREQ 262
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator. Shisa is a
transcription factor-type molecule that physically
interacts with immature forms of the Wnt receptor
Frizzled and the FGF receptor within the endoplasmic
reticulum to inhibit their post-translational maturation
and trafficking to the cell surface.
Length = 177
Score = 26.3 bits (58), Expect = 6.6
Identities = 14/52 (26%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 40 PYGQPENTPPYAPAENRPSYGQSENSPSY-GQPENKPSYGQPENRPSYGQPG 90
P QP +T P P P Y P G P S P Q
Sbjct: 126 PLPQPPSTAPSYPG---PQYQGYHPMPPQPGMPAPPYSLQYPPPGLLQPQGP 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.301 0.128 0.395
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,371,748
Number of extensions: 744219
Number of successful extensions: 848
Number of sequences better than 10.0: 1
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 204
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 55 (25.1 bits)