RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12461
(294 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 41/239 (17%), Positives = 67/239 (28%), Gaps = 78/239 (32%)
Query: 77 GDTGESLVQSESYMQSILGGASLCYKKRQGGSSGHSSSTGPNIGER-PALVFSG------ 129
G+ G+ + E+Y ++ ++ G + I E + F
Sbjct: 1678 GEKGKRI--RENYS-------AMIFETIVDGKL-KTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 130 -TQNVVPG------------RVNGEASNGAGVVGHELHGLRSAHVPHANAIAAEAAGTPN 176
TQ P + G A GH L G +A A+ ++ E+
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL-GEYAALASLADVMSIESL---- 1782
Query: 177 QPVEQIGISEEVQAKLQDKATILTQER-KKRSRAAPEDLSTADNLRAFRNVSSQAGLHSA 235
VE + R A P D N A
Sbjct: 1783 --VE------------------VVFYRGMTMQVAVPRDELGRSNYGMI-----------A 1811
Query: 236 SVPGILAMDIQVEDTSKIL------TGGNDCQATV-FNKDTEQVVAILKGHRKKVTRVV 287
PG +A E ++ TG + V +N + +Q VA G + + V
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWL-VEI-VNYNVENQQYVA--AGDLRALDTVT 1866
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 36.0 bits (84), Expect = 0.013
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+++ + N + + + GH K +T +
Sbjct: 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334
Score = 33.3 bits (77), Expect = 0.080
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 252 KILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+I++G +D +F + + H K V V Y+P
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200
Score = 31.8 bits (73), Expect = 0.25
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 249 DTSKILTGGNDCQAT--VFNKDTEQVVAILKGHRKKVTRVVYHP 290
++ +I G + VF DT L G + + V + P
Sbjct: 114 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 157
Score = 30.6 bits (70), Expect = 0.60
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAI-LKGHRKKVTRVVYHP 290
D + GG D + V+ V + H ++T V +
Sbjct: 459 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 501
Score = 28.7 bits (65), Expect = 2.6
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAI---LKGHRKKVTRVVYHP 290
+ + ++ + ++ +A H KV V + P
Sbjct: 502 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 546
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 36.1 bits (84), Expect = 0.014
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+I++ D + ++V+ + GH K +T + +P
Sbjct: 308 GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349
Score = 34.5 bits (80), Expect = 0.037
Identities = 6/41 (14%), Positives = 21/41 (51%)
Query: 251 SKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
++T G+D + + F+ + + + ++ ++ V ++ S
Sbjct: 220 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 260
Score = 33.7 bits (78), Expect = 0.073
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 256 GGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
G D + D+ + + GH +++ S
Sbjct: 136 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS 171
Score = 30.3 bits (69), Expect = 0.76
Identities = 5/44 (11%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVV-AILKGHRKKVTRVVYHPS 291
+ I G + +++ + +V + K+ + + P+
Sbjct: 499 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPA 542
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 35.8 bits (83), Expect = 0.014
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D ++T +D +++ T+ VA L+GH V+ V+HP
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Score = 35.8 bits (83), Expect = 0.017
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ I+ G +D + VFN +T + V + H + + HP
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP 107
Score = 30.1 bits (68), Expect = 1.0
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+LT + ++N +T+ V ++ V +
Sbjct: 24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA 65
Score = 30.1 bits (68), Expect = 1.1
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
I++G D ++N T +V L ++ + HP
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280
Score = 29.3 bits (66), Expect = 1.9
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDT-EQVVAILKGHRKKVTRVVYHPSE 292
+L+G +D ++N + + +GH V V ++P +
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 35.6 bits (82), Expect = 0.021
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D +I + G D VF +T + + +K H +V +
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 667
Score = 34.8 bits (80), Expect = 0.031
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 251 SKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
S++L+ D V+N T ++ H+ V
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095
Score = 34.0 bits (78), Expect = 0.064
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ + ++N D+ VA +GH V V++ P
Sbjct: 851 YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892
Score = 33.3 bits (76), Expect = 0.10
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ G D + +V + GH+K V + +
Sbjct: 972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1013
Score = 33.3 bits (76), Expect = 0.12
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ TG ND +++ + ++ + GH V + P
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP 753
Score = 32.9 bits (75), Expect = 0.12
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D +K + D A +++ D + LKGH V +
Sbjct: 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1137
Score = 27.5 bits (61), Expect = 7.5
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D KI+ + + + I GH + + P
Sbjct: 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 33.4 bits (77), Expect = 0.075
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
+ G+ + N T Q + GH + + +HP
Sbjct: 84 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR 126
Score = 28.8 bits (65), Expect = 2.3
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAI---LKGHRKKVTRVVYHP 290
D + +L+ D ++N T+ +VAI ++GHR +V Y
Sbjct: 127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 33.2 bits (75), Expect = 0.088
Identities = 9/80 (11%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 213 DLSTADNLRAFRNVSSQAGLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQV 272
L + + + + G ++ I +++L Q T+ + T +V
Sbjct: 64 QLKDSKTITTITTPNPRTGGEHPAI-------ISRGPCNRLLLLYPGNQITILDSKTNKV 116
Query: 273 VAILK-GHRKKVTRVVYHPS 291
+ ++ ++ + H
Sbjct: 117 LREIEVDSANEIIYMYGHNE 136
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 33.0 bits (76), Expect = 0.11
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAI--LKGHRKKVTRVVYHP 290
D ++I N+ + ++ K + V + LK H +VT V + P
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 62
Score = 28.8 bits (65), Expect = 2.5
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 251 SKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
S ++ G+DC +F D+ G +
Sbjct: 256 SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296
Score = 28.4 bits (64), Expect = 2.9
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQ----VVAILKGHRKKVTRVVYHP 290
+ K G ++ + E I K R V + +HP
Sbjct: 107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 32.6 bits (75), Expect = 0.13
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 255 TGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+A ++K E+ + ++GH + V P
Sbjct: 290 ANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP 325
Score = 30.3 bits (69), Expect = 0.78
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDT-EQVVAILKGHRKKVTRVVYHP 290
I+ G D + + ++ + V + H K ++ + + P
Sbjct: 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP 228
Score = 26.8 bits (60), Expect = 9.7
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
T +TG D +++ Q VA K V RV + P
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSP-VPVKRVEFSP 125
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 32.6 bits (75), Expect = 0.13
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
D SK+ T D A +++ + Q + + H V + + +
Sbjct: 97 DGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKA 138
Score = 30.7 bits (70), Expect = 0.60
Identities = 5/42 (11%), Positives = 18/42 (42%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ T G+D + + ++KD + + + ++ ++
Sbjct: 284 VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH 325
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 32.5 bits (75), Expect = 0.13
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 231 GLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
G+H+ V + V D ++ ND + + T V+ +GH V + P
Sbjct: 181 GIHNDVV-----RHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP 235
Score = 31.3 bits (72), Expect = 0.27
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D SK+ + D +++KD + + ++ + + V Y
Sbjct: 28 DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS 69
Score = 29.0 bits (66), Expect = 1.6
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 252 KILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
I++ G D +++K+ + ++ + V
Sbjct: 238 DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS 276
Score = 27.9 bits (63), Expect = 4.4
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 251 SKILTGGNDCQATVFNKDTEQVVAI--LKGHRKKV 283
I+ G +D +F+++ + + +KG +
Sbjct: 278 GDIIVGSSDNLVRIFSQEKSRWASEDEIKGELRSG 312
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 32.4 bits (74), Expect = 0.15
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQV---VAILKGHRKKVTRVVYHPSE 292
+++I+T D A V+ K + +L + T V + P+E
Sbjct: 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE 112
Score = 27.4 bits (61), Expect = 6.4
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQ----VVAILKGHRKKVTRVVYHP 290
+ K G +V + E + + R + + +HP
Sbjct: 111 NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 32.5 bits (75), Expect = 0.15
Identities = 1/41 (2%), Positives = 9/41 (21%)
Query: 250 TSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
++ + + L+ + + +
Sbjct: 36 FQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQ 76
Score = 28.7 bits (65), Expect = 2.6
Identities = 6/43 (13%), Positives = 8/43 (18%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
D +A + AI H S
Sbjct: 77 DIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTS 119
Score = 28.3 bits (64), Expect = 3.1
Identities = 4/79 (5%), Positives = 9/79 (11%), Gaps = 6/79 (7%)
Query: 213 DLSTADNLRAFRNVSSQAGLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFN-KDTEQ 271
L + + E + V
Sbjct: 186 VLQMRGTILPGHKWDVMV--DLFFY---RDPEEAKEQEEEEAALVAPDYGAVAEYAAPAA 240
Query: 272 VVAILKGHRKKVTRVVYHP 290
+ + P
Sbjct: 241 DTWGGEWGTDAAAQPAAIP 259
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 31.9 bits (73), Expect = 0.22
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 239 GILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
GIL++D +D +L+ G D ++N ++ + ++ + + P
Sbjct: 264 GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP 315
Score = 27.7 bits (62), Expect = 4.8
Identities = 8/49 (16%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 249 DTSKIL-TGGNDCQATVFNKDTEQVVAILK------GHRKKVTRVVYHP 290
+ + + G+ A++++ ++ V L G +++++ V +HP
Sbjct: 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.23
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 221 RAFRNVSSQAGLHSA-SVPGILAMDIQVE 248
+A + + + L++ S P LA+ +E
Sbjct: 20 QALKKLQASLKLYADDSAPA-LAIKATME 47
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 31.8 bits (73), Expect = 0.25
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+L+G D +++ T + L GH V V++H
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 348
Score = 31.0 bits (71), Expect = 0.40
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
IL+ +D V++ ++ + L H VT + +H
Sbjct: 349 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 390
Score = 30.3 bits (69), Expect = 0.82
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
S +++ D V++ +T LKGH V + +
Sbjct: 119 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Score = 29.1 bits (66), Expect = 1.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D + I + ND V+ T++ A L+ HR V + + P
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Score = 27.6 bits (62), Expect = 5.4
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ I++ D ++ T V GHR+ V V +
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Score = 27.2 bits (61), Expect = 6.8
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 255 TGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
G + + L GHR VTRV++HP
Sbjct: 84 PLGQKRDPKEWIPRPPEK-YALSGHRSPVTRVIFHP 118
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 31.6 bits (72), Expect = 0.29
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 18/69 (26%)
Query: 233 HSASVPGILAMDIQV--EDTSKILTGGNDCQATV---------FNKDTEQVVAILKGHRK 281
H+A V +DI + + I +G DC TV + V L+GH K
Sbjct: 80 HTAPV-----LDIAWCPHNDNVIASGSEDC--TVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 282 KVTRVVYHP 290
+V V +HP
Sbjct: 133 RVGIVAWHP 141
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 31.5 bits (72), Expect = 0.30
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
++I++G +D V++ T + + L GH V
Sbjct: 128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 169
Score = 28.4 bits (64), Expect = 2.9
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 252 KILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
I++G D V+N +T + + L GH V + H
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 209
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 31.5 bits (72), Expect = 0.35
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 239 GILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
G L +D++ D K + G V+ + L GH ++ + ++
Sbjct: 206 GSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND 257
Score = 29.2 bits (66), Expect = 1.8
Identities = 4/42 (9%), Positives = 13/42 (30%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+L+ +D +++ GH + + +
Sbjct: 258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG 299
Score = 28.0 bits (63), Expect = 4.2
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDT-EQVVAILKGHRKKVTRVVYHP 290
D K D Q V++ L G+R + + P
Sbjct: 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 31.3 bits (71), Expect = 0.36
Identities = 6/39 (15%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 253 ILTGGNDCQATVFN-KDTEQVVAILKGHRKKVTRVVYHP 290
+ TG D +++ ++ + + + H+ ++ +V + P
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 30.8 bits (70), Expect = 0.47
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ TG + + + D ++ K H+ KVT ++P
Sbjct: 174 SRQMLATGDSTGRLLLLGLDGHEIFK-EKLHKAKVTHAEFNP 214
Score = 30.0 bits (68), Expect = 0.84
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 246 QVEDTSKILTGGNDCQATVFNKD--TEQVVAILKGHRKKVTRVVYHPSELQ 294
+ I C F + + ++ ++VT + +HP+
Sbjct: 37 KSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPT 87
Score = 27.7 bits (62), Expect = 4.5
Identities = 4/46 (8%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 249 DTSKIL-TGGNDCQATVFNKDTEQVVAI--LKGHRKKVTRVVYHPS 291
+ G +++ D + + G +T + ++
Sbjct: 84 THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF 129
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 30.7 bits (70), Expect = 0.50
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 247 VEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+S+ + V+ + + + +LKGH K V V+
Sbjct: 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344
Score = 29.1 bits (66), Expect = 2.0
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ G + + + + IL+GHR+++ V + P
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 30.4 bits (69), Expect = 0.72
Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 14/129 (10%)
Query: 180 EQIGISEEVQAKLQDKATILTQERKKRSRAAPEDLSTADNLRAFRNVSSQAGLHSASVPG 239
+ + + + + Q + I+ + R KRSR+ E A L A + S+ G
Sbjct: 5 DDDDKAPKKRPETQKTSEIVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVG 64
Query: 240 ILAMDIQVEDTSKILTGGNDCQATVF--------------NKDTEQVVAILKGHRKKVTR 285
+ I S + T D+ +++ ++ T
Sbjct: 65 LAGPQILPPCRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATS 124
Query: 286 VVYHPSELQ 294
+ +HP+
Sbjct: 125 LAWHPTHPS 133
Score = 29.7 bits (67), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ ++TG N + N D +++ L+ H+KKVT V +P
Sbjct: 220 SSRMVVTGDNVGNVILLNMDGKEL-WNLRMHKKKVTHVALNP 260
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 30.1 bits (69), Expect = 0.83
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
I++G D ++N T+++V L+GH V HP
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289
Score = 27.8 bits (63), Expect = 4.1
Identities = 4/42 (9%), Positives = 15/42 (35%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ + + D ++ + + GH+ ++ V +
Sbjct: 34 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Score = 27.4 bits (62), Expect = 5.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 267 KDTEQVVAILKGHRKKVTRVVYHP 290
K + L GH K V+ V + P
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSP 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 29.9 bits (68), Expect = 0.87
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+++ D Q +++ L GHR VT +
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 29.9 bits (68), Expect = 0.94
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ I TGG D + +++ + ++ ++P
Sbjct: 224 NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP 265
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 29.8 bits (67), Expect = 0.94
Identities = 4/56 (7%), Positives = 12/56 (21%), Gaps = 3/56 (5%)
Query: 233 HSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVY 288
+ + L + +I G + + L + +
Sbjct: 55 YKHPL---LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI 107
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 29.7 bits (68), Expect = 1.0
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D+ + TG + + +F ++ + L K + + Y P
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 174
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 29.5 bits (67), Expect = 1.4
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
+ +++G D V++ + + IL GH ++ +Y
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 29.4 bits (67), Expect = 1.5
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
DT ++G D A +++ GH + + + P
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Score = 28.6 bits (65), Expect = 2.4
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 9/111 (8%)
Query: 186 EEVQAKLQDKATILTQERKKRSRAAPEDL-STADNLRAFRNVSSQAGL----HSASVPGI 240
E+ Q+ + Q R R A L +N+ + + H A +
Sbjct: 2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKI--- 58
Query: 241 LAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
AM D+ +L+ D + +++ T V + V Y PS
Sbjct: 59 YAMHWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Score = 28.6 bits (65), Expect = 2.6
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 251 SKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
++I+T D +++ +T Q GH V + P
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 29.1 bits (66), Expect = 1.6
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D ++ +GGND +++ + H V V + P
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 29.1 bits (66), Expect = 1.7
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
D +I++ D + V++ T + V Y PS
Sbjct: 75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Score = 28.7 bits (65), Expect = 2.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 248 EDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
E + ++GG D +A V++ + Q V + H V V Y+PS
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS 251
Score = 27.5 bits (62), Expect = 5.4
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSE 292
+ILT D +++ ++ Q++ GH V + PSE
Sbjct: 165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 29.0 bits (65), Expect = 1.9
Identities = 5/40 (12%), Positives = 14/40 (35%)
Query: 253 ILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSE 292
++ G + T++N ++ + + P E
Sbjct: 276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE 315
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 28.8 bits (65), Expect = 2.3
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPSE 292
+ + G D + T++ + + + K V +E
Sbjct: 273 TANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVTE 316
Score = 27.2 bits (61), Expect = 6.7
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 251 SKILTGGNDCQATVFNKDT----EQVVAILKGHRKKVTRVVYHPS 291
S I + D + ++ D +L V V + +
Sbjct: 229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT 273
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 27.7 bits (61), Expect = 4.6
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 248 EDTSKILTGGNDCQATVFN-KDTEQVVAILKGHRKKVTRVVYHPSEL 293
+ I+T D + + V L GH+ V+ + L
Sbjct: 208 DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYL 254
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 27.5 bits (62), Expect = 4.9
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D+ I++ GND +N + Q+ A GH + + P
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 27.6 bits (61), Expect = 5.2
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 251 SKILTGGNDCQATVFNKDTE-----QVVAILKGHRKKVTRVVYHPS 291
S + + D ++ +D E + + + + R + S
Sbjct: 220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS 265
Score = 27.2 bits (60), Expect = 7.0
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 234 SASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTE----QVVAILKGHRKKVTRVVYH 289
+ + +++ K +TGG D ++ +++ + + L+GH V V +
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
Query: 290 PSELQ 294
P+ L
Sbjct: 214 PTVLL 218
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 27.6 bits (62), Expect = 5.4
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 251 SKILTGGNDCQATVFNKDTEQ-----VVAILKGHRKKVTRVVYHPS 291
S + + D ++ +D EQ + + + R + S
Sbjct: 220 SYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS 265
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 27.4 bits (62), Expect = 6.0
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 6 DVWIDRIRHDLEFHSGVHM----DNI 27
DV + RIR L F +G+ D +
Sbjct: 287 DVEVGRIRKSLAFENGLDFFVVGDQL 312
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 27.2 bits (61), Expect = 6.4
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 30/68 (44%)
Query: 50 GELMIDLTEKDDDLESCVMSSEHNRPVGDTGESLVQSESYMQSILGGASL---CYKKRQG 106
GE MI+L+EK D++ GG +L Y RQ
Sbjct: 11 GECMIELSEKGADVKRGF---------------------------GGDTLNTSVYIARQV 43
Query: 107 GSSGHSSS 114
+ +
Sbjct: 44 DPAALTVH 51
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 27.3 bits (61), Expect = 6.5
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 251 SKILTGGNDCQATVFNKDTE-----QVVAILKGHRKKVTRVVYHPS 291
S + + D ++ +D E + + + + R + S
Sbjct: 222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS 267
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 27.1 bits (61), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 6 DVWIDRIRHDLEFHSGVHM----DNI 27
D ++ RIR DL+ G+HM DN+
Sbjct: 301 DTFVGRIRKDLDAEKGIHMWVVSDNL 326
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 27.1 bits (61), Expect = 6.9
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQ---------VVAILKGHRKKVTRVVYHPSE 292
T + T D VF +D + + H + V V ++P E
Sbjct: 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315
Score = 26.8 bits (60), Expect = 8.6
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 249 DTSKILTGGNDCQATVFNKDTE---QVVAILKGHRKKVTRVVYHP 290
+ + T D V+ D E + V++L H + V VV+HP
Sbjct: 116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 26.5 bits (58), Expect = 9.1
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 151 HELHGLRSAHVPHANAIAAEAAGTPNQPVEQIGISEEVQAKLQDKATILTQERKKRSRAA 210
+ +P A + G + Q+ +EV D L ++RK++++ +
Sbjct: 115 PPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLS--KEVGWNYADTIRELEEKRKEKAKVS 172
Query: 211 PEDLSTADNLRA 222
+ LR
Sbjct: 173 YDRRKQLAKLRV 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.356
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,171,865
Number of extensions: 239467
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 120
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.5 bits)