Your job contains 1 sequence.
>psy12461
MLQFQDVWIDRIRHDLEFHSGVHMDNIVSSAKNYMEDSTELKTKVMELKGELMIDLTEKD
DDLESCVMSSEHNRPVGDTGESLVQSESYMQSILGGASLCYKKRQGGSSGHSSSTGPNIG
ERPALVFSGTQNVVPGRVNGEASNGAGVVGHELHGLRSAHVPHANAIAAEAAGTPNQPVE
QIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVPGI
LAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSELQ
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12461
(294 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0261119 - symbol:Prp19 "Prp19" species:7227 "Droso... 436 4.6e-41 1
ZFIN|ZDB-GENE-030131-263 - symbol:prp19 "PRP19/PSO4 homol... 350 6.0e-32 1
MGI|MGI:106247 - symbol:Prpf19 "PRP19/PSO4 pre-mRNA proce... 348 9.8e-32 1
RGD|708496 - symbol:Prpf19 "PRP19/PSO4 pre-mRNA processin... 348 9.8e-32 1
UNIPROTKB|Q9JMJ4 - symbol:Prpf19 "Pre-mRNA-processing fac... 348 9.8e-32 1
UNIPROTKB|E2R8L3 - symbol:PRPF19 "Uncharacterized protein... 346 2.1e-31 1
UNIPROTKB|Q08E38 - symbol:PRPF19 "Pre-mRNA-processing fac... 344 2.9e-31 1
UNIPROTKB|Q9UMS4 - symbol:PRPF19 "Pre-mRNA-processing fac... 344 2.9e-31 1
UNIPROTKB|B2CCY7 - symbol:PRPF19 "Nuclear matrix protein ... 344 2.9e-31 1
UNIPROTKB|Q5ZMA2 - symbol:PRPF19 "Pre-mRNA-processing fac... 295 1.3e-25 1
UNIPROTKB|H9L227 - symbol:PRPF19 "Pre-mRNA-processing fac... 273 8.7e-24 1
UNIPROTKB|F5GY56 - symbol:PRPF19 "Pre-mRNA-processing fac... 240 2.7e-20 1
WB|WBGene00020423 - symbol:prp-19 species:6239 "Caenorhab... 227 3.6e-18 1
TAIR|locus:2018319 - symbol:MAC3A "AT1G04510" species:370... 190 1.1e-12 1
TAIR|locus:2051094 - symbol:MAC3B "MOS4-associated compl... 181 1.5e-11 1
UNIPROTKB|Q9AV81 - symbol:PUB72 "U-box domain-containing ... 158 8.5e-09 1
GENEDB_PFALCIPARUM|PFC0365w - symbol:PFC0365w "conserved ... 139 5.6e-07 2
UNIPROTKB|O77325 - symbol:PFC0365w "PRP19-like protein, p... 139 5.6e-07 2
>FB|FBgn0261119 [details] [associations]
symbol:Prp19 "Prp19" species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS;TAS]
[GO:0005681 "spliceosomal complex" evidence=ISS;TAS] [GO:0000151
"ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00504 EMBL:AE013599
GO:GO:0005875 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000151
GeneTree:ENSGT00700000104487 KO:K10599 InterPro:IPR013915
Pfam:PF08606 HSSP:P32523 OMA:QWQELKV FlyBase:FBgn0261119
EMBL:AF160906 RefSeq:NP_523783.1 UniGene:Dm.1432 SMR:Q7KLW9
IntAct:Q7KLW9 STRING:Q7KLW9 EnsemblMetazoa:FBtr0086723 GeneID:37123
KEGG:dme:Dmel_CG5519 UCSC:CG5519-RA CTD:321544 InParanoid:Q7KLW9
GenomeRNAi:37123 NextBio:802060 Uniprot:Q7KLW9
Length = 505
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 86/127 (67%), Positives = 100/127 (78%)
Query: 166 AIAAEAAGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRN 225
A+A+EA G P+EQ G+S EV KLQDKAT+LTQERKKR R PEDL T D ++ F
Sbjct: 151 ALASEAGGAAAHPMEQAGMSAEVIQKLQDKATVLTQERKKRGRTVPEDLVTTDQVKNFLT 210
Query: 226 VSSQAGLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTR 285
V+S GLHSASVPGILA+DI D SKILTGGND ATVFNKDTEQ+VAILKGH KK+T+
Sbjct: 211 VASHPGLHSASVPGILALDINSADHSKILTGGNDKNATVFNKDTEQMVAILKGHTKKITK 270
Query: 286 VVYHPSE 292
V+YHP+E
Sbjct: 271 VIYHPNE 277
>ZFIN|ZDB-GENE-030131-263 [details] [associations]
symbol:prp19 "PRP19/PSO4 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0043518 "negative regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IGI;IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003613
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00504
ZFIN:ZDB-GENE-030131-263 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0043518 InterPro:IPR000772
PROSITE:PS50231 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 GeneTree:ENSGT00700000104487 KO:K10599
InterPro:IPR013915 Pfam:PF08606 HSSP:P32523 HOGENOM:HOG000177308
HOVERGEN:HBG053697 OrthoDB:EOG4V6ZGG CTD:321544 EMBL:CT990569
EMBL:CABZ01031654 EMBL:BC045954 IPI:IPI00482227 RefSeq:NP_958875.1
UniGene:Dr.150278 STRING:Q7ZV92 Ensembl:ENSDART00000106593
GeneID:321544 KEGG:dre:321544 NextBio:20807418 Uniprot:Q7ZV92
Length = 505
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 68/131 (51%), Positives = 92/131 (70%)
Query: 162 PHANAIAAEAAGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLR 221
P + A A G + EQ+G++ E+ KLQDKAT+LT ERKKR + PE+L A++L
Sbjct: 147 PASQPAAVGAGGEAMEVSEQVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVRAEDLS 206
Query: 222 AFRNVSSQAGLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRK 281
+R V S AGLHSASVPGIL++D+ DT+K+LTGG D VF++ EQ+VA LKGH K
Sbjct: 207 KYRQVGSHAGLHSASVPGILSLDLCPTDTNKVLTGGADKNVVVFDRREEQIVATLKGHTK 266
Query: 282 KVTRVVYHPSE 292
KV+ V+YHP++
Sbjct: 267 KVSSVIYHPAQ 277
>MGI|MGI:106247 [details] [associations]
symbol:Prpf19 "PRP19/PSO4 pre-mRNA processing factor 19
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000151
"ubiquitin ligase complex" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=ISO] [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000974 "Prp19 complex"
evidence=ISO] [GO:0001833 "inner cell mass cell proliferation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISA;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISA;IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005811 "lipid particle" evidence=IDA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0008610 "lipid biosynthetic process"
evidence=IDA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO] [GO:0034450
"ubiquitin-ubiquitin ligase activity" evidence=ISO] [GO:0042802
"identical protein binding" evidence=ISO] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IDA] [GO:0045666
"positive regulation of neuron differentiation" evidence=ISA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048711 "positive regulation of astrocyte
differentiation" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564
PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320 SMART:SM00504
MGI:MGI:106247 GO:GO:0005654 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0005819 InterPro:IPR019775 GO:GO:0005811
GO:GO:0003677 GO:GO:0006281 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0045665 GO:GO:0008610 GO:GO:0005681
InterPro:IPR000772 GO:GO:0045666 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000398 GO:GO:0000151
GO:GO:0048711 GO:GO:0001833 GO:GO:0000974 GO:GO:0048026
GeneTree:ENSGT00700000104487 KO:K10599 InterPro:IPR013915
Pfam:PF08606 CTD:27339 HOVERGEN:HBG053697 OrthoDB:EOG4V6ZGG
EMBL:AF251503 EMBL:AF386760 EMBL:AK047693 EMBL:AK076998
EMBL:AK088769 EMBL:AK164681 EMBL:BC004070 IPI:IPI00222760
IPI:IPI00480440 IPI:IPI00480507 RefSeq:NP_001240772.1
RefSeq:NP_001240773.1 RefSeq:NP_598890.1 UniGene:Mm.225898
ProteinModelPortal:Q99KP6 SMR:Q99KP6 IntAct:Q99KP6 STRING:Q99KP6
PhosphoSite:Q99KP6 REPRODUCTION-2DPAGE:Q99KP6 PaxDb:Q99KP6
PRIDE:Q99KP6 Ensembl:ENSMUST00000025642 Ensembl:ENSMUST00000178868
GeneID:28000 KEGG:mmu:28000 UCSC:uc008grf.1 InParanoid:Q99KP6
NextBio:306504 Bgee:Q99KP6 Genevestigator:Q99KP6
GermOnline:ENSMUSG00000024735 Uniprot:Q99KP6
Length = 504
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 68/121 (56%), Positives = 87/121 (71%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
LHSAS+PGILA+D+ DT+KILTGG D VF+K TEQ++A LKGH KKVT VV+HPS
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPS 275
Query: 292 E 292
+
Sbjct: 276 Q 276
>RGD|708496 [details] [associations]
symbol:Prpf19 "PRP19/PSO4 pre-mRNA processing factor 19 homolog
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000151
"ubiquitin ligase complex" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA;ISO] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0000974 "Prp19 complex"
evidence=IEA;ISO;ISS] [GO:0001833 "inner cell mass cell
proliferation" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005811 "lipid particle"
evidence=IEA;ISO] [GO:0005819 "spindle" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0008610 "lipid biosynthetic process"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IEA;ISO]
[GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA;ISO]
[GO:0042802 "identical protein binding" evidence=IEA;ISO]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IEA;ISO] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0048711 "positive
regulation of astrocyte differentiation" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SMART:SM00504 EMBL:AB020022 RGD:708496 GO:GO:0005634
GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0005819 InterPro:IPR019775 GO:GO:0003677 GO:GO:0016607
GO:GO:0006281 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
InterPro:IPR000772 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0000209 GO:GO:0000398 GO:GO:0071013 GO:GO:0000151
GO:GO:0000245 GO:GO:0034450 GO:GO:0000974 KO:K10599
InterPro:IPR013915 Pfam:PF08606 HOGENOM:HOG000177308 CTD:27339
HOVERGEN:HBG053697 OrthoDB:EOG4V6ZGG EMBL:BC107669 IPI:IPI00204772
RefSeq:NP_647549.2 UniGene:Rn.19573 ProteinModelPortal:Q9JMJ4
SMR:Q9JMJ4 IntAct:Q9JMJ4 STRING:Q9JMJ4 PhosphoSite:Q9JMJ4
PRIDE:Q9JMJ4 GeneID:246216 KEGG:rno:246216 UCSC:RGD:708496
InParanoid:Q9JMJ4 NextBio:623503 Genevestigator:Q9JMJ4
GermOnline:ENSRNOG00000020897 Uniprot:Q9JMJ4
Length = 504
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 68/121 (56%), Positives = 87/121 (71%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
LHSAS+PGILA+D+ DT+KILTGG D VF+K TEQ++A LKGH KKVT VV+HPS
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPS 275
Query: 292 E 292
+
Sbjct: 276 Q 276
>UNIPROTKB|Q9JMJ4 [details] [associations]
symbol:Prpf19 "Pre-mRNA-processing factor 19" species:10116
"Rattus norvegicus" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0000209 "protein polyubiquitination"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0001833 "inner cell mass cell proliferation"
evidence=IEA] [GO:0005811 "lipid particle" evidence=IEA]
[GO:0008610 "lipid biosynthetic process" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0034450 "ubiquitin-ubiquitin
ligase activity" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0048711 "positive
regulation of astrocyte differentiation" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SMART:SM00504 EMBL:AB020022 RGD:708496 GO:GO:0005634
GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0005819 InterPro:IPR019775 GO:GO:0003677 GO:GO:0016607
GO:GO:0006281 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
InterPro:IPR000772 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0000209 GO:GO:0000398 GO:GO:0071013 GO:GO:0000151
GO:GO:0000245 GO:GO:0034450 GO:GO:0000974 KO:K10599
InterPro:IPR013915 Pfam:PF08606 HOGENOM:HOG000177308 CTD:27339
HOVERGEN:HBG053697 OrthoDB:EOG4V6ZGG EMBL:BC107669 IPI:IPI00204772
RefSeq:NP_647549.2 UniGene:Rn.19573 ProteinModelPortal:Q9JMJ4
SMR:Q9JMJ4 IntAct:Q9JMJ4 STRING:Q9JMJ4 PhosphoSite:Q9JMJ4
PRIDE:Q9JMJ4 GeneID:246216 KEGG:rno:246216 UCSC:RGD:708496
InParanoid:Q9JMJ4 NextBio:623503 Genevestigator:Q9JMJ4
GermOnline:ENSRNOG00000020897 Uniprot:Q9JMJ4
Length = 504
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 68/121 (56%), Positives = 87/121 (71%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
LHSAS+PGILA+D+ DT+KILTGG D VF+K TEQ++A LKGH KKVT VV+HPS
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPS 275
Query: 292 E 292
+
Sbjct: 276 Q 276
>UNIPROTKB|E2R8L3 [details] [associations]
symbol:PRPF19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003613
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00504 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 InterPro:IPR000772
PROSITE:PS50231 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 GeneTree:ENSGT00700000104487 InterPro:IPR013915
Pfam:PF08606 OMA:QWQELKV EMBL:AAEX03011680 EMBL:AAEX03011681
Ensembl:ENSCAFT00000026060 Uniprot:E2R8L3
Length = 513
Score = 346 (126.9 bits), Expect = 2.1e-31, P = 2.1e-31
Identities = 70/132 (53%), Positives = 91/132 (68%)
Query: 161 VPHANAIAAEAAGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNL 220
VP + A AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L
Sbjct: 155 VPSSQPSVA-GAGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEEL 213
Query: 221 RAFRNVSSQAGLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHR 280
+R V+S GLHSAS+PGILA+D+ DT+KILTGG D VF+K +EQ++A LKGH
Sbjct: 214 SKYRQVASHVGLHSASIPGILALDLCPADTNKILTGGADKNVVVFDKSSEQILATLKGHT 273
Query: 281 KKVTRVVYHPSE 292
KKVT VV+HPS+
Sbjct: 274 KKVTSVVFHPSQ 285
>UNIPROTKB|Q08E38 [details] [associations]
symbol:PRPF19 "Pre-mRNA-processing factor 19" species:9913
"Bos taurus" [GO:0000974 "Prp19 complex" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005819 "spindle" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0048711 "positive regulation of astrocyte differentiation"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045665 "negative regulation of
neuron differentiation" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0034450 "ubiquitin-ubiquitin
ligase activity" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0008610 "lipid biosynthetic process"
evidence=IEA] [GO:0005811 "lipid particle" evidence=IEA]
[GO:0001833 "inner cell mass cell proliferation" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
[GO:0000209 "protein polyubiquitination" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000151 "ubiquitin ligase complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003613
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00504 GO:GO:0005634
GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0005819 InterPro:IPR019775 GO:GO:0003677 GO:GO:0016607
GO:GO:0006281 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
InterPro:IPR000772 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0000209 GO:GO:0000398 GO:GO:0071013 GO:GO:0000151
GO:GO:0000245 GO:GO:0034450 GO:GO:0000974
GeneTree:ENSGT00700000104487 KO:K10599 InterPro:IPR013915
Pfam:PF08606 HOGENOM:HOG000177308 OMA:QWQELKV EMBL:BC123437
IPI:IPI00702434 RefSeq:NP_001069108.1 UniGene:Bt.62928
ProteinModelPortal:Q08E38 STRING:Q08E38 PRIDE:Q08E38
Ensembl:ENSBTAT00000019100 GeneID:513868 KEGG:bta:513868 CTD:27339
HOVERGEN:HBG053697 InParanoid:Q08E38 OrthoDB:EOG4V6ZGG
NextBio:20871070 Uniprot:Q08E38
Length = 504
Score = 344 (126.2 bits), Expect = 2.9e-31, P = 2.9e-31
Identities = 67/121 (55%), Positives = 87/121 (71%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
LHSAS+PGILA+D+ DT+KILTGG D VF+K +EQ++A LKGH KKVT VV+HPS
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPS 275
Query: 292 E 292
+
Sbjct: 276 Q 276
>UNIPROTKB|Q9UMS4 [details] [associations]
symbol:PRPF19 "Pre-mRNA-processing factor 19" species:9606
"Homo sapiens" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0001833 "inner cell mass cell proliferation"
evidence=IEA] [GO:0005811 "lipid particle" evidence=IEA]
[GO:0008610 "lipid biosynthetic process" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0048711 "positive regulation of astrocyte
differentiation" evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000974 "Prp19 complex" evidence=IDA] [GO:0000209
"protein polyubiquitination" evidence=IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0034450 "ubiquitin-ubiquitin ligase
activity" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000245 "spliceosomal complex assembly" evidence=IMP]
[GO:0042802 "identical protein binding" evidence=IPI]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003613
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00504 GO:GO:0005737
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0005819
InterPro:IPR019775 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 InterPro:IPR000772
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0000209 GO:GO:0071013
GO:GO:0000151 GO:GO:0000245 GO:GO:0034450 GO:GO:0000974 KO:K10599
InterPro:IPR013915 Pfam:PF08606 HOGENOM:HOG000177308 OMA:QWQELKV
CTD:27339 HOVERGEN:HBG053697 OrthoDB:EOG4V6ZGG EMBL:AJ131186
EMBL:BC008719 EMBL:BC018665 EMBL:BC018698 IPI:IPI00004968
RefSeq:NP_055317.1 UniGene:Hs.502705 ProteinModelPortal:Q9UMS4
SMR:Q9UMS4 IntAct:Q9UMS4 MINT:MINT-1454442 STRING:Q9UMS4
PhosphoSite:Q9UMS4 DMDM:55976619 REPRODUCTION-2DPAGE:IPI00004968
SWISS-2DPAGE:Q9UMS4 PaxDb:Q9UMS4 PeptideAtlas:Q9UMS4 PRIDE:Q9UMS4
DNASU:27339 Ensembl:ENST00000227524 GeneID:27339 KEGG:hsa:27339
UCSC:uc001nqf.3 GeneCards:GC11M060658 HGNC:HGNC:17896 HPA:CAB012448
MIM:608330 neXtProt:NX_Q9UMS4 PharmGKB:PA134941355
InParanoid:Q9UMS4 PhylomeDB:Q9UMS4 GenomeRNAi:27339 NextBio:50404
ArrayExpress:Q9UMS4 Bgee:Q9UMS4 CleanEx:HS_PRPF19
Genevestigator:Q9UMS4 GermOnline:ENSG00000110107 Uniprot:Q9UMS4
Length = 504
Score = 344 (126.2 bits), Expect = 2.9e-31, P = 2.9e-31
Identities = 67/121 (55%), Positives = 87/121 (71%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
LHSAS+PGILA+D+ DT+KILTGG D VF+K +EQ++A LKGH KKVT VV+HPS
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPS 275
Query: 292 E 292
+
Sbjct: 276 Q 276
>UNIPROTKB|B2CCY7 [details] [associations]
symbol:PRPF19 "Nuclear matrix protein 200" species:9823
"Sus scrofa" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048711 "positive regulation of astrocyte
differentiation" evidence=IEA] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0034450
"ubiquitin-ubiquitin ligase activity" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0008610 "lipid biosynthetic
process" evidence=IEA] [GO:0005811 "lipid particle" evidence=IEA]
[GO:0001833 "inner cell mass cell proliferation" evidence=IEA]
[GO:0000974 "Prp19 complex" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] [GO:0000151 "ubiquitin ligase
complex" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564
PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320 SMART:SM00504
GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0016607 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 InterPro:IPR000772 PROSITE:PS50231 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0000209 GO:GO:0071013 GO:GO:0000151
GO:GO:0000245 GO:GO:0034450 GeneTree:ENSGT00700000104487 KO:K10599
InterPro:IPR013915 Pfam:PF08606 HOGENOM:HOG000177308 OMA:QWQELKV
CTD:27339 HOVERGEN:HBG053697 OrthoDB:EOG4V6ZGG EMBL:CU861565
EMBL:EU417752 EMBL:AB282747 RefSeq:NP_001121929.1 UniGene:Ssc.44045
STRING:B2CCY7 Ensembl:ENSSSCT00000014327 GeneID:100144769
KEGG:ssc:100144769 Uniprot:B2CCY7
Length = 504
Score = 344 (126.2 bits), Expect = 2.9e-31, P = 2.9e-31
Identities = 67/121 (55%), Positives = 87/121 (71%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
LHSAS+PGILA+D+ DT+KILTGG D VF+K +EQ++A LKGH KKVT VV+HPS
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPS 275
Query: 292 E 292
+
Sbjct: 276 Q 276
>UNIPROTKB|Q5ZMA2 [details] [associations]
symbol:PRPF19 "Pre-mRNA-processing factor 19" species:9031
"Gallus gallus" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005819 "spindle" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SMART:SM00504 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0005819 InterPro:IPR019775 GO:GO:0003677 GO:GO:0006281
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006397
InterPro:IPR000772 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 KO:K10599 InterPro:IPR013915
Pfam:PF08606 HOGENOM:HOG000177308 CTD:27339 HOVERGEN:HBG053697
EMBL:AJ719482 IPI:IPI00598799 RefSeq:NP_001034420.1
UniGene:Gga.8361 ProteinModelPortal:Q5ZMA2 STRING:Q5ZMA2
PRIDE:Q5ZMA2 GeneID:430767 KEGG:gga:430767 NextBio:20830569
Uniprot:Q5ZMA2
Length = 505
Score = 295 (108.9 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 66/133 (49%), Positives = 85/133 (63%)
Query: 161 VPHANAIAAEAAGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNL 220
VP + A AG E G++ E+ K QDKAT+LT ERKKR + PE+L A
Sbjct: 146 VPSSQPNVA-GAGESMDLGELAGMTPEIIQKPQDKATVLTTERKKRGKTVPEELVEARGA 204
Query: 221 RAFRNVSSQA-GLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGH 279
+ S + GLHSAS+PGILA+D+ DT+KILTGG D VF+K +EQ++A LKGH
Sbjct: 205 QQVPGRSPRMWGLHSASIPGILALDLCPSDTNKILTGGADKNVIVFDKSSEQILATLKGH 264
Query: 280 RKKVTRVVYHPSE 292
KKVT VV+HPS+
Sbjct: 265 SKKVTSVVFHPSQ 277
>UNIPROTKB|H9L227 [details] [associations]
symbol:PRPF19 "Pre-mRNA-processing factor 19" species:9031
"Gallus gallus" [GO:0000209 "protein polyubiquitination"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0000974 "Prp19 complex" evidence=IEA] [GO:0001833
"inner cell mass cell proliferation" evidence=IEA] [GO:0005811
"lipid particle" evidence=IEA] [GO:0008610 "lipid biosynthetic
process" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA]
[GO:0042802 "identical protein binding" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0048711 "positive regulation of astrocyte
differentiation" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 InterPro:IPR000772
PROSITE:PS50231 GeneTree:ENSGT00700000104487 EMBL:AADN02059449
EMBL:AADN02059450 Ensembl:ENSGALT00000035741 Uniprot:H9L227
Length = 219
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 52/91 (57%), Positives = 67/91 (73%)
Query: 202 ERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVPGILAMDIQVEDTSKILTGGNDCQ 261
ERKKR + PE+L + L +R V+S GLHSAS+PGILA+D+ DT+KILTGG D
Sbjct: 2 ERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKN 61
Query: 262 ATVFNKDTEQVVAILKGHRKKVTRVVYHPSE 292
VF+K +EQ++A LKGH KKVT VV+HPS+
Sbjct: 62 VIVFDKSSEQILATLKGHSKKVTSVVFHPSQ 92
>UNIPROTKB|F5GY56 [details] [associations]
symbol:PRPF19 "Pre-mRNA-processing factor 19" species:9606
"Homo sapiens" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003613
Pfam:PF04564 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
SMART:SM00504 PROSITE:PS00678 InterPro:IPR019775 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AP003721
InterPro:IPR013915 Pfam:PF08606 EMBL:AP000777 HGNC:HGNC:17896
IPI:IPI01011381 ProteinModelPortal:F5GY56 SMR:F5GY56
Ensembl:ENST00000541371 ArrayExpress:F5GY56 Bgee:F5GY56
Uniprot:F5GY56
Length = 252
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 172 AGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAG 231
AG P E +G++ E+ KLQDKAT+LT ERKKR + PE+L + L +R V+S G
Sbjct: 156 AGEPMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVG 215
Query: 232 LHSASVPGILAMDIQVEDTSKILTGGNDCQATVFN 266
LHSAS+PGILA+D+ DT+KILTG D Q +++
Sbjct: 216 LHSASIPGILALDLCPSDTNKILTGTMDSQIKIWD 250
>WB|WBGene00020423 [details] [associations]
symbol:prp-19 species:6239 "Caenorhabditis elegans"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003613
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00504 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0005654
GO:GO:0002119 GO:GO:0008380 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0003677 GO:GO:0006281
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006397
GO:GO:0040011 GO:GO:0005681 GO:GO:0040035 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0040002 GO:GO:0000151
GeneTree:ENSGT00700000104487 InterPro:IPR013915 Pfam:PF08606
HOGENOM:HOG000177308 OMA:QWQELKV EMBL:FO081619 PIR:T16846
ProteinModelPortal:Q10051 SMR:Q10051 DIP:DIP-26296N IntAct:Q10051
MINT:MINT-214042 STRING:Q10051 PaxDb:Q10051
EnsemblMetazoa:T10F2.4.1 EnsemblMetazoa:T10F2.4.2 UCSC:T10F2.4.1
WormBase:T10F2.4 InParanoid:Q10051 NextBio:889292 Uniprot:Q10051
Length = 492
Score = 227 (85.0 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 49/132 (37%), Positives = 76/132 (57%)
Query: 162 PHANAIAAEAAGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLR 221
PH +A + ++ +Q G+SE + AKL++K+ LT ERK+R + PE L+ + L
Sbjct: 137 PHTSAKVDDDVSI-DESEDQQGLSEAILAKLEEKSKSLTAERKQRGKNLPEGLAKTEELA 195
Query: 222 AFRNVSSQAGLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRK 281
+ +S G+HS PGI A+DI+ + S LTGG D +++ + EQV+ KGH K
Sbjct: 196 ELKQTASHTGIHSTGTPGITALDIK-GNLS--LTGGIDKTVVLYDYEKEQVMQTFKGHNK 252
Query: 282 KVTRVVYHPSEL 293
K+ VV HP +
Sbjct: 253 KINAVVLHPDNI 264
>TAIR|locus:2018319 [details] [associations]
symbol:MAC3A "AT1G04510" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0080008
"Cul4-RING ubiquitin ligase complex" evidence=ISS] [GO:0042742
"defense response to bacterium" evidence=IGI] [GO:0001510 "RNA
methylation" evidence=RCA] [GO:0006094 "gluconeogenesis"
evidence=RCA] [GO:0006096 "glycolysis" evidence=RCA] [GO:0006626
"protein targeting to mitochondrion" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009651 "response to salt
stress" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046686 GO:GO:0005730
GO:GO:0008380 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0042742 eggNOG:COG2319 GO:GO:0006397 GO:GO:0045087
GO:GO:0005681 EMBL:AC000104 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 KO:K10599 InterPro:IPR013915
Pfam:PF08606 EMBL:AY039940 EMBL:AY142564 EMBL:AK221436
IPI:IPI00529251 PIR:E86177 RefSeq:NP_563708.1 UniGene:At.21449
HSSP:P32523 ProteinModelPortal:Q94BR4 SMR:Q94BR4 IntAct:Q94BR4
STRING:Q94BR4 PaxDb:Q94BR4 PRIDE:Q94BR4 DNASU:839503
EnsemblPlants:AT1G04510.1 GeneID:839503 KEGG:ath:AT1G04510
GeneFarm:3007 TAIR:At1g04510 HOGENOM:HOG000177308 InParanoid:Q94BR4
OMA:FPDANSV PhylomeDB:Q94BR4 ProtClustDB:CLSN2687671
Genevestigator:Q94BR4 Uniprot:Q94BR4
Length = 523
Score = 190 (71.9 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 45/114 (39%), Positives = 66/114 (57%)
Query: 175 PNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHS 234
PN ++GIS EV +L D L+Q+RKKR P+ L++ D L F +SS LH
Sbjct: 163 PNAKKMRLGISAEVITELTDCNAALSQQRKKRQ--IPKTLASVDALEKFTQLSSHP-LHK 219
Query: 235 ASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY 288
+ PGI +MDI + I TGG D A +F++ + Q+++ L GH KKVT + +
Sbjct: 220 TNKPGIFSMDI-LHSKDVIATGGIDTTAVLFDRPSGQILSTLTGHSKKVTSIKF 272
>TAIR|locus:2051094 [details] [associations]
symbol:MAC3B "MOS4-associated complex 3B" species:3702
"Arabidopsis thaliana" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0080008
"Cul4-RING ubiquitin ligase complex" evidence=ISS] [GO:0042742
"defense response to bacterium" evidence=IGI] [GO:0006499
"N-terminal protein myristoylation" evidence=RCA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR003613
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 SMART:SM00504 UniPathway:UPA00143 GO:GO:0005618
GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0003677
GO:GO:0042742 GO:GO:0006281 eggNOG:COG2319 GO:GO:0006397
GO:GO:0045087 GO:GO:0005681 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 EMBL:AC002332 GO:GO:0080008 KO:K10599
InterPro:IPR013915 Pfam:PF08606 HSSP:P32523 HOGENOM:HOG000177308
ProtClustDB:CLSN2687671 EMBL:FJ820118 EMBL:AY080868 IPI:IPI00529157
PIR:C84744 RefSeq:NP_850206.4 RefSeq:NP_850207.4 UniGene:At.44022
ProteinModelPortal:O22785 SMR:O22785 IntAct:O22785 STRING:O22785
PaxDb:O22785 PRIDE:O22785 EnsemblPlants:AT2G33340.1
EnsemblPlants:AT2G33340.2 GeneID:817897 KEGG:ath:AT2G33340
GeneFarm:2867 TAIR:At2g33340 InParanoid:O22785 OMA:QWQELKV
PhylomeDB:O22785 Genevestigator:O22785 Uniprot:O22785
Length = 525
Score = 181 (68.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 43/106 (40%), Positives = 62/106 (58%)
Query: 183 GISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVPGILA 242
GIS E+ +L D L+Q+RKKR P+ L++ D L F +SS LH + PGI +
Sbjct: 171 GISAEIITELTDCNAALSQKRKKRQ--IPQTLASIDTLERFTQLSSHP-LHKTNKPGICS 227
Query: 243 MDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY 288
MDI + I TGG D A +F++ + Q+++ L GH KKVT V +
Sbjct: 228 MDI-LHSKDVIATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKF 272
>UNIPROTKB|Q9AV81 [details] [associations]
symbol:PUB72 "U-box domain-containing protein 72"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005618 GO:GO:0009507
GO:GO:0046686 GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0042742 eggNOG:COG2319 EMBL:DP000086
EMBL:AP008216 EMBL:CM000147 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 KO:K10599 InterPro:IPR013915
Pfam:PF08606 HSSP:P32523 HOGENOM:HOG000177308
ProtClustDB:CLSN2687671 EMBL:AC022457 EMBL:AK064778
RefSeq:NP_001064804.1 UniGene:Os.37656 ProteinModelPortal:Q9AV81
STRING:Q9AV81 PRIDE:Q9AV81 GeneID:4348844 KEGG:dosa:Os10t0466300-01
KEGG:osa:4348844 Gramene:Q9AV81 Uniprot:Q9AV81
Length = 527
Score = 158 (60.7 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 38/110 (34%), Positives = 61/110 (55%)
Query: 183 GISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVPGILA 242
GI+ + +L + T+L+ RKKR P L++ D + + +SS LH + PGIL+
Sbjct: 170 GINPVMIDELTECNTMLSAHRKKRQ--VPPTLASIDAIERYTQISSHP-LHKTNKPGILS 226
Query: 243 MDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSE 292
MDI I TGG D A +F++ + Q++ L GH KK+T + + P +
Sbjct: 227 MDIH-PSKDIIATGGIDTNAVLFDRPSGQILCTLTGHSKKITSLKFVPRD 275
>GENEDB_PFALCIPARUM|PFC0365w [details] [associations]
symbol:PFC0365w "conserved protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016363 "nuclear matrix"
evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00504 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0016363 GO:GO:0000151
EMBL:AL844502 KO:K10599 InterPro:IPR013915 Pfam:PF08606 HSSP:P32523
HOGENOM:HOG000177308 OMA:QWQELKV PIR:T18432 RefSeq:XP_001351160.1
ProteinModelPortal:O77325 IntAct:O77325 MINT:MINT-1739970
PRIDE:O77325 EnsemblProtists:PFC0365w:mRNA GeneID:814402
KEGG:pfa:PFC0365w EuPathDB:PlasmoDB:PF3D7_0308600
ProtClustDB:CLSZ2433438 Uniprot:O77325
Length = 532
Score = 139 (54.0 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 34/123 (27%), Positives = 69/123 (56%)
Query: 179 VEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVP 238
+ +IG++EE+ K+Q+ A L RKKR +++ + + + F+N +++ +HS+++P
Sbjct: 148 IYEIGLNEELLEKMQNVAKDLLINRKKRKI---DNVCSVEQWKDFKN-TNEFNIHSSTIP 203
Query: 239 GILAMDIQV--------EDTSK--ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY 288
G+ + + V +D K +GGND + + ++++ L+GH KKV ++
Sbjct: 204 GVTCITLDVNKYKYNYNDDHMKHNFFSGGNDGNVYYVSLNDNKILSKLQGHLKKVNSIIS 263
Query: 289 HPS 291
HPS
Sbjct: 264 HPS 266
Score = 43 (20.2 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 10 DRIRHDL-EFHSGVHMDNIVSSAKN-YMEDSTELKTKVMELKGELMIDLTE 58
+ + H L ++ + + + KN Y E+ LK ++ +LK +D+ E
Sbjct: 100 NELSHSLYQYDAATRVIAKLLKEKNGYKEEIENLKKQIFQLKSSNDLDIYE 150
>UNIPROTKB|O77325 [details] [associations]
symbol:PFC0365w "PRP19-like protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016363 "nuclear
matrix" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SMART:SM00504 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0016363 GO:GO:0000151
EMBL:AL844502 KO:K10599 InterPro:IPR013915 Pfam:PF08606 HSSP:P32523
HOGENOM:HOG000177308 OMA:QWQELKV PIR:T18432 RefSeq:XP_001351160.1
ProteinModelPortal:O77325 IntAct:O77325 MINT:MINT-1739970
PRIDE:O77325 EnsemblProtists:PFC0365w:mRNA GeneID:814402
KEGG:pfa:PFC0365w EuPathDB:PlasmoDB:PF3D7_0308600
ProtClustDB:CLSZ2433438 Uniprot:O77325
Length = 532
Score = 139 (54.0 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 34/123 (27%), Positives = 69/123 (56%)
Query: 179 VEQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVP 238
+ +IG++EE+ K+Q+ A L RKKR +++ + + + F+N +++ +HS+++P
Sbjct: 148 IYEIGLNEELLEKMQNVAKDLLINRKKRKI---DNVCSVEQWKDFKN-TNEFNIHSSTIP 203
Query: 239 GILAMDIQV--------EDTSK--ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY 288
G+ + + V +D K +GGND + + ++++ L+GH KKV ++
Sbjct: 204 GVTCITLDVNKYKYNYNDDHMKHNFFSGGNDGNVYYVSLNDNKILSKLQGHLKKVNSIIS 263
Query: 289 HPS 291
HPS
Sbjct: 264 HPS 266
Score = 43 (20.2 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 10 DRIRHDL-EFHSGVHMDNIVSSAKN-YMEDSTELKTKVMELKGELMIDLTE 58
+ + H L ++ + + + KN Y E+ LK ++ +LK +D+ E
Sbjct: 100 NELSHSLYQYDAATRVIAKLLKEKNGYKEEIENLKKQIFQLKSSNDLDIYE 150
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 294 283 0.00084 115 3 11 23 0.43 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 607 (65 KB)
Total size of DFA: 187 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.18u 0.16s 26.34t Elapsed: 00:00:02
Total cpu time: 26.18u 0.16s 26.34t Elapsed: 00:00:02
Start: Thu Aug 15 10:51:43 2013 End: Thu Aug 15 10:51:45 2013