Query psy12460
Match_columns 171
No_of_seqs 182 out of 573
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 19:56:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0289|consensus 100.0 2.7E-63 5.9E-68 449.7 13.1 147 6-152 1-147 (506)
2 PF08606 Prp19: Prp19/Pso4-lik 100.0 3.6E-42 7.8E-47 245.8 9.4 70 69-138 1-70 (70)
3 PF04564 U-box: U-box domain; 99.7 2.6E-17 5.7E-22 116.1 4.0 55 4-59 3-58 (73)
4 smart00504 Ubox Modified RING 99.6 2E-16 4.3E-21 105.9 5.0 54 5-59 1-54 (63)
5 PF11789 zf-Nse: Zinc-finger o 99.3 3.4E-12 7.3E-17 87.6 2.9 45 4-48 10-56 (57)
6 KOG0883|consensus 99.2 1.2E-11 2.6E-16 113.1 3.6 56 6-62 41-96 (518)
7 KOG4642|consensus 98.7 3.7E-09 8E-14 92.2 1.2 54 5-59 211-265 (284)
8 KOG0826|consensus 98.6 1.2E-08 2.6E-13 91.5 2.3 59 2-60 297-355 (357)
9 PLN03208 E3 ubiquitin-protein 98.3 7.1E-07 1.5E-11 74.8 4.7 56 4-60 17-88 (193)
10 PF04641 Rtf2: Rtf2 RING-finge 98.1 3E-06 6.5E-11 72.3 4.2 58 6-63 35-96 (260)
11 KOG3039|consensus 97.8 1.1E-05 2.4E-10 70.8 3.2 57 5-62 221-281 (303)
12 KOG0823|consensus 97.8 2.2E-05 4.7E-10 67.5 4.5 56 4-60 46-104 (230)
13 PF13923 zf-C3HC4_2: Zinc fing 97.8 3E-05 6.6E-10 48.3 4.0 38 8-45 1-38 (39)
14 KOG2979|consensus 97.8 6.5E-06 1.4E-10 71.8 1.2 47 3-49 174-222 (262)
15 KOG0320|consensus 97.7 1.4E-05 3E-10 66.9 2.0 55 5-59 131-186 (187)
16 KOG3039|consensus 97.7 1.9E-05 4.2E-10 69.3 2.6 32 7-39 45-76 (303)
17 PF04641 Rtf2: Rtf2 RING-finge 97.6 7.2E-05 1.6E-09 63.9 4.1 57 4-61 112-171 (260)
18 KOG2042|consensus 97.5 9.6E-05 2.1E-09 73.8 5.0 66 5-87 870-935 (943)
19 COG5113 UFD2 Ubiquitin fusion 97.4 9.6E-05 2.1E-09 71.9 3.2 55 5-59 854-908 (929)
20 TIGR00599 rad18 DNA repair pro 97.3 0.00017 3.7E-09 66.1 3.1 53 5-58 26-78 (397)
21 KOG0317|consensus 97.2 0.00025 5.4E-09 62.9 2.5 57 2-59 236-292 (293)
22 PF13445 zf-RING_UBOX: RING-ty 97.1 0.00055 1.2E-08 44.7 3.4 31 8-40 1-35 (43)
23 PF13639 zf-RING_2: Ring finge 97.0 0.00096 2.1E-08 42.2 3.3 38 7-45 2-42 (44)
24 PF15227 zf-C3HC4_4: zinc fing 96.6 0.0019 4.2E-08 41.4 2.7 33 8-41 1-33 (42)
25 KOG2164|consensus 96.6 0.0017 3.7E-08 61.3 3.2 56 5-61 186-246 (513)
26 PF06416 DUF1076: Protein of u 96.6 0.0027 6E-08 49.6 3.7 55 3-57 38-97 (113)
27 PF13920 zf-C3HC4_3: Zinc fing 96.3 0.0077 1.7E-07 39.1 4.3 46 5-51 2-48 (50)
28 PHA02929 N1R/p28-like protein; 96.3 0.0034 7.3E-08 54.2 3.3 46 5-51 174-227 (238)
29 smart00184 RING Ring finger. E 96.3 0.004 8.8E-08 35.9 2.7 37 8-45 1-38 (39)
30 cd00162 RING RING-finger (Real 96.2 0.0065 1.4E-07 36.3 3.4 43 7-49 1-44 (45)
31 KOG0396|consensus 96.2 0.0025 5.3E-08 58.5 1.9 54 5-59 330-387 (389)
32 PF00097 zf-C3HC4: Zinc finger 96.1 0.012 2.6E-07 36.2 4.2 38 8-45 1-40 (41)
33 PF12678 zf-rbx1: RING-H2 zinc 95.0 0.03 6.5E-07 39.6 3.3 39 7-45 21-71 (73)
34 COG5627 MMS21 DNA repair prote 94.9 0.009 2E-07 52.4 0.7 53 4-56 188-244 (275)
35 PF02891 zf-MIZ: MIZ/SP-RING z 94.9 0.037 8.1E-07 36.8 3.4 46 4-49 1-50 (50)
36 COG5574 PEX10 RING-finger-cont 94.9 0.016 3.5E-07 51.1 2.1 54 2-56 212-267 (271)
37 KOG0287|consensus 94.6 0.0088 1.9E-07 55.0 -0.1 54 5-59 23-76 (442)
38 KOG0978|consensus 94.4 0.017 3.7E-07 56.6 1.3 54 5-59 643-697 (698)
39 KOG3113|consensus 93.2 0.084 1.8E-06 46.9 3.3 55 5-61 111-168 (293)
40 KOG0297|consensus 93.0 0.051 1.1E-06 49.4 1.7 53 5-57 21-73 (391)
41 COG5432 RAD18 RING-finger-cont 93.0 0.046 9.9E-07 49.6 1.3 45 5-50 25-69 (391)
42 KOG4628|consensus 92.9 0.1 2.2E-06 47.6 3.4 52 6-58 230-285 (348)
43 PF14835 zf-RING_6: zf-RING of 92.6 0.037 7.9E-07 39.6 0.2 52 5-58 7-58 (65)
44 KOG1645|consensus 91.9 0.48 1E-05 44.5 6.5 58 4-61 3-66 (463)
45 KOG1002|consensus 90.7 0.091 2E-06 51.0 0.6 48 5-53 536-588 (791)
46 PF07795 DUF1635: Protein of u 90.7 1 2.2E-05 38.7 6.9 22 117-138 39-60 (214)
47 COG5243 HRD1 HRD ubiquitin lig 89.7 0.46 1E-05 44.5 4.3 52 6-58 288-352 (491)
48 KOG2177|consensus 89.2 0.11 2.5E-06 40.5 0.0 43 4-47 12-54 (386)
49 KOG1813|consensus 88.8 0.17 3.6E-06 45.6 0.8 45 5-50 241-285 (313)
50 KOG2629|consensus 85.4 7.3 0.00016 35.2 9.1 57 79-138 132-188 (300)
51 COG5222 Uncharacterized conser 84.8 0.58 1.3E-05 42.9 2.0 56 3-58 272-329 (427)
52 KOG2660|consensus 84.8 0.22 4.7E-06 45.2 -0.7 49 5-53 15-63 (331)
53 PF14197 Cep57_CLD_2: Centroso 82.4 15 0.00033 26.1 8.4 62 76-137 5-66 (69)
54 KOG2879|consensus 82.4 1.4 3E-05 39.6 3.2 46 5-50 239-286 (298)
55 TIGR00570 cdk7 CDK-activating 79.0 2.2 4.7E-05 38.5 3.4 55 5-60 3-63 (309)
56 PF14634 zf-RING_5: zinc-RING 78.8 1.3 2.9E-05 28.0 1.5 39 8-47 2-43 (44)
57 KOG0802|consensus 78.0 1.2 2.7E-05 41.9 1.6 53 5-58 291-348 (543)
58 PHA02926 zinc finger-like prot 77.6 1.9 4.1E-05 37.8 2.5 46 5-51 170-230 (242)
59 PF12861 zf-Apc11: Anaphase-pr 72.8 3.6 7.7E-05 30.8 2.6 45 8-52 35-83 (85)
60 PRK00846 hypothetical protein; 71.6 34 0.00074 25.0 7.5 48 102-152 28-75 (77)
61 PRK02119 hypothetical protein; 69.4 25 0.00054 25.1 6.3 49 100-151 22-70 (73)
62 PRK02793 phi X174 lysis protei 69.2 26 0.00056 24.9 6.3 50 99-151 20-69 (72)
63 PF13801 Metal_resist: Heavy-m 67.7 40 0.00086 23.7 7.5 54 83-136 52-105 (125)
64 PRK11546 zraP zinc resistance 67.4 31 0.00066 28.0 7.1 59 79-138 50-109 (143)
65 KOG4159|consensus 66.7 3 6.6E-05 38.7 1.4 40 5-45 84-123 (398)
66 KOG0311|consensus 66.4 0.47 1E-05 43.8 -3.9 48 4-51 42-90 (381)
67 PF14449 PT-TG: Pre-toxin TG 66.2 2.7 5.8E-05 30.3 0.7 15 40-54 26-40 (79)
68 PRK11020 hypothetical protein; 65.9 19 0.00041 28.6 5.4 48 91-140 6-53 (118)
69 PRK11088 rrmA 23S rRNA methylt 65.7 3.3 7.1E-05 34.9 1.3 26 4-30 1-29 (272)
70 KOG0883|consensus 62.7 4.1 8.9E-05 38.6 1.5 56 5-60 101-161 (518)
71 PF02183 HALZ: Homeobox associ 61.8 20 0.00043 23.6 4.2 26 79-104 15-40 (45)
72 KOG1001|consensus 61.8 2.6 5.7E-05 41.4 -0.0 75 6-82 455-532 (674)
73 PF09538 FYDLN_acid: Protein o 61.5 4.6 0.0001 31.0 1.3 25 7-31 11-39 (108)
74 PRK04406 hypothetical protein; 60.3 46 0.00099 23.9 6.2 49 100-151 24-72 (75)
75 PRK10884 SH3 domain-containing 59.7 43 0.00094 28.3 7.0 63 75-140 92-154 (206)
76 TIGR03752 conj_TIGR03752 integ 59.7 35 0.00076 32.7 7.0 66 72-137 62-128 (472)
77 smart00744 RINGv The RING-vari 59.4 10 0.00022 24.9 2.5 38 8-45 2-47 (49)
78 COG5324 Uncharacterized conser 59.1 9.3 0.0002 37.5 3.1 37 79-115 141-177 (758)
79 PRK00736 hypothetical protein; 58.1 55 0.0012 23.0 6.2 39 100-141 18-56 (68)
80 TIGR02300 FYDLN_acid conserved 57.9 5.3 0.00012 32.1 1.1 25 7-31 11-39 (129)
81 PF08232 Striatin: Striatin fa 57.4 93 0.002 24.4 9.5 51 73-123 1-58 (134)
82 PF05701 WEMBL: Weak chloropla 55.0 74 0.0016 30.1 8.4 40 78-117 118-157 (522)
83 COG5152 Uncharacterized conser 54.8 4.2 9.1E-05 35.5 0.1 44 5-49 196-239 (259)
84 PF12325 TMF_TATA_bd: TATA ele 54.6 46 0.001 26.0 5.9 58 71-135 11-68 (120)
85 PRK00295 hypothetical protein; 54.2 65 0.0014 22.6 6.1 41 100-143 18-58 (68)
86 PRK10884 SH3 domain-containing 54.1 71 0.0015 27.0 7.3 73 65-140 86-168 (206)
87 PF08793 2C_adapt: 2-cysteine 54.0 12 0.00026 23.8 2.0 21 34-54 4-24 (37)
88 COG4530 Uncharacterized protei 51.1 8.4 0.00018 30.7 1.2 29 7-35 11-43 (129)
89 KOG2817|consensus 49.7 16 0.00035 34.1 3.0 53 5-58 334-392 (394)
90 PF05064 Nsp1_C: Nsp1-like C-t 49.6 35 0.00075 26.1 4.4 57 83-142 46-102 (116)
91 KOG0827|consensus 49.3 12 0.00027 35.3 2.2 46 1-47 1-52 (465)
92 PF06156 DUF972: Protein of un 49.1 43 0.00093 25.7 4.8 49 77-139 9-57 (107)
93 PF06075 DUF936: Plant protein 48.4 22 0.00048 34.6 3.9 52 108-159 331-382 (579)
94 PF02865 STAT_int: STAT protei 48.0 96 0.0021 24.2 6.7 53 74-127 60-115 (124)
95 KOG0824|consensus 47.2 11 0.00023 34.4 1.4 50 4-54 6-56 (324)
96 PF02183 HALZ: Homeobox associ 46.0 55 0.0012 21.5 4.3 29 79-107 8-36 (45)
97 PF15186 TEX13: Testis-express 45.3 1.5E+02 0.0033 24.5 7.7 29 22-52 5-40 (152)
98 KOG4467|consensus 44.2 29 0.00063 32.9 3.8 45 78-122 437-496 (557)
99 KOG3113|consensus 44.1 22 0.00048 31.9 2.9 57 6-62 35-92 (293)
100 COG5194 APC11 Component of SCF 43.2 13 0.00027 28.1 1.1 36 18-53 48-83 (88)
101 PF06657 Cep57_MT_bd: Centroso 43.0 1.2E+02 0.0027 21.8 6.2 37 63-99 4-40 (79)
102 TIGR00219 mreC rod shape-deter 41.6 1.1E+02 0.0024 26.7 6.9 14 123-136 96-109 (283)
103 PRK02195 V-type ATP synthase s 40.9 1.1E+02 0.0024 25.6 6.4 37 78-114 26-62 (201)
104 PF07851 TMPIT: TMPIT-like pro 40.4 1.8E+02 0.0039 26.7 8.1 60 81-140 2-61 (330)
105 PF04102 SlyX: SlyX; InterPro 40.2 61 0.0013 22.6 4.1 37 99-138 16-52 (69)
106 KOG0774|consensus 39.3 13 0.00028 33.7 0.7 74 92-171 102-175 (334)
107 PRK04325 hypothetical protein; 38.9 1.4E+02 0.0031 21.2 6.2 39 100-141 22-60 (74)
108 PHA02047 phage lambda Rz1-like 38.8 1.7E+02 0.0036 22.7 6.6 73 80-161 21-96 (101)
109 PF04420 CHD5: CHD5-like prote 38.0 92 0.002 25.0 5.4 53 86-140 36-88 (161)
110 KOG4196|consensus 37.9 1.1E+02 0.0024 24.8 5.7 39 89-141 80-118 (135)
111 PF11656 DUF3811: YjbD family 37.9 69 0.0015 24.2 4.3 47 90-136 12-61 (87)
112 PF11559 ADIP: Afadin- and alp 37.9 1.9E+02 0.0041 22.4 7.4 63 76-138 59-121 (151)
113 PF10498 IFT57: Intra-flagella 37.4 2.3E+02 0.0051 25.9 8.5 79 72-150 237-329 (359)
114 PF08581 Tup_N: Tup N-terminal 36.8 1.2E+02 0.0027 22.0 5.4 44 75-118 3-56 (79)
115 PF14357 DUF4404: Domain of un 36.4 49 0.0011 24.2 3.3 40 94-136 1-40 (85)
116 KOG2470|consensus 36.1 1.4E+02 0.0031 28.4 6.9 64 80-143 377-443 (510)
117 PF13417 GST_N_3: Glutathione 35.7 43 0.00093 22.5 2.7 30 15-44 45-74 (75)
118 PF02881 SRP54_N: SRP54-type p 35.7 46 0.001 22.5 2.9 36 92-127 16-51 (75)
119 smart00338 BRLZ basic region l 35.5 1.2E+02 0.0025 20.4 4.9 31 78-108 28-58 (65)
120 PLN02777 photosystem I P subun 34.6 39 0.00084 28.3 2.8 21 68-88 70-90 (167)
121 PF10174 Cast: RIM-binding pro 33.6 1.4E+02 0.0031 30.2 7.0 62 77-139 54-135 (775)
122 PF06309 Torsin: Torsin; Inte 33.5 48 0.001 26.3 3.0 32 96-127 13-44 (127)
123 PF11793 FANCL_C: FANCL C-term 33.1 21 0.00045 25.0 0.8 35 5-39 2-43 (70)
124 COG2900 SlyX Uncharacterized p 32.4 2E+02 0.0044 21.0 7.3 54 95-151 15-69 (72)
125 TIGR03752 conj_TIGR03752 integ 32.1 1.9E+02 0.0042 27.8 7.2 69 72-140 69-138 (472)
126 PF11932 DUF3450: Protein of u 30.7 3.3E+02 0.0071 22.9 7.9 58 82-139 41-98 (251)
127 PF10281 Ish1: Putative stress 30.6 30 0.00066 21.3 1.2 29 29-58 5-33 (38)
128 PF11365 DUF3166: Protein of u 30.3 2.1E+02 0.0046 21.8 5.9 45 93-144 4-48 (96)
129 KOG3156|consensus 29.9 1.1E+02 0.0025 26.6 4.9 32 79-110 112-143 (220)
130 COG4008 Predicted metal-bindin 29.8 1.1E+02 0.0023 25.1 4.5 45 91-138 95-139 (153)
131 PF12709 Kinetocho_Slk19: Cent 29.8 1.1E+02 0.0024 23.0 4.3 28 78-105 51-78 (87)
132 PRK13922 rod shape-determining 29.4 1.4E+02 0.0031 25.2 5.5 45 87-135 66-110 (276)
133 COG1393 ArsC Arsenate reductas 28.9 21 0.00044 27.5 0.2 51 31-100 15-69 (117)
134 PF00681 Plectin: Plectin repe 28.7 10 0.00022 24.3 -1.3 23 32-54 3-26 (45)
135 PRK13729 conjugal transfer pil 28.6 2.1E+02 0.0047 27.5 6.9 46 94-139 80-125 (475)
136 TIGR01843 type_I_hlyD type I s 28.1 3.6E+02 0.0078 23.4 7.8 25 80-104 141-165 (423)
137 PF12277 DUF3618: Protein of u 28.0 1.7E+02 0.0036 19.1 4.5 18 94-111 7-24 (49)
138 PF09738 DUF2051: Double stran 27.9 2.1E+02 0.0046 25.7 6.5 57 81-137 103-166 (302)
139 PF00170 bZIP_1: bZIP transcri 27.7 1.9E+02 0.0042 19.3 5.3 32 77-108 27-58 (64)
140 KOG2169|consensus 27.1 45 0.00098 32.5 2.2 54 3-59 304-364 (636)
141 PRK07857 hypothetical protein; 26.8 1.4E+02 0.0031 23.0 4.6 18 41-58 16-33 (106)
142 smart00834 CxxC_CXXC_SSSS Puta 26.7 39 0.00085 20.3 1.2 35 1-49 1-35 (41)
143 PLN02985 squalene monooxygenas 26.5 1.9E+02 0.0042 27.1 6.3 70 84-160 371-449 (514)
144 PRK00373 V-type ATP synthase s 26.1 1.7E+02 0.0037 24.2 5.2 33 78-110 27-59 (204)
145 KOG2150|consensus 26.0 1.1E+02 0.0023 30.2 4.5 82 29-114 79-170 (575)
146 PF09738 DUF2051: Double stran 25.6 4.5E+02 0.0098 23.6 8.1 68 74-141 82-163 (302)
147 PF05400 FliT: Flagellar prote 25.4 2.1E+02 0.0046 19.1 6.6 36 103-140 42-77 (84)
148 TIGR01807 CM_P2 chorismate mut 25.4 2.2E+02 0.0047 19.7 5.0 33 94-126 3-35 (76)
149 cd00427 Ribosomal_L29_HIP Ribo 25.4 1.5E+02 0.0032 19.9 3.9 45 79-126 9-53 (57)
150 KOG4196|consensus 25.1 96 0.0021 25.2 3.4 24 80-103 85-108 (135)
151 smart00503 SynN Syntaxin N-ter 24.7 2.6E+02 0.0057 19.9 7.1 38 78-115 3-40 (117)
152 TIGR02449 conserved hypothetic 24.7 2.6E+02 0.0057 19.8 6.7 33 85-117 16-48 (65)
153 PRK10515 hypothetical protein; 24.3 1.5E+02 0.0032 22.6 4.1 47 91-137 15-64 (90)
154 KOG4421|consensus 24.0 98 0.0021 29.7 3.8 22 77-98 329-350 (637)
155 PF04156 IncA: IncA protein; 23.9 3.7E+02 0.0079 21.3 8.5 41 84-124 110-150 (191)
156 PF14197 Cep57_CLD_2: Centroso 23.8 2.7E+02 0.0058 19.7 5.8 52 88-139 3-61 (69)
157 cd07680 F-BAR_PACSIN1 The F-BA 23.8 4.2E+02 0.0091 23.1 7.4 61 79-139 60-126 (258)
158 PF13870 DUF4201: Domain of un 23.7 3.1E+02 0.0067 21.8 6.2 31 114-144 108-138 (177)
159 PF05701 WEMBL: Weak chloropla 23.7 4E+02 0.0088 25.2 7.8 58 83-140 302-359 (522)
160 KOG0994|consensus 23.4 1.9E+02 0.004 31.6 5.8 29 76-104 1267-1295(1758)
161 smart00531 TFIIE Transcription 23.2 56 0.0012 25.6 1.8 39 16-54 97-137 (147)
162 PRK07191 flgK flagellar hook-a 23.2 4.8E+02 0.01 24.2 8.1 72 71-142 102-183 (456)
163 KOG4005|consensus 23.0 2.2E+02 0.0047 25.7 5.5 36 85-120 120-155 (292)
164 PF10475 DUF2450: Protein of u 23.0 4.7E+02 0.01 22.5 7.6 54 77-137 68-121 (291)
165 smart00250 PLEC Plectin repeat 22.9 30 0.00064 21.2 0.1 18 39-56 10-28 (38)
166 PRK13922 rod shape-determining 22.9 2.6E+02 0.0057 23.7 5.9 21 87-107 73-93 (276)
167 PRK09039 hypothetical protein; 22.7 2.6E+02 0.0057 25.1 6.1 22 117-138 136-157 (343)
168 KOG2930|consensus 22.6 50 0.0011 26.0 1.3 28 23-50 80-107 (114)
169 PF08317 Spc7: Spc7 kinetochor 22.6 4.4E+02 0.0096 23.2 7.4 34 75-108 208-241 (325)
170 KOG1962|consensus 22.3 3E+02 0.0066 23.8 6.1 63 81-143 149-211 (216)
171 PRK09039 hypothetical protein; 22.1 5.4E+02 0.012 23.1 8.0 16 93-108 140-155 (343)
172 COG1394 NtpD Archaeal/vacuolar 21.9 5.1E+02 0.011 22.2 8.1 61 77-139 25-85 (211)
173 TIGR01462 greA transcription e 21.9 2.6E+02 0.0056 21.9 5.3 27 113-139 44-70 (151)
174 PHA02562 46 endonuclease subun 21.8 4.3E+02 0.0093 24.2 7.5 29 80-108 217-245 (562)
175 PRK15322 invasion protein OrgB 21.8 2.2E+02 0.0047 24.8 5.1 49 78-129 59-108 (210)
176 PF01017 STAT_alpha: STAT prot 21.7 3.2E+02 0.0069 22.2 6.0 49 75-123 120-168 (182)
177 PRK01885 greB transcription el 21.6 4.3E+02 0.0093 21.2 6.8 63 75-138 9-74 (157)
178 PF01484 Col_cuticle_N: Nemato 21.6 1.9E+02 0.0042 18.1 3.8 31 72-102 19-49 (53)
179 TIGR02209 ftsL_broad cell divi 21.4 1E+02 0.0022 21.3 2.7 17 79-95 41-57 (85)
180 PRK14127 cell division protein 21.3 2.8E+02 0.006 21.5 5.2 35 74-108 28-62 (109)
181 PF15458 NTR2: Nineteen comple 21.3 4.5E+02 0.0097 22.7 7.1 14 68-81 197-210 (254)
182 PRK00226 greA transcription el 21.3 3E+02 0.0066 21.6 5.6 27 113-139 49-75 (157)
183 KOG4642|consensus 21.0 9.1 0.0002 34.2 -3.4 80 6-87 26-133 (284)
184 KOG2462|consensus 21.0 88 0.0019 28.2 2.7 37 5-41 187-239 (279)
185 PF05591 DUF770: Protein of un 20.9 3.2E+02 0.007 22.3 5.8 43 91-137 113-155 (157)
186 COG0172 SerS Seryl-tRNA synthe 20.9 3.8E+02 0.0083 25.4 7.0 39 76-114 29-67 (429)
187 PF00956 NAP: Nucleosome assem 20.9 2.6E+02 0.0056 23.5 5.4 37 77-113 6-42 (244)
188 PRK14126 cell division protein 20.9 1.2E+02 0.0025 22.1 2.9 20 88-107 63-82 (85)
189 PF05010 TACC: Transforming ac 20.7 4.1E+02 0.0089 22.6 6.6 58 85-142 32-93 (207)
190 PF04822 Takusan: Takusan; In 20.7 1.2E+02 0.0025 22.5 2.9 19 121-139 29-47 (84)
191 PF10473 CENP-F_leu_zip: Leuci 20.7 4.5E+02 0.0098 21.1 8.5 63 75-137 9-71 (140)
192 KOG0642|consensus 20.6 2E+02 0.0043 28.4 5.2 16 72-87 16-31 (577)
193 PRK07720 fliJ flagellar biosyn 20.6 3.8E+02 0.0083 20.5 6.0 43 95-137 13-56 (146)
194 PF06798 PrkA: PrkA serine pro 20.5 63 0.0014 28.1 1.7 12 42-53 138-149 (254)
195 PF05499 DMAP1: DNA methyltran 20.5 2E+02 0.0044 24.2 4.6 35 82-116 133-167 (176)
196 PF15058 Speriolin_N: Sperioli 20.4 2E+02 0.0043 24.8 4.6 35 83-139 12-46 (200)
197 PRK14089 ipid-A-disaccharide s 20.3 2E+02 0.0042 26.0 4.8 54 71-126 279-346 (347)
198 PF15456 Uds1: Up-regulated Du 20.1 4.3E+02 0.0094 20.7 7.6 36 83-118 22-57 (124)
No 1
>KOG0289|consensus
Probab=100.00 E-value=2.7e-63 Score=449.72 Aligned_cols=147 Identities=69% Similarity=1.041 Sum_probs=142.5
Q ss_pred ccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccCCCCCCCCCCCCCCChhHHHHHhHHHH
Q psy12460 6 TKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKVSPVTKPKPPQATSIPAILKMLQDEW 85 (171)
Q Consensus 6 ~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk~~~~~~pr~~~~tSIP~lL~~lQnEW 85 (171)
|+|+|||++|++||+||+||+|||||+||+||+++|+|||||+||+.+|||+||....++|+||++||||+||++|||||
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~v~pk~~satSIPalL~~lQdEW 80 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPAQVRPKPPSATSIPALLKTLQDEW 80 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccccccccCCCCCccchHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCCCCCCCCCCc
Q psy12460 86 DAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQP 152 (171)
Q Consensus 86 Da~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~~~~~~~~~~ 152 (171)
|++|||+|+|||||+++|||||||||||||||||||||.|||||||++|+++++++|+..+.++|.+
T Consensus 81 DavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav~~~ 147 (506)
T KOG0289|consen 81 DAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAVPSL 147 (506)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999876555553
No 2
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=100.00 E-value=3.6e-42 Score=245.75 Aligned_cols=70 Identities=71% Similarity=1.051 Sum_probs=68.5
Q ss_pred CCCCChhHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhC
Q psy12460 69 PQATSIPAILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLK 138 (171)
Q Consensus 69 ~~~tSIP~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~ 138 (171)
|++||||+||++|||||||+|||+|+|||||+++|||||+||||||||||||||++||||++|++|++++
T Consensus 1 ~~~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 1 PTATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999875
No 3
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.68 E-value=2.6e-17 Score=116.08 Aligned_cols=55 Identities=29% Similarity=0.541 Sum_probs=45.6
Q ss_pred ccccccCCCCCCCCceecCCCCeeeehHHHHHHHHh-cCCCCCCCCCCCccCccccC
Q psy12460 4 FGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKE-NGTDPINAERLTLEQLIDIK 59 (171)
Q Consensus 4 ~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~-~G~dPITgepLt~~DLIplk 59 (171)
..|.|+||+++|+|||++| +|++|||+.|++|+++ +++||+||++++.+||+++.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGGB-TTTSSB-SSEEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H
T ss_pred cccCCcCcCcHhhCceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH
Confidence 3699999999999999998 6999999999999999 67899999999999999983
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.64 E-value=2e-16 Score=105.86 Aligned_cols=54 Identities=41% Similarity=0.610 Sum_probs=51.0
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIK 59 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk 59 (171)
.|+|+||++++++||+++ +||+|+|+.|++|++++++||+||++++.+||+++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 1 EFLCPISLEVMKDPVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred CcCCcCCCCcCCCCEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCH
Confidence 478999999999999997 799999999999999999999999999999999984
No 5
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=99.25 E-value=3.4e-12 Score=87.59 Aligned_cols=45 Identities=33% Similarity=0.458 Sum_probs=34.1
Q ss_pred ccccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcC--CCCCCCC
Q psy12460 4 FGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENG--TDPINAE 48 (171)
Q Consensus 4 ~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G--~dPITge 48 (171)
.++.|+||+.++++||.+.++||+|||+.|++||+.++ .||++|-
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC 56 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGC 56 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCC
Confidence 57999999999999999999999999999999996554 4999984
No 6
>KOG0883|consensus
Probab=99.18 E-value=1.2e-11 Score=113.08 Aligned_cols=56 Identities=29% Similarity=0.501 Sum_probs=53.4
Q ss_pred ccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccCCCC
Q psy12460 6 TKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKVSP 62 (171)
Q Consensus 6 ~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk~~~ 62 (171)
.+|++|+.|+++|||++ +|.|||...|.+||+++|++||||++|+.+|||++++..
T Consensus 41 ~hC~lt~~Pfe~PvC~~-dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~F~K 96 (518)
T KOG0883|consen 41 NHCSLTMLPFEDPVCTV-DGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLKFHK 96 (518)
T ss_pred hhceeccccccCccccc-CCcEEeeehhhHHHHHcCCCCCCCCccccccceeeeecc
Confidence 48999999999999997 699999999999999999999999999999999999854
No 7
>KOG4642|consensus
Probab=98.71 E-value=3.7e-09 Score=92.22 Aligned_cols=54 Identities=30% Similarity=0.381 Sum_probs=50.6
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCC-CCCCCCCCCccCccccC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGT-DPINAERLTLEQLIDIK 59 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~-dPITgepLt~~DLIplk 59 (171)
.++|.||.+++++||++| ||.+|||..|+++++.-|. ||||+.+|+..++||+.
T Consensus 211 ~lcgkIt~el~~~pvi~p-sgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~ 265 (284)
T KOG4642|consen 211 YLCGKITLELMREPVITP-SGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNL 265 (284)
T ss_pred hhhhhhhHHhhcCCccCc-cccchhHHHHHHHHHHhccCCchhcccCCHHhhccch
Confidence 467889999999999999 7999999999999999886 99999999999999984
No 8
>KOG0826|consensus
Probab=98.64 E-value=1.2e-08 Score=91.48 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=54.7
Q ss_pred CcccccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccCC
Q psy12460 2 PIFGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKV 60 (171)
Q Consensus 2 ~~~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk~ 60 (171)
|.+.=.|+++.+...+|.+..+||+||+.++|.+|+.++|+|||||.|+++++||++..
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHhc
Confidence 45667899999999999998899999999999999999999999999999999998864
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.31 E-value=7.1e-07 Score=74.84 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=50.3
Q ss_pred ccccccCCCCCCCCceecCCCCeeeehHHHHHHHHh----------------cCCCCCCCCCCCccCccccCC
Q psy12460 4 FGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKE----------------NGTDPINAERLTLEQLIDIKV 60 (171)
Q Consensus 4 ~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~----------------~G~dPITgepLt~~DLIplk~ 60 (171)
..+.|+|+++..++||+++ +||+|.+..|.+|+.. ..+||+-+.+++.++|+|++.
T Consensus 17 ~~~~CpICld~~~dPVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred CccCCccCCCcCCCcEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 3588999999999999996 8999999999999853 236999999999999999985
No 10
>PF04641 Rtf2: Rtf2 RING-finger
Probab=98.10 E-value=3e-06 Score=72.33 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=48.5
Q ss_pred ccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCC---CCCCCCCC-CccCccccCCCCC
Q psy12460 6 TKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGT---DPINAERL-TLEQLIDIKVSPV 63 (171)
Q Consensus 6 ~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~---dPITgepL-t~~DLIplk~~~~ 63 (171)
.+|+||++|.+.|||+-.-|++|++..|.+||.+.+. -|.++..+ ++.||+++++...
T Consensus 35 ~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~~n 96 (260)
T PF04641_consen 35 THCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFTKN 96 (260)
T ss_pred CcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceeeEEeEec
Confidence 5899999999999987678999999999999998864 35555444 7899999998643
No 11
>KOG3039|consensus
Probab=97.85 E-value=1.1e-05 Score=70.76 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=50.0
Q ss_pred cccccCCCCCCCC----ceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccCCCC
Q psy12460 5 GTKTVMSNEVPEH----PVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKVSP 62 (171)
Q Consensus 5 s~~CaISge~~~~----PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk~~~ 62 (171)
.|+|+++.....+ .|..| ||+||.+.+.|++|...+.|||||+||+.+|+|+++-..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~-sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrGG 281 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRP-SGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRGG 281 (303)
T ss_pred ceecccchhhhcCccceEEecc-CCcEeeHHHHHHhccccccccCCCCcCcccceEeeeccc
Confidence 5889999887666 45565 899999999999999999999999999999999998643
No 12
>KOG0823|consensus
Probab=97.82 E-value=2.2e-05 Score=67.53 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=50.8
Q ss_pred ccccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcC--C-CCCCCCCCCccCccccCC
Q psy12460 4 FGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENG--T-DPINAERLTLEQLIDIKV 60 (171)
Q Consensus 4 ~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G--~-dPITgepLt~~DLIplk~ 60 (171)
..|-|.|+++..+|||||. +||.|+=-+|.+|+..++ + |||=.-..+.+.||||+-
T Consensus 46 ~~FdCNICLd~akdPVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3578999999999999997 899999999999998654 3 899999999999999985
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.82 E-value=3e-05 Score=48.28 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=31.9
Q ss_pred ccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCC
Q psy12460 8 TVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPI 45 (171)
Q Consensus 8 CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPI 45 (171)
|+|..+.+.+|++....||+|-+.-|++|++.+.+||+
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcC
Confidence 88999999999655569999999999999999777886
No 14
>KOG2979|consensus
Probab=97.81 E-value=6.5e-06 Score=71.84 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=42.9
Q ss_pred cccccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcC--CCCCCCCC
Q psy12460 3 IFGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENG--TDPINAER 49 (171)
Q Consensus 3 ~~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G--~dPITgep 49 (171)
..|+.|+||..+-.+||+|.++||||||..|+.++..+- .||+-|.+
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 368999999999999999999999999999999998743 49999987
No 15
>KOG0320|consensus
Probab=97.75 E-value=1.4e-05 Score=66.86 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=49.8
Q ss_pred cccccCCCCCCCCce-ecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccC
Q psy12460 5 GTKTVMSNEVPEHPV-VSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIK 59 (171)
Q Consensus 5 s~~CaISge~~~~PV-vSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk 59 (171)
-+-|+|++.....-+ ++.++||||.+.+|+.-++...+||+=+..++..++++|+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 478999999987766 6678999999999999999999999999999999999885
No 16
>KOG3039|consensus
Probab=97.72 E-value=1.9e-05 Score=69.29 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=29.7
Q ss_pred cccCCCCCCCCceecCCCCeeeehHHHHHHHHh
Q psy12460 7 KTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKE 39 (171)
Q Consensus 7 ~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~ 39 (171)
+|+++++|+++|||+| .||+|||..|.+||-.
T Consensus 45 cCsLtLqPc~dPvit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 45 CCSLTLQPCRDPVITP-DGYLFDREAILEYILA 76 (303)
T ss_pred eeeeecccccCCccCC-CCeeeeHHHHHHHHHH
Confidence 6889999999999998 5999999999999964
No 17
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.58 E-value=7.2e-05 Score=63.92 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=46.7
Q ss_pred ccccccCCCCCCCC---ceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccCCC
Q psy12460 4 FGTKTVMSNEVPEH---PVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKVS 61 (171)
Q Consensus 4 ~s~~CaISge~~~~---PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk~~ 61 (171)
..|+||||+..|.. =|.-..|||||..++|.+. ...+.||++|++++.+|+|+|+-.
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~Lnp~ 171 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDIIPLNPP 171 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEEEecCC
Confidence 46899999999853 3333358999999999998 346679999999999999999754
No 18
>KOG2042|consensus
Probab=97.55 E-value=9.6e-05 Score=73.78 Aligned_cols=66 Identities=26% Similarity=0.289 Sum_probs=58.7
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccCCCCCCCCCCCCCCChhHHHHHhHHH
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKVSPVTKPKPPQATSIPAILKMLQDE 84 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk~~~~~~pr~~~~tSIP~lL~~lQnE 84 (171)
.|.=||.+-+|.+||+.|.||++-+|+.|+.|+-..++||++++||+.+++++. .-|+..+++
T Consensus 870 ef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn-----------------~eLK~kI~~ 932 (943)
T KOG2042|consen 870 EFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPN-----------------EELKAKIRC 932 (943)
T ss_pred hhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCC-----------------HHHHHHHHH
Confidence 356688899999999999999999999999999999999999999999999886 347777778
Q ss_pred HHH
Q psy12460 85 WDA 87 (171)
Q Consensus 85 WDa 87 (171)
|+.
T Consensus 933 ~~~ 935 (943)
T KOG2042|consen 933 WIK 935 (943)
T ss_pred HHH
Confidence 864
No 19
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=9.6e-05 Score=71.92 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=51.2
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIK 59 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk 59 (171)
.|.-|+...+|+|||+.|.||..-||+.|..|+-..|+||+++.||+.||.+|+.
T Consensus 854 eFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~ 908 (929)
T COG5113 854 EFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNA 908 (929)
T ss_pred hhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCH
Confidence 4666788899999999999999999999999999999999999999999999874
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.30 E-value=0.00017 Score=66.15 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=46.9
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCcccc
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDI 58 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIpl 58 (171)
.|.|+|+.+.+.+||+++ +||+|+..+|..|+...+.||+=+.++..++|.++
T Consensus 26 ~l~C~IC~d~~~~Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N 78 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSN 78 (397)
T ss_pred ccCCCcCchhhhCccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccccCccc
Confidence 589999999999999986 89999999999999988899999888776666544
No 21
>KOG0317|consensus
Probab=97.15 E-value=0.00025 Score=62.90 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=52.0
Q ss_pred CcccccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccC
Q psy12460 2 PIFGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIK 59 (171)
Q Consensus 2 ~~~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk 59 (171)
|-.+..|.|+++.+.+|-++| +||+|+=++|..|..+...||+=+++....++|-+.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCCceEEEecCCCCCCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcceeeec
Confidence 445689999999999999999 799999999999999999999999999999988653
No 22
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.14 E-value=0.00055 Score=44.68 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=21.8
Q ss_pred ccCCCCCCCC----ceecCCCCeeeehHHHHHHHHhc
Q psy12460 8 TVMSNEVPEH----PVVSPISGSVFEKRLIEKYIKEN 40 (171)
Q Consensus 8 CaISge~~~~----PVvSp~SG~VFEr~lIekyI~~~ 40 (171)
|+|+.+ +.+ |++.+ +||+|.+..|+++++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 888 99998 89999999999999865
No 23
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.97 E-value=0.00096 Score=42.21 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=30.8
Q ss_pred cccCCCCCC---CCceecCCCCeeeehHHHHHHHHhcCCCCC
Q psy12460 7 KTVMSNEVP---EHPVVSPISGSVFEKRLIEKYIKENGTDPI 45 (171)
Q Consensus 7 ~CaISge~~---~~PVvSp~SG~VFEr~lIekyI~~~G~dPI 45 (171)
.|+|..+.+ +.++..+ .||+|-+..|.+|++.+++||+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~ 42 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPV 42 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCc
Confidence 488888876 3455565 9999999999999999999996
No 24
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.61 E-value=0.0019 Score=41.43 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=28.3
Q ss_pred ccCCCCCCCCceecCCCCeeeehHHHHHHHHhcC
Q psy12460 8 TVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENG 41 (171)
Q Consensus 8 CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G 41 (171)
|+|..+.+++||..+ .||+|-++.|.+|.++.+
T Consensus 1 CpiC~~~~~~Pv~l~-CGH~FC~~Cl~~~~~~~~ 33 (42)
T PF15227_consen 1 CPICLDLFKDPVSLP-CGHSFCRSCLERLWKEPS 33 (42)
T ss_dssp ETTTTSB-SSEEE-S-SSSEEEHHHHHHHHCCSS
T ss_pred CCccchhhCCccccC-CcCHHHHHHHHHHHHccC
Confidence 899999999999996 899999999999998653
No 25
>KOG2164|consensus
Probab=96.56 E-value=0.0017 Score=61.34 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=50.2
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhc-----CCCCCCCCCCCccCccccCCC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKEN-----GTDPINAERLTLEQLIDIKVS 61 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~-----G~dPITgepLt~~DLIplk~~ 61 (171)
.+.|+|+++++..|+.+- |||+|+=.+|..|+... +.||+=+...+..||.++...
T Consensus 186 ~~~CPICL~~~~~p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCCcccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 578999999999999995 99999999999999643 579999999999999988763
No 26
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=96.56 E-value=0.0027 Score=49.58 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=35.8
Q ss_pred cccccccCCCCCCCCceecCCCC-----eeeehHHHHHHHHhcCCCCCCCCCCCccCccc
Q psy12460 3 IFGTKTVMSNEVPEHPVVSPISG-----SVFEKRLIEKYIKENGTDPINAERLTLEQLID 57 (171)
Q Consensus 3 ~~s~~CaISge~~~~PVvSp~SG-----~VFEr~lIekyI~~~G~dPITgepLt~~DLIp 57 (171)
-..+.|||+++.|++-|.-..++ ..||+..+.+-+.+++.+|+|+||++.+-+|.
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 97 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVS 97 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEec
Confidence 35678999999999998754332 48999999999999999999999999987764
No 27
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.32 E-value=0.0077 Score=39.07 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=39.9
Q ss_pred cccccCCCCCCCCceecCCCCee-eehHHHHHHHHhcCCCCCCCCCCC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSV-FEKRLIEKYIKENGTDPINAERLT 51 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~V-FEr~lIekyI~~~G~dPITgepLt 51 (171)
+..|.|.++.+.++++.| .||. |....+.+|++..++||+=+++++
T Consensus 2 ~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 467999999999999998 7999 999999999998889999877654
No 28
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.32 E-value=0.0034 Score=54.18 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=38.2
Q ss_pred cccccCCCCCCCCc--------eecCCCCeeeehHHHHHHHHhcCCCCCCCCCCC
Q psy12460 5 GTKTVMSNEVPEHP--------VVSPISGSVFEKRLIEKYIKENGTDPINAERLT 51 (171)
Q Consensus 5 s~~CaISge~~~~P--------VvSp~SG~VFEr~lIekyI~~~G~dPITgepLt 51 (171)
..-|+|+++...++ +++ .+||+|.+..|.+|++.+++||+=+.++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~-~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILS-NCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecC-CCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 46799999986653 444 58999999999999999999999877654
No 29
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.32 E-value=0.004 Score=35.89 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=32.0
Q ss_pred ccCCCCCCCCceecCCCCeeeehHHHHHHHH-hcCCCCC
Q psy12460 8 TVMSNEVPEHPVVSPISGSVFEKRLIEKYIK-ENGTDPI 45 (171)
Q Consensus 8 CaISge~~~~PVvSp~SG~VFEr~lIekyI~-~~G~dPI 45 (171)
|+|.++..+++++.+ .||+|....|..|++ .+++||+
T Consensus 1 C~iC~~~~~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~ 38 (39)
T smart00184 1 CPICLEELKDPVVLP-CGHTFCRSCIRKWLKSGNNTCPI 38 (39)
T ss_pred CCcCccCCCCcEEec-CCChHHHHHHHHHHHhCcCCCCC
Confidence 788888889999997 899999999999998 4556875
No 30
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.23 E-value=0.0065 Score=36.29 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=36.3
Q ss_pred cccCCCCCCCCceecCCCCeeeehHHHHHHHHh-cCCCCCCCCC
Q psy12460 7 KTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKE-NGTDPINAER 49 (171)
Q Consensus 7 ~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~-~G~dPITgep 49 (171)
.|+|.++.+.+++..+..||.|.+..+..|++. +++||+=+.+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 388999998888888779999999999999998 6679975543
No 31
>KOG0396|consensus
Probab=96.20 E-value=0.0025 Score=58.49 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=48.3
Q ss_pred cccccCCCCCCCC---ceecCCCCeeeehHHHHHHHHhcC-CCCCCCCCCCccCccccC
Q psy12460 5 GTKTVMSNEVPEH---PVVSPISGSVFEKRLIEKYIKENG-TDPINAERLTLEQLIDIK 59 (171)
Q Consensus 5 s~~CaISge~~~~---PVvSp~SG~VFEr~lIekyI~~~G-~dPITgepLt~~DLIplk 59 (171)
-++|.|||+.|.+ |++-| +|+||-...|+.|=..+| .||+||+.+...+|+.++
T Consensus 330 ~Lvc~isge~md~~N~P~lfp-nG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l~kvy 387 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFP-NGYVYGTKALESLNEDDGIGDPRTKKVFRYSELCKVY 387 (389)
T ss_pred HHHhhccccccCCCCCccccc-CceeehhHHHHhhcccCCCcCCCCCccccHHHHHHHh
Confidence 4789999999987 99998 799999999999998887 499999999988888764
No 32
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.13 E-value=0.012 Score=36.25 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=31.5
Q ss_pred ccCCCCCCCCceecCCCCeeeehHHHHHHHHhcC--CCCC
Q psy12460 8 TVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENG--TDPI 45 (171)
Q Consensus 8 CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G--~dPI 45 (171)
|+|.++++.+|+.....||.|-+.-|.+|++.++ +||+
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~ 40 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPL 40 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCc
Confidence 8899999999994445899999999999999532 4764
No 33
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.96 E-value=0.03 Score=39.58 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=30.8
Q ss_pred cccCCCCCCC------------CceecCCCCeeeehHHHHHHHHhcCCCCC
Q psy12460 7 KTVMSNEVPE------------HPVVSPISGSVFEKRLIEKYIKENGTDPI 45 (171)
Q Consensus 7 ~CaISge~~~------------~PVvSp~SG~VFEr~lIekyI~~~G~dPI 45 (171)
.|+|..+++. -+++...+||.|-...|++|++.+.+||+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 71 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPL 71 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TT
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCC
Confidence 4888888883 34455468999999999999998889997
No 34
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=94.92 E-value=0.009 Score=52.38 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=44.2
Q ss_pred ccccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcC--CCCCCCC--CCCccCcc
Q psy12460 4 FGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENG--TDPINAE--RLTLEQLI 56 (171)
Q Consensus 4 ~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G--~dPITge--pLt~~DLI 56 (171)
.+..|+|+.+|-..|.+|.++.|.|||.+|.+|++-.- .||.-+. .+.+++++
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v 244 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYV 244 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchh
Confidence 46789999999999999999999999999999998543 4898774 45555555
No 35
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.89 E-value=0.037 Score=36.84 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=30.4
Q ss_pred ccccccCCCCCCCCceecCCCCee--eehHHHHHHHHhcCC--CCCCCCC
Q psy12460 4 FGTKTVMSNEVPEHPVVSPISGSV--FEKRLIEKYIKENGT--DPINAER 49 (171)
Q Consensus 4 ~s~~CaISge~~~~PVvSp~SG~V--FEr~lIekyI~~~G~--dPITgep 49 (171)
.|+.|+||+..++.||-+..+.|. ||......+-.+++. |||=++|
T Consensus 1 vsL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 1 VSLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp EESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred CeeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 478999999999999998777664 999887777777664 9986653
No 36
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.016 Score=51.12 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=45.5
Q ss_pred CcccccccCCCCCCCCceecCCCCeeeehHHHHH-HHHh-cCCCCCCCCCCCccCcc
Q psy12460 2 PIFGTKTVMSNEVPEHPVVSPISGSVFEKRLIEK-YIKE-NGTDPINAERLTLEQLI 56 (171)
Q Consensus 2 ~~~s~~CaISge~~~~PVvSp~SG~VFEr~lIek-yI~~-~G~dPITgepLt~~DLI 56 (171)
|+.++-|+|+.+.+..|++++ +||+|.-.+|.- |-.+ .+.||+-......++.|
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~vi 267 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVI 267 (271)
T ss_pred cccccceeeeecccCCccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhhh
Confidence 567899999999999999998 799999999999 8876 46699988766665543
No 37
>KOG0287|consensus
Probab=94.64 E-value=0.0088 Score=54.96 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=47.9
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIK 59 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk 59 (171)
.+.|.|+.+-++.||++| +||+|+--+|.+||..+-.||.---+.+..+|..+.
T Consensus 23 lLRC~IC~eyf~ip~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~ 76 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNR 76 (442)
T ss_pred HHHHhHHHHHhcCceecc-ccchHHHHHHHHHhccCCCCCceecccchhhhhhhh
Confidence 468999999999999999 899999999999999988899888778777776554
No 38
>KOG0978|consensus
Probab=94.43 E-value=0.017 Score=56.61 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=49.4
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHh-cCCCCCCCCCCCccCccccC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKE-NGTDPINAERLTLEQLIDIK 59 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~-~G~dPITgepLt~~DLIplk 59 (171)
.+.|+.+..-|+|-|++ +|||+|+..+|.+.+.. .-+||.=|.++...|+.+|+
T Consensus 643 ~LkCs~Cn~R~Kd~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred ceeCCCccCchhhHHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 46899999999999999 69999999999999986 45799999999999999986
No 39
>KOG3113|consensus
Probab=93.23 E-value=0.084 Score=46.86 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=44.3
Q ss_pred cccccCCCCCCCCc---eecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccCCC
Q psy12460 5 GTKTVMSNEVPEHP---VVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKVS 61 (171)
Q Consensus 5 s~~CaISge~~~~P---VvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk~~ 61 (171)
-|+|+|+|..|..- +....+||||+.+.+.+.= ...|++-|.+...+|.|.|+-+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlNg~ 168 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLNGT 168 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEeeCCC
Confidence 48999999998773 2223489999998876643 4569999999999999999865
No 40
>KOG0297|consensus
Probab=93.01 E-value=0.051 Score=49.39 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=49.1
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccc
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLID 57 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIp 57 (171)
.+.|+|...+..+|+-+..+||.|.+..|.+|+..+.+||+-..+++..++++
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 48999999999999997669999999999999999999999988898888887
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=93.00 E-value=0.046 Score=49.59 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=41.0
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERL 50 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepL 50 (171)
++.|-|+.+-...|+.++ +||+|+.-+|..||..+..||+-.++-
T Consensus 25 ~lrC~IC~~~i~ip~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 25 MLRCRICDCRISIPCETT-CGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred HHHhhhhhheeecceecc-cccchhHHHHHHHhcCCCCCccccccH
Confidence 578999999999999997 899999999999999999999987654
No 42
>KOG4628|consensus
Probab=92.88 E-value=0.1 Score=47.59 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=39.7
Q ss_pred ccccCCCCCCCC---ceecCCCCeeeehHHHHHHHHhcCC-CCCCCCCCCccCcccc
Q psy12460 6 TKTVMSNEVPEH---PVVSPISGSVFEKRLIEKYIKENGT-DPINAERLTLEQLIDI 58 (171)
Q Consensus 6 ~~CaISge~~~~---PVvSp~SG~VFEr~lIekyI~~~G~-dPITgepLt~~DLIpl 58 (171)
+.|+|+.+-.++ =.+.| ++|.|-+.+|-+||.++++ ||+=++..-.+.-.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~ 285 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEP 285 (348)
T ss_pred ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCC
Confidence 589999997655 45566 8999999999999999987 9997764444333333
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=92.61 E-value=0.037 Score=39.60 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=27.3
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCcccc
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDI 58 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIpl 58 (171)
.+.|+++...+++||+.-.+.|+|....|.+.+. ..||+=..|....|+.-+
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhh
Confidence 5789999999999998667999999999988664 249999999999998654
No 44
>KOG1645|consensus
Probab=91.88 E-value=0.48 Score=44.51 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=44.0
Q ss_pred ccccccCCCCCCCC----ceecCCCCeeeehHHHHHHHHhc--CCCCCCCCCCCccCccccCCC
Q psy12460 4 FGTKTVMSNEVPEH----PVVSPISGSVFEKRLIEKYIKEN--GTDPINAERLTLEQLIDIKVS 61 (171)
Q Consensus 4 ~s~~CaISge~~~~----PVvSp~SG~VFEr~lIekyI~~~--G~dPITgepLt~~DLIplk~~ 61 (171)
-.+.|+|.+.-.+. -++++.|||.|--..||+||-+. ..||.-..+.+..+|.+.+..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~al 66 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYAL 66 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHH
Confidence 35789998886544 56899999999999999999543 248986666777787777543
No 45
>KOG1002|consensus
Probab=90.73 E-value=0.091 Score=51.00 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=42.5
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcC-----CCCCCCCCCCcc
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENG-----TDPINAERLTLE 53 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G-----~dPITgepLt~~ 53 (171)
...|.|+.++-+++++| +|.|+|+|.+|.+|+...+ +||+-..+|++|
T Consensus 536 ~~~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ceeecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 45799999999999999 4899999999999997532 699999999988
No 46
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=90.72 E-value=1 Score=38.74 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhHHHHHHHHhhC
Q psy12460 117 CRVIARLTKEVTAAREALATLK 138 (171)
Q Consensus 117 ~RViarl~kErd~ar~~L~~l~ 138 (171)
...+.++.+||||||+.+.+|-
T Consensus 39 ~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 39 KDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999886
No 47
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=0.46 Score=44.48 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=40.4
Q ss_pred ccccCCCCCCCCc-------------eecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCcccc
Q psy12460 6 TKTVMSNEVPEHP-------------VVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDI 58 (171)
Q Consensus 6 ~~CaISge~~~~P-------------VvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIpl 58 (171)
-+|.|+.+-+-+| =--| +||+|--.++..|+++..+|||-+.|+-.|+=-+.
T Consensus 288 ~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~~~~~ 352 (491)
T COG5243 288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQSSPT 352 (491)
T ss_pred CeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccccccCCCC
Confidence 4799988874443 3455 89999999999999999999999998755554433
No 48
>KOG2177|consensus
Probab=89.25 E-value=0.11 Score=40.46 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=35.0
Q ss_pred ccccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCC
Q psy12460 4 FGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINA 47 (171)
Q Consensus 4 ~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITg 47 (171)
..+.|+|+.+.+++|++.| +||.|++..|..+....-.||.-.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcCcccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 4578999999999998886 899999999999887111366655
No 49
>KOG1813|consensus
Probab=88.82 E-value=0.17 Score=45.61 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=39.9
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERL 50 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepL 50 (171)
-|-|-|+.+.+.+||++ +|||.|...+-.+.++++.+|+|-+++.
T Consensus 241 Pf~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccchhh-cCCceeehhhhccccccCCcceeccccc
Confidence 46799999999999999 5899999999999999888899977654
No 50
>KOG2629|consensus
Probab=85.45 E-value=7.3 Score=35.17 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhC
Q psy12460 79 KMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLK 138 (171)
Q Consensus 79 ~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~ 138 (171)
...++--.++|-|.-++|+++.+.++||+++||.--.+ ..-+.+.+++.+..+..++
T Consensus 132 ~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~---~~~~s~~~~k~esei~~Ik 188 (300)
T KOG2629|consen 132 DKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNT---LVQLSRNIEKLESEINTIK 188 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHH
Confidence 34445556789999999999999999999999975554 2245555555555555554
No 51
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.82 E-value=0.58 Score=42.87 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=44.5
Q ss_pred cccccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcC-CCCCC-CCCCCccCcccc
Q psy12460 3 IFGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENG-TDPIN-AERLTLEQLIDI 58 (171)
Q Consensus 3 ~~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G-~dPIT-gepLt~~DLIpl 58 (171)
--++.|++++...++||-+|.+|+.|.+.+|+.-|-+.. +||.- ...+-+|.|.+-
T Consensus 272 ~i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD 329 (427)
T COG5222 272 NISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPD 329 (427)
T ss_pred CccccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCcc
Confidence 346899999999999999999999999999998887764 69973 334445555554
No 52
>KOG2660|consensus
Probab=84.82 E-value=0.22 Score=45.24 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=42.5
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCcc
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLE 53 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~ 53 (171)
-+.|.+++.-+.|+.....+=|+|+|++|.+|+.++..||.=+-.+-..
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4679999999999999888999999999999999988999877554433
No 53
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.43 E-value=15 Score=26.08 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhh
Q psy12460 76 AILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 137 (171)
Q Consensus 76 ~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l 137 (171)
+...+||+.||.+.=.+=.--..+..+++|=..++-+=.-|+.=+.+|..|.+.+++.|...
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999999988766655566666677666666666667777777777777777776654
No 54
>KOG2879|consensus
Probab=82.39 E-value=1.4 Score=39.63 Aligned_cols=46 Identities=22% Similarity=0.183 Sum_probs=38.6
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhc--CCCCCCCCCC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKEN--GTDPINAERL 50 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~--G~dPITgepL 50 (171)
+-.|+++|++|..|.+--++||+|+.-+|.+-..-. =+||--|++.
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 357999999999999988899999999999877633 3799888754
No 55
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.03 E-value=2.2 Score=38.51 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=41.8
Q ss_pred cccccCCCCC-CCCc----eecCCCCeeeehHHHHHHHHh-cCCCCCCCCCCCccCccccCC
Q psy12460 5 GTKTVMSNEV-PEHP----VVSPISGSVFEKRLIEKYIKE-NGTDPINAERLTLEQLIDIKV 60 (171)
Q Consensus 5 s~~CaISge~-~~~P----VvSp~SG~VFEr~lIekyI~~-~G~dPITgepLt~~DLIplk~ 60 (171)
...||++... ..+| +++ .|||.|++++|...+.. .+.||+=+.++..+++.+.-+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F 63 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLF 63 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccccc
Confidence 3569988873 2233 566 58999999999998765 357999999999988765554
No 56
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=78.82 E-value=1.3 Score=27.98 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=28.9
Q ss_pred ccCCCCCC---CCceecCCCCeeeehHHHHHHHHhcCCCCCCC
Q psy12460 8 TVMSNEVP---EHPVVSPISGSVFEKRLIEKYIKENGTDPINA 47 (171)
Q Consensus 8 CaISge~~---~~PVvSp~SG~VFEr~lIekyI~~~G~dPITg 47 (171)
|++..+.+ +.|+++ ..||+|-.+.|.+.......||+=+
T Consensus 2 C~~C~~~~~~~~~~~l~-~CgH~~C~~C~~~~~~~~~~CP~C~ 43 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLT-SCGHIFCEKCLKKLKGKSVKCPICR 43 (44)
T ss_pred CcCcCccccCCCCeEEc-ccCCHHHHHHHHhhcCCCCCCcCCC
Confidence 66666666 347777 4899999999999984445688743
No 57
>KOG0802|consensus
Probab=77.95 E-value=1.2 Score=41.87 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=42.8
Q ss_pred cccccCCCCCCCC-----ceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCcccc
Q psy12460 5 GTKTVMSNEVPEH-----PVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDI 58 (171)
Q Consensus 5 s~~CaISge~~~~-----PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIpl 58 (171)
.-.|+|+.+.+.. |-..| |||+|--.++.+|++...+||+=...+-.....-.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~~~~ 348 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDYVLWQI 348 (543)
T ss_pred CCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhccccccc
Confidence 5679999999988 67776 89999999999999999999997764444444333
No 58
>PHA02926 zinc finger-like protein; Provisional
Probab=77.61 E-value=1.9 Score=37.76 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=34.8
Q ss_pred cccccCCCCCCC---------CceecCCCCeeeehHHHHHHHHhc-C-----CCCCCCCCCC
Q psy12460 5 GTKTVMSNEVPE---------HPVVSPISGSVFEKRLIEKYIKEN-G-----TDPINAERLT 51 (171)
Q Consensus 5 s~~CaISge~~~---------~PVvSp~SG~VFEr~lIekyI~~~-G-----~dPITgepLt 51 (171)
+..|+|+.+..- .++.+ .+||+|..++|.+|-+.. + .||+=+..++
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~-~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLD-SCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccC-CCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 467999998742 25565 589999999999999852 2 3999877654
No 59
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=72.81 E-value=3.6 Score=30.77 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=33.5
Q ss_pred ccCCCCCCCC-ceecCCCCeeeehHHHHHHHHh---cCCCCCCCCCCCc
Q psy12460 8 TVMSNEVPEH-PVVSPISGSVFEKRLIEKYIKE---NGTDPINAERLTL 52 (171)
Q Consensus 8 CaISge~~~~-PVvSp~SG~VFEr~lIekyI~~---~G~dPITgepLt~ 52 (171)
|+....|-.+ |++.-++||.|-...|.+||+. ++.||+=+++...
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 5544444444 7776679999999999999985 4679998776543
No 60
>PRK00846 hypothetical protein; Provisional
Probab=71.57 E-value=34 Score=25.03 Aligned_cols=48 Identities=25% Similarity=0.180 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCCCCCCCCCCc
Q psy12460 102 ARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQP 152 (171)
Q Consensus 102 ~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~~~~~~~~~~ 152 (171)
+-.+|..+++++ -++|.+|.+.-...++.|..+..+...+++...|+|
T Consensus 28 tIe~LN~~v~~q---q~~I~~L~~ql~~L~~rL~~~~~s~~~~~~dE~PPP 75 (77)
T PRK00846 28 ALTELSEALADA---RLTGARNAELIRHLLEDLGKVRSTLFADPADEPPPP 75 (77)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCcC
Confidence 566777777774 467777777777788888888877766666655554
No 61
>PRK02119 hypothetical protein; Provisional
Probab=69.45 E-value=25 Score=25.11 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCCCCCCCCCC
Q psy12460 100 QTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQ 151 (171)
Q Consensus 100 ~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~~~~~~~~~ 151 (171)
+.+-.+|+.++|++. +.|.+|.++-..+++.|..+..+.+..++...|+
T Consensus 22 E~tie~LN~~v~~Qq---~~id~L~~ql~~L~~rl~~~~~~~~~~~~~e~~P 70 (73)
T PRK02119 22 ENLLEELNQALIEQQ---FVIDKMQVQLRYMANKLKDMQPSNIASQAEETPP 70 (73)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCc
Confidence 446678888888876 4566666666666777777765543333333333
No 62
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.16 E-value=26 Score=24.93 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCCCCCCCCCC
Q psy12460 99 LQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQ 151 (171)
Q Consensus 99 l~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~~~~~~~~~ 151 (171)
.+.+-.+|+.++|++.. .|.+|.++-..+++.|..+..+....++...|+
T Consensus 20 Qe~tIe~Ln~~v~~Qq~---~I~~L~~~l~~L~~rl~~~~~~~~~~~~~e~~P 69 (72)
T PRK02793 20 QEITIEELNVTVTAHEM---EMAKLRDHLRLLTEKLKASQPSNIASQAEETPP 69 (72)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCc
Confidence 34477889999998864 556666666667777777776543333333333
No 63
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=67.74 E-value=40 Score=23.66 Aligned_cols=54 Identities=28% Similarity=0.254 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHh
Q psy12460 83 DEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALAT 136 (171)
Q Consensus 83 nEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~ 136 (171)
.-.+...-+.-.+|+++...|+||-..+.....=..-|..+++|..+++.++..
T Consensus 52 ~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~ 105 (125)
T PF13801_consen 52 ALMDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQ 105 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333444446667899999999999999987654333455555555555555543
No 64
>PRK11546 zraP zinc resistance protein; Provisional
Probab=67.45 E-value=31 Score=28.02 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=42.6
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHhhhhHHHHHHHHhhC
Q psy12460 79 KMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAAC-RVIARLTKEVTAAREALATLK 138 (171)
Q Consensus 79 ~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~-RViarl~kErd~ar~~L~~l~ 138 (171)
..+|.--|...-++..||++|-.-|.||- ||+..++.- ..|..|.+|--++|..|.+..
T Consensus 50 a~~q~I~~~f~~~t~~LRqqL~aKr~ELn-ALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQLVSKRYEYN-ALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667789999999999999995 555555444 557778888777777777553
No 65
>KOG4159|consensus
Probab=66.69 E-value=3 Score=38.66 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=35.4
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPI 45 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPI 45 (171)
.|-|.++....-.||++| +||.|....|.+=+.++..||.
T Consensus 84 ef~c~vc~~~l~~pv~tp-cghs~c~~Cl~r~ld~~~~cp~ 123 (398)
T KOG4159|consen 84 EFECCVCSRALYPPVVTP-CGHSFCLECLDRSLDQETECPL 123 (398)
T ss_pred hhhhhhhHhhcCCCcccc-ccccccHHHHHHHhccCCCCcc
Confidence 578999999999999997 7999999999997776667887
No 66
>KOG0311|consensus
Probab=66.42 E-value=0.47 Score=43.76 Aligned_cols=48 Identities=10% Similarity=0.040 Sum_probs=42.2
Q ss_pred ccccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcC-CCCCCCCCCC
Q psy12460 4 FGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENG-TDPINAERLT 51 (171)
Q Consensus 4 ~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G-~dPITgepLt 51 (171)
-.+.|+|++...+.-+.++.|+|-|.+.+|.+-++..| .||-..+.|.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 46899999999999999999999999999999999876 4998776553
No 67
>PF14449 PT-TG: Pre-toxin TG
Probab=66.18 E-value=2.7 Score=30.28 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=13.0
Q ss_pred cCCCCCCCCCCCccC
Q psy12460 40 NGTDPINAERLTLEQ 54 (171)
Q Consensus 40 ~G~dPITgepLt~~D 54 (171)
.|.||+||+.|+..|
T Consensus 26 ~G~D~~TGekls~~d 40 (79)
T PF14449_consen 26 TGKDPITGEKLSMWD 40 (79)
T ss_pred cccCCCCcCCccHHH
Confidence 689999999997765
No 68
>PRK11020 hypothetical protein; Provisional
Probab=65.87 E-value=19 Score=28.56 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcc
Q psy12460 91 HSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQ 140 (171)
Q Consensus 91 E~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~ 140 (171)
|.-.|-..|+.+|..|..|.-+.|+. +|+.+.+|.+.+...++.++..
T Consensus 6 Eiq~L~drLD~~~~Klaaa~~rgd~~--~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 6 EIKRLSDRLDAIRHKLAAASLRGDAE--KYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788999999999999999986 6899999999999999888654
No 69
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=65.66 E-value=3.3 Score=34.91 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=21.0
Q ss_pred ccccccCCCCCCC---CceecCCCCeeeeh
Q psy12460 4 FGTKTVMSNEVPE---HPVVSPISGSVFEK 30 (171)
Q Consensus 4 ~s~~CaISge~~~---~PVvSp~SG~VFEr 30 (171)
|.|.||++++++. ...+++ +||.||+
T Consensus 1 ~~~~CP~C~~~l~~~~~~~~C~-~~h~fd~ 29 (272)
T PRK11088 1 MSYQCPLCHQPLTLEENSWICP-QNHQFDC 29 (272)
T ss_pred CcccCCCCCcchhcCCCEEEcC-CCCCCcc
Confidence 4689999999984 467776 5999986
No 70
>KOG0883|consensus
Probab=62.73 E-value=4.1 Score=38.58 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=44.3
Q ss_pred cccccCCCCCCCC---ceecCCCCeeeehHHHHHHHH--hcCCCCCCCCCCCccCccccCC
Q psy12460 5 GTKTVMSNEVPEH---PVVSPISGSVFEKRLIEKYIK--ENGTDPINAERLTLEQLIDIKV 60 (171)
Q Consensus 5 s~~CaISge~~~~---PVvSp~SG~VFEr~lIekyI~--~~G~dPITgepLt~~DLIplk~ 60 (171)
.++||..+.++.+ =|.-..+|.||....|++.=- +|=+|=+|.+|.+-+|+|.|..
T Consensus 101 eyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQd 161 (518)
T KOG0883|consen 101 EYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQD 161 (518)
T ss_pred cccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeecC
Confidence 5889999988765 233334799999999998643 2447999999999999999965
No 71
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.76 E-value=20 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=14.2
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHH
Q psy12460 79 KMLQDEWDAIMLHSFTQRQQLQTARQ 104 (171)
Q Consensus 79 ~~lQnEWDa~mLE~f~LRkql~~~rq 104 (171)
..|.+++|++.-|+=.||.++..++.
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666555555555554443
No 72
>KOG1001|consensus
Probab=61.76 E-value=2.6 Score=41.40 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=56.0
Q ss_pred ccccCCCCCCCCceecCCCCeeeehHHHHHHHHhc--CCCCCCCCCCCccCccccCCCCC-CCCCCCCCCChhHHHHHhH
Q psy12460 6 TKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKEN--GTDPINAERLTLEQLIDIKVSPV-TKPKPPQATSIPAILKMLQ 82 (171)
Q Consensus 6 ~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~--G~dPITgepLt~~DLIplk~~~~-~~pr~~~~tSIP~lL~~lQ 82 (171)
+.|.|..+ .+.+++++ +||.|.+.++.++|... +.||+-...+..++|+.-..... ...--+..+=|+.+|..||
T Consensus 455 ~~c~ic~~-~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~ 532 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKILQ 532 (674)
T ss_pred cccccccc-cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHHh
Confidence 68999999 99999997 79999999999999853 45888888888888887654332 1111114456777777777
No 73
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=61.50 E-value=4.6 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=20.0
Q ss_pred cccCCCCC----CCCceecCCCCeeeehH
Q psy12460 7 KTVMSNEV----PEHPVVSPISGSVFEKR 31 (171)
Q Consensus 7 ~CaISge~----~~~PVvSp~SG~VFEr~ 31 (171)
.|+=+|.- -++|+|||++|.+|...
T Consensus 11 ~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 11 TCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 56666663 46899999999999986
No 74
>PRK04406 hypothetical protein; Provisional
Probab=60.28 E-value=46 Score=23.94 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCCCCCCCCCC
Q psy12460 100 QTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQ 151 (171)
Q Consensus 100 ~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~~~~~~~~~ 151 (171)
+.+-.+|+.++|++. +.|.+|.++-..+++.|..+..+.+..++...|+
T Consensus 24 E~tIe~LN~~v~~Qq---~~I~~L~~ql~~L~~rl~~~~~~~~~~~~~e~pP 72 (75)
T PRK04406 24 EQTIEELNDALSQQQ---LLITKMQDQMKYVVGKVKNMDSSNLADPAEETPP 72 (75)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCc
Confidence 346677888888775 4556666666666666766664433333333333
No 75
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.75 E-value=43 Score=28.27 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=36.1
Q ss_pred hHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcc
Q psy12460 75 PAILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQ 140 (171)
Q Consensus 75 P~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~ 140 (171)
=..|..+|+|-+.+=-+.=+++++.++...|+...+=+ +.-.|..|-+|.++++++|+.++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ---SDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666555555666666666666555443 2233555666666666666665544
No 76
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.73 E-value=35 Score=32.67 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=42.1
Q ss_pred CChhHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHhhhhHHHHHHHHhh
Q psy12460 72 TSIPAILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAAC-RVIARLTKEVTAAREALATL 137 (171)
Q Consensus 72 tSIP~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~-RViarl~kErd~ar~~L~~l 137 (171)
-.+=+-++.+..|-+.+.-||=.|+++.+.+|+....-=+|-+-|. .+-.++.+|+++++++++++
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL 128 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888888888888776655555555544 22344555555544444433
No 77
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=59.44 E-value=10 Score=24.93 Aligned_cols=38 Identities=29% Similarity=0.529 Sum_probs=27.5
Q ss_pred ccCCCC--CCCCceecCC--CC--eeeehHHHHHHHHhcC--CCCC
Q psy12460 8 TVMSNE--VPEHPVVSPI--SG--SVFEKRLIEKYIKENG--TDPI 45 (171)
Q Consensus 8 CaISge--~~~~PVvSp~--SG--~VFEr~lIekyI~~~G--~dPI 45 (171)
|.|... ...+|.++|- .| +.|-+..+.+||.+.+ +||+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~i 47 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEI 47 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCC
Confidence 555553 6777888872 13 5789999999998876 4776
No 78
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=59.09 E-value=9.3 Score=37.52 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12460 79 KMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDA 115 (171)
Q Consensus 79 ~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DA 115 (171)
..+|+-||+.=-|.-++=+|...+||||+|-||+||.
T Consensus 141 di~~shad~gE~~l~~~L~~~~~~k~e~a~~l~~~n~ 177 (758)
T COG5324 141 DIFQSHADKGESELKELLKQTGRTKQELAHELIENNC 177 (758)
T ss_pred chhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHhcCC
Confidence 5789999999888777777777789999999999985
No 79
>PRK00736 hypothetical protein; Provisional
Probab=58.07 E-value=55 Score=22.97 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCccc
Q psy12460 100 QTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQA 141 (171)
Q Consensus 100 ~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~ 141 (171)
+.+-.+|+.++|++. +.|.+|.++-..+++.|.....+.
T Consensus 18 e~tie~Ln~~v~~Qq---~~i~~L~~ql~~L~~rl~~~~~~~ 56 (68)
T PRK00736 18 EKTIEELSDQLAEQW---KTVEQMRKKLDALTERFLSLEEQA 56 (68)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccc
Confidence 447788999999886 456666666666666777766543
No 80
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=57.90 E-value=5.3 Score=32.06 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.0
Q ss_pred cccCCCCCC----CCceecCCCCeeeehH
Q psy12460 7 KTVMSNEVP----EHPVVSPISGSVFEKR 31 (171)
Q Consensus 7 ~CaISge~~----~~PVvSp~SG~VFEr~ 31 (171)
.|+=+|.-| ++|++||++|.+|...
T Consensus 11 ~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 11 ICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cCCCcCccccccCCCCccCCCcCCccCcc
Confidence 577777754 7899999999999887
No 81
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=57.39 E-value=93 Score=24.44 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=36.0
Q ss_pred ChhHHHHHhHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12460 73 SIPAILKMLQDEWDAI-------MLHSFTQRQQLQTARQELSHALYQHDAACRVIARL 123 (171)
Q Consensus 73 SIP~lL~~lQnEWDa~-------mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl 123 (171)
++||.|..||.||-.. -+|-=+|+.....+.-|.-..=+-+..-+|=|--|
T Consensus 1 TLpGVl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkML 58 (134)
T PF08232_consen 1 TLPGVLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKML 58 (134)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999754 56777777777777777765555554445555444
No 82
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=55.00 E-value=74 Score=30.10 Aligned_cols=40 Identities=28% Similarity=0.367 Sum_probs=35.9
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12460 78 LKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAAC 117 (171)
Q Consensus 78 L~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~ 117 (171)
|..-++.+...+-|....+++|..+|+|+..++=..|+|-
T Consensus 118 le~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~ 157 (522)
T PF05701_consen 118 LESAREQYASAVAELDSVKQELEKLRQELASALDAKNAAL 157 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999988887775
No 83
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=54.77 E-value=4.2 Score=35.45 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=34.9
Q ss_pred cccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCC
Q psy12460 5 GTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAER 49 (171)
Q Consensus 5 s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgep 49 (171)
-|.|.|+-+-.+.||++. +||-|.-.+..+-.++..+|=+-|..
T Consensus 196 PF~C~iCKkdy~spvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESPVVTE-CGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccchhhhh-cchhHHHHHHHHHhccCCcceecchh
Confidence 489999999999999995 89999988766555555567766653
No 84
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=54.64 E-value=46 Score=25.99 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=38.2
Q ss_pred CCChhHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHH
Q psy12460 71 ATSIPAILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALA 135 (171)
Q Consensus 71 ~tSIP~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~ 135 (171)
+.+=.+++..||.+-..+=- ++..++.+++..--++|.|..=|.+++++.|+++....
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~-------E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~ 68 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEG-------ELASLQEELARLEAERDELREEIVKLMEENEELRALKK 68 (120)
T ss_pred CCchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777776554433 44455556666666788888888888888887755433
No 85
>PRK00295 hypothetical protein; Provisional
Probab=54.20 E-value=65 Score=22.61 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCC
Q psy12460 100 QTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGI 143 (171)
Q Consensus 100 ~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~ 143 (171)
+.+-.+|+.++|++. +.|.+|.++-..+++.|..+..+++.
T Consensus 18 E~tie~Ln~~v~~Qq---~~I~~L~~ql~~L~~rl~~~~~~~~~ 58 (68)
T PRK00295 18 DDTIQALNDVLVEQQ---RVIERLQLQMAALIKRQEEMVGQFGS 58 (68)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 346688888888886 45566666666666667776643333
No 86
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.11 E-value=71 Score=26.99 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=44.9
Q ss_pred CCCCCCCCChhHH----------HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHH
Q psy12460 65 KPKPPQATSIPAI----------LKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREAL 134 (171)
Q Consensus 65 ~pr~~~~tSIP~l----------L~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L 134 (171)
...|+...=+|.+ |..++++||... -++.+.+++..++.+.--=+++....=++.+-+|.|.++..+
T Consensus 86 s~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~---~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 86 STTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRT---AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665 666777888444 344555555555544444455555666666777777777777
Q ss_pred HhhCcc
Q psy12460 135 ATLKPQ 140 (171)
Q Consensus 135 ~~l~~~ 140 (171)
..++..
T Consensus 163 ~~~~~~ 168 (206)
T PRK10884 163 DDKQRT 168 (206)
T ss_pred HHHHHH
Confidence 776644
No 87
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=54.02 E-value=12 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=16.0
Q ss_pred HHHHHhcCCCCCCCCCCCccC
Q psy12460 34 EKYIKENGTDPINAERLTLEQ 54 (171)
Q Consensus 34 ekyI~~~G~dPITgepLt~~D 54 (171)
++|.+.-..+|+||.++....
T Consensus 4 ~~f~~np~~NP~Tgr~Ik~~g 24 (37)
T PF08793_consen 4 EEFHRNPTVNPITGRKIKPGG 24 (37)
T ss_pred HHHHhCCCCCCCCCCcCCCCC
Confidence 457766668999999987653
No 88
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.10 E-value=8.4 Score=30.69 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=22.1
Q ss_pred cccCCCCC----CCCceecCCCCeeeehHHHHH
Q psy12460 7 KTVMSNEV----PEHPVVSPISGSVFEKRLIEK 35 (171)
Q Consensus 7 ~CaISge~----~~~PVvSp~SG~VFEr~lIek 35 (171)
+|+=+|.- -++|+|||++|..|-|+..+.
T Consensus 11 idPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 11 IDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred cCccccchhhccCCCccccCcccccchHHHHHh
Confidence 46666654 478999999999998765554
No 89
>KOG2817|consensus
Probab=49.74 E-value=16 Score=34.14 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=36.7
Q ss_pred cccccCCCCCCCC---ceecCCCCeeeehHHHHHHHHhcC---CCCCCCCCCCccCcccc
Q psy12460 5 GTKTVMSNEVPEH---PVVSPISGSVFEKRLIEKYIKENG---TDPINAERLTLEQLIDI 58 (171)
Q Consensus 5 s~~CaISge~~~~---PVvSp~SG~VFEr~lIekyI~~~G---~dPITgepLt~~DLIpl 58 (171)
.|.|||+.+...+ |+-- .||||-.|..|-+-.+.+. +||-=-..-..+|-+.+
T Consensus 334 vF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql 392 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQL 392 (394)
T ss_pred eeecccchhhccCCCCCeee-eccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccc
Confidence 5899999997655 6665 5899999999999876443 47664444444444443
No 90
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=49.58 E-value=35 Score=26.06 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=44.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccC
Q psy12460 83 DEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAG 142 (171)
Q Consensus 83 nEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~ 142 (171)
++||..++++. ..+..+..++..+--..+.-.+.+..+-..-+++...|..+...+.
T Consensus 46 ~~wDr~Lv~n~---~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~ 102 (116)
T PF05064_consen 46 NAWDRQLVENG---EKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVE 102 (116)
T ss_dssp ---TCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT-
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999994 5566666777778888888889999999999999999988876654
No 91
>KOG0827|consensus
Probab=49.29 E-value=12 Score=35.33 Aligned_cols=46 Identities=17% Similarity=0.378 Sum_probs=29.2
Q ss_pred CCcccccccC--CCCCCCCceecC-CCCeeeehHHHHHHHHhc---CCCCCCC
Q psy12460 1 MPIFGTKTVM--SNEVPEHPVVSP-ISGSVFEKRLIEKYIKEN---GTDPINA 47 (171)
Q Consensus 1 ~~~~s~~CaI--Sge~~~~PVvSp-~SG~VFEr~lIekyI~~~---G~dPITg 47 (171)
||+|+. |.| -|.+-.+-+-+. .+||||.-.++..|.+.- -+|||-.
T Consensus 1 mpi~A~-C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 1 MPIMAE-CHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred CCccce-eeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 678775 444 444444333222 279999999999999842 2466655
No 92
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.06 E-value=43 Score=25.65 Aligned_cols=49 Identities=29% Similarity=0.282 Sum_probs=24.4
Q ss_pred HHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCc
Q psy12460 77 ILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKP 139 (171)
Q Consensus 77 lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~ 139 (171)
.|..|...-..+.-|.-.||+++.++-.|- ++|-.|.+.+|+.|..+..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN--------------~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEEN--------------ARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444444444444443 3455566666666665543
No 93
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=48.43 E-value=22 Score=34.57 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=39.4
Q ss_pred HHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCCCCCCCCCCchhhhhhh
Q psy12460 108 HALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQPSRLWGKF 159 (171)
Q Consensus 108 ~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 159 (171)
.++.|+|+|-.+++.+++|--.+-.-|..|+.-.....++....|...+.+|
T Consensus 331 Ea~~~Rd~A~~aA~eALqEASAaE~lir~Ls~fseL~ssak~~~P~~~v~~F 382 (579)
T PF06075_consen 331 EAMQQRDAAQKAAVEALQEASAAESLIRCLSMFSELCSSAKEDNPQPTVEQF 382 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHH
Confidence 4788999999999999999988888777776544444455555566666666
No 94
>PF02865 STAT_int: STAT protein, protein interaction domain; InterPro: IPR013799 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the N-terminal domain, which is responsible for protein interactions. This domain has a multi-helical structure that can be subdivided into two structural sub-domains.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction; PDB: 1BGF_A 1YVL_A.
Probab=48.04 E-value=96 Score=24.16 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=40.5
Q ss_pred hhHHHHHhHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhhhhhhHH--HHHHHHhhhh
Q psy12460 74 IPAILKMLQDEWDAIML-HSFTQRQQLQTARQELSHALYQHDAAC--RVIARLTKEV 127 (171)
Q Consensus 74 IP~lL~~lQnEWDa~mL-E~f~LRkql~~~rqeLS~aLYq~DAA~--RViarl~kEr 127 (171)
+=++|..||+.++...- ++|-+|=.|.+..+.+ +..|+++... |+|...+++-
T Consensus 60 ~~~ll~~Lq~~~~~~~~~~~fl~~~~l~~~~~~~-q~~y~~~P~~L~~~I~~~L~~E 115 (124)
T PF02865_consen 60 FQNLLQELQQQASRQSQEDNFLLQHNLREIAQNF-QNRYQQNPLELARIIRNCLQEE 115 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH-HHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-HHHhccCHHHHHHHHHHHHHHH
Confidence 44688999999999887 6888888899988877 6789998875 7777766554
No 95
>KOG0824|consensus
Probab=47.21 E-value=11 Score=34.44 Aligned_cols=50 Identities=12% Similarity=-0.032 Sum_probs=40.3
Q ss_pred ccccccCCCCCCCCceecCCCCeeeehHHHHHHHHh-cCCCCCCCCCCCccC
Q psy12460 4 FGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKE-NGTDPINAERLTLEQ 54 (171)
Q Consensus 4 ~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~-~G~dPITgepLt~~D 54 (171)
+.--|+|+...+..||.- .+||.|..-.|+--... .++||+-..|++.+-
T Consensus 6 ~~~eC~IC~nt~n~Pv~l-~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNL-YCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cCCcceeeeccCCcCccc-cccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 344699999999999654 68999999999987764 456999998887663
No 96
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.04 E-value=55 Score=21.47 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=21.3
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy12460 79 KMLQDEWDAIMLHSFTQRQQLQTARQELS 107 (171)
Q Consensus 79 ~~lQnEWDa~mLE~f~LRkql~~~rqeLS 107 (171)
..|...+|++.-|+=.|.++.+.++.|+.
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888877777776653
No 97
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=45.27 E-value=1.5e+02 Score=24.50 Aligned_cols=29 Identities=31% Similarity=0.573 Sum_probs=16.4
Q ss_pred CCCCeeeehHHHHHHHH----hcCCCCC---CCCCCCc
Q psy12460 22 PISGSVFEKRLIEKYIK----ENGTDPI---NAERLTL 52 (171)
Q Consensus 22 p~SG~VFEr~lIekyI~----~~G~dPI---TgepLt~ 52 (171)
|.|| |--..+..||. .||+-|= +...++-
T Consensus 5 p~sG--FrH~~Vv~FINee~~~n~~GpeFYl~~~S~sW 40 (152)
T PF15186_consen 5 PSSG--FRHGEVVAFINEEMLRNGGGPEFYLENRSLSW 40 (152)
T ss_pred CCCC--ccccHHHHHHHHHHHhcCCCchHHHHhccCCH
Confidence 3456 55666667775 4676663 4444443
No 98
>KOG4467|consensus
Probab=44.17 E-value=29 Score=32.94 Aligned_cols=45 Identities=36% Similarity=0.659 Sum_probs=28.9
Q ss_pred HHHhHHHHHHHH-----HhhhHHHHHHHHH---------HHHHHHHhhhh-hhHHHHHHH
Q psy12460 78 LKMLQDEWDAIM-----LHSFTQRQQLQTA---------RQELSHALYQH-DAACRVIAR 122 (171)
Q Consensus 78 L~~lQnEWDa~m-----LE~f~LRkql~~~---------rqeLS~aLYq~-DAA~RViar 122 (171)
|..+-.||.-+- -|+|+|-+.+..+ .-..|++||.| |-||||||.
T Consensus 437 Lkkll~ewkE~svkL~p~~~ltlN~tmkslr~kneEaltegg~~~slyk~adk~Ck~i~G 496 (557)
T KOG4467|consen 437 LKKLLGEWKELSVKLLPAETLTLNVTMKSLRHKNEEALTEGGVSQSLYKHADKACKVIAG 496 (557)
T ss_pred HHHHHHHHHhcccccCchhhhHHhhhHHHHHHHHHHHHHhcccchhHHHHHHHHHHhhcC
Confidence 445556887653 2556544444433 34568889976 899999974
No 99
>KOG3113|consensus
Probab=44.13 E-value=22 Score=31.93 Aligned_cols=57 Identities=16% Similarity=0.367 Sum_probs=41.1
Q ss_pred ccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCC-CCCCccCccccCCCC
Q psy12460 6 TKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINA-ERLTLEQLIDIKVSP 62 (171)
Q Consensus 6 ~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITg-epLt~~DLIplk~~~ 62 (171)
..|+||.+|...|+|.=-=|..|.|..|..+|-+...=|-+- ..=++.|.+.|+-++
T Consensus 35 ~~CaLtqepL~~Piv~c~lGrLYNKe~vi~~LL~Ks~~pksaShIKslKDvveLklt~ 92 (293)
T KOG3113|consen 35 RNCALTQEPLRRPIVACGLGRLYNKESVIEFLLDKSSLPKSASHIKSLKDVVELKLTL 92 (293)
T ss_pred hhcccccCccccceeeehhhccccHHHHHHHHHhcccCCcchhhhcchhhHhheeccc
Confidence 479999999999999766789999999999987654223222 123456777776544
No 100
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=43.19 E-value=13 Score=28.09 Aligned_cols=36 Identities=22% Similarity=0.485 Sum_probs=29.1
Q ss_pred ceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCcc
Q psy12460 18 PVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLE 53 (171)
Q Consensus 18 PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~ 53 (171)
||+==++.|.|---.|.+||...|.||..+++.-..
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred eEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 454445789999999999999999999998875443
No 101
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=43.02 E-value=1.2e+02 Score=21.85 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=26.7
Q ss_pred CCCCCCCCCCChhHHHHHhHHHHHHHHHhhhHHHHHH
Q psy12460 63 VTKPKPPQATSIPAILKMLQDEWDAIMLHSFTQRQQL 99 (171)
Q Consensus 63 ~~~pr~~~~tSIP~lL~~lQnEWDa~mLE~f~LRkql 99 (171)
..+|..+....+-.+|..||+|.+-+=+|..+|...+
T Consensus 4 t~r~s~~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~ 40 (79)
T PF06657_consen 4 TSRPSQSPGEALSEVLKALQDEFGHMKMEHQELQDEY 40 (79)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666678889999999999887766665553333
No 102
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=41.64 E-value=1.1e+02 Score=26.69 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=9.1
Q ss_pred HhhhhHHHHHHHHh
Q psy12460 123 LTKEVTAAREALAT 136 (171)
Q Consensus 123 l~kErd~ar~~L~~ 136 (171)
+.+|.+++|+.|.-
T Consensus 96 l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 96 LKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHhcC
Confidence 66777777775543
No 103
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=40.88 E-value=1.1e+02 Score=25.58 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=30.8
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q psy12460 78 LKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHD 114 (171)
Q Consensus 78 L~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~D 114 (171)
+.+|++-=|++|.|-+++..+..+.|+++...+..-.
T Consensus 26 ~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~ 62 (201)
T PRK02195 26 LPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIE 62 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999966544333
No 104
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=40.39 E-value=1.8e+02 Score=26.65 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcc
Q psy12460 81 LQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQ 140 (171)
Q Consensus 81 lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~ 140 (171)
..+||+.+.-|-=+|...-..-++.|..----.|..+..|.+-.|+-.++.+.|.+++.+
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 468999999888777777766777666666666777777777666666666666666544
No 105
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=40.21 E-value=61 Score=22.59 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhC
Q psy12460 99 LQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLK 138 (171)
Q Consensus 99 l~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~ 138 (171)
.+.+-.+|+..+|++. +.|.+|-++-..+++.|..+.
T Consensus 16 qe~~ie~Ln~~v~~Qq---~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQ---RQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 3446678888888775 566666666666777777776
No 106
>KOG0774|consensus
Probab=39.25 E-value=13 Score=33.67 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCCCCCCCCCCchhhhhhhccccceeeeeeC
Q psy12460 92 SFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQPSRLWGKFCHSSVVVKVLTC 171 (171)
Q Consensus 92 ~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (171)
.+.-|++|.+.|+++-.-|-.+|-||+-..--... -|.+-...-.+....-.-.-.-+-|||-|+...+|--||
T Consensus 102 hsdYR~kL~qiR~iy~~ElekyeqaCneftthV~n------lL~eQsr~RPi~~ke~e~m~~~i~~kF~~iq~~lkqstc 175 (334)
T KOG0774|consen 102 HSDYRAKLLQIRQIYHNELEKYEQACNEFTTHVMN------LLREQSRTRPIMPKEIERMVQIISKKFSHIQMQLKQSTC 175 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56679999999999999999999999755432211 111111111111111112223456888888877775554
No 107
>PRK04325 hypothetical protein; Provisional
Probab=38.88 E-value=1.4e+02 Score=21.20 Aligned_cols=39 Identities=10% Similarity=0.214 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCccc
Q psy12460 100 QTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQA 141 (171)
Q Consensus 100 ~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~ 141 (171)
+.+-.+|+.++|++. +.|.+|.++-..+.+.|..+..+.
T Consensus 22 E~tIe~LN~vv~~Qq---~~I~~L~~ql~~L~~rl~~~~~~~ 60 (74)
T PRK04325 22 EDLIDGLNATVARQQ---QTLDLLQAQLRLLYQQMRDANPDA 60 (74)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccc
Confidence 447789999999886 456666666666666777776544
No 108
>PHA02047 phage lambda Rz1-like protein
Probab=38.79 E-value=1.7e+02 Score=22.74 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=48.4
Q ss_pred HhHHHHHH--HH-HhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCCCCCCCCCCchhhh
Q psy12460 80 MLQDEWDA--IM-LHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQPSRLW 156 (171)
Q Consensus 80 ~lQnEWDa--~m-LE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~~~~~~~~~~~~~~ 156 (171)
.|+--|.. .. -|--.|..||+..+..+.+-.-+-| .|-+|..+.++|.+.+|.+-+.=.+ .|-|....
T Consensus 21 ~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~---~l~~kae~~t~Ei~~aL~~n~~WaD------~PVPpaV~ 91 (101)
T PHA02047 21 GFVQSYRALGIAHEEAKRQTARLEALEVRYATLQRHVQ---AVEARTNTQRQEVDRALDQNRPWAD------RPVPPAVV 91 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCCccc------CCCChHHH
Confidence 44554554 22 2334678888888888776544444 4678899999999999998774333 45555666
Q ss_pred hhhcc
Q psy12460 157 GKFCH 161 (171)
Q Consensus 157 ~~~~~ 161 (171)
.-||.
T Consensus 92 ~~Lck 96 (101)
T PHA02047 92 DSLCK 96 (101)
T ss_pred HHHHH
Confidence 66774
No 109
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=37.95 E-value=92 Score=24.98 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=33.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcc
Q psy12460 86 DAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQ 140 (171)
Q Consensus 86 Da~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~ 140 (171)
....-|.-+||+++.++++|++.-==|.+=|+ -||+-|+-|++.++|++++.+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAk--waKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAK--WAKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45566778889999999999887555555555 244555555555555555443
No 110
>KOG4196|consensus
Probab=37.95 E-value=1.1e+02 Score=24.83 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=27.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCccc
Q psy12460 89 MLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQA 141 (171)
Q Consensus 89 mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~ 141 (171)
=-|.-.|++|++++++|+ +++-+|+|..+.-...+..++
T Consensus 80 E~~k~~L~qqv~~L~~e~--------------s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEEN--------------SRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhh
Confidence 334455666666666665 567788898888888887765
No 111
>PF11656 DUF3811: YjbD family (DUF3811); InterPro: IPR020317 This entry contains proteins with no known function.
Probab=37.95 E-value=69 Score=24.22 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=36.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhhhHH---HHHHHHhhhhHHHHHHHHh
Q psy12460 90 LHSFTQRQQLQTARQELSHALYQHDAAC---RVIARLTKEVTAAREALAT 136 (171)
Q Consensus 90 LE~f~LRkql~~~rqeLS~aLYq~DAA~---RViarl~kErd~ar~~L~~ 136 (171)
-|..+++..|++.|..+.+.|-.-+.-. -+|.+++.||..+-++...
T Consensus 12 seq~evkt~L~~aRk~~gR~LTNaE~NkiKde~i~ki~~ere~~aKkar~ 61 (87)
T PF11656_consen 12 SEQREVKTLLDQARKNLGRELTNAEQNKIKDEIIDKIMAEREKAAKKARA 61 (87)
T ss_pred HHHHHHHHHHHHHHHHcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999998887655433 6899999999866554443
No 112
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.93 E-value=1.9e+02 Score=22.36 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhC
Q psy12460 76 AILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLK 138 (171)
Q Consensus 76 ~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~ 138 (171)
.-+..+.++=+.+....=.|+.++++..++++.+--..=++..-+..+..--...++++..++
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777888888888888886666666665555555444444444454444
No 113
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.40 E-value=2.3e+02 Score=25.91 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=54.2
Q ss_pred CChhHHHHHhHHHHHHHHH-----hh------hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcc
Q psy12460 72 TSIPAILKMLQDEWDAIML-----HS------FTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQ 140 (171)
Q Consensus 72 tSIP~lL~~lQnEWDa~mL-----E~------f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~ 140 (171)
...=+.|..|+++|...+= |. =.|.+++.+.+.+||.+-.++..|---+..+++|-.+.-+.|++++..
T Consensus 237 ~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 237 PETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888877642 11 245666777788888888888888877777777777777777777766
Q ss_pred c---CCCCCCCCC
Q psy12460 141 A---GIATPTTIP 150 (171)
Q Consensus 141 ~---~~~~~~~~~ 150 (171)
+ |..-++..|
T Consensus 317 meerg~~mtD~sP 329 (359)
T PF10498_consen 317 MEERGSSMTDGSP 329 (359)
T ss_pred HHHhcCCCCCCCH
Confidence 4 444455544
No 114
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.85 E-value=1.2e+02 Score=22.05 Aligned_cols=44 Identities=14% Similarity=0.346 Sum_probs=30.4
Q ss_pred hHHHHHhHHHHHHHHHhhhHHHHHHHHHHHH----------HHHHhhhhhhHHH
Q psy12460 75 PAILKMLQDEWDAIMLHSFTQRQQLQTARQE----------LSHALYQHDAACR 118 (171)
Q Consensus 75 P~lL~~lQnEWDa~mLE~f~LRkql~~~rqe----------LS~aLYq~DAA~R 118 (171)
--||..+..|+|+++-|....|.+-+..... +-+++|+=..+-+
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~ 56 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999987777665554433 3345565555543
No 115
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=36.44 E-value=49 Score=24.16 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHh
Q psy12460 94 TQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALAT 136 (171)
Q Consensus 94 ~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~ 136 (171)
+||.+|+++++||++--=-.+.-..++..|. ++.+..|..
T Consensus 1 kL~~~L~~L~~eL~~~~~ld~~~~~~L~~l~---~dIe~~L~~ 40 (85)
T PF14357_consen 1 KLQELLEKLHQELEQNPPLDEETRAELSSLD---DDIEAQLAE 40 (85)
T ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HHHHHHHhc
Confidence 4789999999999865554555555555443 444555555
No 116
>KOG2470|consensus
Probab=36.10 E-value=1.4e+02 Score=28.44 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHH-HHHhhhhhhHH-HHHHHHhhhhHHHHHHHHhh-CcccCC
Q psy12460 80 MLQDEWDAIMLHSFTQRQQLQTARQEL-SHALYQHDAAC-RVIARLTKEVTAAREALATL-KPQAGI 143 (171)
Q Consensus 80 ~lQnEWDa~mLE~f~LRkql~~~rqeL-S~aLYq~DAA~-RViarl~kErd~ar~~L~~l-~~~~~~ 143 (171)
.|..|-.-+=-|.|..-+.-.++-++| -.-=-++|+|+ -|++-.++||+++|.--.++ ..+.|+
T Consensus 377 EL~~Eiki~N~e~y~~s~~w~q~lt~Ller~q~~rseasq~~L~ew~~eRq~lR~~tK~~FN~qFGs 443 (510)
T KOG2470|consen 377 ELEREIKIQNTEQYRFSQTWLQILTGLLERMQAQRSEASQSVLDEWMKERQELRDTTKQMFNAQFGS 443 (510)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444444455665555444433333 22222555555 68899999999999866554 233454
No 117
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=35.75 E-value=43 Score=22.45 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=23.6
Q ss_pred CCCceecCCCCeeeehHHHHHHHHhcCCCC
Q psy12460 15 PEHPVVSPISGSVFEKRLIEKYIKENGTDP 44 (171)
Q Consensus 15 ~~~PVvSp~SG~VFEr~lIekyI~~~G~dP 44 (171)
-+.||+......++|=..|.+||.+...+|
T Consensus 45 ~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 45 GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 366888866566899999999999876544
No 118
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=35.73 E-value=46 Score=22.54 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q psy12460 92 SFTQRQQLQTARQELSHALYQHDAACRVIARLTKEV 127 (171)
Q Consensus 92 ~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kEr 127 (171)
.|--++.++++=.||..+|++-|-+..++-+++.+-
T Consensus 16 ~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~i 51 (75)
T PF02881_consen 16 IFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENI 51 (75)
T ss_dssp SSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred ccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHH
Confidence 344578888899999999999999998888776543
No 119
>smart00338 BRLZ basic region leucin zipper.
Probab=35.54 E-value=1.2e+02 Score=20.37 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=23.9
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy12460 78 LKMLQDEWDAIMLHSFTQRQQLQTARQELSH 108 (171)
Q Consensus 78 L~~lQnEWDa~mLE~f~LRkql~~~rqeLS~ 108 (171)
+..|+.+-..+.-|+-.|+.+++.+++|+..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888877654
No 120
>PLN02777 photosystem I P subunit (PSI-P)
Probab=34.62 E-value=39 Score=28.28 Aligned_cols=21 Identities=33% Similarity=0.798 Sum_probs=17.4
Q ss_pred CCCCCChhHHHHHhHHHHHHH
Q psy12460 68 PPQATSIPAILKMLQDEWDAI 88 (171)
Q Consensus 68 ~~~~tSIP~lL~~lQnEWDa~ 88 (171)
+...++.+.+++++|+.||.+
T Consensus 70 ~~~~~~~~ei~k~~~e~Wd~~ 90 (167)
T PLN02777 70 EVETTELPEIVKTVQEAWDKV 90 (167)
T ss_pred ccccccHHHHHHHHHHHHhhh
Confidence 344578899999999999975
No 121
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=33.62 E-value=1.4e+02 Score=30.17 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=37.6
Q ss_pred HHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHH------hhh--------------hhhHHHHHHHHhhhhHHHHHHHHh
Q psy12460 77 ILKMLQDEWDAIMLHSFTQRQQLQTARQELSHA------LYQ--------------HDAACRVIARLTKEVTAAREALAT 136 (171)
Q Consensus 77 lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~a------LYq--------------~DAA~RViarl~kErd~ar~~L~~ 136 (171)
-|+.+|+++--.-.|+..++-.++.++.|| .+ |-+ .|-|..=+.||-.|||.+...|..
T Consensus 54 ~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~ 132 (775)
T PF10174_consen 54 ELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELER 132 (775)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666555555555555555555554 32 212 366777888888888877766666
Q ss_pred hCc
Q psy12460 137 LKP 139 (171)
Q Consensus 137 l~~ 139 (171)
+..
T Consensus 133 lr~ 135 (775)
T PF10174_consen 133 LRK 135 (775)
T ss_pred HHH
Confidence 553
No 122
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=33.54 E-value=48 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q psy12460 96 RQQLQTARQELSHALYQHDAACRVIARLTKEV 127 (171)
Q Consensus 96 Rkql~~~rqeLS~aLYq~DAA~RViarl~kEr 127 (171)
+..++.+++.|..-||.++-|..+|.++++.-
T Consensus 13 ~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~ 44 (127)
T PF06309_consen 13 KYNITGLEKDLQRNLFGQHLAVEVVVNAIKGH 44 (127)
T ss_pred CCCHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999866
No 123
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=33.10 E-value=21 Score=24.98 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=15.6
Q ss_pred cccccCCCCCCC----Cc--eec-CCCCeeeehHHHHHHHHh
Q psy12460 5 GTKTVMSNEVPE----HP--VVS-PISGSVFEKRLIEKYIKE 39 (171)
Q Consensus 5 s~~CaISge~~~----~P--VvS-p~SG~VFEr~lIekyI~~ 39 (171)
++-|.|...... .| |+. +.+|.+|-...+.+|+..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~ 43 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLS 43 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHH
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHH
Confidence 566888776532 23 332 478999999999999975
No 124
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.43 E-value=2e+02 Score=21.02 Aligned_cols=54 Identities=28% Similarity=0.369 Sum_probs=40.3
Q ss_pred HHHHHHH-HHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCCCCCCCCCC
Q psy12460 95 QRQQLQT-ARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQ 151 (171)
Q Consensus 95 LRkql~~-~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~~~~~~~~~ 151 (171)
.|...++ +=.||+.+|-++- .+|.|+-..-+.+-+.+..++.+...+++..-|+
T Consensus 15 ~r~AfQE~tieeLn~~laEq~---~~i~k~q~qlr~L~~kl~~~~~~~~~~~~~etpP 69 (72)
T COG2900 15 IRLAFQEQTIEELNDALAEQQ---LVIDKLQAQLRLLTEKLKDLQPSAIASPAEETPP 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcccccCCCcccCCC
Confidence 3544444 7789999998774 6788887777777888888898888887774333
No 125
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.06 E-value=1.9e+02 Score=27.79 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=49.1
Q ss_pred CChhHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHhhhhHHHHHHHHhhCcc
Q psy12460 72 TSIPAILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQ-HDAACRVIARLTKEVTAAREALATLKPQ 140 (171)
Q Consensus 72 tSIP~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq-~DAA~RViarl~kErd~ar~~L~~l~~~ 140 (171)
-.+=.-|..+..+=+.+.-||=+||+....+.++...||-. +.....=.-.|-.|+.+++..|..|+.+
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999999999999999999999998843 2223334455555666666666665543
No 126
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.73 E-value=3.3e+02 Score=22.93 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCc
Q psy12460 82 QDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKP 139 (171)
Q Consensus 82 QnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~ 139 (171)
|.+=|.+..|.-.|..++.++.+|+...=.+++--.+.++..-+|.+++.+.+.++..
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555667777777777777777766666777777777777777777776666653
No 127
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=30.63 E-value=30 Score=21.31 Aligned_cols=29 Identities=17% Similarity=0.458 Sum_probs=19.7
Q ss_pred ehHHHHHHHHhcCCCCCCCCCCCccCcccc
Q psy12460 29 EKRLIEKYIKENGTDPINAERLTLEQLIDI 58 (171)
Q Consensus 29 Er~lIekyI~~~G~dPITgepLt~~DLIpl 58 (171)
.-+-+.+||.++|. |+.....+.++|+..
T Consensus 5 s~~~L~~wL~~~gi-~~~~~~~~rd~Ll~~ 33 (38)
T PF10281_consen 5 SDSDLKSWLKSHGI-PVPKSAKTRDELLKL 33 (38)
T ss_pred CHHHHHHHHHHcCC-CCCCCCCCHHHHHHH
Confidence 34678999999996 444333577777653
No 128
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=30.30 E-value=2.1e+02 Score=21.79 Aligned_cols=45 Identities=27% Similarity=0.242 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCCC
Q psy12460 93 FTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIA 144 (171)
Q Consensus 93 f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~~ 144 (171)
-.||.||+=+..|..- =+|=++.+-.+.+.++.+|++++...|..
T Consensus 4 aeLR~qLqFvEEEa~L-------lRRkl~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 4 AELRRQLQFVEEEAEL-------LRRKLSELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3689999888877532 36899999999999999999999776644
No 129
>KOG3156|consensus
Probab=29.94 E-value=1.1e+02 Score=26.57 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=19.8
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy12460 79 KMLQDEWDAIMLHSFTQRQQLQTARQELSHAL 110 (171)
Q Consensus 79 ~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aL 110 (171)
+.-.+|.+.+--|+=+|+..++++|+.|.|-+
T Consensus 112 S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei 143 (220)
T KOG3156|consen 112 SIERSEFANLRAENEKLKNDLEKLKSSLRHEI 143 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666666666666666666666665543
No 130
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=29.82 E-value=1.1e+02 Score=25.12 Aligned_cols=45 Identities=22% Similarity=0.147 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhC
Q psy12460 91 HSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLK 138 (171)
Q Consensus 91 E~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~ 138 (171)
|...|++||.+--- -++= -.--+++|.|...--.|+||++|.+..
T Consensus 95 EYM~lKkqLae~il--~~s~-~~~e~v~v~a~a~v~~eeAr~aleeag 139 (153)
T COG4008 95 EYMELKKQLAEYIL--GHSE-PPVEEVEVLADAFVTPEEAREALEEAG 139 (153)
T ss_pred HHHHHHHHHHHHHh--ccCC-CcHHHHHHHHHhcCCHHHHHHHHHHcC
Confidence 55677777765211 1111 123468999999989999999998753
No 131
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=29.78 E-value=1.1e+02 Score=22.98 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=15.7
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHH
Q psy12460 78 LKMLQDEWDAIMLHSFTQRQQLQTARQE 105 (171)
Q Consensus 78 L~~lQnEWDa~mLE~f~LRkql~~~rqe 105 (171)
+.-|+++=+++.-|+-.||++|+.-|.|
T Consensus 51 v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666555443
No 132
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.42 E-value=1.4e+02 Score=25.23 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=23.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHH
Q psy12460 87 AIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALA 135 (171)
Q Consensus 87 a~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~ 135 (171)
.-..+.++++++.+++++|+..-- .+. .-...+.+|.+++|+.|.
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~--~~~--~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELE--SRL--QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHhc
Confidence 334455666666666666654421 111 111345667777777654
No 133
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=28.87 E-value=21 Score=27.51 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCC----CCCCCCCccCccccCCCCCCCCCCCCCCChhHHHHHhHHHHHHHHHhhhHHHHHHH
Q psy12460 31 RLIEKYIKENGTDP----INAERLTLEQLIDIKVSPVTKPKPPQATSIPAILKMLQDEWDAIMLHSFTQRQQLQ 100 (171)
Q Consensus 31 ~lIekyI~~~G~dP----ITgepLt~~DLIplk~~~~~~pr~~~~tSIP~lL~~lQnEWDa~mLE~f~LRkql~ 100 (171)
+.-.+|+++||.+| +-.+|++.++|..+ |+.+.+.|+.++-..-+.=+.|+
T Consensus 15 rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~-------------------l~~~g~~~~~li~t~~~~~r~L~ 69 (117)
T COG1393 15 RKALAWLEEHGIEYTFIDYLKTPPSREELKKI-------------------LSKLGDGVEELINTRGTTYRELN 69 (117)
T ss_pred HHHHHHHHHcCCCcEEEEeecCCCCHHHHHHH-------------------HHHcCccHHHHHHhccchHHHcC
Confidence 56788999999988 45567777777655 55666667777766666666555
No 134
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=28.74 E-value=10 Score=24.32 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=15.7
Q ss_pred HHHHHHHhcC-CCCCCCCCCCccC
Q psy12460 32 LIEKYIKENG-TDPINAERLTLEQ 54 (171)
Q Consensus 32 lIekyI~~~G-~dPITgepLt~~D 54 (171)
+++.-+...| .||-||+.+++++
T Consensus 3 lLe~Q~~~gGiidp~tg~~lsv~~ 26 (45)
T PF00681_consen 3 LLEAQLATGGIIDPETGERLSVEE 26 (45)
T ss_dssp HHHHHHTTTSEEETTTTEEEEHHH
T ss_pred eeeeeeeeeeEEeCCCCeEEcHHH
Confidence 4444455556 4999999888764
No 135
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.60 E-value=2.1e+02 Score=27.51 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCc
Q psy12460 94 TQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKP 139 (171)
Q Consensus 94 ~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~ 139 (171)
+|.|+|+.+|+|+-.---+.+.--+.|..+-.|..++++.+..+..
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4678888888777632233333356677777777777777754443
No 136
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=28.06 E-value=3.6e+02 Score=23.35 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHH
Q psy12460 80 MLQDEWDAIMLHSFTQRQQLQTARQ 104 (171)
Q Consensus 80 ~lQnEWDa~mLE~f~LRkql~~~rq 104 (171)
.++++.+.+--+.-.++.++++.++
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~ 165 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQA 165 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444444444444443
No 137
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=27.97 E-value=1.7e+02 Score=19.13 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy12460 94 TQRQQLQTARQELSHALY 111 (171)
Q Consensus 94 ~LRkql~~~rqeLS~aLY 111 (171)
+|+.+++.+|.+|+..+=
T Consensus 7 ~ie~dIe~tR~~La~tvd 24 (49)
T PF12277_consen 7 EIERDIERTRAELAETVD 24 (49)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456667777777766553
No 138
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.94 E-value=2.1e+02 Score=25.69 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHhhhhHHHHHHHHhh
Q psy12460 81 LQDEWDAIMLHSFTQRQQLQTARQELSHALYQ-------HDAACRVIARLTKEVTAAREALATL 137 (171)
Q Consensus 81 lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq-------~DAA~RViarl~kErd~ar~~L~~l 137 (171)
|-||=.+++-+.=.|+..|++....++..--+ .+.=++.+..|..|+|++|++|...
T Consensus 103 LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 103 LDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888777777665444 3445577778888888888888754
No 139
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.72 E-value=1.9e+02 Score=19.30 Aligned_cols=32 Identities=9% Similarity=0.277 Sum_probs=22.7
Q ss_pred HHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy12460 77 ILKMLQDEWDAIMLHSFTQRQQLQTARQELSH 108 (171)
Q Consensus 77 lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~ 108 (171)
.+..|+++-+.+--|+-.|+.+++.+++++..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777776643
No 140
>KOG2169|consensus
Probab=27.05 E-value=45 Score=32.55 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=41.3
Q ss_pred cccccccCCCCCCCCceecCCCCe--eeehHHHHHHHHh---cCC--CCCCCCCCCccCccccC
Q psy12460 3 IFGTKTVMSNEVPEHPVVSPISGS--VFEKRLIEKYIKE---NGT--DPINAERLTLEQLIDIK 59 (171)
Q Consensus 3 ~~s~~CaISge~~~~PVvSp~SG~--VFEr~lIekyI~~---~G~--dPITgepLt~~DLIplk 59 (171)
..||-|+|++.-+.-|+-.-.|+| +|+-. .|++. .++ |||..+....++|+-..
T Consensus 304 ~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~---~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~ 364 (636)
T KOG2169|consen 304 RVSLNCPLSKMRMSLPARGHTCKHLQCFDAL---SYLQMNEQKPTWRCPVCQKAAPFEGLIIDG 364 (636)
T ss_pred eeEecCCcccceeecCCcccccccceecchh---hhHHhccCCCeeeCccCCccccccchhhhH
Confidence 468999999999999998877774 77764 45554 344 99999888888876543
No 141
>PRK07857 hypothetical protein; Provisional
Probab=26.81 E-value=1.4e+02 Score=22.99 Aligned_cols=18 Identities=6% Similarity=0.058 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCccCcccc
Q psy12460 41 GTDPINAERLTLEQLIDI 58 (171)
Q Consensus 41 G~dPITgepLt~~DLIpl 58 (171)
+.+|-|++|.+..+|-.+
T Consensus 16 ~~~~~~~~p~~~~~L~~l 33 (106)
T PRK07857 16 RMPTGTDDPLSDAEIDEL 33 (106)
T ss_pred cCCCCCCCCcchhhHHHH
Confidence 346667777777776544
No 142
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.70 E-value=39 Score=20.29 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=18.4
Q ss_pred CCcccccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCC
Q psy12460 1 MPIFGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAER 49 (171)
Q Consensus 1 ~~~~s~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgep 49 (171)
||+..|.|. .+|++||...-..- ...-.||-.|.+
T Consensus 1 Mp~Y~y~C~-------------~Cg~~fe~~~~~~~-~~~~~CP~Cg~~ 35 (41)
T smart00834 1 MPIYEYRCE-------------DCGHTFEVLQKISD-DPLATCPECGGD 35 (41)
T ss_pred CCCEEEEcC-------------CCCCEEEEEEecCC-CCCCCCCCCCCc
Confidence 677778774 45666654221110 122347777763
No 143
>PLN02985 squalene monooxygenase
Probab=26.53 E-value=1.9e+02 Score=27.07 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=42.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhh-hHHHHHHHHh-hCcccCCCC-------CCCCCCchh
Q psy12460 84 EWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKE-VTAAREALAT-LKPQAGIAT-------PTTIPQPSR 154 (171)
Q Consensus 84 EWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kE-rd~ar~~L~~-l~~~~~~~~-------~~~~~~~~~ 154 (171)
.+.+.+-+.+..||...+.-+.||.+||+-=+| ...| +.++|++... ++.. |.-. +--.|.|.-
T Consensus 371 ~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a------~~~~~~~~l~~~~f~y~~~g-~~~~~~~~~ll~~~~~~p~~ 443 (514)
T PLN02985 371 KVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVA------STDEAKEAMRQGCYDYLCSG-GFRTSGMMALLGGMNPRPLS 443 (514)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHcC-CccccccHHHHcCCCCCcHH
Confidence 445677788889999999999999999983111 1122 3455555543 3321 1111 222567777
Q ss_pred hhhhhc
Q psy12460 155 LWGKFC 160 (171)
Q Consensus 155 ~~~~~~ 160 (171)
|+..|+
T Consensus 444 l~~h~~ 449 (514)
T PLN02985 444 LIYHLC 449 (514)
T ss_pred HHHHHH
Confidence 777765
No 144
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=26.13 E-value=1.7e+02 Score=24.17 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=29.5
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy12460 78 LKMLQDEWDAIMLHSFTQRQQLQTARQELSHAL 110 (171)
Q Consensus 78 L~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aL 110 (171)
+..|+.-=|+++.|-+++.+++.++|+++...+
T Consensus 27 ~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~ 59 (204)
T PRK00373 27 HKLLKDKRDELIMEFFDILDEAKKLREEVEEEL 59 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999998875
No 145
>KOG2150|consensus
Probab=26.01 E-value=1.1e+02 Score=30.18 Aligned_cols=82 Identities=24% Similarity=0.364 Sum_probs=61.3
Q ss_pred ehHHHHHHHHh-------cCCCCCCCCCCCccCccccCCCCCCCCCCCCCCChhHHHHHhHHHHHHH---HHhhhHHHHH
Q psy12460 29 EKRLIEKYIKE-------NGTDPINAERLTLEQLIDIKVSPVTKPKPPQATSIPAILKMLQDEWDAI---MLHSFTQRQQ 98 (171)
Q Consensus 29 Er~lIekyI~~-------~G~dPITgepLt~~DLIplk~~~~~~pr~~~~tSIP~lL~~lQnEWDa~---mLE~f~LRkq 98 (171)
-|++||.-.++ ..+-+++.+-|+..+-+ +|.-+-+--+.-=|-+.+..|+.+.|.+ +||.|..|-.
T Consensus 79 ~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~kl----DPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh~ 154 (575)
T KOG2150|consen 79 NRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKL----DPKEKEKRDTMDWISNQIDELERQVDSFEAEELERFIERHR 154 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhccccccC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788776643 45678888888877654 4444444445556889999999988865 7899999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy12460 99 LQTARQELSHALYQHD 114 (171)
Q Consensus 99 l~~~rqeLS~aLYq~D 114 (171)
.++...||.--+-.+|
T Consensus 155 ~H~~~lEliLr~L~N~ 170 (575)
T KOG2150|consen 155 WHQQKLELILRLLDND 170 (575)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999987776665
No 146
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=25.57 E-value=4.5e+02 Score=23.60 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=35.4
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHH-------HHHHHHHH---HHHHHhhhhhhH----HHHHHHHhhhhHHHHHHHHhhCc
Q psy12460 74 IPAILKMLQDEWDAIMLHSFTQR-------QQLQTARQ---ELSHALYQHDAA----CRVIARLTKEVTAAREALATLKP 139 (171)
Q Consensus 74 IP~lL~~lQnEWDa~mLE~f~LR-------kql~~~rq---eLS~aLYq~DAA----~RViarl~kErd~ar~~L~~l~~ 139 (171)
+-.-|.-+.+-|-.-|..|-+|= -|++.++. +|-..+++-+== +|-.-|+-+..|.++..+..|+.
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666667777777665442 22222222 222333333333 25556666666677777777766
Q ss_pred cc
Q psy12460 140 QA 141 (171)
Q Consensus 140 ~~ 141 (171)
++
T Consensus 162 ~L 163 (302)
T PF09738_consen 162 QL 163 (302)
T ss_pred HH
Confidence 64
No 147
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=25.42 E-value=2.1e+02 Score=19.08 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcc
Q psy12460 103 RQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQ 140 (171)
Q Consensus 103 rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~ 140 (171)
..++-..+...|.. +.+.+-..+|++++.|.+++.+
T Consensus 42 ~~~~l~~Il~~d~~--i~~ll~~~~~~l~~~l~~~~~~ 77 (84)
T PF05400_consen 42 LRELLRRILELDQE--IRALLQARRDELKQELRQLRKG 77 (84)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677764 5566677788888888877543
No 148
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=25.42 E-value=2.2e+02 Score=19.75 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q psy12460 94 TQRQQLQTARQELSHALYQHDAACRVIARLTKE 126 (171)
Q Consensus 94 ~LRkql~~~rqeLS~aLYq~DAA~RViarl~kE 126 (171)
.||++++++-.||-..|=++=+.++-|+++-++
T Consensus 3 ~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 3 ELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999888888888888888887776
No 149
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=25.36 E-value=1.5e+02 Score=19.87 Aligned_cols=45 Identities=24% Similarity=0.224 Sum_probs=27.7
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q psy12460 79 KMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKE 126 (171)
Q Consensus 79 ~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kE 126 (171)
+.|+.+|..+--|.|+||-|...-.-+-. -+-=...|=|||+.-.
T Consensus 9 ~eL~~~l~~l~~elf~Lr~q~~~~~~~~~---~~~~~~Rr~IARi~Ti 53 (57)
T cd00427 9 EELQEKLDELKKELFNLRFQKATGQLENP---HRIRKVRKDIARIKTV 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcCc---HHHHHHHHHHHHHHHH
Confidence 56888999999999999854433222111 1223456777776543
No 150
>KOG4196|consensus
Probab=25.06 E-value=96 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=12.1
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHH
Q psy12460 80 MLQDEWDAIMLHSFTQRQQLQTAR 103 (171)
Q Consensus 80 ~lQnEWDa~mLE~f~LRkql~~~r 103 (171)
.|++|-|.+..|+-.++..++..+
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444443
No 151
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=24.73 E-value=2.6e+02 Score=19.89 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q psy12460 78 LKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDA 115 (171)
Q Consensus 78 L~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DA 115 (171)
+..|.++-+.+-.+.|.++..+.++++-....+=..|.
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~ 40 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDA 40 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 56788899999999999999999999988888866663
No 152
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.70 E-value=2.6e+02 Score=19.84 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=22.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q psy12460 85 WDAIMLHSFTQRQQLQTARQELSHALYQHDAAC 117 (171)
Q Consensus 85 WDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~ 117 (171)
...+--||-.||+++.+.+.|=++-.=+.++|.
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777777766666666665
No 153
>PRK10515 hypothetical protein; Provisional
Probab=24.26 E-value=1.5e+02 Score=22.56 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHhhhhHHHHHHHHhh
Q psy12460 91 HSFTQRQQLQTARQELSHALYQHDAA---CRVIARLTKEVTAAREALATL 137 (171)
Q Consensus 91 E~f~LRkql~~~rqeLS~aLYq~DAA---~RViarl~kErd~ar~~L~~l 137 (171)
|.-+++..|++.|..+.+.|-.-+.- .-+|++++.||+.+-+.....
T Consensus 15 eqrevkt~L~~aR~~~gR~LTNaE~NkvK~e~i~ki~aere~~aK~~R~~ 64 (90)
T PRK10515 15 EQRELKTLLDRARIAHGRPLTNSETNSIKKEYIDKLMAEREAEAKKARQL 64 (90)
T ss_pred HHHHHHHHHHHHHHHcCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778999999999998888765443 378999999999655544433
No 154
>KOG4421|consensus
Probab=23.99 E-value=98 Score=29.71 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHhhhHHHHH
Q psy12460 77 ILKMLQDEWDAIMLHSFTQRQQ 98 (171)
Q Consensus 77 lL~~lQnEWDa~mLE~f~LRkq 98 (171)
-|+.|.++|.|+||-.|..=..
T Consensus 329 plskln~qwealmlrmfdvftr 350 (637)
T KOG4421|consen 329 PLSKLNAQWEALMLRMFDVFTR 350 (637)
T ss_pred chhhhhhHHHHHHHHHHHHHHh
Confidence 4788999999999999987543
No 155
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.94 E-value=3.7e+02 Score=21.26 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=15.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q psy12460 84 EWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLT 124 (171)
Q Consensus 84 EWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~ 124 (171)
+++.+--+.+.+++.+.....++-..--.......=+.++.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 110 ELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 156
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=23.84 E-value=2.7e+02 Score=19.67 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=33.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHH-------HhhhhhhHHHHHHHHhhhhHHHHHHHHhhCc
Q psy12460 88 IMLHSFTQRQQLQTARQELSH-------ALYQHDAACRVIARLTKEVTAAREALATLKP 139 (171)
Q Consensus 88 ~mLE~f~LRkql~~~rqeLS~-------aLYq~DAA~RViarl~kErd~ar~~L~~l~~ 139 (171)
+=-|.-+||.+|+.+..+++. ---.+|.|.+=+..+..|-+++++.+..++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566788888876665543 2235666666666677777777776666543
No 157
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=23.83 E-value=4.2e+02 Score=23.14 Aligned_cols=61 Identities=23% Similarity=0.271 Sum_probs=37.7
Q ss_pred HHhHHHHHHHHHhhhHHHHHHHHHHHHHHHH------hhhhhhHHHHHHHHhhhhHHHHHHHHhhCc
Q psy12460 79 KMLQDEWDAIMLHSFTQRQQLQTARQELSHA------LYQHDAACRVIARLTKEVTAAREALATLKP 139 (171)
Q Consensus 79 ~~lQnEWDa~mLE~f~LRkql~~~rqeLS~a------LYq~DAA~RViarl~kErd~ar~~L~~l~~ 139 (171)
.+|..-|+.++-|+-.+-.+-.++.+.|... -+|.|+-..-+..-.|||-++-....+++.
T Consensus 60 Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK 126 (258)
T cd07680 60 GSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQK 126 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 6778889999999887766665555544332 245555555555556666655554444443
No 158
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=23.68 E-value=3.1e+02 Score=21.81 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHhhCcccCCC
Q psy12460 114 DAACRVIARLTKEVTAAREALATLKPQAGIA 144 (171)
Q Consensus 114 DAA~RViarl~kErd~ar~~L~~l~~~~~~~ 144 (171)
.....-+.++-.+|+.++.....++.+.|.-
T Consensus 108 ~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~ 138 (177)
T PF13870_consen 108 AKLREELYRVKKERDKLRKQNKKLRQQGGLL 138 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445667778888888999888888777764
No 159
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=23.66 E-value=4e+02 Score=25.25 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcc
Q psy12460 83 DEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQ 140 (171)
Q Consensus 83 nEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~ 140 (171)
+|=..++...-.||..|+..+.++...-=+-.+|.-.|..|-.|-+..|..|..++..
T Consensus 302 ~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~ 359 (522)
T PF05701_consen 302 EEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAE 359 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhh
Confidence 4444566666778888888888888877777888888999999999999998877643
No 160
>KOG0994|consensus
Probab=23.41 E-value=1.9e+02 Score=31.61 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=26.0
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHH
Q psy12460 76 AILKMLQDEWDAIMLHSFTQRQQLQTARQ 104 (171)
Q Consensus 76 ~lL~~lQnEWDa~mLE~f~LRkql~~~rq 104 (171)
--|+.||+|.+++..-+-+|++|++.++.
T Consensus 1267 ~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57899999999999999999999987764
No 161
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=23.24 E-value=56 Score=25.63 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=25.1
Q ss_pred CCceecCCCCeeeehHHHHHHHHhcC--CCCCCCCCCCccC
Q psy12460 16 EHPVVSPISGSVFEKRLIEKYIKENG--TDPINAERLTLEQ 54 (171)
Q Consensus 16 ~~PVvSp~SG~VFEr~lIekyI~~~G--~dPITgepLt~~D 54 (171)
..=+++|.+|..|+-.-...+....| .||..|.+|..+|
T Consensus 97 ~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 97 NAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEEDD 137 (147)
T ss_pred CcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEcC
Confidence 34556788899998544333333333 5999999886554
No 162
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.19 E-value=4.8e+02 Score=24.15 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=47.4
Q ss_pred CCChhHHHHHhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhhhhh--------hHHHHHHHHhhhhHHHHHHHHhhCcc
Q psy12460 71 ATSIPAILKMLQDEWDAIML--HSFTQRQQLQTARQELSHALYQHD--------AACRVIARLTKEVTAAREALATLKPQ 140 (171)
Q Consensus 71 ~tSIP~lL~~lQnEWDa~mL--E~f~LRkql~~~rqeLS~aLYq~D--------AA~RViarl~kErd~ar~~L~~l~~~ 140 (171)
.++|.+.|..|.+-|..+.- +.-..|+.+-+--+.|...+-+-+ -+-.=|.-..++-+.+-+.|+.|-.+
T Consensus 102 ~~gl~~~l~~ff~a~~~la~~P~~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~ 181 (456)
T PRK07191 102 STSLATGLNNFFSALSAATQLPDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQK 181 (456)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999987 466778777776666665554321 12222344455555556666666555
Q ss_pred cC
Q psy12460 141 AG 142 (171)
Q Consensus 141 ~~ 142 (171)
+.
T Consensus 182 I~ 183 (456)
T PRK07191 182 IL 183 (456)
T ss_pred HH
Confidence 53
No 163
>KOG4005|consensus
Probab=22.96 E-value=2.2e+02 Score=25.65 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=25.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy12460 85 WDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVI 120 (171)
Q Consensus 85 WDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RVi 120 (171)
=..+|-++.+|+..|+..||||...=-|..-=.|||
T Consensus 120 n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~ 155 (292)
T KOG4005|consen 120 NESLLAKNHELDSELELLRQELAELKQQQQHNTRVI 155 (292)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHH
Confidence 346789999999999999999987654433333443
No 164
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.95 E-value=4.7e+02 Score=22.53 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=32.6
Q ss_pred HHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhh
Q psy12460 77 ILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 137 (171)
Q Consensus 77 lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l 137 (171)
-+..+|.+=....-..-++|+.|+.++++++. +.-.|.++.+.|...++-+..|
T Consensus 68 ~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~-------~~L~Il~~~rkr~~l~~ll~~L 121 (291)
T PF10475_consen 68 SVQELQDELEEALVICKNLRRNLKSADENLTK-------SGLEILRLQRKRQNLKKLLEKL 121 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666677777777777777766 1223445666666555544444
No 165
>smart00250 PLEC Plectin repeat.
Probab=22.92 E-value=30 Score=21.25 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=13.6
Q ss_pred hcC-CCCCCCCCCCccCcc
Q psy12460 39 ENG-TDPINAERLTLEQLI 56 (171)
Q Consensus 39 ~~G-~dPITgepLt~~DLI 56 (171)
..| .||.||+.+++.+-+
T Consensus 10 ~~Giidp~t~~~lsv~eA~ 28 (38)
T smart00250 10 IGGIIDPETGQKLSVEEAL 28 (38)
T ss_pred eeEEEcCCCCCCcCHHHHH
Confidence 345 499999999987644
No 166
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.87 E-value=2.6e+02 Score=23.65 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=12.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHH
Q psy12460 87 AIMLHSFTQRQQLQTARQELS 107 (171)
Q Consensus 87 a~mLE~f~LRkql~~~rqeLS 107 (171)
.+.-|+=+||+++.+++.++.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 73 DLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655555
No 167
>PRK09039 hypothetical protein; Validated
Probab=22.74 E-value=2.6e+02 Score=25.12 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=8.9
Q ss_pred HHHHHHHhhhhHHHHHHHHhhC
Q psy12460 117 CRVIARLTKEVTAAREALATLK 138 (171)
Q Consensus 117 ~RViarl~kErd~ar~~L~~l~ 138 (171)
.+=+.+|-.|=+++|..|+.++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 168
>KOG2930|consensus
Probab=22.57 E-value=50 Score=26.02 Aligned_cols=28 Identities=14% Similarity=0.409 Sum_probs=24.3
Q ss_pred CCCeeeehHHHHHHHHhcCCCCCCCCCC
Q psy12460 23 ISGSVFEKRLIEKYIKENGTDPINAERL 50 (171)
Q Consensus 23 ~SG~VFEr~lIekyI~~~G~dPITgepL 50 (171)
.+.|.|---.|-+||+.+..||+..++-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 4678999999999999999999987653
No 169
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.56 E-value=4.4e+02 Score=23.22 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=20.2
Q ss_pred hHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy12460 75 PAILKMLQDEWDAIMLHSFTQRQQLQTARQELSH 108 (171)
Q Consensus 75 P~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~ 108 (171)
+.-|..+++|-.+...+.=..|+.+++.+++|..
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~ 241 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEE 241 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666665555544
No 170
>KOG1962|consensus
Probab=22.30 E-value=3e+02 Score=23.82 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCcccCC
Q psy12460 81 LQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGI 143 (171)
Q Consensus 81 lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~~~~~ 143 (171)
+..|=|.+--|.=+|+.+++...++|.++==+.||=..=+..+.+|=|.+-+.=++|+.++..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 667778888888999999999999999999999999988888888888888887777766543
No 171
>PRK09039 hypothetical protein; Validated
Probab=22.13 E-value=5.4e+02 Score=23.11 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHH
Q psy12460 93 FTQRQQLQTARQELSH 108 (171)
Q Consensus 93 f~LRkql~~~rqeLS~ 108 (171)
=.|++|++.+|.+|+.
T Consensus 140 ~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 140 ELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 172
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=21.89 E-value=5.1e+02 Score=22.21 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=44.1
Q ss_pred HHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCc
Q psy12460 77 ILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKP 139 (171)
Q Consensus 77 lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~ 139 (171)
.+++|+.-=|+++.|-|++=++....|+|+...+ .||+....---..+...+.+.++..+.
T Consensus 25 g~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~--~~a~~~~~~a~~~~g~~~ve~~~~~~~ 85 (211)
T COG1394 25 GHKLLKLKRDALIMEFRAIVKEAKELREELEKEL--EEAYESLALASAAEGIDAVEEIALVQK 85 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcccHHHHHHHHhCCC
Confidence 4678899999999999999999999999998765 345444444444455555555665554
No 173
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=21.86 E-value=2.6e+02 Score=21.95 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHhhCc
Q psy12460 113 HDAACRVIARLTKEVTAAREALATLKP 139 (171)
Q Consensus 113 ~DAA~RViarl~kErd~ar~~L~~l~~ 139 (171)
++||++-.+.+-+.-.++.+.|+..+.
T Consensus 44 y~aak~~~~~~e~ri~~L~~~L~~a~i 70 (151)
T TIGR01462 44 YHAAKEEQGFNEGRIAELEDLLANAQV 70 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 459999999888888889999988775
No 174
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.82 E-value=4.3e+02 Score=24.24 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=13.6
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy12460 80 MLQDEWDAIMLHSFTQRQQLQTARQELSH 108 (171)
Q Consensus 80 ~lQnEWDa~mLE~f~LRkql~~~rqeLS~ 108 (171)
.+++|-+.+.-+.-.+..+++.++.++..
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445554444433
No 175
>PRK15322 invasion protein OrgB; Provisional
Probab=21.79 E-value=2.2e+02 Score=24.75 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=37.5
Q ss_pred HHHhHHHHHHHHHhhhHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHhhhhHH
Q psy12460 78 LKMLQDEWDAIMLHSFTQRQQLQT-ARQELSHALYQHDAACRVIARLTKEVTA 129 (171)
Q Consensus 78 L~~lQnEWDa~mLE~f~LRkql~~-~rqeLS~aLYq~DAA~RViarl~kErd~ 129 (171)
|..+-.+|++++- +++++++. .|+-||.+|-.-|.=-++..--+++|+.
T Consensus 59 la~~~a~~~~l~~---~l~~~ie~~~r~lls~~Ld~pd~LL~~le~Wl~~l~~ 108 (210)
T PRK15322 59 VAAYLTDNQTMAW---KWMEKIQIYARELFSAAVDHPETLLTVLDEWLRDFDK 108 (210)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4456679999975 78888887 9999999999999666666655555544
No 176
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=21.75 E-value=3.2e+02 Score=22.17 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=33.7
Q ss_pred hHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy12460 75 PAILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARL 123 (171)
Q Consensus 75 P~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl 123 (171)
.+.|..+|+-..+++==.|.+|+|+..+..--...-|..|-=.....-|
T Consensus 120 ~~~LD~LQ~wfe~LAe~l~qlrqqlk~l~~l~~k~~~~~d~~~~~~~~L 168 (182)
T PF01017_consen 120 DSSLDQLQNWFESLAEILWQLRQQLKKLEELQQKLTYENDPIPDQLPQL 168 (182)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TT-THHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhHHHH
Confidence 5779999999999999999999999998665556667776644333333
No 177
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=21.57 E-value=4.3e+02 Score=21.16 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=39.2
Q ss_pred hHHHHHhHHHHHHHHH-hhhHHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhC
Q psy12460 75 PAILKMLQDEWDAIML-HSFTQRQQLQTARQE--LSHALYQHDAACRVIARLTKEVTAAREALATLK 138 (171)
Q Consensus 75 P~lL~~lQnEWDa~mL-E~f~LRkql~~~rqe--LS~aLYq~DAA~RViarl~kErd~ar~~L~~l~ 138 (171)
|.-+..|+.|.+.+.- +--++.+.+...|.+ ||.- -.+|||++-.+++-....++...|++.+
T Consensus 9 ~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~EN-aeY~aAk~~~~~~e~rI~~L~~~L~~A~ 74 (157)
T PRK01885 9 REGYARLKQELDYLWREERPEVTQKVSWAASLGDRSEN-ADYIYGKKRLREIDRRVRFLTKRLENLK 74 (157)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchh-hcHHHHHHHHHHHHHHHHHHHHHHccCE
Confidence 4455666666666543 344444444444421 1111 2468899999999888888888888765
No 178
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=21.56 E-value=1.9e+02 Score=18.14 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=24.9
Q ss_pred CChhHHHHHhHHHHHHHHHhhhHHHHHHHHH
Q psy12460 72 TSIPAILKMLQDEWDAIMLHSFTQRQQLQTA 102 (171)
Q Consensus 72 tSIP~lL~~lQnEWDa~mLE~f~LRkql~~~ 102 (171)
.++|.++..+|+-++.+.-|.-.-|..-+.+
T Consensus 19 ~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 19 ITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999988887777655544
No 179
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.35 E-value=1e+02 Score=21.32 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=8.1
Q ss_pred HHhHHHHHHHHHhhhHH
Q psy12460 79 KMLQDEWDAIMLHSFTQ 95 (171)
Q Consensus 79 ~~lQnEWDa~mLE~f~L 95 (171)
..+|+||+.+-+|.-.|
T Consensus 41 ~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 41 DKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554433
No 180
>PRK14127 cell division protein GpsB; Provisional
Probab=21.33 E-value=2.8e+02 Score=21.49 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=26.0
Q ss_pred hhHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy12460 74 IPAILKMLQDEWDAIMLHSFTQRQQLQTARQELSH 108 (171)
Q Consensus 74 IP~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~ 108 (171)
+=..|...-.+|+++.-|+-.|+.++..++++|..
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778888888888888888777776643
No 181
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=21.30 E-value=4.5e+02 Score=22.69 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=10.9
Q ss_pred CCCCCChhHHHHHh
Q psy12460 68 PPQATSIPAILKML 81 (171)
Q Consensus 68 ~~~~tSIP~lL~~l 81 (171)
-|..+.+|.|-..+
T Consensus 197 ip~~tpLP~L~~~~ 210 (254)
T PF15458_consen 197 IPKITPLPSLSECL 210 (254)
T ss_pred CcccCCCCchhHHH
Confidence 36778888887777
No 182
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=21.29 E-value=3e+02 Score=21.60 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHhhCc
Q psy12460 113 HDAACRVIARLTKEVTAAREALATLKP 139 (171)
Q Consensus 113 ~DAA~RViarl~kErd~ar~~L~~l~~ 139 (171)
+|+|+..-+.+-+.-.++.+.|+.++.
T Consensus 49 y~~a~~~~~~~~~ri~~l~~~L~~a~i 75 (157)
T PRK00226 49 YHAAKEEQGFIEGRIRELEDKLSNAEV 75 (157)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCee
Confidence 457888777777777788888887764
No 183
>KOG4642|consensus
Probab=21.03 E-value=9.1 Score=34.25 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=59.4
Q ss_pred ccccCCCCCCCCceecCCCCeeeehHHHHHHHHhcCCCCCCCCCCCccCccccCCCC---------------C-------
Q psy12460 6 TKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKVSP---------------V------- 63 (171)
Q Consensus 6 ~~CaISge~~~~PVvSp~SG~VFEr~lIekyI~~~G~dPITgepLt~~DLIplk~~~---------------~------- 63 (171)
|.|+|+ .-++.=.++| +|.+|.+.-++.|++-+.-+|++-.+.+.-+|+++-..+ .
T Consensus 26 y~~ai~-~y~raI~~nP-~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 26 YDDAID-CYSRAICINP-TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hchHHH-HHHHHHhcCC-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 567777 6666677788 588999999999999777799999999888998875411 0
Q ss_pred -----CCCCCCCCCChhHHHHHhHH-HHHH
Q psy12460 64 -----TKPKPPQATSIPAILKMLQD-EWDA 87 (171)
Q Consensus 64 -----~~pr~~~~tSIP~lL~~lQn-EWDa 87 (171)
---+++-.-.||..|+.-|. +|..
T Consensus 104 a~sl~r~~~~~~~~di~~~L~~ak~~~w~v 133 (284)
T KOG4642|consen 104 AYSLLREQPFTFGDDIPKALRDAKKKRWEV 133 (284)
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHhCccch
Confidence 01134556789999988776 5543
No 184
>KOG2462|consensus
Probab=20.98 E-value=88 Score=28.16 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=26.2
Q ss_pred cccccCCCCCCCC---------------ceecCCCCeee-ehHHHHHHHHhcC
Q psy12460 5 GTKTVMSNEVPEH---------------PVVSPISGSVF-EKRLIEKYIKENG 41 (171)
Q Consensus 5 s~~CaISge~~~~---------------PVvSp~SG~VF-Er~lIekyI~~~G 41 (171)
..-|.|+|+.|.. |..++-+|..| ||+++..+++.|+
T Consensus 187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS 239 (279)
T KOG2462|consen 187 PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHS 239 (279)
T ss_pred CcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhc
Confidence 4568888887764 44555666666 7888888888765
No 185
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=20.91 E-value=3.2e+02 Score=22.26 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhh
Q psy12460 91 HSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 137 (171)
Q Consensus 91 E~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l 137 (171)
+.+.||++|. +|-.-+-..++..+.|.+++...+...+-..++
T Consensus 113 ~LlelR~~L~----~L~~~l~~~~~~r~~l~~~l~~~~~~~~l~~el 155 (157)
T PF05591_consen 113 KLLELREQLR----DLKGPLDNNPAFRKLLQEILSDPEALEKLKSEL 155 (157)
T ss_pred HHHHHHHHHH----HHHHHhhchHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 4456677774 455567788999999999999887665554444
No 186
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.91 E-value=3.8e+02 Score=25.39 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh
Q psy12460 76 AILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHD 114 (171)
Q Consensus 76 ~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~D 114 (171)
.-|-.+-.+|-++.-|.-.|+..-+...+++..++=+..
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~ 67 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGE 67 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345567889999999999999998888888887766543
No 187
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=20.90 E-value=2.6e+02 Score=23.49 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=32.3
Q ss_pred HHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q psy12460 77 ILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQH 113 (171)
Q Consensus 77 lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~ 113 (171)
.|..+|++++.+-.|...-..+|+.-...+...||+.
T Consensus 6 ~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~k 42 (244)
T PF00956_consen 6 ALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEK 42 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5888999999999998888888888888888888876
No 188
>PRK14126 cell division protein ZapA; Provisional
Probab=20.87 E-value=1.2e+02 Score=22.14 Aligned_cols=20 Identities=0% Similarity=0.290 Sum_probs=17.2
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q psy12460 88 IMLHSFTQRQQLQTARQELS 107 (171)
Q Consensus 88 ~mLE~f~LRkql~~~rqeLS 107 (171)
++=|.|.++++++.++++|-
T Consensus 63 ia~El~k~~~~~~~l~~~~~ 82 (85)
T PRK14126 63 VIHDYIKLKEEYEKLKESMT 82 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66789999999999999873
No 189
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=20.71 E-value=4.1e+02 Score=22.60 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=34.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHhhhhHHHHHHHHhhCcccC
Q psy12460 85 WDAIMLHSFTQRQQLQTARQELSHALY----QHDAACRVIARLTKEVTAAREALATLKPQAG 142 (171)
Q Consensus 85 WDa~mLE~f~LRkql~~~rqeLS~aLY----q~DAA~RViarl~kErd~ar~~L~~l~~~~~ 142 (171)
.+.+-.++-.+++=.++..+-+++.+= +...+.+=|.++++|||.+...|.++..+.+
T Consensus 32 ~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 32 YEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 344444444444444444443333322 2334456789999999999999998876643
No 190
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=20.69 E-value=1.2e+02 Score=22.54 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.9
Q ss_pred HHHhhhhHHHHHHHHhhCc
Q psy12460 121 ARLTKEVTAAREALATLKP 139 (171)
Q Consensus 121 arl~kErd~ar~~L~~l~~ 139 (171)
-..++||||+|.-|+.+..
T Consensus 29 ~~it~ERnELr~~L~~~~~ 47 (84)
T PF04822_consen 29 QKITKERNELRDILALYTE 47 (84)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3578999999999998774
No 191
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.68 E-value=4.5e+02 Score=21.10 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=50.8
Q ss_pred hHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhh
Q psy12460 75 PAILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 137 (171)
Q Consensus 75 P~lL~~lQnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l 137 (171)
=+-|+.-+.+=|++--....|.+.|+....++.++.-+..-+.++|..|-.+-......|..+
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L 71 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQL 71 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888889999999999999999999999999999999999888766555555544444
No 192
>KOG0642|consensus
Probab=20.64 E-value=2e+02 Score=28.40 Aligned_cols=16 Identities=38% Similarity=0.879 Sum_probs=14.5
Q ss_pred CChhHHHHHhHHHHHH
Q psy12460 72 TSIPAILKMLQDEWDA 87 (171)
Q Consensus 72 tSIP~lL~~lQnEWDa 87 (171)
+++||+|.++|-||+.
T Consensus 16 ~~lpGilhyiQ~E~~k 31 (577)
T KOG0642|consen 16 YTLPGILHYIQHEWTK 31 (577)
T ss_pred ccchHHHHHHHhHhhh
Confidence 3499999999999997
No 193
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=20.59 E-value=3.8e+02 Score=20.46 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=34.6
Q ss_pred HHHHH-HHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhh
Q psy12460 95 QRQQL-QTARQELSHALYQHDAACRVIARLTKEVTAAREALATL 137 (171)
Q Consensus 95 LRkql-~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l 137 (171)
+|++. ++.+.+|+.+.-..+.+..-+..|...|++..+.+..-
T Consensus 13 l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 56 (146)
T PRK07720 13 LKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEK 56 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 44888999999999999999999999999988887663
No 194
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=20.52 E-value=63 Score=28.10 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=10.6
Q ss_pred CCCCCCCCCCcc
Q psy12460 42 TDPINAERLTLE 53 (171)
Q Consensus 42 ~dPITgepLt~~ 53 (171)
+||+||+.+..+
T Consensus 138 ~d~~TGe~~~pd 149 (254)
T PF06798_consen 138 KDPFTGEELEPD 149 (254)
T ss_pred eCCCCcccCCcc
Confidence 599999998877
No 195
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.46 E-value=2e+02 Score=24.18 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhH
Q psy12460 82 QDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAA 116 (171)
Q Consensus 82 QnEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA 116 (171)
-||-.+=|+=.|+||++++.+.-||+.-=++++|-
T Consensus 133 fneLRsdivlL~eLk~a~~~~E~El~~lr~r~eal 167 (176)
T PF05499_consen 133 FNELRSDIVLLYELKQALQNCEYELQSLRHRYEAL 167 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 35666678889999999999999999888888774
No 196
>PF15058 Speriolin_N: Speriolin N terminus
Probab=20.37 E-value=2e+02 Score=24.77 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHHHHHHHhhCc
Q psy12460 83 DEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKP 139 (171)
Q Consensus 83 nEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~RViarl~kErd~ar~~L~~l~~ 139 (171)
.+-..+|-||-+|||| .|||||.-++|.+|.+...
T Consensus 12 hqierLv~ENeeLKKl----------------------VrLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 12 HQIERLVRENEELKKL----------------------VRLIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHhhhHHHHHH----------------------HHHHHHHHHHHHHHHHhhc
Confidence 3445677777777774 4777777777777766543
No 197
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=20.27 E-value=2e+02 Score=25.97 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=29.0
Q ss_pred CCChhHHHHH-----------hHHH--HHHHHHhhhHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q psy12460 71 ATSIPAILKM-----------LQDE--WDAIMLHSFTQ-RQQLQTARQELSHALYQHDAACRVIARLTKE 126 (171)
Q Consensus 71 ~tSIP~lL~~-----------lQnE--WDa~mLE~f~L-Rkql~~~rqeLS~aLYq~DAA~RViarl~kE 126 (171)
..|+|+++.- +|++ .+.++-+.-.+ |+++.+-..++-..| +.+|+.|+ |+.+.|
T Consensus 279 ~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~~~~~~~~~~~~l~~~l-~~~a~~~~-A~~i~~ 346 (347)
T PRK14089 279 HIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKEMDREKFFKKSKELREYL-KHGSAKNV-AKILKE 346 (347)
T ss_pred eeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHH-HHHHhc
Confidence 5788888865 7775 34444333222 333444444444444 34777776 444443
No 198
>PF15456 Uds1: Up-regulated During Septation
Probab=20.10 E-value=4.3e+02 Score=20.65 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q psy12460 83 DEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACR 118 (171)
Q Consensus 83 nEWDa~mLE~f~LRkql~~~rqeLS~aLYq~DAA~R 118 (171)
+|-|.+=-|...|-..++.+|.-|.--.=-+|||.+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~s 57 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHS 57 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666655555666665
Done!