RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12460
(171 letters)
>gnl|CDD|203998 pfam08606, Prp19, Prp19/Pso4-like. This regions is found
specifically in PRP19-like protein. The region
represented by this family covers the sequence
implicated in self-interaction and a coiled-coiled
motif. PRP19-like proteins form an oligomer that is
necessary for spliceosome assembly.
Length = 70
Score = 123 bits (310), Expect = 2e-37
Identities = 50/70 (71%), Positives = 55/70 (78%)
Query: 69 PQATSIPAILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVT 128
P ATSIP++L LQ+EWDAIML +F R+QL RQELSHALYQHDAACRVIARL KE
Sbjct: 1 PTATSIPSLLSTLQNEWDAIMLETFELRKQLDQTRQELSHALYQHDAACRVIARLIKERD 60
Query: 129 AAREALATLK 138
AREALA L
Sbjct: 61 EAREALAELT 70
>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain. Modified RING
finger domain, without the full complement of
Zn2+-binding ligands. Probable involvement in
E2-dependent ubiquitination.
Length = 63
Score = 61.1 bits (149), Expect = 2e-13
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 11 SNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKVSPVTKPKPP 69
S EV + PV+ P SG +E+ IEK++ +GTDP+ + LT E LI K
Sbjct: 7 SLEVMKDPVILP-SGQTYERSAIEKWLLSHGTDPVTGQPLTHEDLIPN---LALKSAIQ 61
>gnl|CDD|203049 pfam04564, U-box, U-box domain. This domain is related to the
Ring finger pfam00097 but lacks the zinc binding
residues.
Length = 73
Score = 33.8 bits (78), Expect = 0.006
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 18 PVVSPISGSVFEKRLIEKYIKENG-TDPINAERLTLEQLI 56
PV+ P SG +++ IE+++ TDP E LT +QLI
Sbjct: 17 PVILP-SGITYDRSTIERHLLSVDPTDPFTREPLTHDQLI 55
>gnl|CDD|224455 COG1538, TolC, Outer membrane protein [Cell envelope biogenesis,
outer membrane / Intracellular trafficking and
secretion].
Length = 457
Score = 32.5 bits (74), Expect = 0.084
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 94 TQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREAL--ATLKPQAGIAT 145
Q + TARQE++ AL +AA + L + V AA+EAL A + QAG+ T
Sbjct: 353 QYEQTVLTARQEVADALAALEAALEQLQALRQAVEAAQEALELARERYQAGVRT 406
>gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain.
The small mechanosensitive channel, MscS, is a part of
the turgor-driven solute efflux system that protects
bacteria from lysis in the event of osmotic shock. The
MscS protein alone is sufficient to form a functional
mechanosensitive channel gated directly by tension in
the lipid bilayer. The MscS proteins are heptamers of
three transmembrane subunits with seven converging M3
domains, and this MscS_porin is towards the N-terminal
of the molecules. The high concentration of negative
charges at the extracellular entrance of the pore helps
select the cations for efflux.
Length = 239
Score = 29.5 bits (67), Expect = 0.63
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 65 KPKPPQATSIPAILKMLQDEWDAIMLHSFTQRQQLQTA--RQELSHALYQHDAACRVIAR 122
P A +LQ E A+ +L + RQEL Q D + I R
Sbjct: 138 ALSPGGTPLAQAQRTLLQAELAALKAQIEELELELLSNNNRQELLRL--QRDLLKKRIER 195
Query: 123 LTKEVTAAREAL 134
L E+ A + A+
Sbjct: 196 LEAELQALQNAI 207
>gnl|CDD|204632 pfam11365, DUF3166, Protein of unknown function (DUF3166). This
eukaryotic family of proteins has no known function.
Length = 97
Score = 28.7 bits (64), Expect = 0.70
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 96 RQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAG 142
R QLQ ++E + + +A+L +E L K + G
Sbjct: 7 RCQLQFVKEEAA-------LMRKKLAKLEEEKDKVEGELQKYKSKYG 46
>gnl|CDD|217420 pfam03199, GSH_synthase, Eukaryotic glutathione synthase.
Length = 105
Score = 28.3 bits (64), Expect = 0.76
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 19 VVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLID 57
VV P +VF++R +E + E I + R T +L +
Sbjct: 8 VVQPNERNVFDQRHLEYALLE--RHGIRSIRRTFAELHE 44
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 29.8 bits (67), Expect = 0.87
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 24/103 (23%)
Query: 23 ISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKVSPVTKPKPPQATSIPAILKMLQ 82
IS VFE+ + R LE+L + S V P Q S+ A L++L
Sbjct: 185 ISAMVFEQH--------------KSARTELEKL-QAQASGVALLTPEQVQSLTASLQVLT 229
Query: 83 DEWDAIM---------LHSFTQRQQLQTARQELSHALYQHDAA 116
DE ++ L+ T+ +LQ AL Q AA
Sbjct: 230 DEEKQLLTAQQQQQQSLNWLTRLDELQQEASRRQQALQQALAA 272
>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit.
Nse1 and Nse2 are novel non-SMC subunits of the fission
yeast Smc5-6 DNA repair complex. This family is the
zinc-finger domain similar to the MIZ type of
zinc-finger.
Length = 57
Score = 27.2 bits (61), Expect = 0.91
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 16 EHPVVSPISGSVFEKRLIEKYIKENGT 42
E PV S VFEK I ++ N T
Sbjct: 22 EEPVTSKKCNHVFEKDAILSMLRRNKT 48
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 29.5 bits (67), Expect = 1.0
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 67 KPPQATSIPAILKMLQDEWDAIMLHSFTQRQQLQ--TARQELSHALYQHDAACRVIARLT 124
K P+ +LQ E + + QR+ L+ T Q+L Q D I RL
Sbjct: 183 KVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQK--QRDYLTARIQRLE 240
Query: 125 KEVTAAREAL 134
++ +EA+
Sbjct: 241 HQLQLLQEAI 250
>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2
[Posttranslational modification, protein turnover,
chaperones].
Length = 929
Score = 29.2 bits (65), Expect = 1.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 8 TVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLI 56
T+M + PV P S ++ I+ ++ +GTDP N LTL+ +
Sbjct: 862 TIMKD-----PVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVT 905
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 29.2 bits (65), Expect = 1.3
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 57 DIKVSPVTKPKPPQATSIPA--ILKMLQDEWDAIMLHSFTQRQQLQTARQELSHAL-YQH 113
D + PQA + PA + L+ +A M +QRQ++ +A +++ A+ +
Sbjct: 61 DTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANM----SQRQRVASAAEDMIAAMALRQ 116
Query: 114 DAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQP 152
+ A V AA + A A T P+
Sbjct: 117 PVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQ 155
>gnl|CDD|206365 pfam14197, Cep57_CLD_2, Centrosome localisation domain of PPC89.
The N-terminal region of the fission yeast spindle pole
body protein PPC89 has low similarity to the human Cep57
protein. The CLD or centrosome localisation domain of
Cep57 and PPC89 is found at the N-terminus. This region
localises to the centrosome internally to gamma-tubulin,
suggesting that it is either on both centrioles or on a
centromatrix component. This N-terminal region can also
multimerise with the N-terminus of other Cep57
molecules. The C-terminal part, Family Cep57_MT_bd,
pfam06657, is the microtubule-binding region of Cep57
and PPC89.
Length = 69
Score = 26.9 bits (60), Expect = 1.8
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 81 LQDEWDAIMLHSFTQRQQLQTA--RQELSHALYQHDAACRVIARLTKEVTAAREALATLK 138
L++ D +++ +E AL Q A L E A R+ L L+
Sbjct: 10 LRNRLD--SATRKVAVHEIELKRLNRERDSALRQLGVAYLECQELKAENEALRKELEELR 67
Query: 139 PQ 140
Q
Sbjct: 68 AQ 69
>gnl|CDD|200248 TIGR03152, cyto_c552_HCOOH, formate-dependent cytochrome c nitrite
reductase, c552 subunit. Members of this protein family
are cytochrome c552, a component of cytochrome c nitrite
reductase, which is known more formally as nitrite
reductase (cytochrome; ammonia-forming) (EC 1.7.2.2).
Nitrate can be reduced by several enzymes. EC 1.7.2.2
reduces nitrite all the way to ammonia, rather than to
ammonium hydroxide (nitrite reductase (NAD(P)H), EC
1.7.1.4) or nitric oxide (nitrite reductase
(NO-forming), EC 1.7.2.1). Some examples of EC 1.7.2.2
occur in a seven gene system that enables
formate-dependent nitrite reduction, but is also found
in simpler contexts. Members of this protein family,
however, belong to the formate-dependent system [Energy
metabolism, Electron transport].
Length = 439
Score = 28.3 bits (63), Expect = 1.9
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 107 SHALYQH--DAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQPS 153
SH ++ H + A RV+ + AR LA L + GI TP IP S
Sbjct: 350 SHGVHMHAPEVALRVLGTALDKAADARAKLARLLAKKGITTPIQIPDIS 398
>gnl|CDD|197312 cd09078, nSMase, Neutral sphingomyelinases (nSMase) catalyze the
hydrolysis of sphingomyelin in biological membranes to
ceramide and phosphorylcholine. Sphingomyelinases
(SMase) are phosphodiesterases that catalyze the
hydrolysis of sphingomyelin to ceramide and
phosphorylcholine. Eukaryotic SMases have been
classified according to their pH optima and are known as
acid SMase, alkaline SMase, and neutral SMase (nSMase).
Eukaryotic proteins in this family are nSMases, and are
activated by a variety of stress-inducing agents such as
cytokines or UV radiation. Ceramides and other metabolic
derivatives, including sphingosine, are lipid "second
messenger" molecules that participate in the regulation
of stress-induced cellular responses, including cell
death, adhesion, differentiation, and proliferation.
Bacterial neutral SMases, which also belong to this
domain family, are secreted proteins that act as
membrane-damaging virulence factors. They promote
colonization of the host tissue. This family belongs to
the large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds.
Length = 280
Score = 28.1 bits (63), Expect = 2.0
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 88 IMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEV--TAAREAL-ATLKPQAGIA 144
+L++ Q + + AL Q+D +EV AR+ L LK +
Sbjct: 13 PLLYNNGDDGQDERLD-LIPKALLQYDVVVL------QEVFDARARKRLLNGLKKEYPYQ 65
Query: 145 TPTTIPQPSRLWGKFCHSSVVV 166
T PS K VV+
Sbjct: 66 TDVVGRSPSGWSSKLVDGGVVI 87
>gnl|CDD|221355 pfam11981, DUF3482, Domain of unknown function (DUF3482). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 289 to 301 amino acids in length.
This domain is found associated with pfam01926. THe
central region of these proteins contains a hydrophobic
region that is similar to pfam05433.
Length = 293
Score = 28.0 bits (63), Expect = 2.1
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 78 LKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALAT 136
L L +EW A + Q+L AR+E + AA R+IA L +V A R ++A+
Sbjct: 32 LATLLEEWRAPL-------QRLIAARRE--QWQARRQAAARLIAELLIDVAALRRSVAS 81
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 28.4 bits (64), Expect = 2.4
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 97 QQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLK---PQAGIATPTTIPQ 151
+QL R EL AL H++ + ++ A+E L+ L P+ + T+
Sbjct: 840 RQLNRRRVELERALADHESQ---EQQQRSQLEQAKEGLSALNRLLPRLNLLADETLAD 894
Score = 26.8 bits (60), Expect = 6.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 96 RQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLK 138
Q+ AR++L A Q +V+A L A R+ L LK
Sbjct: 998 EQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELK 1040
Score = 26.5 bits (59), Expect = 9.2
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 75 PAILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVT---AAR 131
L+ LQ+E +A + + + R L L Q A I RL AA+
Sbjct: 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQAR---IQRLAARAPAWLAAQ 609
Query: 132 EALATLKPQAG 142
+ALA L+ Q+G
Sbjct: 610 DALARLREQSG 620
>gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional.
Length = 702
Score = 28.2 bits (64), Expect = 2.6
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 21 SPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLIDIKVSPVTKPKPP 69
S GS + R+I+ K NA R + +LI +V V K P
Sbjct: 257 SKFYGSDIDPRVIQAARK-------NARRAGVAELITFEVKDVADLKNP 298
>gnl|CDD|219580 pfam07793, DUF1631, Protein of unknown function (DUF1631). The
members of this family are sequences derived from a
group of hypothetical proteins expressed by certain
bacterial species. The region concerned is approximately
440 amino acid residues in length.
Length = 729
Score = 28.0 bits (63), Expect = 2.9
Identities = 10/54 (18%), Positives = 13/54 (24%)
Query: 99 LQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQP 152
L+ R L Y L A +A L Q +P
Sbjct: 566 LKALRAGLEQVGYDPFETEAFFRELEAVHLEAFQAPPELAAQLTALPAVAPAEP 619
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III
C-methyltransferase; Provisional.
Length = 390
Score = 27.8 bits (62), Expect = 3.0
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 70 QATSIPAILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTA 129
QA + A L ++ A+ +Q+Q+L+ ++ + AL D A R A L K++
Sbjct: 61 QAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKAL---DQANRQQAALAKQLDE 117
Query: 130 AREALATL 137
++ +AT+
Sbjct: 118 LQQKVATI 125
>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 388
Score = 27.6 bits (61), Expect = 3.6
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 4 FGTKTVMSNEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPIN---AERLTLEQLID 57
F KTV+ ++ E V + ++E R Y+ + P N AE LT + I+
Sbjct: 312 FSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKIN 368
>gnl|CDD|185273 PRK15375, PRK15375, pathogenicity island 1 effector protein StpP;
Provisional.
Length = 535
Score = 27.1 bits (59), Expect = 6.2
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 107 SHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQPSRLWGKFCHSSVVV 166
+H L Q VIA+ K VTA E K +AG P T+ P+ +F SS+ +
Sbjct: 255 THELTQAVKKIHVIAKELKNVTAELE-----KIEAGAPMPQTMSGPTLGLARFAVSSIPI 309
Query: 167 KVLT 170
T
Sbjct: 310 NQQT 313
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 26.7 bits (59), Expect = 7.1
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 96 RQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTIPQP 152
++Q + R+EL Q R I +L ++ A E + L AT +PQ
Sbjct: 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATGEPVPQM 138
>gnl|CDD|215070 PLN00136, PLN00136, silicon transporter; Provisional.
Length = 482
Score = 26.9 bits (59), Expect = 7.4
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 106 LSHALYQHDAACRVIARLTKEVTAARE--------ALATLKPQAGIATPTTIPQ 151
L+ AL+ +D C V+ E+ A R ALA+ ATP PQ
Sbjct: 112 LASALFTNDTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATPIGNPQ 165
>gnl|CDD|216209 pfam00946, Mononeg_RNA_pol, Mononegavirales RNA dependent RNA
polymerase. Members of the Mononegavirales including
the Paramyxoviridae, like other non-segmented negative
strand RNA viruses, have an RNA-dependent RNA polymerase
composed of two subunits, a large protein L and a
phosphoprotein P. This is a protein family of the L
protein. The L protein confers the RNA polymerase
activity on the complex. The P protein acts as a
transcription factor.
Length = 1065
Score = 26.8 bits (60), Expect = 7.5
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 12 NEVPEHPVVSPISGSVFEKRLIEKYIKENGTDPIN 46
N +P +P +RL+ K++ +N DP
Sbjct: 478 NLLPYNPPRPT-----PSRRLLLKFLNDNKFDPYE 507
>gnl|CDD|153311 cd07627, BAR_Vps5p, The Bin/Amphiphysin/Rvs (BAR) domain of yeast
Sorting Nexin Vps5p. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions. Sorting
nexins (SNXs) are Phox homology (PX) domain containing
proteins that are involved in regulating membrane
traffic and protein sorting in the endosomal system.
SNXs differ from each other in their lipid-binding
specificity, subcellular localization and specific
function in the endocytic pathway. A subset of SNXs also
contain BAR domains. The PX-BAR structural unit
determines the specific membrane targeting of SNXs.
Vsp5p is the yeast counterpart of human SNX1 and is part
of the retromer complex, which functions in the
endosome-to-Golgi retrieval of vacuolar protein sorting
receptor Vps10p, the Golgi-resident membrane protein
A-ALP, and endopeptidase Kex2. BAR domains form dimers
that bind to membranes, induce membrane bending and
curvature, and may also be involved in protein-protein
interactions.
Length = 216
Score = 26.5 bits (59), Expect = 7.6
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 93 FTQR----QQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLK 138
F QR Q Q+A ELS Q + R +++ + L +
Sbjct: 107 FAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAE 156
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional.
Length = 898
Score = 26.9 bits (60), Expect = 7.8
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RLIEKYIKENGTDPINAERLTLEQLIDI---KVSP-VTKPKPPQATSIPAILKMLQDEWD 86
LIEKY+K NG AE++ ++++ V P V PK P +P L L+ ++
Sbjct: 341 ELIEKYLKANGLFRTYAEQIEYSDVLELDLSTVVPSVAGPKRPH-DRVP--LSDLKKDFT 397
Query: 87 AIM 89
A +
Sbjct: 398 ACL 400
>gnl|CDD|218687 pfam05679, CHGN, Chondroitin N-acetylgalactosaminyltransferase.
Length = 504
Score = 26.6 bits (59), Expect = 8.1
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 90 LHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGIATPTTI 149
LH++ R +LQ ARQE+ L + I+R++ + + I P +
Sbjct: 76 LHAYFSRLKLQEARQEII--LLHRE-----ISRMSNLLASEGI--------LEIRWPLGV 120
Query: 150 PQPSR 154
P P +
Sbjct: 121 PPPFQ 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.130 0.380
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,732,181
Number of extensions: 795223
Number of successful extensions: 1034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1030
Number of HSP's successfully gapped: 54
Length of query: 171
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 81
Effective length of database: 6,945,742
Effective search space: 562605102
Effective search space used: 562605102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)