BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12464
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens
GN=TMTC4 PE=2 SV=2
Length = 741
Score = 79.0 bits (193), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 16 GIKKTFLIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCMLLS 64
G K+ L GLGFL++PFLPASNLFF VGFV+AERVLY+PS+G+C+LL+
Sbjct: 378 GHKRRILTLGLGFLVIPFLPASNLFFRVGFVVAERVLYLPSVGYCVLLT 426
>sp|Q8BG19|TMTC4_MOUSE Transmembrane and TPR repeat-containing protein 4 OS=Mus musculus
GN=Tmtc4 PE=2 SV=1
Length = 741
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 7 VFTSLQISVGIKKTFLIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCMLLS 64
+F +L K+ L GLGFL++PFLPASNLFF VGFV+AERVLY+PS G+C+LL+
Sbjct: 369 IFQALCSEDSCKRRILTLGLGFLVIPFLPASNLFFRVGFVVAERVLYLPSAGYCVLLT 426
>sp|Q7K4B6|TMTC3_DROME Transmembrane and TPR repeat-containing protein CG4050
OS=Drosophila melanogaster GN=CG4050 PE=2 SV=1
Length = 926
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/43 (69%), Positives = 41/43 (95%)
Query: 22 LIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCMLLS 64
LI LG++++PFLPASNLFFPVGFV+AER+LY+PSMG+C+L++
Sbjct: 414 LIMCLGWMVLPFLPASNLFFPVGFVVAERILYMPSMGYCLLVA 456
>sp|Q6DCD5|TMTC2_XENLA Transmembrane and TPR repeat-containing protein 2 OS=Xenopus laevis
GN=tmtc2 PE=2 SV=1
Length = 836
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/46 (69%), Positives = 39/46 (84%)
Query: 19 KTFLIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCMLLS 64
+ ++ L LIVPF+PASNLFF VGFVIAERVLYIPSMGFC+L++
Sbjct: 391 ENIVVLALSLLIVPFVPASNLFFYVGFVIAERVLYIPSMGFCLLVT 436
>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens
GN=TMTC1 PE=1 SV=3
Length = 882
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/47 (70%), Positives = 40/47 (85%), Gaps = 4/47 (8%)
Query: 25 GLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCML----LSKVC 67
GL FL+ PF+PASNLFF VGFV+AERVLY+PSMG+C+L LSK+C
Sbjct: 386 GLLFLVFPFIPASNLFFRVGFVVAERVLYMPSMGYCILFVHGLSKLC 432
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/50 (66%), Positives = 42/50 (84%), Gaps = 4/50 (8%)
Query: 22 LIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCML----LSKVC 67
++ GL FL+ PF+PASNLFF VGFV+AERVLY+PSMG+C+L LSK+C
Sbjct: 443 VLAGLLFLVFPFIPASNLFFRVGFVVAERVLYMPSMGYCILFVHGLSKLC 492
>sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing protein 2 OS=Mus musculus
GN=Tmtc2 PE=2 SV=1
Length = 836
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 39/46 (84%)
Query: 19 KTFLIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCMLLS 64
+ +I L LI+PF+PA+NLFF VGFVIAERVLYIPSMGFC+L++
Sbjct: 391 ENIVILSLSLLIIPFIPATNLFFYVGFVIAERVLYIPSMGFCLLIT 436
>sp|Q8N394|TMTC2_HUMAN Transmembrane and TPR repeat-containing protein 2 OS=Homo sapiens
GN=TMTC2 PE=2 SV=1
Length = 836
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 39/46 (84%)
Query: 19 KTFLIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCMLLS 64
+ ++ L LI+PF+PA+NLFF VGFVIAERVLYIPSMGFC+L++
Sbjct: 391 ENIVVLSLSLLIIPFVPATNLFFYVGFVIAERVLYIPSMGFCLLIT 436
>sp|Q6ZXV5|TMTC3_HUMAN Transmembrane and TPR repeat-containing protein 3 OS=Homo sapiens
GN=TMTC3 PE=1 SV=2
Length = 915
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/60 (60%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 5 LPVFTSLQISVGIKKTFLIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCMLLS 64
L VF S++ S KT L+ L + +PF+PASNLFFPVGFV+AERVLY+PSMGFC+L++
Sbjct: 333 LGVF-SIRYSGDSSKTVLM-ALCLMALPFIPASNLFFPVGFVVAERVLYVPSMGFCILVA 390
>sp|Q8BRH0|TMTC3_MOUSE Transmembrane and TPR repeat-containing protein 3 OS=Mus musculus
GN=Tmtc3 PE=2 SV=2
Length = 920
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
Query: 19 KTFLIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCMLLS 64
KT L+ L + +PF+PASNLFFPVGFV+AERVLY+PSMGFC+L++
Sbjct: 351 KTVLM-ALCLMALPFIPASNLFFPVGFVVAERVLYVPSMGFCILVA 395
>sp|Q9V3X5|TMTC2_DROME Transmembrane and TPR repeat-containing protein CG4341
OS=Drosophila melanogaster GN=CG4341 PE=2 SV=1
Length = 938
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/42 (69%), Positives = 36/42 (85%)
Query: 22 LIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCMLL 63
LI L FL +PFLPASNL F VGFV+AER+LY+PS+GFC+L+
Sbjct: 505 LIMSLSFLALPFLPASNLLFYVGFVVAERLLYLPSVGFCLLV 546
>sp|Q9VQE9|TMTC1_DROME Transmembrane and TPR repeat-containing protein CG31690
OS=Drosophila melanogaster GN=CG31690 PE=2 SV=3
Length = 859
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/41 (68%), Positives = 35/41 (85%)
Query: 23 IEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCMLL 63
I G FL++PFLPASNL F VGFV+AERVLY+PS+G+C+L
Sbjct: 419 ILGTAFLVLPFLPASNLLFYVGFVMAERVLYLPSVGYCLLF 459
>sp|Q20144|TMTC1_CAEEL Transmembrane and TPR repeat-containing protein F38B6.6
OS=Caenorhabditis elegans GN=F38B6.6 PE=3 SV=2
Length = 690
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
Query: 6 PVFTSLQISVGIK-----KTFLIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFC 60
PV + +G+K + F + L I+ FLPASN+FF VGF IAERVLY+PS GFC
Sbjct: 317 PVLIFTIVIIGVKFQNECRAFTLSSL-MGIISFLPASNIFFTVGFSIAERVLYLPSAGFC 375
Query: 61 ML 62
+L
Sbjct: 376 LL 377
>sp|Q9VF81|TMTC4_DROME Transmembrane and TPR repeat-containing protein CG5038
OS=Drosophila melanogaster GN=CG5038 PE=1 SV=1
Length = 705
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/41 (63%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
Query: 22 LIEGLGFLIVPFLPASNLFFPVGFVIAERVLYIPSMGFCML 62
++ LG +IVPFLPAS + VGFVIAER LY+PS+GFC+L
Sbjct: 343 MMLALGLMIVPFLPASGIIC-VGFVIAERTLYVPSIGFCLL 382
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.334 0.151 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,781,799
Number of Sequences: 539616
Number of extensions: 686515
Number of successful extensions: 2080
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2065
Number of HSP's gapped (non-prelim): 14
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)