RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12464
         (67 letters)



>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate
           reduction, oxidored sulfite reduction; HET: SRM; 1.76A
           {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
          Length = 386

 Score = 24.6 bits (54), Expect = 2.9
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 13  ISVGIKKTFLIEG--LGFLIVPFLPA 36
           I VG K +  I+      ++V F+P 
Sbjct: 283 IMVGGKISNRIKVPSFSKVVVAFVPN 308


>1v9c_A Precorrin-8X methyl mutase; alpha-beta WIND, doubly wound sheet,
           riken structural genomics/proteomics initiative, RSGI,
           structural genomics; 2.20A {Thermus thermophilus} SCOP:
           c.23.17.1
          Length = 218

 Score = 24.6 bits (53), Expect = 3.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 13  ISVGIKKTFLIEGLGFLIVPFLPASNLFFPVGFVIAE 49
           + VG   TFL+  +  +     PA  L  PVGFV   
Sbjct: 131 VGVGNAPTFLLALVEAIRQGARPALVLGMPVGFVNVL 167


>3mm5_B Sulfite reductase, dissimilatory-type subunit BET;
           alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
           {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B*
           3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
          Length = 366

 Score = 24.2 bits (53), Expect = 4.0
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 13  ISVGIKKTFLIEG--LGFLIVPFLPA 36
           I VG K +       L  ++VP++P 
Sbjct: 266 IMVGGKLSEARRMPELSKVVVPWVPN 291


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.334    0.151    0.460 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 977,004
Number of extensions: 45037
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 4
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 51 (23.5 bits)