Query psy12464
Match_columns 67
No_of_seqs 101 out of 171
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 20:00:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4040 Predicted membrane pro 71.9 2.4 5.2E-05 27.5 1.3 18 45-62 23-40 (85)
2 PF09586 YfhO: Bacterial membr 54.4 8.1 0.00018 31.2 1.6 39 27-65 314-355 (843)
3 PF07264 EI24: Etoposide-induc 47.1 10 0.00023 25.4 1.1 28 16-43 192-219 (219)
4 PRK12768 CysZ-like protein; Re 37.6 10 0.00022 27.8 -0.2 27 18-44 189-215 (240)
5 PF05529 Bap31: B-cell recepto 36.2 25 0.00053 23.9 1.6 17 47-65 99-115 (192)
6 PF09882 DUF2109: Predicted me 34.9 25 0.00053 22.5 1.3 16 47-62 23-38 (78)
7 KOG2085|consensus 20.3 34 0.00074 28.0 0.0 11 44-54 354-364 (457)
8 PF13862 BCIP: p21-C-terminal 19.5 38 0.00083 23.7 0.1 16 41-56 112-127 (194)
9 PLN00122 serine/threonine prot 18.5 48 0.001 23.4 0.4 8 47-54 68-75 (170)
10 PF10397 ADSL_C: Adenylosuccin 15.5 65 0.0014 19.2 0.4 9 44-52 2-10 (81)
No 1
>COG4040 Predicted membrane protein [Function unknown]
Probab=71.94 E-value=2.4 Score=27.50 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.3
Q ss_pred eehhhhhhhhhhHHHHHh
Q psy12464 45 FVIAERVLYIPSMGFCML 62 (67)
Q Consensus 45 fviAERvLYlPSvGfcll 62 (67)
.--|||.||+..++||+-
T Consensus 23 rdra~~lLYLn~~sFgis 40 (85)
T COG4040 23 RDRAAQLLYLNVVSFGIS 40 (85)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345899999999999984
No 2
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=54.40 E-value=8.1 Score=31.16 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=30.3
Q ss_pred HHhhhccccccccccchheehh---hhhhhhhhHHHHHhHhh
Q psy12464 27 GFLIVPFLPASNLFFPVGFVIA---ERVLYIPSMGFCMLLSK 65 (67)
Q Consensus 27 ~~~~ipflPaSNl~~~vGfviA---ERvLYlPSvGfcll~a~ 65 (67)
.+++.-++|..|.++..+.... .|+.|+.+.-.+++.+.
T Consensus 314 ~~~l~~~~p~~~~i~~gf~~p~~~~~R~~fi~~f~~~~~~~~ 355 (843)
T PF09586_consen 314 LLLLSFFIPPLNSIWNGFSYPNGFPYRWSFIFIFLISLLAAR 355 (843)
T ss_pred HHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 4444456888899888777777 99999998888877764
No 3
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=47.14 E-value=10 Score=25.37 Aligned_cols=28 Identities=39% Similarity=0.658 Sum_probs=21.7
Q ss_pred ccchhhHHHHHHHhhhccccccccccch
Q psy12464 16 GIKKTFLIEGLGFLIVPFLPASNLFFPV 43 (67)
Q Consensus 16 ~~~~~~~~~~l~~~~ipflPaSNl~~~v 43 (67)
+++.....+|+......++|.-|+++|+
T Consensus 192 ~~~~~~~gfG~~~~ll~~IP~~~l~~P~ 219 (219)
T PF07264_consen 192 RNRGYFLGFGLPFALLLLIPLVNLFFPF 219 (219)
T ss_dssp CTHHHHHHHHHHHHHHTTSCCHHCTHH-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445567788889999999999998864
No 4
>PRK12768 CysZ-like protein; Reviewed
Probab=37.60 E-value=10 Score=27.76 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.3
Q ss_pred chhhHHHHHHHhhhccccccccccchh
Q psy12464 18 KKTFLIEGLGFLIVPFLPASNLFFPVG 44 (67)
Q Consensus 18 ~~~~~~~~l~~~~ipflPaSNl~~~vG 44 (67)
+.+...+|.......++|.-|++.|+=
T Consensus 189 r~~~~~fG~~~all~~IP~vNL~~Pv~ 215 (240)
T PRK12768 189 ATTVFLAGLVIAAFVAIPIVNLLTPLF 215 (240)
T ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345677899999999999999988763
No 5
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.18 E-value=25 Score=23.94 Aligned_cols=17 Identities=47% Similarity=0.792 Sum_probs=13.5
Q ss_pred hhhhhhhhhhHHHHHhHhh
Q psy12464 47 IAERVLYIPSMGFCMLLSK 65 (67)
Q Consensus 47 iAERvLYlPSvGfcll~a~ 65 (67)
=|||-+|+ .||++.+.+
T Consensus 99 raQRN~YI--sGf~LfL~l 115 (192)
T PF05529_consen 99 RAQRNMYI--SGFALFLSL 115 (192)
T ss_pred HHHHhHHH--HHHHHHHHH
Confidence 58999999 688887654
No 6
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=34.89 E-value=25 Score=22.53 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=13.7
Q ss_pred hhhhhhhhhhHHHHHh
Q psy12464 47 IAERVLYIPSMGFCML 62 (67)
Q Consensus 47 iAERvLYlPSvGfcll 62 (67)
-+++.+|+-.+|||+-
T Consensus 23 r~~KL~yLnv~~F~ia 38 (78)
T PF09882_consen 23 RARKLLYLNVINFAIA 38 (78)
T ss_pred HHHhhhHHHHHHHHHH
Confidence 3688999999999984
No 7
>KOG2085|consensus
Probab=20.31 E-value=34 Score=27.99 Aligned_cols=11 Identities=55% Similarity=0.987 Sum_probs=8.6
Q ss_pred heehhhhhhhh
Q psy12464 44 GFVIAERVLYI 54 (67)
Q Consensus 44 GfviAERvLYl 54 (67)
=|.+|||.||+
T Consensus 354 HFQVAEraL~~ 364 (457)
T KOG2085|consen 354 HFQVAERALYL 364 (457)
T ss_pred hHHHHHHHHHH
Confidence 36788888886
No 8
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=19.55 E-value=38 Score=23.71 Aligned_cols=16 Identities=44% Similarity=0.731 Sum_probs=14.3
Q ss_pred cchheehhhhhhhhhh
Q psy12464 41 FPVGFVIAERVLYIPS 56 (67)
Q Consensus 41 ~~vGfviAERvLYlPS 56 (67)
-.+|.++.||++=+|.
T Consensus 112 ~~vGLlinER~iN~P~ 127 (194)
T PF13862_consen 112 KNVGLLINERFINIPP 127 (194)
T ss_pred CCeEEEEehhhhcCCH
Confidence 4689999999999996
No 9
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=18.48 E-value=48 Score=23.39 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=7.3
Q ss_pred hhhhhhhh
Q psy12464 47 IAERVLYI 54 (67)
Q Consensus 47 iAERvLYl 54 (67)
+|||-||+
T Consensus 68 VAERAL~l 75 (170)
T PLN00122 68 VAERALFL 75 (170)
T ss_pred HHHHHHHH
Confidence 99999986
No 10
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=15.48 E-value=65 Score=19.17 Aligned_cols=9 Identities=44% Similarity=1.047 Sum_probs=0.0
Q ss_pred heehhhhhh
Q psy12464 44 GFVIAERVL 52 (67)
Q Consensus 44 GfviAERvL 52 (67)
|++++||++
T Consensus 2 Gli~SE~v~ 10 (81)
T PF10397_consen 2 GLIFSERVM 10 (81)
T ss_dssp TGGGHHHHH
T ss_pred cchHHHHHH
Done!