RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12461
(294 letters)
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 43.3 bits (100), Expect = 2e-05
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 233 HSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
S + G+ + D KI++G D +++K+T + IL GH V + Y
Sbjct: 11 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 40.5 bits (93), Expect = 2e-04
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
+L G +D V++ +L GH +V+ +
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323
Score = 31.6 bits (70), Expect = 0.10
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 254 LTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
++G D A +++ GH + + + P+
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237
Score = 25.9 bits (55), Expect = 6.8
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 271 QVVAILKGHRKKVTRVVYHPS 291
+ L+GH K+ + +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTD 66
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 39.9 bits (91), Expect = 2e-04
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 233 HSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
H SV L + + ++TG +D V++ ++ + L GH V + Y
Sbjct: 11 HMTSVITCLQFE-----DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 39.3 bits (90), Expect = 3e-04
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
IL+ +D V++ ++ + L H VT + +H +
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300
Score = 35.5 bits (80), Expect = 0.006
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
S +++ D V++ +T LKGH V + +
Sbjct: 28 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Score = 27.8 bits (60), Expect = 1.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHP 290
D + I + ND V+ T++ A L+ HR V + + P
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195
Score = 26.2 bits (56), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 276 LKGHRKKVTRVVYHPSE 292
L GHR VTRV++HP
Sbjct: 13 LSGHRSPVTRVIFHPVF 29
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 37.9 bits (86), Expect = 0.001
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 233 HSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQ--VVAILKGHRKKVTRVVYHP 290
HS V I +D ++I N+ + ++ K + V LK H +VT V + P
Sbjct: 3 HSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61
Query: 291 S 291
Sbjct: 62 D 62
Score = 26.0 bits (55), Expect = 7.3
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 231 GLHSASVPGILAMDIQVEDTSKILTGGNDCQATVFN-KDTEQVVAILK 277
LH SV I + S+ T G D ++++ + E + LK
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 37.9 bits (86), Expect = 0.001
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 233 HSASVPGILAMDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
H V L ++I++G +D V++ T + + L GH V +
Sbjct: 15 HDDHVITCLQFC-----GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 37.5 bits (85), Expect = 0.001
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
+ IL+G D ++K + + +L+GHR V V
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 33.4 bits (74), Expect = 0.027
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 249 DTSKILTGGNDCQATVFN-KDTEQVVAILKGHRKKVTRVVYHPS 291
+ + TG D +++ K +++ L H+ V +++
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 269
Score = 30.7 bits (67), Expect = 0.18
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 269 TEQVVAILKGHRKKVTRVVYHP 290
++V+ + GH K +T + +P
Sbjct: 2 HDEVLKTISGHNKGITALTVNP 23
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 33.0 bits (73), Expect = 0.037
Identities = 7/43 (16%), Positives = 9/43 (20%), Gaps = 1/43 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVVYHPS 291
KI + I H + T PS
Sbjct: 28 AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69
Score = 28.7 bits (62), Expect = 0.89
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVV 287
D +KI + D ++N T +V + + + +
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 31.1 bits (68), Expect = 0.15
Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 249 DTSKILTGGNDCQATVFNKDTEQVVAIL-KGHRKKVTRVVYHP 290
D + + + ++ T + H +T +
Sbjct: 23 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65
Score = 27.6 bits (59), Expect = 1.9
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 271 QVVAILKGHRKKVTRVVYHPS 291
+ + GH K +T +
Sbjct: 3 SIDQVRYGHNKAITALSSSAD 23
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 29.5 bits (64), Expect = 0.42
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 243 MDIQVEDTSKILTGGNDCQATVFNKDTEQVVAILKGHRKKVTRVV 287
+ D+ K T G D V++ T + V ++++
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 27.5 bits (59), Expect = 1.8
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 271 QVVAILKGHRKKVTRVVYHPS 291
Q+V I + + ++ + PS
Sbjct: 2 QIVQIEQAPKDYISDIKIIPS 22
>d1wu3i_ a.26.1.3 (I:) Interferon-beta {Mouse (Mus musculus) [TaxId:
10090]}
Length = 161
Score = 25.9 bits (57), Expect = 3.8
Identities = 6/43 (13%), Positives = 19/43 (44%)
Query: 51 ELMIDLTEKDDDLESCVMSSEHNRPVGDTGESLVQSESYMQSI 93
L+ +L ++ L++ + + R + + + +SY +
Sbjct: 82 RLLDELHQQTVFLKTVLEEKQEERLTWEMSSTALHLKSYYWRV 124
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 25.5 bits (55), Expect = 6.8
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 4/26 (15%)
Query: 6 DVWIDRIRHDLEFHSGVHM----DNI 27
V + R+R ++ D +
Sbjct: 194 SVPVGRLRKMAMGDDFLNAFTVGDQL 219
>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 24.9 bits (54), Expect = 7.2
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 264 VFNKDTEQVVAILKGHRKKVTRVVYHPSELQ 294
+ + V L+ K VV P ++Q
Sbjct: 70 MEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQ 100
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 25.3 bits (55), Expect = 7.8
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 223 FRNVSSQAGLHSASVPGILAMDIQVEDTSKILTGGND 259
FR S++G+H V GI S +L GG +
Sbjct: 33 FRVQVSESGVHRPHVAGIHGRSNDGA-YSLVLAGGYE 68
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 25.4 bits (55), Expect = 9.1
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 188 VQAKLQDKATILTQ-ERKKRSRAAPEDLSTADNLRAFRNVSSQAGL 232
++ L +L + RK+ S AP L ++ +F+ + GL
Sbjct: 1 MRPDLSRVPGVLGEIARKRASEVAPYPLPEPPSVPSFKEALLRPGL 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.356
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 972,437
Number of extensions: 40434
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 29
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.1 bits)