RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12465
         (434 letters)



>d1nsta_ c.37.1.5 (A:) Heparan sulfate
           N-deacetylase/N-sulfotransferase domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 301

 Score = 88.5 bits (218), Expect = 3e-20
 Identities = 40/75 (53%), Positives = 51/75 (68%)

Query: 357 DPIWGNPCLDNRHVKIWSHNKSCDQLPRFLVIGPQKTGTTALYTFLSLHPNISSNSPSPA 416
           DP+W +PC D RH  IWS  K+CD+ P+ L+IGPQKTGTTALY FL +HP++SSN PS  
Sbjct: 1   DPLWQDPCEDKRHKDIWSKEKTCDRFPKLLIIGPQKTGTTALYLFLGMHPDLSSNYPSSE 60

Query: 417 SEEEEEEEEEEEEEK 431
           + EE +        K
Sbjct: 61  TFEEIQFFNGHNYHK 75


>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
           3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 271

 Score = 51.1 bits (121), Expect = 7e-08
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 376 NKSCDQLPRFLVIGPQKTGTTALYTFLSLHPNISSNSPSP 415
           ++   QLP+ ++IG +K GT AL  FL +HP++ +    P
Sbjct: 11  DEGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEP 50


>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 48.0 bits (113), Expect = 7e-07
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 378 SCDQLPRFLVIGPQKTGTTALYTFLSLHPNISSN 411
           S  QLP+ ++IG +K GT AL   LSLHP++++ 
Sbjct: 1   STQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAA 34


>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
           smegmatis [TaxId: 1772]}
          Length = 265

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 380 DQLPRFLVIGPQKTGTTALYTFLSLHPNISS 410
           D    +LV+  Q++G+T L   L        
Sbjct: 1   DHPTAYLVLASQRSGSTLLVESLRATGVAGE 31


>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 323

 Score = 27.2 bits (59), Expect = 3.8
 Identities = 4/24 (16%), Positives = 8/24 (33%)

Query: 408 ISSNSPSPASEEEEEEEEEEEEEK 431
           + S     A ++ E+     E   
Sbjct: 299 VISVWKVEAEDKTEKLAAALEHHH 322


>d2hlja1 d.38.1.1 (A:1-156) Hypothetical protein PP0301 {Pseudomonas
           putida [TaxId: 303]}
          Length = 156

 Score = 26.1 bits (56), Expect = 6.2
 Identities = 8/90 (8%), Positives = 24/90 (26%)

Query: 263 NAHEFTWFSHMWNHQQPHLYENQTQLEVDMMLNKQFAKINIFMSHMGNYGNDRLALYTFE 322
           +A     FS+  +     +  +                   ++  +       +      
Sbjct: 24  DAFYLLIFSYATDALMDRIGLDADSRGQSGNSLFTLEAHINYLHEVKLGTEVWVQTQILG 83

Query: 323 SVIKFITCWTNLHLSSAPPMRIAEKYFQLY 352
              K +  + +LH +    +  A +   L+
Sbjct: 84  FDRKRLHVYHSLHRAGFDEVLAASEQMLLH 113


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 25.7 bits (55), Expect = 7.0
 Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 7/59 (11%)

Query: 266 EFTWFSHMWNHQQPHLYENQTQLEVDMMLNKQFAKINIFM----SHMGNYGN---DRLA 317
           E           +    +     ++   L    A   +       H G+  N   DR A
Sbjct: 79  EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREA 137


>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
           glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 266

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 2/99 (2%)

Query: 265 HEFTWFSHMWNHQQPHLYENQTQLEVDMMLNKQFAKINIFMSHMGNYGNDRLALYTFESV 324
           +  T            L E   +      L          +  +    N+   L     +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL--PAGL 167

Query: 325 IKFITCWTNLHLSSAPPMRIAEKYFQLYPEEQDPIWGNP 363
           +  +     L L       I + +F  +      + GNP
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206


>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
           [TaxId: 44689]}
          Length = 306

 Score = 25.9 bits (56), Expect = 9.7
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 20/70 (28%)

Query: 381 QLPRFLVIGPQKTG--------------------TTALYTFLSLHPNISSNSPSPASEEE 420
            LP+ +V+G Q +G                     T     L L     ++  S   E  
Sbjct: 23  DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWG 82

Query: 421 EEEEEEEEEE 430
           E   +  +  
Sbjct: 83  EFLHKPNDMF 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0396    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,683,113
Number of extensions: 79612
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 17
Length of query: 434
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,199,356
Effective search space: 414977176
Effective search space used: 414977176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.5 bits)