Query psy12464
Match_columns 67
No_of_seqs 101 out of 171
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 20:01:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4en6_A Hemagglutinin component 51.5 0.63 2.1E-05 33.5 -3.6 17 44-60 153-169 (224)
2 3tx3_A Uncharacterized protein 31.0 19 0.00064 25.2 1.3 31 16-46 202-232 (249)
3 4en6_B Hemagglutinin component 25.7 3.4 0.00011 31.8 -3.5 18 44-61 118-135 (420)
4 3agc_A RED chlorophyll catabol 22.8 15 0.00051 26.9 -0.4 20 34-53 248-267 (276)
5 3iq1_A DPS family protein; csg 17.7 33 0.0011 21.6 0.4 9 46-54 69-77 (159)
6 3kwo_A Putative bacterioferrit 17.2 34 0.0012 21.4 0.4 9 46-54 56-64 (152)
7 2pyb_A NAPA, neutrophil activa 16.7 36 0.0012 21.2 0.4 9 46-54 56-64 (151)
8 2bk6_A Non-heme iron-containin 16.5 36 0.0012 21.3 0.4 9 46-54 59-67 (156)
9 2chp_A MRGA, metalloregulation 16.3 37 0.0013 21.2 0.4 9 46-54 63-71 (153)
10 2fjc_A Antigen TPF1; mini ferr 16.0 38 0.0013 21.2 0.4 9 46-54 64-72 (156)
No 1
>4en6_A Hemagglutinin components HA-22/23/53; carbohydrate/sugar binding, sugar binding protein; HET: SIA GAL BGC; 2.56A {Clostridium botulinum} PDB: 4en7_A* 4en8_A* 4en9_A* 2z5a_A 2zoe_A* 2zs6_A
Probab=51.50 E-value=0.63 Score=33.49 Aligned_cols=17 Identities=41% Similarity=0.850 Sum_probs=12.7
Q ss_pred heehhhhhhhhhhHHHH
Q psy12464 44 GFVIAERVLYIPSMGFC 60 (67)
Q Consensus 44 GfviAERvLYlPSvGfc 60 (67)
|.+.-.-++|+||.|+|
T Consensus 153 g~I~e~A~~YvPSLGy~ 169 (224)
T 4en6_A 153 NTVTERAVLYVPSLGYV 169 (224)
T ss_dssp SBEEEEEEEEEEEEEEE
T ss_pred CccccceeEEccccceE
Confidence 44445558999999987
No 2
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=31.03 E-value=19 Score=25.19 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=23.5
Q ss_pred ccchhhHHHHHHHhhhccccccccccchhee
Q psy12464 16 GIKKTFLIEGLGFLIVPFLPASNLFFPVGFV 46 (67)
Q Consensus 16 ~~~~~~~~~~l~~~~ipflPaSNl~~~vGfv 46 (67)
+++.....+|........+|.-|+++....+
T Consensus 202 ~~r~~~~~fG~~~~ll~~IP~vnl~~~p~av 232 (249)
T 3tx3_A 202 QQRSKTLGFGFGVTVLTMIPLINLIIMPLAV 232 (249)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567788999999999999998765544
No 3
>4en6_B Hemagglutinin components HA-22/23/53; carbohydrate/sugar binding, sugar binding protein; HET: SIA GAL BGC; 2.56A {Clostridium botulinum} PDB: 2zoe_B* 2zs6_B 2z5a_B* 4en7_B* 4en8_B* 4en9_B*
Probab=25.73 E-value=3.4 Score=31.78 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=12.4
Q ss_pred heehhhhhhhhhhHHHHH
Q psy12464 44 GFVIAERVLYIPSMGFCM 61 (67)
Q Consensus 44 GfviAERvLYlPSvGfcl 61 (67)
|.+.-+-.+|+||.|+|=
T Consensus 118 gnI~drA~~YlPSLG~~e 135 (420)
T 4en6_B 118 GNIDDKAEYYLPSLGKCE 135 (420)
T ss_dssp SCEEEEEEEEEECCCEEE
T ss_pred CccccceeEEccccccee
Confidence 333334579999999883
No 4
>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A
Probab=22.77 E-value=15 Score=26.93 Aligned_cols=20 Identities=15% Similarity=-0.038 Sum_probs=17.9
Q ss_pred ccccccccchheehhhhhhh
Q psy12464 34 LPASNLFFPVGFVIAERVLY 53 (67)
Q Consensus 34 lPaSNl~~~vGfviAERvLY 53 (67)
=|++|++-..|--+|||+++
T Consensus 248 Dpa~~l~r~FG~E~sdr~l~ 267 (276)
T 3agc_A 248 DLDLQFPRMFGEEVSSRVVH 267 (276)
T ss_dssp HTTTTHHHHHCHHHHHHHHH
T ss_pred CchhchHhhhCHHHHHHHHH
Confidence 48999999999999999985
No 5
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=17.68 E-value=33 Score=21.63 Aligned_cols=9 Identities=44% Similarity=0.726 Sum_probs=6.6
Q ss_pred ehhhhhhhh
Q psy12464 46 VIAERVLYI 54 (67)
Q Consensus 46 viAERvLYl 54 (67)
-+|||++.+
T Consensus 69 ~lAERI~~L 77 (159)
T 3iq1_A 69 ELAERILTL 77 (159)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 478888765
No 6
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=17.18 E-value=34 Score=21.37 Aligned_cols=9 Identities=56% Similarity=0.634 Sum_probs=6.8
Q ss_pred ehhhhhhhh
Q psy12464 46 VIAERVLYI 54 (67)
Q Consensus 46 viAERvLYl 54 (67)
-+|||++.+
T Consensus 56 ~iAERI~~L 64 (152)
T 3kwo_A 56 SCAERVLQL 64 (152)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 478888875
No 7
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi}
Probab=16.66 E-value=36 Score=21.19 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=6.5
Q ss_pred ehhhhhhhh
Q psy12464 46 VIAERVLYI 54 (67)
Q Consensus 46 viAERvLYl 54 (67)
-+|||++.+
T Consensus 56 ~lAERI~~L 64 (151)
T 2pyb_A 56 IVAERSRML 64 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 478888765
No 8
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=16.48 E-value=36 Score=21.27 Aligned_cols=9 Identities=56% Similarity=0.722 Sum_probs=6.6
Q ss_pred ehhhhhhhh
Q psy12464 46 VIAERVLYI 54 (67)
Q Consensus 46 viAERvLYl 54 (67)
.+|||++++
T Consensus 59 ~lAERI~~L 67 (156)
T 2bk6_A 59 EVAERLLAI 67 (156)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 478888875
No 9
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=16.26 E-value=37 Score=21.22 Aligned_cols=9 Identities=67% Similarity=0.826 Sum_probs=6.5
Q ss_pred ehhhhhhhh
Q psy12464 46 VIAERVLYI 54 (67)
Q Consensus 46 viAERvLYl 54 (67)
-+|||++.+
T Consensus 63 ~lAERI~~L 71 (153)
T 2chp_A 63 TIAERLLAI 71 (153)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 478888765
No 10
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=16.03 E-value=38 Score=21.25 Aligned_cols=9 Identities=56% Similarity=0.800 Sum_probs=6.4
Q ss_pred ehhhhhhhh
Q psy12464 46 VIAERVLYI 54 (67)
Q Consensus 46 viAERvLYl 54 (67)
-+|||++.+
T Consensus 64 ~lAERI~~L 72 (156)
T 2fjc_A 64 TIAERLLQL 72 (156)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 468888765
Done!