RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12464
         (67 letters)



>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
           [Inorganic ion transport and metabolism].
          Length = 681

 Score = 23.8 bits (52), Expect = 9.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 18  KKTFLIEGLGFLIVPFL 34
           ++  LI GLG LIVPF+
Sbjct: 650 RRNLLIYGLGGLIVPFI 666


>gnl|CDD|145503 pfam02392, Ycf4, Ycf4.  This family consists of hypothetical Ycf4
          proteins from various chloroplast genomes. It has been
          suggested that Ycf4 is involved in the assembly and/or
          stability of the photosystem I complex in chloroplasts.
          Length = 180

 Score = 23.6 bits (52), Expect = 9.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 12/38 (31%)

Query: 22 LIEGLGFLIV-----------PFLPASNL-FFPVGFVI 47
          L+ GLGFL+V           PFL  S + F P G V+
Sbjct: 26 LLGGLGFLLVGISSYLGKNLLPFLDPSQIIFIPQGLVM 63


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.334    0.151    0.460 

Gapped
Lambda     K      H
   0.267   0.0784    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,460,188
Number of extensions: 273809
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 17
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 53 (24.1 bits)