RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12460
         (171 letters)



>d1m0wa1 c.30.1.4 (A:216-323) Eukaryotic glutathione synthetase,
          substrate-binding domain {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 108

 Score = 28.5 bits (64), Expect = 0.20
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 19 VVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLID 57
          +V     +VF+++++E  + E       + RLT + + D
Sbjct: 8  IVQRNERNVFDQKVLELNLLEK--FGTKSVRLTFDDVND 44


>d2hgsa1 c.30.1.4 (A:202-303) Eukaryotic glutathione synthetase,
          substrate-binding domain {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 102

 Score = 27.7 bits (62), Expect = 0.31
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 19 VVSPISGSVFEKRLIEKYIKENGTDPINAERLTLEQLID 57
          +      ++F++R IE  +       I+  R T E + +
Sbjct: 8  IAQEKERNIFDQRAIENELLARN---IHVIRRTFEDISE 43


>d1sgma2 a.121.1.1 (A:78-188) Putative transcriptional regulator
           YxaF {Bacillus subtilis [TaxId: 1423]}
          Length = 111

 Score = 26.6 bits (58), Expect = 0.79
 Identities = 5/63 (7%), Positives = 18/63 (28%)

Query: 76  AILKMLQDEWDAIMLHSFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALA 135
            +   +   W+A+      +    +    +L   +        +++   K+ T       
Sbjct: 45  TVCMKVFKSWEAVFARKLMENGFAEEEANQLGTLINSMIEGGIMLSLTNKDKTPLLLIAE 104

Query: 136 TLK 138
            + 
Sbjct: 105 QIP 107


>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus
           gallus) [TaxId: 9031]}
          Length = 110

 Score = 25.7 bits (56), Expect = 1.5
 Identities = 3/40 (7%), Positives = 13/40 (32%)

Query: 65  KPKPPQATSIPAILKMLQDEWDAIMLHSFTQRQQLQTARQ 104
                  + +    + +   +  I   +  +R +L  + +
Sbjct: 70  TSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR 109


>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 124

 Score = 25.7 bits (56), Expect = 2.0
 Identities = 6/37 (16%), Positives = 17/37 (45%)

Query: 68  PPQATSIPAILKMLQDEWDAIMLHSFTQRQQLQTARQ 104
              A ++    + + D+WD +   +  +R+ L+   +
Sbjct: 86  YHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEK 122


>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 106

 Score = 24.7 bits (53), Expect = 3.5
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 68  PPQATSIPAILKMLQDEWDAIMLHSFTQRQQLQTA 102
            P+   +   L+ L   WDA+     ++   L   
Sbjct: 71  DPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQC 105


>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus
           gallus) [TaxId: 9031]}
          Length = 101

 Score = 24.2 bits (52), Expect = 5.2
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 67  KPPQATSIPAILKMLQDEWDAIMLHSFTQRQQLQ 100
                  I   L    D W  +   +  + Q+L+
Sbjct: 68  NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE 101


>d1es6a2 b.31.1.1 (A:201-321) EV matrix protein {Ebola virus [TaxId:
           205488]}
          Length = 121

 Score = 24.2 bits (52), Expect = 6.6
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 10/59 (16%)

Query: 1   MPIFGTKTVMSNEVPEHPV-------VSPISGSVFEKRLIEKYIKENGTDPINAERLTL 52
           +PI  TK +M  EVPE  V       V+  +G      L+ KYI   G DP+    LT+
Sbjct: 50  VPIDPTKNIMGIEVPETLVLKLTGKKVTSKNGQPIIPVLLPKYI---GLDPVAPGDLTM 105


>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
          {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 208

 Score = 24.6 bits (53), Expect = 7.3
 Identities = 7/34 (20%), Positives = 8/34 (23%)

Query: 64 TKPKPPQATSIPAILKMLQDEWDAIMLHSFTQRQ 97
           KP   Q   IP  L    +        S     
Sbjct: 25 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTAS 58


>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 218

 Score = 24.4 bits (52), Expect = 7.6
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 37 IKENGTDPINA-ERLTL-EQLID-IKVSPVTKPKPPQATSIPAILK 79
          I+ N  + +++ + + L E L+  I      KP   Q  +I   +K
Sbjct: 3  IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIK 48


>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
          DDX48 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 222

 Score = 24.0 bits (51), Expect = 9.3
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 64 TKPKPPQATSIPAILK 79
           KP   Q  +I  I+K
Sbjct: 38 EKPSAIQQRAIKQIIK 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 621,678
Number of extensions: 26976
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 24
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)