BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12465
         (434 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NST|A Chain A, The Sulfotransferase Domain Of Human Haparin Sulfate N-
           DeacetylaseN-Sulfotransferase
          Length = 325

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 53/66 (80%)

Query: 336 LSSAPPMRIAEKYFQLYPEEQDPIWGNPCLDNRHVKIWSHNKSCDQLPRFLVIGPQKTGT 395
           L + PP+++A+KYFQ++ EE+DP+W +PC D RH  IWS  K+CD+ P+ L+IGPQKTGT
Sbjct: 1   LQTLPPVQLAQKYFQIFSEEKDPLWQDPCEDKRHKDIWSKEKTCDRFPKLLIIGPQKTGT 60

Query: 396 TALYTF 401
           TALY F
Sbjct: 61  TALYLF 66


>pdb|3SK3|A Chain A, Crystal Structure Of Salmonella Typhimurium Acetate Kinase
           (Acka) With Citrate Bound At The Dimeric Interface
 pdb|3SK3|B Chain B, Crystal Structure Of Salmonella Typhimurium Acetate Kinase
           (Acka) With Citrate Bound At The Dimeric Interface
 pdb|3SLC|A Chain A, Crystal Structure Of Apo Form Of Acetate Kinase (Acka)
           From Salmonella Typhimurium
 pdb|3SLC|B Chain B, Crystal Structure Of Apo Form Of Acetate Kinase (Acka)
           From Salmonella Typhimurium
 pdb|3SLC|C Chain C, Crystal Structure Of Apo Form Of Acetate Kinase (Acka)
           From Salmonella Typhimurium
 pdb|3SLC|D Chain D, Crystal Structure Of Apo Form Of Acetate Kinase (Acka)
           From Salmonella Typhimurium
          Length = 415

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 276 HQQPHLYENQTQLEVDMMLNKQFAKINIFMSHMGNYGN 313
           H   H Y  Q   E   MLNK   ++NI   H+GN G+
Sbjct: 197 HGTSHFYVTQ---EAAKMLNKPVEELNIITCHLGNGGS 231


>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From
           Pisum Sativum
 pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e From
           Pisum Sativum
 pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e From
           Pisum Sativum
 pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e From
           Pisum Sativum
 pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e From
           Pisum Sativum
 pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e From
           Pisum Sativum
 pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From
           Pisum Sativum
 pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e From
           Pisum Sativum
          Length = 178

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 12/89 (13%)

Query: 279 PHLYENQTQLEVDMMLNKQFAKINIFMSHMGNYGNDRLALYTFESVIKFITCWTNLHLSS 338
           PHL EN      D    K         S    +G+    +YTF +V +F + + N+H   
Sbjct: 2   PHLLENSWTFWFDTPAAK---------SKQAAWGSSMRPIYTFSTVEEFWSIYNNIH--- 49

Query: 339 APPMRIAEKYFQLYPEEQDPIWGNPCLDN 367
            P        F  +  + +P W +P   N
Sbjct: 50  HPGKLAVGADFYCFKHKIEPKWEDPICAN 78


>pdb|2CKI|A Chain A, Structure Of Ulilysin, A Member Of The Pappalysin Family
           Of Metzincin Metalloendopeptidases.
 pdb|2CKI|B Chain B, Structure Of Ulilysin, A Member Of The Pappalysin Family
           Of Metzincin Metalloendopeptidases
          Length = 262

 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 274 WNHQQPHLYENQTQLEVDMMLNKQFAKINIFMSHM 308
           WN ++ ++ + Q Q ++D +LNK F K+N  +S +
Sbjct: 15  WNEEEENISDAQIQSQID-ILNKDFRKLNSDVSQV 48


>pdb|3LUN|A Chain A, Structure Of Ulilysin Mutant M290c
 pdb|3LUN|B Chain B, Structure Of Ulilysin Mutant M290c
          Length = 262

 Score = 28.1 bits (61), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 274 WNHQQPHLYENQTQLEVDMMLNKQFAKINIFMSHM 308
           WN ++ ++ + Q Q ++D +LNK F K+N  +S +
Sbjct: 15  WNEEEENISDAQIQSQID-ILNKDFRKLNSDVSQV 48


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,172,372
Number of Sequences: 62578
Number of extensions: 578856
Number of successful extensions: 1225
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 17
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)