Query psy12465
Match_columns 434
No_of_seqs 209 out of 322
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 20:01:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3703|consensus 100.0 4E-185 1E-189 1421.0 25.8 426 1-428 99-641 (873)
2 PF12062 HSNSD: heparan sulfat 100.0 4E-128 9E-133 986.3 22.2 369 1-384 81-463 (487)
3 PF12062 HSNSD: heparan sulfat 99.2 1.8E-12 3.9E-17 135.2 0.0 180 17-221 50-242 (487)
4 KOG3703|consensus 99.2 8.6E-12 1.9E-16 132.3 2.4 70 145-221 192-261 (873)
5 KOG3704|consensus 98.1 1.7E-06 3.7E-11 86.6 3.1 44 377-420 102-145 (360)
6 KOG3988|consensus 77.8 1.9 4.1E-05 44.5 3.0 32 380-411 68-99 (378)
7 PLN02164 sulfotransferase 50.9 12 0.00026 38.8 2.7 22 381-402 78-99 (346)
8 COG4874 Uncharacterized protei 48.3 15 0.00031 37.5 2.7 51 30-88 151-204 (318)
9 PRK05339 PEP synthetase regula 43.3 23 0.0005 35.9 3.3 79 321-410 90-170 (269)
10 KOG1584|consensus 42.9 19 0.00042 37.0 2.7 20 383-402 40-59 (297)
11 PF15436 PGBA_N: Plasminogen-b 39.0 24 0.00053 34.8 2.6 31 44-74 133-163 (218)
12 PRK00454 engB GTP-binding prot 37.3 51 0.0011 29.3 4.2 28 378-405 20-47 (196)
13 PF04666 Glyco_transf_54: N-Ac 35.8 29 0.00062 35.5 2.7 57 187-250 164-221 (297)
14 PF06283 ThuA: Trehalose utili 33.9 59 0.0013 30.5 4.2 56 7-65 33-88 (217)
15 PF06297 PET: PET Domain; Int 33.0 34 0.00074 30.3 2.3 32 334-365 19-53 (106)
16 smart00614 ZnF_BED BED zinc fi 31.8 44 0.00096 24.9 2.5 19 389-407 30-49 (50)
17 cd04154 Arl2 Arl2 subfamily. 29.1 52 0.0011 29.0 2.8 29 377-405 9-37 (173)
18 TIGR03598 GTPase_YsxC ribosome 28.8 84 0.0018 28.1 4.2 28 378-405 14-41 (179)
19 PF08477 Miro: Miro-like prote 28.0 62 0.0013 26.4 2.9 24 385-408 2-25 (119)
20 PF03618 Kinase-PPPase: Kinase 26.5 50 0.0011 33.3 2.5 60 344-413 109-168 (255)
21 KOG3347|consensus 25.1 64 0.0014 31.0 2.8 40 380-419 5-49 (176)
22 PTZ00040 translation initiatio 23.9 39 0.00085 33.6 1.3 54 310-367 60-129 (233)
23 PTZ00106 60S ribosomal protein 22.1 77 0.0017 27.8 2.6 42 18-64 32-73 (108)
24 PRK12678 transcription termina 21.6 1E+02 0.0022 35.2 3.9 56 352-410 388-449 (672)
No 1
>KOG3703|consensus
Probab=100.00 E-value=4.5e-185 Score=1420.98 Aligned_cols=426 Identities=49% Similarity=0.908 Sum_probs=417.8
Q ss_pred CCCcceeEEEEEe-cC-CCCccccCCCCcEEEEEEechhhhhCCcHHHHHHHHHhhhhcCceEEEEeCCCCCCCCCCccC
Q psy12465 1 MPFLLERYKIEVS-GK-SLPVMTNQDKGKYGVIVFENVAKYLEMDKWNRELLDKYCREYSVGIVAFFPPTETPRFDEPVR 78 (434)
Q Consensus 1 ~~~~~f~y~~e~~-~k-~lP~Lt~~~kgry~~IIfEn~~kY~nm~~wnr~lLdkYC~ey~Vgiigf~~~~e~~~~~~~l~ 78 (434)
++++||+||+|+| || |||+|||++||||+||||||++||+|||+||||||||||+|||||||||++++||+++++|+|
T Consensus 99 Lessrfqy~~eiapgkgdlPvLtd~~kGry~liIyEN~~KYvnmd~WnReLLdkYCveY~VgiigF~~~~e~slls~qlk 178 (873)
T KOG3703|consen 99 LESSRFQYKIEIAPGKGDLPVLTDNGKGRYSLIIYENILKYVNMDAWNRELLDKYCVEYGVGIIGFFSASENSLLSAQLK 178 (873)
T ss_pred HHhccceEEEEeccCCCCCceeeeCCCccEEEEEehHHHHHhCHHHHHHHHHHHHHHHhCCceEEEecCCccchhheeec
Confidence 4789999999999 99 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEeccccccccccCCCCCeeeeecCCCcccCCCCCCCceeeecCCccccceeeecccccccc-c--cccCCCCcEE
Q psy12465 79 GFPLSRHSNMKLKDAGLNSLSPILRLTRAGETAWGDLPGDDWSVFLTNHSTYETLEFAFNQSERHI-D--AGLNSLSPIL 155 (434)
Q Consensus 79 g~pl~~~~n~~lkd~~in~~splLritr~~~~~~g~lpg~dWt~F~~nhstyepv~~a~~~~~~~~-D--~~in~~SpVL 155 (434)
||||++|+|+|||||+|||.||||||||+|++++|+|||+||||||+||||||||++|++++++.. + ....+.++|+
T Consensus 179 gFpl~l~~Nl~lkd~~vnP~spllritk~~~~e~g~lpg~DWtvFq~nhstyepVl~a~~~t~e~~~~~~~~~~~~~tVv 258 (873)
T KOG3703|consen 179 GFPLFLHSNLRLKDCSVNPLSPLLRITKASELEKGSLPGDDWTVFQSNHSTYEPVLLAKVKTGESLAPSGLVQALLATVV 258 (873)
T ss_pred CcceeeecccchhhhccCCCCceeEeccccccccCCCCCCceeEEecccccccceeeeecccCccCCchhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999875 2 3356788999
Q ss_pred EEecCCCcc--ccccCCCCcccccccchhHhHHHHh-----hcccccceecCCCCCccCCCCcccchhHHHHHHHHHHHH
Q psy12465 156 RLTRAGETA--WGDLPGDDWSVFLTNHSTYETLEFA-----FNQSERHIVLPQSGEEFGSGNQTFYSTVIQALLRTQKRI 228 (434)
Q Consensus 156 ritd~G~~d--qrvLfG~dWt~Fl~nhstydpV~~a-----~~~l~R~i~VdiddifvG~~gtrm~~tdVqdLl~~Q~~l 228 (434)
| |.|.+| ||||||+++++|+|++.|+|||+|+ +++|||||||||||||||++||||.++||+|||+||+++
T Consensus 259 q--D~GlhDGiqRvlFG~nL~fwlhkliFlDAl~~lsgkrlsl~LdRyilVDIDDiFVGkeGTRm~~~DV~aLi~TQn~l 336 (873)
T KOG3703|consen 259 Q--DLGLHDGIQRVLFGNNLNFWLHKLIFLDALSFLSGKRLSLSLDRYILVDIDDIFVGKEGTRMKVEDVRALIDTQNEL 336 (873)
T ss_pred h--hccccccceeeeecCchHHHHHHHHHHHHHHHHhCCceeechhheEEechhhheecCccccccHHHHHHHHHHHHHH
Confidence 9 999999 9999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HhhcCCceeeecccccceecCCccccchhhHHhhccccceecccccCCCCCcccCchhHHHHHHHhhHHHHh--------
Q psy12465 229 QKLVRGFKFNLGFSGKYFHHGESEENAGDDLLLENAHEFTWFSHMWNHQQPHLYENQTQLEVDMMLNKQFAK-------- 300 (434)
Q Consensus 229 r~~v~~F~FnLGFSGkf~~~G~~~E~~GD~~Ll~~~~~F~WF~HMw~H~qpH~f~n~s~L~~~M~lNk~FA~-------- 300 (434)
|++||||||||||||||||+||+|||+|||+||++++|||||||||||||||+|||+|+|+++|.+||+||+
T Consensus 337 r~~v~nFtFnLGfSGkfyhtGt~eEd~GDd~Ll~~v~eF~WFpHMWsHmqpHlfhN~s~L~~qM~lNk~FA~ehgiPtd~ 416 (873)
T KOG3703|consen 337 RAQVPNFTFNLGFSGKFYHTGTEEEDAGDDFLLENVKEFWWFPHMWSHMQPHLFHNESVLAAQMALNKKFALEHGIPTDM 416 (873)
T ss_pred HHhCCCeEEEecccceeeccCCchhhcccHHHHhhhHhheechhhhhccCchhhccHHHHHHHHHHhHHHHHhcCCCcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy12465 301 -------------------------------------------------------------------------------- 300 (434)
Q Consensus 301 -------------------------------------------------------------------------------- 300 (434)
T Consensus 417 gYavaPhHsGVyPvH~qLy~AWkkVWni~VTsTEEYPHlkPAr~RrGFIH~~ImVLPRQTCGLfTHTify~eYPgG~~el 496 (873)
T KOG3703|consen 417 GYAVAPHHSGVYPVHEQLYEAWKKVWNIKVTSTEEYPHLKPARYRRGFIHNGIMVLPRQTCGLFTHTIFYDEYPGGSDEL 496 (873)
T ss_pred ccccccccCCcchHHHHHHHHHHHHcCeEeeecccCCccChhhhhccchhcceEEeccccccceeeeeeeccCCCChHHH
Confidence
Q ss_pred -----------------hhhhccccccccCCcceeeechhhhhhhhhccccccccCChhhHHHHHhhhCCCCCCCCcCCC
Q psy12465 301 -----------------INIFMSHMGNYGNDRLALYTFESVIKFITCWTNLHLSSAPPMRIAEKYFQLYPEEQDPIWGNP 363 (434)
Q Consensus 301 -----------------isIFMth~~nYg~drl~lytf~~~~~f~~~wtnlrl~~~pp~~la~~yf~~~p~e~~P~w~nP 363 (434)
|||||||||||||||||||||+++++|++|||||||||+|||+||++||++||+|++|+||||
T Consensus 497 dksI~GGeLF~TillNPIsIFMTHlsNYgnDRLgLYTF~~l~rFlqcWTnlkLqtlpPvqlaq~YF~lfpee~dPlWqnP 576 (873)
T KOG3703|consen 497 DKSIQGGELFLTILLNPISIFMTHLSNYGNDRLGLYTFENLVRFLQCWTNLKLQTLPPVQLAQKYFELFPEEKDPLWQNP 576 (873)
T ss_pred hhhcccceeEEeeecccHHHHHHHhhhccccchhhhhHHHHHHHHHHHhhceeccCCchhHHHHHHHhCccccCccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccccccCCCCCCCCCCeEEEccCCccHHHHHHHHHhCCCcccCCCCCCCcccccccChhh
Q psy12465 364 CLDNRHVKIWSHNKSCDQLPRFLVIGPQKTGTTALYTFLSLHPNISSNSPSPASEEEEEEEEEEE 428 (434)
Q Consensus 364 C~d~rh~~i~s~~~~~~~lP~flIIGaqK~GTTaL~~~L~~HP~i~~~~~ep~~F~E~~fF~~~~ 428 (434)
|+|+||++|||++++|+++|+|+|||+|||||||||.||++||+|.++.|+|.+|||||||+...
T Consensus 577 CdDkRHkdIwskektCd~lPkfLiIGPQKTGtTAly~FLsmHp~i~sn~psp~tFEEvQFFng~N 641 (873)
T KOG3703|consen 577 CDDKRHKDIWSKEKTCDRLPKFLIIGPQKTGTTALYLFLSMHPSISSNTPSPETFEEVQFFNGNN 641 (873)
T ss_pred CCChhhhhhcCcccCcccccceEEEcCcccchhHHHHHHhhCcchhcCCCCCCchhheeeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998754
No 2
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=100.00 E-value=4.1e-128 Score=986.35 Aligned_cols=369 Identities=39% Similarity=0.707 Sum_probs=337.0
Q ss_pred CCCcceeEEEEEe-cC-CCCccccCCCCcEEEEEEechhhhhCCcHHHHHHHHHhhhhcCceEEEEeCCCCCCCCCCccC
Q psy12465 1 MPFLLERYKIEVS-GK-SLPVMTNQDKGKYGVIVFENVAKYLEMDKWNRELLDKYCREYSVGIVAFFPPTETPRFDEPVR 78 (434)
Q Consensus 1 ~~~~~f~y~~e~~-~k-~lP~Lt~~~kgry~~IIfEn~~kY~nm~~wnr~lLdkYC~ey~Vgiigf~~~~e~~~~~~~l~ 78 (434)
++++||+||+|++ || |||+||+++||||+||||||++||+|||+||||||||||+||+||||||++++|+++.++|+|
T Consensus 81 Les~Rf~y~~ei~~~kg~lP~LT~~~kGRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~VGiIgF~~~~E~sl~~~qlk 160 (487)
T PF12062_consen 81 LESNRFKYKVEIASGKGDLPVLTDNDKGRYSLIIFENLLKYLNLDSWNRELLDKYCREYGVGIIGFFKANENSLLSAQLK 160 (487)
T ss_pred HHhceeeEEEEEccCCCCCCccccCCCCcEEEEEehhHHHHcCChHHHHHHHHHHhHccCccEEEEecCCCCCccccccC
Confidence 3678999999999 77 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEeccccccccccCCCCCeeeeecCCCcccCCCCCCCceeeecCCccccceeeecccccccc--ccccCCCCcEEE
Q psy12465 79 GFPLSRHSNMKLKDAGLNSLSPILRLTRAGETAWGDLPGDDWSVFLTNHSTYETLEFAFNQSERHI--DAGLNSLSPILR 156 (434)
Q Consensus 79 g~pl~~~~n~~lkd~~in~~splLritr~~~~~~g~lpg~dWt~F~~nhstyepv~~a~~~~~~~~--D~~in~~SpVLr 156 (434)
||||++|+|++||||+|||+||||||||+|++++|+|||+|||+||+||||||||++|++++++.+ .......++|++
T Consensus 161 gfpL~l~~n~~lkd~~vnp~Spll~iTr~g~~~~g~lPg~DWtvF~~nhstYepVl~a~~~~~~~~~~~~~~~~~a~Vv~ 240 (487)
T PF12062_consen 161 GFPLFLHSNLRLKDCSVNPKSPLLRITRPGEVEWGPLPGDDWTVFQSNHSTYEPVLLAKRKSGEEIPSLSSRALLATVVQ 240 (487)
T ss_pred CCCeEEEccccccceeeCCCCcceEeccCcccccCCCCCCCcEEEecCCCCceEEEeccccccccCCCCCcCceeEEEee
Confidence 999999999999999999999999999999999999999999999999999999999999998875 333468899999
Q ss_pred EecCCCcc--ccccCCCCcccccccchhHhHHHHh-----hcccccceecCCCCCccCCCCcccchhHHHHHHHHHHHHH
Q psy12465 157 LTRAGETA--WGDLPGDDWSVFLTNHSTYETLEFA-----FNQSERHIVLPQSGEEFGSGNQTFYSTVIQALLRTQKRIQ 229 (434)
Q Consensus 157 itd~G~~d--qrvLfG~dWt~Fl~nhstydpV~~a-----~~~l~R~i~VdiddifvG~~gtrm~~tdVqdLl~~Q~~lr 229 (434)
|.|.+| ||||||+++++|+|+++|+|||+|+ +++|||||||||||||||++|+||+++||+|||+||++||
T Consensus 241 --D~G~~DGIqRVlFG~~l~fwLhkllflDaisyLs~~~l~l~L~R~IlVDIDDIFVG~~GtRm~~~DV~ALl~tQ~~lr 318 (487)
T PF12062_consen 241 --DLGLHDGIQRVLFGNNLNFWLHKLLFLDAISYLSGGRLSLSLDRYILVDIDDIFVGKEGTRMTVSDVKALLETQNQLR 318 (487)
T ss_pred --cCCCCCCceEEEecCChHHHHHHHHHHHHHHHhcCCccccChhheEEeehhhhcccCCcccCcHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hhcCCceeeecccccceecCCccccchhhHHhhccccceecccccCCCCCcccCchhHHHHHHHhhHHHHhhhhhccccc
Q psy12465 230 KLVRGFKFNLGFSGKYFHHGESEENAGDDLLLENAHEFTWFSHMWNHQQPHLYENQTQLEVDMMLNKQFAKINIFMSHMG 309 (434)
Q Consensus 230 ~~v~~F~FnLGFSGkf~~~G~~~E~~GD~~Ll~~~~~F~WF~HMw~H~qpH~f~n~s~L~~~M~lNk~FA~isIFMth~~ 309 (434)
++||||||||||||||||+||+|||+|||+||++++|||||||||||||||+|+|+|+|+++|++||+||+-.-..| .+
T Consensus 319 ~~i~~FtFnLGFSGkf~h~gt~~E~~gd~~Ll~~~~~F~WF~HmwsH~qpHl~~n~s~L~~~m~lNk~Fa~~~~ip~-~~ 397 (487)
T PF12062_consen 319 TQIPNFTFNLGFSGKFFHTGTDEEDRGDDMLLSNADEFWWFPHMWSHMQPHLFHNQSVLAEQMILNKQFAKEHGIPT-DM 397 (487)
T ss_pred hcCCCeEEEeeccEEEEecCChhhhchHHHHHhcchhheecccccccCCCeeeccHHHHHHHHHHHHHhhhhccCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999655544 55
Q ss_pred ccc--CCcceeeechhhhhhhhhccccccccCChhhHHHHHhhhCCCCCCCCcCCCCCccCcccc-ccCCCCCCCCCC
Q psy12465 310 NYG--NDRLALYTFESVIKFITCWTNLHLSSAPPMRIAEKYFQLYPEEQDPIWGNPCLDNRHVKI-WSHNKSCDQLPR 384 (434)
Q Consensus 310 nYg--~drl~lytf~~~~~f~~~wtnlrl~~~pp~~la~~yf~~~p~e~~P~w~nPC~d~rh~~i-~s~~~~~~~lP~ 384 (434)
.|+ ..+-|+|+... ....+|..+ |.--|.+.+.|-.+.|.-..-- =.|..| +-+..||.-.-.
T Consensus 398 ~yaVaphhsgvypvh~--~ly~awk~v---w~i~vTstEeYphl~pa~~rrg-------fih~~i~VLPRQTCgLfTh 463 (487)
T PF12062_consen 398 GYAVAPHHSGVYPVHE--QLYEAWKKV---WNIKVTSTEEYPHLRPARYRRG-------FIHRNIMVLPRQTCGLFTH 463 (487)
T ss_pred cceEecccCceechhH--HHHHHHHHH---HccccccceeccccccchhhcC-------eeeCcEEEccCccccceee
Confidence 666 68899999988 778899863 6667788888877777654411 135555 334456654433
No 3
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=99.21 E-value=1.8e-12 Score=135.17 Aligned_cols=180 Identities=26% Similarity=0.335 Sum_probs=108.9
Q ss_pred CCccccCCCCcEEEEEEechhhhhCCcHHHHHHHHHhhhhcCceEEEEeCCCCCCCCCCccCCcceeEeccc--------
Q psy12465 17 LPVMTNQDKGKYGVIVFENVAKYLEMDKWNRELLDKYCREYSVGIVAFFPPTETPRFDEPVRGFPLSRHSNM-------- 88 (434)
Q Consensus 17 lP~Lt~~~kgry~~IIfEn~~kY~nm~~wnr~lLdkYC~ey~Vgiigf~~~~e~~~~~~~l~g~pl~~~~n~-------- 88 (434)
.|.-+.....-=.||+.|+.+.=++- -=.++|+.-=-.|.|-|+.- +.+=-.++...-+-+-|-|..|+
T Consensus 50 ~~~~~~srtDp~VLVFvES~YS~lGq--~Iv~ILes~Rf~y~~ei~~~-kg~lP~LT~~~kGRy~lII~ENl~kYlnld~ 126 (487)
T PF12062_consen 50 VRPQDRSRTDPKVLVFVESQYSQLGQ--DIVAILESNRFKYKVEIASG-KGDLPVLTDNDKGRYSLIIFENLLKYLNLDS 126 (487)
T ss_pred CCCccccCCCCeEEEEEeeccchhhH--HHHHHHHhceeeEEEEEccC-CCCCCccccCCCCcEEEEEehhHHHHcCChH
Confidence 34444444445567788876554442 23556665444566654321 11112333333444556665554
Q ss_pred ----cccccccCCCCCeeeeecCCCcccCCCCCCCceeeecCCccccceeeecccccccc-ccccCCCCcEEEEecCCCc
Q psy12465 89 ----KLKDAGLNSLSPILRLTRAGETAWGDLPGDDWSVFLTNHSTYETLEFAFNQSERHI-DAGLNSLSPILRLTRAGET 163 (434)
Q Consensus 89 ----~lkd~~in~~splLritr~~~~~~g~lpg~dWt~F~~nhstyepv~~a~~~~~~~~-D~~in~~SpVLritd~G~~ 163 (434)
-|..+|.-=.-.+.-..++.+.. +.+. |.-- -|+-+ .. ...+ ||++||.||||+|||+|++
T Consensus 127 wNR~LLdkYC~ey~VGiIgF~~~~E~s---l~~~-----qlkg---fpL~l-~~--n~~lkd~~vnp~Spll~iTr~g~~ 192 (487)
T PF12062_consen 127 WNRELLDKYCREYGVGIIGFFKANENS---LLSA-----QLKG---FPLFL-HS--NLRLKDCSVNPKSPLLRITRPGEV 192 (487)
T ss_pred HHHHHHHHHhHccCccEEEEecCCCCC---cccc-----ccCC---CCeEE-Ec--cccccceeeCCCCcceEeccCccc
Confidence 23346666666777777764422 2211 1100 11111 11 1123 9999999999999999999
Q ss_pred cccccCCCCcccccccchhHhHHHHhhcccccceecCCCCCccCCCCcccchhHHHHH
Q psy12465 164 AWGDLPGDDWSVFLTNHSTYETLEFAFNQSERHIVLPQSGEEFGSGNQTFYSTVIQAL 221 (434)
Q Consensus 164 dqrvLfG~dWt~Fl~nhstydpV~~a~~~l~R~i~VdiddifvG~~gtrm~~tdVqdL 221 (434)
++|+|||+|||+|++||+|||||.+|+++. ...... .......++||+|+
T Consensus 193 ~~g~lPg~DWtvF~~nhstYepVl~a~~~~------~~~~~~--~~~~~~~a~Vv~D~ 242 (487)
T PF12062_consen 193 EWGPLPGDDWTVFQSNHSTYEPVLLAKRKS------GEEIPS--LSSRALLATVVQDL 242 (487)
T ss_pred ccCCCCCCCcEEEecCCCCceEEEeccccc------cccCCC--CCcCceeEEEeecC
Confidence 999999999999999999999999998766 333112 12237888999987
No 4
>KOG3703|consensus
Probab=99.17 E-value=8.6e-12 Score=132.29 Aligned_cols=70 Identities=46% Similarity=0.687 Sum_probs=60.1
Q ss_pred ccccCCCCcEEEEecCCCccccccCCCCcccccccchhHhHHHHhhcccccceecCCCCCccCCCCcccchhHHHHH
Q psy12465 145 DAGLNSLSPILRLTRAGETAWGDLPGDDWSVFLTNHSTYETLEFAFNQSERHIVLPQSGEEFGSGNQTFYSTVIQAL 221 (434)
Q Consensus 145 D~~in~~SpVLritd~G~~dqrvLfG~dWt~Fl~nhstydpV~~a~~~l~R~i~VdiddifvG~~gtrm~~tdVqdL 221 (434)
||.+||.|||+||||+|++++|+|||+||++|++||++||||.+|+++. ......+ ..-+.+.++||||+
T Consensus 192 d~~vnP~spllritk~~~~e~g~lpg~DWtvFq~nhstyepVl~a~~~t------~e~~~~~-~~~~~~~~tVvqD~ 261 (873)
T KOG3703|consen 192 DCSVNPLSPLLRITKASELEKGSLPGDDWTVFQSNHSTYEPVLLAKVKT------GESLAPS-GLVQALLATVVQDL 261 (873)
T ss_pred hhccCCCCceeEeccccccccCCCCCCceeEEecccccccceeeeeccc------CccCCch-hhhhhhhhhhhhhc
Confidence 9999999999999999999999999999999999999999999998877 3333322 22256888999997
No 5
>KOG3704|consensus
Probab=98.10 E-value=1.7e-06 Score=86.55 Aligned_cols=44 Identities=39% Similarity=0.655 Sum_probs=40.8
Q ss_pred CCCCCCCCeEEEccCCccHHHHHHHHHhCCCcccCCCCCCCccc
Q psy12465 377 KSCDQLPRFLVIGPQKTGTTALYTFLSLHPNISSNSPSPASEEE 420 (434)
Q Consensus 377 ~~~~~lP~flIIGaqK~GTTaL~~~L~~HP~i~~~~~ep~~F~E 420 (434)
...+++|+.||||+.|+||.||.++|+.||+|.....||||||+
T Consensus 102 ~~~k~lPqalIigvkkggtRalle~l~lhpdVra~~~e~hffD~ 145 (360)
T KOG3704|consen 102 HGSKQLPQALIIGVKKGGTRALLEFLRLHPDVRAVGSEPHFFDR 145 (360)
T ss_pred cccccCChheEEeecccchHHHHHHHhhChhhhhhccCCccccc
Confidence 35579999999999999999999999999999999999999985
No 6
>KOG3988|consensus
Probab=77.79 E-value=1.9 Score=44.53 Aligned_cols=32 Identities=25% Similarity=0.567 Sum_probs=28.9
Q ss_pred CCCCCeEEEccCCccHHHHHHHHHhCCCcccC
Q psy12465 380 DQLPRFLVIGPQKTGTTALYTFLSLHPNISSN 411 (434)
Q Consensus 380 ~~lP~flIIGaqK~GTTaL~~~L~~HP~i~~~ 411 (434)
+..|=.+|=|++|+|||-+-..|..||+|.-.
T Consensus 68 ~~mplIFiGGVPRSGTTLMRAmLDAHPdVRCG 99 (378)
T KOG3988|consen 68 RTMPLIFIGGVPRSGTTLMRAMLDAHPDVRCG 99 (378)
T ss_pred ccCceEEEcCCCCCchHHHHHHHhcCCCcccC
Confidence 45688899999999999999999999999865
No 7
>PLN02164 sulfotransferase
Probab=50.95 E-value=12 Score=38.79 Aligned_cols=22 Identities=41% Similarity=0.385 Sum_probs=18.3
Q ss_pred CCCCeEEEccCCccHHHHHHHH
Q psy12465 381 QLPRFLVIGPQKTGTTALYTFL 402 (434)
Q Consensus 381 ~lP~flIIGaqK~GTTaL~~~L 402 (434)
+-=|-+|+-.+|||||+|...+
T Consensus 78 r~~DV~laSyPKsGTTWlq~iv 99 (346)
T PLN02164 78 RPNDFLVCSYPKTGTTWLKALT 99 (346)
T ss_pred CCCCEEEEcCCCchhHHHHHHH
Confidence 3348899999999999998765
No 8
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=48.34 E-value=15 Score=37.53 Aligned_cols=51 Identities=31% Similarity=0.656 Sum_probs=38.0
Q ss_pred EEEEe--chhhhhCCcH-HHHHHHHHhhhhcCceEEEEeCCCCCCCCCCccCCcceeEeccc
Q psy12465 30 VIVFE--NVAKYLEMDK-WNRELLDKYCREYSVGIVAFFPPTETPRFDEPVRGFPLSRHSNM 88 (434)
Q Consensus 30 ~IIfE--n~~kY~nm~~-wnr~lLdkYC~ey~Vgiigf~~~~e~~~~~~~l~g~pl~~~~n~ 88 (434)
+.|+. |=.-|..++. -+|+|||-||...|-.-|.|+...+ -+|.|+| |+|+
T Consensus 151 ~mV~Dh~nr~aY~~lS~Rad~~lLe~fc~~~gy~~vvf~qT~d-------e~g~PiY-HTNV 204 (318)
T COG4874 151 VMVMDHPNRTAYAGLSQRADRELLEVFCEQIGYSRVVFFQTRD-------ESGSPIY-HTNV 204 (318)
T ss_pred eEEecccchhhhhhhhcccCHHHHHHHHHHcCCceeeeeeecc-------ccCCcce-ehhH
Confidence 44444 3445888865 5799999999999999999985443 3577886 9886
No 9
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=43.30 E-value=23 Score=35.90 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=45.8
Q ss_pred chhhhhhhhhccccccccCChh--hHHHHHhhhCCCCCCCCcCCCCCccCccccccCCCCCCCCCCeEEEccCCccHHHH
Q psy12465 321 FESVIKFITCWTNLHLSSAPPM--RIAEKYFQLYPEEQDPIWGNPCLDNRHVKIWSHNKSCDQLPRFLVIGPQKTGTTAL 398 (434)
Q Consensus 321 f~~~~~f~~~wtnlrl~~~pp~--~la~~yf~~~p~e~~P~w~nPC~d~rh~~i~s~~~~~~~lP~flIIGaqK~GTTaL 398 (434)
|..++.=+.+.++.+-...|-. .+-++||+.-- .. .+.=-|+|+.+.+-|. .-|-+++|+.|||=|-|
T Consensus 90 l~p~i~~le~~lg~~p~~~pG~~~~ld~~Yf~RIe--Ai-efal~hDDG~~~~~l~-------~ADIiLvGVSRtsKTPl 159 (269)
T PRK05339 90 LGPLIAPLEQELGLKPTPEPGRTHGLDEEYFKRIE--AI-EFALAHDDGQDPRGLD-------EADVILVGVSRTSKTPT 159 (269)
T ss_pred cHHHHHHHHHHHCcCCCCCCCcccCCcHHHHHHHH--HH-HHHHHcCCCCCcCCcc-------cCCEEEECcCCCCCcHH
Confidence 3444444445544433332211 14456665411 01 2223466666555555 38999999999999999
Q ss_pred HHHHHhCCCccc
Q psy12465 399 YTFLSLHPNISS 410 (434)
Q Consensus 399 ~~~L~~HP~i~~ 410 (434)
.-||++. .+..
T Consensus 160 S~YLA~~-G~Kv 170 (269)
T PRK05339 160 SLYLANK-GIKA 170 (269)
T ss_pred HHHHHcc-CCce
Confidence 9999994 4443
No 10
>KOG1584|consensus
Probab=42.94 E-value=19 Score=37.04 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.2
Q ss_pred CCeEEEccCCccHHHHHHHH
Q psy12465 383 PRFLVIGPQKTGTTALYTFL 402 (434)
Q Consensus 383 P~flIIGaqK~GTTaL~~~L 402 (434)
=|.+|+-.+|||||+|.+..
T Consensus 40 dDiiiaTyPKsGTTWlkel~ 59 (297)
T KOG1584|consen 40 DDVIIATYPKSGTTWLQELT 59 (297)
T ss_pred CCEEEEecCCCchHHHHHHH
Confidence 36788889999999998543
No 11
>PF15436 PGBA_N: Plasminogen-binding protein pgbA N-terminal
Probab=38.97 E-value=24 Score=34.84 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhcCceEEEEeCCCCCCCCC
Q psy12465 44 KWNRELLDKYCREYSVGIVAFFPPTETPRFD 74 (434)
Q Consensus 44 ~wnr~lLdkYC~ey~Vgiigf~~~~e~~~~~ 74 (434)
.=.|+-|.|.|.+|+||+|-++..++--.+.
T Consensus 133 ~P~~~dfrkfc~~~svGli~iv~~n~~~~lD 163 (218)
T PF15436_consen 133 DPTREDFRKFCNQYSVGLIFIVLKNKLYILD 163 (218)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEEcCcEEEEe
Confidence 3459999999999999999998766554433
No 12
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=37.34 E-value=51 Score=29.28 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCCCCCCeEEEccCCccHHHHHHHHHhC
Q psy12465 378 SCDQLPRFLVIGPQKTGTTALYTFLSLH 405 (434)
Q Consensus 378 ~~~~lP~flIIGaqK~GTTaL~~~L~~H 405 (434)
.++.+|+..|+|...+|=|+|.+.|...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999999864
No 13
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=35.83 E-value=29 Score=35.49 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=33.4
Q ss_pred HHhhcccccceecCCCCCccCCCCcccchhHHHHHHHHHHHHHhhcCCcee-eecccccceecCC
Q psy12465 187 EFAFNQSERHIVLPQSGEEFGSGNQTFYSTVIQALLRTQKRIQKLVRGFKF-NLGFSGKYFHHGE 250 (434)
Q Consensus 187 ~~a~~~l~R~i~VdiddifvG~~gtrm~~tdVqdLl~~Q~~lr~~v~~F~F-nLGFSGkf~~~G~ 250 (434)
.|+...-+=|+|+ +||+.. .. -..+-+++.+..+.. +.---..| .|||.||.||+.+
T Consensus 164 ~y~~~~~~YyL~L-EDDVia-~~---~f~~~i~~~v~~~~~--~~W~~LeFs~lG~iGKlf~s~d 221 (297)
T PF04666_consen 164 NYCQNLGDYYLQL-EDDVIA-AP---GFLSRIKRFVEAWES--KDWLYLEFSQLGFIGKLFRSSD 221 (297)
T ss_pred HHHHhcCCeEEEe-cCCeEe-ch---hHHHHHHHHHHHhcC--CCceEEEeecCcchhheecccc
Confidence 3444444444555 677764 22 244556666666554 22233456 4999999999853
No 14
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=33.87 E-value=59 Score=30.52 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=37.8
Q ss_pred eEEEEEecCCCCccccCCCCcEEEEEEechhhhhCCcHHHHHHHHHhhhhcCceEEEEe
Q psy12465 7 RYKIEVSGKSLPVMTNQDKGKYGVIVFENVAKYLEMDKWNRELLDKYCREYSVGIVAFF 65 (434)
Q Consensus 7 ~y~~e~~~k~lP~Lt~~~kgry~~IIfEn~~kY~nm~~wnr~lLdkYC~ey~Vgiigf~ 65 (434)
.|++++.- +...+++.+=.+|-|||+-+-.. ..++.-+++.|++|++ -|.|+|+++
T Consensus 33 ~~~v~~~~-~~~~~~~~~L~~~Dvvv~~~~~~-~~l~~~~~~al~~~v~-~Ggglv~lH 88 (217)
T PF06283_consen 33 GFEVTVTE-DPDDLTPENLKGYDVVVFYNTGG-DELTDEQRAALRDYVE-NGGGLVGLH 88 (217)
T ss_dssp CEEEEECC-SGGCTSHHCHCT-SEEEEE-SSC-CGS-HHHHHHHHHHHH-TT-EEEEEG
T ss_pred CEEEEEEe-CcccCChhHhcCCCEEEEECCCC-CcCCHHHHHHHHHHHH-cCCCEEEEc
Confidence 45555442 44556655566898988876551 1289999999999987 799999999
No 15
>PF06297 PET: PET Domain; InterPro: IPR010442 The PET domain is a ~110 amino acid motif in the N-terminal part of LIM domain proteins. The domain was described in Drosophila proteins involved in cell differentiation and is named after Prickle, Espinas and Testin. PET domain proteins contain about three zinc-binding LIM domains (see PDOC00382 from INTERPRO, IPR001781 from INTERPRO) and are found among metazoans. The PET domain has been suggested to play a role in protein-protein interactions with proteins involved in planar polarity signalling or organisation of the cytoskeleton []. Some proteins known to contain a PET domain: Mammalian testin protein (Q9UGI8 from SWISSPROT), which may function as a tumour suppressor. Mammalian LIM domain only protein 6 (LMO6/Prickle3, O43900 from SWISSPROT). Fruit fly prickle (A1Z6W3 from SWISSPROT) and espinas (Q9U1I1 from SWISSPROT) proteins encoded by the tissue polarity gene prickle (pk), involved in the control of orientation of bristles and hairs. Mammalian prickle-like proteins 1 (Q96MT3 from SWISSPROT) and 2 (Q7Z3G6 from SWISSPROT). ; GO: 0008270 zinc ion binding
Probab=33.00 E-value=34 Score=30.30 Aligned_cols=32 Identities=31% Similarity=0.579 Sum_probs=25.1
Q ss_pred cccccCChh---hHHHHHhhhCCCCCCCCcCCCCC
Q psy12465 334 LHLSSAPPM---RIAEKYFQLYPEEQDPIWGNPCL 365 (434)
Q Consensus 334 lrl~~~pp~---~la~~yf~~~p~e~~P~w~nPC~ 365 (434)
....|+||- .++++||..+|+++.|+-..+=.
T Consensus 19 ~~Y~WvPpgl~~~~v~~Ym~~LP~~~vP~~gS~Ge 53 (106)
T PF06297_consen 19 EEYAWVPPGLSPELVEQYMSCLPEEKVPVVGSPGE 53 (106)
T ss_pred ceeeecCCCCChHHHHHHHHhCCCcCCCCCCCHHH
Confidence 345678864 69999999999999998665443
No 16
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=31.76 E-value=44 Score=24.92 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=16.0
Q ss_pred ccCCccHHHHHHHHH-hCCC
Q psy12465 389 GPQKTGTTALYTFLS-LHPN 407 (434)
Q Consensus 389 GaqK~GTTaL~~~L~-~HP~ 407 (434)
+..++||+.|-+-|. .||+
T Consensus 30 ~~~~~gTs~L~rHl~~~h~~ 49 (50)
T smart00614 30 RSSKGGTSNLRRHLRRKHPA 49 (50)
T ss_pred eCCCCCcHHHHHHHHhHCcC
Confidence 445599999999999 8986
No 17
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=29.09 E-value=52 Score=28.96 Aligned_cols=29 Identities=24% Similarity=0.309 Sum_probs=23.1
Q ss_pred CCCCCCCCeEEEccCCccHHHHHHHHHhC
Q psy12465 377 KSCDQLPRFLVIGPQKTGTTALYTFLSLH 405 (434)
Q Consensus 377 ~~~~~lP~flIIGaqK~GTTaL~~~L~~H 405 (434)
+....-+..+|+|...+|-|+|...|...
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence 33345578999999999999999888744
No 18
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=28.78 E-value=84 Score=28.07 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCCCCCCeEEEccCCccHHHHHHHHHhC
Q psy12465 378 SCDQLPRFLVIGPQKTGTTALYTFLSLH 405 (434)
Q Consensus 378 ~~~~lP~flIIGaqK~GTTaL~~~L~~H 405 (434)
+.+..|+.+|+|..-+|=|+|.+.|...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999988764
No 19
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=28.00 E-value=62 Score=26.39 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=19.6
Q ss_pred eEEEccCCccHHHHHHHHHhCCCc
Q psy12465 385 FLVIGPQKTGTTALYTFLSLHPNI 408 (434)
Q Consensus 385 flIIGaqK~GTTaL~~~L~~HP~i 408 (434)
.+|+|..++|=|+|-+.|...+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 479999999999999998876655
No 20
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=26.50 E-value=50 Score=33.27 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=39.4
Q ss_pred HHHHHhhhCCCCCCCCcCCCCCccCccccccCCCCCCCCCCeEEEccCCccHHHHHHHHHhCCCcccCCC
Q psy12465 344 IAEKYFQLYPEEQDPIWGNPCLDNRHVKIWSHNKSCDQLPRFLVIGPQKTGTTALYTFLSLHPNISSNSP 413 (434)
Q Consensus 344 la~~yf~~~p~e~~P~w~nPC~d~rh~~i~s~~~~~~~lP~flIIGaqK~GTTaL~~~L~~HP~i~~~~~ 413 (434)
+.+.||+.-- .. .|.=-|+|.+..+-+. .-|-+++|+.|||=|-|.-||++.---.++.|
T Consensus 109 ld~~Yf~RIe--Ai-efav~~DDG~~~~~l~-------~ADivLvGVSRtsKTPlS~YLA~~G~KvAN~P 168 (255)
T PF03618_consen 109 LDEDYFKRIE--AI-EFAVKHDDGKNPRGLD-------EADIVLVGVSRTSKTPLSMYLANKGYKVANVP 168 (255)
T ss_pred chHHHHHHHH--HH-HHHHHccCCCCccccc-------cCCEEEEcccccCCCchhHHHHhcCcceeecC
Confidence 6667776521 11 2333456665555444 37999999999999999999999443333444
No 21
>KOG3347|consensus
Probab=25.10 E-value=64 Score=31.02 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=29.8
Q ss_pred CCCCCeEEEccCCccHHHHHHHHHhC---CCcccC--CCCCCCcc
Q psy12465 380 DQLPRFLVIGPQKTGTTALYTFLSLH---PNISSN--SPSPASEE 419 (434)
Q Consensus 380 ~~lP~flIIGaqK~GTTaL~~~L~~H---P~i~~~--~~ep~~F~ 419 (434)
+.+||.||.|.+=||-|+|.+.|+.- +-|.++ .+|-++++
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~ 49 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYE 49 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchh
Confidence 67899999999999999999999843 333343 34555544
No 22
>PTZ00040 translation initiation factor E4; Provisional
Probab=23.95 E-value=39 Score=33.65 Aligned_cols=54 Identities=24% Similarity=0.549 Sum_probs=40.1
Q ss_pred cccCCcceeeechhhhhhhhhccccccccCChhhHHHH----------------HhhhCCCCCCCCcCCCCCcc
Q psy12465 310 NYGNDRLALYTFESVIKFITCWTNLHLSSAPPMRIAEK----------------YFQLYPEEQDPIWGNPCLDN 367 (434)
Q Consensus 310 nYg~drl~lytf~~~~~f~~~wtnlrl~~~pp~~la~~----------------yf~~~p~e~~P~w~nPC~d~ 367 (434)
+|...=-.+++|..+-+|-..|.+++ +|.+|-.. -+.+|-+.-.|.|.+|+...
T Consensus 60 ~y~~~lk~I~sF~TVEeFW~~yn~i~----~pS~L~~~~~~~r~~~~~~~~~~~~~~lFK~GIkP~WEDp~N~~ 129 (233)
T PTZ00040 60 DYKDYTKPLASFDSVQKFWQLWFNIP----QPSELLTGKRMIRESSDGSEHVVDAVMIFKDGIQPMWEDPMNAT 129 (233)
T ss_pred hHHHhceEEeEEccHHHHHHHHhCCC----ChHHcccccccccccccccccccceeeeecCCCeECcCCCCcCC
Confidence 45444456889999999999999875 56665431 15688888899999998544
No 23
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=22.15 E-value=77 Score=27.79 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=34.1
Q ss_pred CccccCCCCcEEEEEEechhhhhCCcHHHHHHHHHhhhhcCceEEEE
Q psy12465 18 PVMTNQDKGKYGVIVFENVAKYLEMDKWNRELLDKYCREYSVGIVAF 64 (434)
Q Consensus 18 P~Lt~~~kgry~~IIfEn~~kY~nm~~wnr~lLdkYC~ey~Vgiigf 64 (434)
.++..-.+|+=.+||.- -+.+++-++-+..||++|+|.++-|
T Consensus 32 ~vlkalk~gkaklViiA-----~D~~~~~kkki~~~~~~~~Vpv~~~ 73 (108)
T PTZ00106 32 STLKALRNGKAKLVIIS-----NNCPPIRRSEIEYYAMLSKTGVHHY 73 (108)
T ss_pred HHHHHHHcCCeeEEEEe-----CCCCHHHHHHHHHHHhhcCCCEEEe
Confidence 45555567888888876 3788899999999999999999876
No 24
>PRK12678 transcription termination factor Rho; Provisional
Probab=21.61 E-value=1e+02 Score=35.18 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=38.7
Q ss_pred CCCCCCCCcCCCCCcc-CccccccCCCCCCCCCCeEEEccCCccHHHHHHHHHh-----CCCccc
Q psy12465 352 YPEEQDPIWGNPCLDN-RHVKIWSHNKSCDQLPRFLVIGPQKTGTTALYTFLSL-----HPNISS 410 (434)
Q Consensus 352 ~p~e~~P~w~nPC~d~-rh~~i~s~~~~~~~lP~flIIGaqK~GTTaL~~~L~~-----HP~i~~ 410 (434)
||.++.++=..|..-. |-.|++.+ +.+==--+|||++|||=|.|...+.. ||++..
T Consensus 388 ~P~~R~~le~e~~~~giRvIDll~P---IGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ 449 (672)
T PRK12678 388 YPNERLRLETEPKKLTTRVIDLIMP---IGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHL 449 (672)
T ss_pred ChHHhcccccCcccccceeeeeecc---cccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEE
Confidence 6777766654444222 55565553 44444579999999999999988887 998764
Done!