BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12461
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JMJ4|PRP19_RAT Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2
SV=2
Length = 504
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 87/121 (71%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
LHSAS+PGILA+D+ DT+KILTGG D VF+K TEQ++A LKGH KKVT VV+HPS
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPS 275
Query: 292 E 292
+
Sbjct: 276 Q 276
>sp|Q99KP6|PRP19_MOUSE Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1
Length = 504
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 87/121 (71%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
LHSAS+PGILA+D+ DT+KILTGG D VF+K TEQ++A LKGH KKVT VV+HPS
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPS 275
Query: 292 E 292
+
Sbjct: 276 Q 276
>sp|Q9UMS4|PRP19_HUMAN Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1
Length = 504
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 87/121 (71%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
LHSAS+PGILA+D+ DT+KILTGG D VF+K +EQ++A LKGH KKVT VV+HPS
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPS 275
Query: 292 E 292
+
Sbjct: 276 Q 276
>sp|Q08E38|PRP19_BOVIN Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1
Length = 504
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 87/121 (71%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
LHSAS+PGILA+D+ DT+KILTGG D VF+K +EQ++A LKGH KKVT VV+HPS
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPS 275
Query: 292 E 292
+
Sbjct: 276 Q 276
>sp|Q5ZMA2|PRP19_CHICK Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1
Length = 505
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 180 EQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQA-GLHSASVP 238
E G++ E+ K QDKAT+LT ERKKR + PE+L A + S + GLHSAS+P
Sbjct: 164 ELAGMTPEIIQKPQDKATVLTTERKKRGKTVPEELVEARGAQQVPGRSPRMWGLHSASIP 223
Query: 239 GILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSE 292
GILA+D+ DT+KILTGG D VF+K +EQ++A LKGH KKVT VV+HPS+
Sbjct: 224 GILALDLCPSDTNKILTGGADKNVIVFDKSSEQILATLKGHSKKVTSVVFHPSQ 277
>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans
GN=T10F2.4 PE=3 SV=2
Length = 492
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 180 EQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVPG 239
+Q G+SE + AKL++K+ LT ERK+R + PE L+ + L + +S G+HS PG
Sbjct: 154 DQQGLSEAILAKLEEKSKSLTAERKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPG 213
Query: 240 ILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSEL 293
I A+DI+ + LTGG D +++ + EQV+ KGH KK+ VV HP +
Sbjct: 214 ITALDIKGNLS---LTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNI 264
>sp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana
GN=PRP19A PE=1 SV=1
Length = 523
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 175 PNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHS 234
PN ++GIS EV +L D L+Q+RKKR P+ L++ D L F +SS LH
Sbjct: 163 PNAKKMRLGISAEVITELTDCNAALSQQRKKRQ--IPKTLASVDALEKFTQLSSHP-LHK 219
Query: 235 ASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY 288
+ PGI +MDI + I TGG D A +F++ + Q+++ L GH KKVT + +
Sbjct: 220 TNKPGIFSMDI-LHSKDVIATGGIDTTAVLFDRPSGQILSTLTGHSKKVTSIKF 272
>sp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana
GN=PRP19B PE=1 SV=3
Length = 525
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 183 GISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVPGILA 242
GIS E+ +L D L+Q+RKKR P+ L++ D L F +SS LH + PGI +
Sbjct: 171 GISAEIITELTDCNAALSQKRKKRQ--IPQTLASIDTLERFTQLSSHP-LHKTNKPGICS 227
Query: 243 MDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY 288
MDI + I TGG D A +F++ + Q+++ L GH KKVT V +
Sbjct: 228 MDI-LHSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKF 272
>sp|Q9AV81|PUB72_ORYSJ U-box domain-containing protein 72 OS=Oryza sativa subsp. japonica
GN=PUB72 PE=2 SV=1
Length = 527
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 183 GISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVPGILA 242
GI+ + +L + T+L+ RKKR P L++ D + + +SS LH + PGIL+
Sbjct: 170 GINPVMIDELTECNTMLSAHRKKRQ--VPPTLASIDAIERYTQISSHP-LHKTNKPGILS 226
Query: 243 MDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSE 292
MDI I TGG D A +F++ + Q++ L GH KK+T + + P +
Sbjct: 227 MDIH-PSKDIIATGGIDTNAVLFDRPSGQILCTLTGHSKKITSLKFVPRD 275
>sp|Q54LT8|STRAP_DICDI Serine-threonine kinase receptor-associated protein
OS=Dictyostelium discoideum GN=strap PE=3 SV=1
Length = 293
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 13/138 (9%)
Query: 163 HANAIAAEAAGTPNQPVEQIGISEEV----------QAKLQDKATILTQERKKRSRAAPE 212
H N I N + G +EV Q L K++I + E K R
Sbjct: 139 HTNTIKTATWSVHNDDIVLSGGLDEVIRIWDLRSGTQVSLCAKSSITSMEFSKDRRFL-- 196
Query: 213 DLSTADNLRAFRNVSSQAGLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQV 272
++TA N F + S L S+P + D SK + GG+D V++ T
Sbjct: 197 -VTTAGNEVTFWDAQSFYPLKVYSLPFDVNCASLHPDNSKFIAGGSDFWVHVYDFSTGNE 255
Query: 273 VAILKGHRKKVTRVVYHP 290
+ + KGH V + P
Sbjct: 256 IEVNKGHHGPVNCCRFSP 273
>sp|O74855|NLE1_SCHPO Ribosome assembly protein C18.05c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC18.05c PE=3 SV=1
Length = 502
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 240 ILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
I++ +S+++TG D A +++ DT+ +A +KGH V+ V + P
Sbjct: 137 IISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVAWAP 187
>sp|Q5VQ78|COB21_ORYSJ Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica
GN=Os06g0143900 PE=2 SV=1
Length = 907
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D ++TG +D A V++ T+ V L+GH ++ V +HP
Sbjct: 198 DRPYLITGSDDSTAKVWDYQTKSCVQTLEGHTHNISAVCFHP 239
>sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2
SV=1
Length = 926
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D ++TG +D A V++ T+ V L+GH V+ V +HP
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239
>sp|Q6H8D5|COB22_ORYSJ Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica
GN=Os02g0209100 PE=2 SV=1
Length = 910
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D ++TG +D A V++ T+ V L+GH V+ V +HP
Sbjct: 198 DRPYLITGSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHP 239
>sp|Q6H8D6|COB23_ORYSJ Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica
GN=Os02g0209000 PE=3 SV=2
Length = 910
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D ++TG +D A V++ T+ V L+GH V+ V +HP
Sbjct: 198 DRPYLITGSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHP 239
>sp|Q0CY32|SCONB_ASPTN Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=sconB PE=3 SV=1
Length = 673
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 245 IQVEDTSK-ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSELQ 294
++V+ TS+ + + +DC +++ DT+Q + GH +V +V+ P E +
Sbjct: 469 VRVDTTSRTVFSASDDCTVRLWDLDTKQCIRTFHGHVGQVQQVIPLPREFE 519
>sp|Q8L828|COB23_ARATH Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2
SV=1
Length = 909
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D ++TG +D A V++ T+ V L GH V+ V +HP
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHP 239
>sp|Q55AR8|SNR40_DICDI U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium
discoideum GN=snrnp40 PE=3 SV=1
Length = 355
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSE 292
D +I G +D Q +++ +T+Q+ L GH V V +HP+E
Sbjct: 293 DGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNE 336
>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2
Length = 1135
Score = 34.3 bits (77), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 219 NLRAFRNVSSQAGLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKG 278
N+ F+ +++ A P ++ +D + I G +D ++N ++V + LKG
Sbjct: 872 NMMTFKTMTT----FMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 927
Query: 279 HRKKVTRVVY 288
H+K+VT + +
Sbjct: 928 HQKRVTGLAF 937
>sp|P58405|STRN3_RAT Striatin-3 OS=Rattus norvegicus GN=Strn3 PE=2 SV=2
Length = 794
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY----HPSE 292
+++G +DC ++N D++ V + HRKK+ +Y HPS+
Sbjct: 735 LMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHPSK 778
>sp|Q9CAA0|COB21_ARATH Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2
SV=2
Length = 920
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D ++TG +D A V++ T+ V L+GH V+ V +HP
Sbjct: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHP 239
>sp|B9HQZ6|SYAP_POPTR Probable alanine--tRNA ligase, chloroplastic OS=Populus trichocarpa
GN=POPTRDRAFT_821063 PE=3 SV=1
Length = 994
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 7 VWIDRIRHDLEFHSGVH---MDNIVSSAKNYMEDSTELKTKVMEL 48
V DR+R D FH +H ++ I + ++ D T L+TKVM L
Sbjct: 697 VAFDRLRFDFNFHRPLHDSELEEIENLINGWIGDGTLLQTKVMSL 741
>sp|Q9ERG2|STRN3_MOUSE Striatin-3 OS=Mus musculus GN=Strn3 PE=1 SV=1
Length = 796
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY----HPSE 292
+++G +DC ++N D++ V + HRKK+ +Y HPS+
Sbjct: 737 LMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHPSK 780
>sp|P41811|COPB2_YEAST Coatomer subunit beta' OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC27 PE=1 SV=1
Length = 889
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
D ++T +D +++ T+ VA L+GH V+ V+HP+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
>sp|A5D7H2|STRN3_BOVIN Striatin-3 OS=Bos taurus GN=STRN3 PE=2 SV=1
Length = 797
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY----HPSE 292
+++G +DC ++N D++ V + HRKK+ +Y HPS+
Sbjct: 738 LMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHPSK 781
>sp|B8M7Q5|SCONB_TALSN Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Talaromyces stipitatus (strain ATCC 10500 / CBS
375.48 / QM 6759 / NRRL 1006) GN=sconB PE=3 SV=1
Length = 667
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 245 IQVEDTSK-ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSELQ 294
++V+ S+ +L+ +DC +++ D++Q + +GH +V +V+ P E +
Sbjct: 474 VRVDSASRTVLSASDDCTVKLWDLDSKQCIRTFQGHVGQVQQVIPLPKEFE 524
>sp|A8X8C6|TG125_CAEBR WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae
GN=tag-125 PE=4 SV=1
Length = 368
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
I++G DC+ V+N T++VV L+GH + V HP
Sbjct: 308 IISGSEDCKIYVWNLQTKEVVQSLEGHTQAVIASDCHP 345
>sp|Q17963|TG125_CAEEL WD repeat-containing protein tag-125 OS=Caenorhabditis elegans
GN=tag-125 PE=4 SV=1
Length = 376
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
I++G DC+ ++N T ++V L+GH + V HP
Sbjct: 316 IISGSEDCKIYIWNLQTREIVQCLEGHTQPVLASDCHP 353
>sp|Q828J2|ARC_STRAW Proteasome-associated ATPase OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=arc PE=3 SV=1
Length = 588
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 17 EFHSGVHMDNIVSSAKNY-MEDSTELKTKVMELKGELM--IDLTEKDDDLESCVMSSEHN 73
+F+SG ++NIV AK ++D E K + + L +D ++++DL + +
Sbjct: 490 DFNSGAMIENIVGRAKKMAIKDFLEHSQKGLRVSHLLQACVDEFKENEDLPNTTNPDDWA 549
Query: 74 RPVGDTGESLVQSESYMQSILGGASLCYKKRQGGSSGHSSSTGPNIGE 121
R G GE +V Y+++++ G +QG +G S T N G+
Sbjct: 550 RISGKKGERIV----YIRTLITG-------KQGADTGRSIDTVANTGQ 586
>sp|Q6GM65|PLAP_XENLA Phospholipase A-2-activating protein OS=Xenopus laevis GN=plaa PE=2
SV=2
Length = 799
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRV 286
I TGGND VF+ D+E+ + LKGH+ V +
Sbjct: 91 IATGGNDQNICVFSLDSEKPLYTLKGHKNTVCSL 124
>sp|C9Z319|ARC_STRSW Proteasome-associated ATPase OS=Streptomyces scabies (strain 87.22)
GN=arc PE=3 SV=2
Length = 588
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 17 EFHSGVHMDNIVSSAKNY-MEDSTELKTKVMELKGELM--IDLTEKDDDLESCVMSSEHN 73
+F+SG ++NIV AK ++D + K + + L +D ++++DL + +
Sbjct: 490 DFNSGAMIENIVGRAKKMAIKDFLDKNQKGLRVSHLLQACVDEFKENEDLPNTTNPDDWA 549
Query: 74 RPVGDTGESLVQSESYMQSILGGASLCYKKRQGGSSGHSSSTGPNIGE 121
R G GE +V Y+++++ G +QG +G S T N G+
Sbjct: 550 RISGKKGERIV----YIRTLITG-------KQGADTGRSIDTVANTGQ 586
>sp|C7YK87|TRM5_NECH7 tRNA (guanine(37)-N1)-methyltransferase OS=Nectria haematococca
(strain 77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI)
GN=TRM5 PE=3 SV=1
Length = 465
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 127 FSGTQNVVPGRVNGEASNGAGVVGHELH-GLRSAHVPHANAIA 168
F ++++P ++GE +G VGH H +R ++P+ N IA
Sbjct: 128 FDVVKSILPEELHGEIPSGFNTVGHVAHLNIRDQYLPYKNIIA 170
>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum
GN=wdr5 PE=3 SV=1
Length = 335
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSE 292
I+TG D ++N T ++V L GH V V HP+E
Sbjct: 276 IVTGSEDNLIYIYNLQTREIVQTLAGHEDVVLTVACHPTE 315
>sp|Q9UT85|YIPC_SCHPO Uncharacterized WD repeat-containing protein C343.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC343.04c PE=4 SV=1
Length = 507
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 248 EDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+D + +L+G D + ++++++ +++A L GH K V V Y+P
Sbjct: 438 KDDTFVLSGSEDDKIRIWHRESGKLLATLSGHVKCVNYVAYNP 480
>sp|Q5RF51|SNR40_PONAB U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii
GN=SNRNP40 PE=2 SV=1
Length = 357
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSE 292
D SKI G D V++ + +++ L GH + V +HP E
Sbjct: 296 DGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDE 339
>sp|Q9Y263|PLAP_HUMAN Phospholipase A-2-activating protein OS=Homo sapiens GN=PLAA PE=1
SV=2
Length = 795
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRV 286
I TGGND +F+ D+ + ILKGH+ V +
Sbjct: 85 IATGGNDHNICIFSLDSPMPLYILKGHKNTVCSL 118
>sp|Q13033|STRN3_HUMAN Striatin-3 OS=Homo sapiens GN=STRN3 PE=1 SV=3
Length = 797
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY 288
+++G +DC ++N D++ V + HRKK+ +Y
Sbjct: 738 LMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDESIY 773
>sp|Q6MPZ6|GCSP_BDEBA Glycine dehydrogenase [decarboxylating] OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=gcvP PE=3 SV=1
Length = 958
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 162 PHANAIAAEAAGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLR 221
PHA +A + A P +G+S + Q K + + T+E+ R A ++ TA L
Sbjct: 280 PHAGFLATKDAFKRLMPGRLVGVSVDSQGKSALRLALQTREQHIRREKATSNICTAQVLL 339
Query: 222 AFRNVSSQAGLHSASVPGILAMDIQVEDTSKILTGG 257
A N++S ++ G+ + ++V+ + IL+ G
Sbjct: 340 A--NMASMYAVYHGPA-GLKKIALRVQRLTAILSAG 372
>sp|Q9RJ58|ARC_STRCO Proteasome-associated ATPase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=arc PE=3 SV=1
Length = 588
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 17 EFHSGVHMDNIVSSAKNY-MEDSTELKTKVMELKGELM--IDLTEKDDDLESCVMSSEHN 73
+F+SG ++NIV AK ++D + K + + L +D ++++DL + +
Sbjct: 490 DFNSGAMIENIVGRAKKMAIKDFLDKNQKGLRVSHLLQACVDEFKENEDLPNTTNPDDWA 549
Query: 74 RPVGDTGESLVQSESYMQSILGGASLCYKKRQGGSSGHSSSTGPNIGE 121
R G GE +V Y+++++ G +QG +G S T N G+
Sbjct: 550 RISGKKGERIV----YIRTLVTG-------KQGADTGRSIDTVANTGQ 586
>sp|Q6C709|PRP46_YARLI Pre-mRNA-splicing factor PRP46 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PRP46 PE=3 SV=2
Length = 441
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSELQ 294
+++ G D A V++ T V +L GH+ + RV + SE Q
Sbjct: 231 LVSAGRDAVARVWDIRTRDPVVVLSGHKSTINRVKFQASEPQ 272
>sp|P27612|PLAP_MOUSE Phospholipase A-2-activating protein OS=Mus musculus GN=Plaa PE=2
SV=4
Length = 794
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRV 286
I TGGND +F+ D+ + ILKGH+ V +
Sbjct: 85 IATGGNDHNICIFSLDSPMPLYILKGHKDTVCSL 118
>sp|P54319|PLAP_RAT Phospholipase A-2-activating protein OS=Rattus norvegicus GN=Plaa
PE=2 SV=3
Length = 795
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRV 286
I TGGND +F+ D+ + ILKGH+ V +
Sbjct: 85 IATGGNDHNICIFSLDSPMPLYILKGHKDTVCSL 118
>sp|Q7VV87|DXS_BORPE 1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=dxs
PE=3 SV=1
Length = 620
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 24 MDNIVSSAKNYMEDSTELKTKVMELKGELMIDLTEKDDDLES------------CVMSSE 71
+D I+S A D ELK EL+G ++ ++ L S V +
Sbjct: 6 LDRILSPADLRQLDRRELKRLADELRGFVLESVSRTGGHLSSNLGTVELSLALHYVFDTP 65
Query: 72 HNRPVGDTGESLVQSESYMQSILGG--ASLCYKKRQGGSSG 110
H+R V D G +SY IL G + + ++QGG SG
Sbjct: 66 HDRIVWDVGH-----QSYPHKILTGRREGMAHLRQQGGISG 101
>sp|Q7W7Q0|DXS_BORPA 1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253) GN=dxs PE=3
SV=1
Length = 620
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 24 MDNIVSSAKNYMEDSTELKTKVMELKGELMIDLTEKDDDLES------------CVMSSE 71
+D I+S A D ELK EL+G ++ ++ L S V +
Sbjct: 6 LDRILSPADLRQLDRRELKRLADELRGFVLESVSRTGGHLSSNLGTVELSLALHYVFDTP 65
Query: 72 HNRPVGDTGESLVQSESYMQSILGG--ASLCYKKRQGGSSG 110
H+R V D G +SY IL G + + ++QGG SG
Sbjct: 66 HDRIVWDVGH-----QSYPHKILTGRREGMAHLRQQGGISG 101
>sp|Q7WL37|DXS_BORBR 1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=dxs PE=3 SV=1
Length = 620
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 24 MDNIVSSAKNYMEDSTELKTKVMELKGELMIDLTEKDDDLES------------CVMSSE 71
+D I+S A D ELK EL+G ++ ++ L S V +
Sbjct: 6 LDRILSPADLRQLDRRELKRLADELRGFVLESVSRTGGHLSSNLGTVELSLALHYVFDTP 65
Query: 72 HNRPVGDTGESLVQSESYMQSILGG--ASLCYKKRQGGSSG 110
H+R V D G +SY IL G + + ++QGG SG
Sbjct: 66 HDRIVWDVGH-----QSYPHKILTGRREGMAHLRQQGGISG 101
>sp|Q6CI08|EIF3I_YARLI Eukaryotic translation initiation factor 3 subunit I OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF34 PE=3 SV=1
Length = 337
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 194 DKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVPG-----ILAMDIQVE 248
DK ++T + K +R L+ D+L+ + + ++SA + IL +
Sbjct: 204 DKTYVITSSKDKTAR-----LTDVDSLKLLKTYKTDTSMNSACITSKKDFVILGGGQDAK 258
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
D + + +A ++K E V +KGH + VV HP+
Sbjct: 259 DVTTTSSRDGKFEARFYHKIFEDEVGRVKGHFGPLNCVVAHPN 301
>sp|Q00799|RBP2_PLAVB Reticulocyte-binding protein 2 OS=Plasmodium vivax (strain Belem)
GN=RBP-2 PE=4 SV=2
Length = 2867
Score = 31.2 bits (69), Expect = 8.6, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 1 MLQFQDVWIDRIRHDLEFHSGVHMDNIVSSAKNYMEDSTELKT---KVMELKGELMIDLT 57
+++ Q +I+++ D + +DN+ S+ Y D TELKT ++ E K + + L
Sbjct: 783 IVEEQTNYINKVMSDSLTNLTAEVDNLRSALDGYRADETELKTYKNRINERKEKFLSTLK 842
Query: 58 EKDDDL 63
E++DD+
Sbjct: 843 EQEDDI 848
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,856,103
Number of Sequences: 539616
Number of extensions: 4295148
Number of successful extensions: 12084
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 11942
Number of HSP's gapped (non-prelim): 188
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)