BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12466
(680 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein RAD54B OS=Homo sapiens
GN=RAD54B PE=1 SV=1
Length = 910
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/326 (51%), Positives = 215/326 (65%), Gaps = 7/326 (2%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
QW N + PLVDV +D +L L+PHQ++G+ FLYE V + GAILADEMGLGK
Sbjct: 273 QWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGK 332
Query: 411 TLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+LIWTL QGPYG PVI+K LIVTP SL +NW EF+KWLG R+ + V+Q +
Sbjct: 333 TLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDH 392
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E+++ S VLIISYEML+R+ I + +FDLLICDEGHRLKN K + L+
Sbjct: 393 KVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSC 452
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
KRI+L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR P+++E +K LG
Sbjct: 453 EKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELG 512
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS- 648
E R+++L T FILRRT ++ L K E ++ CR LQ LY + + R
Sbjct: 513 ERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCL 572
Query: 649 -----RDSHLSVTHALRKICNHPGLV 669
HL AL+K+CNHP L+
Sbjct: 573 QGLLENSPHLICIGALKKLCNHPCLL 598
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 57/83 (68%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI 251
I + LIVTP SL +NW EF+KWLG R+ + V+Q +K E+++ S VLIISYEML+
Sbjct: 355 IKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLL 414
Query: 252 RAYQTIVDTEFDLLICDEKSLLK 274
R+ I + +FDLLICDE LK
Sbjct: 415 RSLDQIKNIKFDLLICDEGHRLK 437
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 26/190 (13%)
Query: 36 VYPEPGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILKD-- 93
V+ P VS+ Q + S+ + F+VV+ KPS KKHK WE D VL + G ILK+
Sbjct: 102 VHSAPKEVAVSKEQEEK-SDSLVKYFSVVWCKPSKKKHKKWEGDAVLIVKGKSFILKNLE 160
Query: 94 --TLGKVIDSKVKILDEIKPGTSSLQSSPRLNASDNVQSSTVNA-QTSSVNAQTSSVSAS 150
+G+ I K K L++I+ G + + + + ++ + + ++++S S
Sbjct: 161 GKDIGRGIGYKFKELEKIEEGQTLMICGKEIEVMGVISPDDFSSGRCFQLGGGSTAISHS 220
Query: 151 SSL-------PWRPV-----KKSRLS-------LHAKTEVNPLILPKPIVDHQ-EKNRRS 190
S + P++ V K++R + H N L++P+P +HQ N+
Sbjct: 221 SQVARKCFSNPFKSVCKPSSKENRQNDFQNCKPRHDPYTPNSLVMPRPDKNHQWVFNKNC 280
Query: 191 YILRVLIVTP 200
+ L +++ P
Sbjct: 281 FPLVDVVIDP 290
>sp|Q6PFE3|RA54B_MOUSE DNA repair and recombination protein RAD54B OS=Mus musculus
GN=Rad54b PE=2 SV=1
Length = 886
Score = 315 bits (808), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 163/330 (49%), Positives = 214/330 (64%), Gaps = 7/330 (2%)
Query: 347 EEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEM 406
+E Q N P+VDV +D L L+PHQ+ G+ FLYE V + ++ GAILADEM
Sbjct: 247 DENHQRMFNRHCSPIVDVVIDPHLVHHLRPHQKDGIIFLYECVMGMRAVGKCGAILADEM 306
Query: 407 GLGKTLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
GLGKTLQCI+LIWTL QGPYG PVI+K LIVTP SL +NW EF+KWLG R+ + V
Sbjct: 307 GLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTV 366
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+Q +K E+++ S VLIISYEML+R+ I F LLICDEGHRLKN K ++
Sbjct: 367 DQDHKVEEFINSTFHSVLIISYEMLLRSLDQIKTIPFGLLICDEGHRLKNSSIKTTTALS 426
Query: 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQ 585
L+ K ++L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR P+S++ +
Sbjct: 427 SLSCEKTVILTGTPVQNDLQEFFALVDFVNPGILGSLSSYRKIYEEPIIISREPSSSKEE 486
Query: 586 KSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA 645
+ LGE R+++L + T FILRRT +V L K E ++ CR LQ LY + +
Sbjct: 487 RELGERRATELTRLTGRFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLRSQSV 546
Query: 646 RAS------RDSHLSVTHALRKICNHPGLV 669
R +HL AL+K+CNHP L+
Sbjct: 547 RFCLQGLLENSAHLICIGALKKLCNHPCLL 576
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI 251
I + LIVTP SL +NW EF+KWLG R+ + V+Q +K E+++ S VLIISYEML+
Sbjct: 333 IKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDQDHKVEEFINSTFHSVLIISYEMLL 392
Query: 252 RAYQTIVDTEFDLLICDEKSLLK 274
R+ I F LLICDE LK
Sbjct: 393 RSLDQIKTIPFGLLICDEGHRLK 415
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 24/178 (13%)
Query: 44 EVSEAQ-NSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILKD----TLGKV 98
E++E++ A+S+ + F+VV+ K S KKHK WE D +L + G LKD +G+
Sbjct: 89 EITESKAQEEEASSLLKYFSVVWCKASKKKHKKWEGDAILIVRGRSFTLKDLEGKDIGRG 148
Query: 99 IDSKVKILDEIKPGTSSLQSSPRLN-----ASDNVQSSTVNAQTSSVNAQTSSVSASSSL 153
I K K L+ ++ G + + + +SD+ S S A SS +A
Sbjct: 149 IGYKFKDLENVEEGQTLIIGGKEIEILGTISSDDFNSGKCFQHGSGSPAVPSSQAARKCF 208
Query: 154 --PWRPVKKSRLS----------LHAKTEVNPLILPKPIVDHQEKNRR--SYILRVLI 197
P++ V +S + H N L++P+P +HQ R S I+ V+I
Sbjct: 209 SNPFKSVCQSTQAQGKRWNDCRPRHNPCTPNALVMPRPDENHQRMFNRHCSPIVDVVI 266
>sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus
GN=RAD54B PE=2 SV=1
Length = 918
Score = 315 bits (806), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/326 (50%), Positives = 220/326 (67%), Gaps = 7/326 (2%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
Q N +G P+VDV VD +++ L+PHQR+G+ FLYE V + GAILADEMGLGK
Sbjct: 280 QCMFNKAGLPVVDVVVDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGK 339
Query: 411 TLQCIALIWTLLRQGPYGM-PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+L+WTLLRQG YG PV+++ LIVTP SL NW EF+KWLG R+ + V+Q +
Sbjct: 340 TLQCISLVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDH 399
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E+++ S + V+IISYEML+R+ I EF+LLICDEGHRLKN K +T L+
Sbjct: 400 KVEEFISSPLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSC 459
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
+RI+L+GTP+QNDLQEF+ L +F NPGVLGSL +RK +EEPI+ SR P++T+ +K LG
Sbjct: 460 ERRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLG 519
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCV------EYW 643
E R+++L + T FILRRT +V L K+E ++ C+ T LQ LY + +
Sbjct: 520 EKRAAELTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLELYRKLLSSRVISSCL 579
Query: 644 DARASRDSHLSVTHALRKICNHPGLV 669
R HL AL+K+CNHP L+
Sbjct: 580 QGRLENSPHLICIGALKKLCNHPCLL 605
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 56/84 (66%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA 253
R LIVTP SL NW EF+KWLG R+ + V+Q +K E+++ S + V+IISYEML+R+
Sbjct: 364 RALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDHKVEEFISSPLYSVMIISYEMLLRS 423
Query: 254 YQTIVDTEFDLLICDEKSLLKPPS 277
I EF+LLICDE LK S
Sbjct: 424 LDQIQAIEFNLLICDEGHRLKNSS 447
Score = 36.2 bits (82), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 26/171 (15%)
Query: 40 PGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILKDTLGKVI 99
P EA +T+ F+V++ K S KKHK WE D +L G ILKD GK I
Sbjct: 110 PTSGMAKEAAAQEEPDCLTKYFSVMWCKASKKKHKKWEGDAILITKGKSVILKDMEGKDI 169
Query: 100 DS----KVKILDEIKPGTSSLQSSPRLNASDNVQSSTVNAQTSSVNAQTSSVSASSSLP- 154
K K LD ++ G + + + + + ++ + + ++LP
Sbjct: 170 GRGTGYKSKELDSLEEGQTLMIGGKEIEVMGVISADDFSSGRCFQAGIATHDTVPTALPQ 229
Query: 155 ------WRPVK-------KSRLSL--------HAKTEVNPLILPKPIVDHQ 184
+P+K K + L H + N L++P+P HQ
Sbjct: 230 TTMKQFCKPIKSACQPSTKENILLNPQSCKPRHNPNDTNSLVMPRPNASHQ 280
>sp|P41410|RAD54_SCHPO DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp54 PE=1 SV=2
Length = 852
Score = 266 bits (681), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 199/331 (60%), Gaps = 16/331 (4%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
V V +D L+R+L+PHQ +GV FLY+ V G I+ADEMGLGKTLQCIAL+WTL
Sbjct: 252 VAVVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTL 311
Query: 422 LRQGP-YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR-- 478
L+Q P G P I K +I PSSL NW +E KWLG + P+ ++ K+ ++ + +
Sbjct: 312 LKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQ 371
Query: 479 ---------VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
PVLI SYE L + + + E +L+CDEGHRLKN S + + LN+
Sbjct: 372 WASVHGRQVTRPVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNV 431
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
++R++LSGTP+QNDL E+F L +FANPG+LGS +EFRKN+E PIL+ R + TE K G
Sbjct: 432 QRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENG 491
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA---- 645
+ + ++LAK FI+RRT+D+ + L K E ++ C + Q SLY + +
Sbjct: 492 DAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINKIL 551
Query: 646 RASRDSHLSVTHALRKICNHPGLVQQPDMME 676
R + L L+KICNHP L+ + +E
Sbjct: 552 RGTGSQPLKAIGLLKKICNHPDLLNLTEDLE 582
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR-----------VS 240
I + +I PSSL NW +E KWLG + P+ ++ K+ ++ + +
Sbjct: 323 IEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTR 382
Query: 241 PVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
PVLI SYE L + + + E +L+CDE LK
Sbjct: 383 PVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLK 416
>sp|P70270|RAD54_MOUSE DNA repair and recombination protein RAD54-like OS=Mus musculus
GN=Rad54l PE=1 SV=2
Length = 747
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 201/334 (60%), Gaps = 17/334 (5%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
V V VD LS+VL+PHQR+GV FL+E V G I+ADEMGLGKTLQCI L+WTL
Sbjct: 141 VHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 422 LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE--------- 472
LRQ P P I K ++V+PSSL NW +E +KWLG R+ P ++ +K E
Sbjct: 201 LRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKWLG-GRIQPLAIDGGSKDEIDRKLEGFM 259
Query: 473 DYVYSRV-SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ +RV SP+LIISYE + L+ICDEGHRLKN +++ Y+ + LN +
Sbjct: 260 NQRGARVPSPILIISYETFRLHVGVLKKGNVGLVICDEGHRLKNSENQTYQALDSLNTSR 319
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+L+SGTP+QNDL E+F L F N G+LG+ EF+K+FE PIL+SR ++EA + GE
Sbjct: 320 RVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKSRDAAASEADRQRGEE 379
Query: 592 RSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-RD 650
R +L ++RRTSD+ + L K E ++ CR TPLQ LY R + R+
Sbjct: 380 RLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPEEELRE 439
Query: 651 SHL-----SVTHALRKICNHPGLVQQPDMMEEEG 679
+ S +L+K+CNHP L+ + EE+G
Sbjct: 440 GKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDG 473
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---------DYVYSRV-SP 241
I + ++V+PSSL NW +E +KWLG R+ P ++ +K E + +RV SP
Sbjct: 211 IEKAVVVSPSSLVKNWYNEVEKWLG-GRIQPLAIDGGSKDEIDRKLEGFMNQRGARVPSP 269
Query: 242 VLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
+LIISYE + L+ICDE LK
Sbjct: 270 ILIISYETFRLHVGVLKKGNVGLVICDEGHRLK 302
>sp|O12944|RAD54_CHICK DNA repair and recombination protein RAD54-like (Fragment)
OS=Gallus gallus GN=RAD54L PE=2 SV=1
Length = 733
Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/326 (44%), Positives = 200/326 (61%), Gaps = 17/326 (5%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
LSRVL+PHQR+GV FL++ V G I+ADEMGLGKTLQCI L+WTLLRQ P
Sbjct: 138 LSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCK 197
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYS------RV- 479
P I K ++V+PSSL NW +E +KWLG R+ P ++ +K E V S RV
Sbjct: 198 PEIEKAMVVSPSSLVRNWYNEVEKWLG-GRIQPLAIDGGSKEEIDRKLVGSMNQRGLRVP 256
Query: 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTP 539
SP+LIISYE + + L+ICDEGHRLKN +++ Y+ + LN +R+L+SGTP
Sbjct: 257 SPILIISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTP 316
Query: 540 LQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKR 599
+QNDL E+F L F N G+LG+ +EF+++FE PIL+ R +++EA++ GE R +L
Sbjct: 317 IQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELISI 376
Query: 600 TAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY------LRCVEYWDARASRDSHL 653
++RRTSD+ + L K E ++ CR TPLQ LY + VE S L
Sbjct: 377 VNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYKNFLKQAKPVEELKEGKINVSSL 436
Query: 654 SVTHALRKICNHPGLVQQPDMMEEEG 679
S +L+K+CNHP L+ + EEEG
Sbjct: 437 SSITSLKKLCNHPALIYDKCVEEEEG 462
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYS------RV-SP 241
I + ++V+PSSL NW +E +KWLG R+ P ++ +K E V S RV SP
Sbjct: 200 IEKAMVVSPSSLVRNWYNEVEKWLG-GRIQPLAIDGGSKEEIDRKLVGSMNQRGLRVPSP 258
Query: 242 VLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
+LIISYE + + L+ICDE LK
Sbjct: 259 ILIISYETFRLHAEALQKGSVGLVICDEGHRLK 291
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 313 ETLQCNQIN-SHLSVTHALRKICNHPGLVQQPDVMEEEG 350
E L+ +IN S LS +L+K+CNHP L+ V EEEG
Sbjct: 424 EELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEG 462
>sp|Q92698|RAD54_HUMAN DNA repair and recombination protein RAD54-like OS=Homo sapiens
GN=RAD54L PE=1 SV=2
Length = 747
Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 149/336 (44%), Positives = 203/336 (60%), Gaps = 21/336 (6%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
V V VD LS+VL+PHQR+GV FL+E V G I+ADEMGLGKTLQCI L+WTL
Sbjct: 141 VHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 422 LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE--------- 472
LRQ P P I K ++V+PSSL NW +E KWLG R+ P ++ +K E
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFM 259
Query: 473 DYVYSRVS-PVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ +RVS P+LIISYE + L+ICDEGHRLKN +++ Y+ + LN +
Sbjct: 260 NQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSR 319
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+L+SGTP+QNDL E+F L F N G+LG+ EF+K+FE PIL+ R ++EA + LGE
Sbjct: 320 RVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEE 379
Query: 592 RSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRD- 650
R +L ++RRTSD+ + L K E ++ CR TPLQ LY R + A+ + +
Sbjct: 380 RLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLR--QAKPAEEL 437
Query: 651 -------SHLSVTHALRKICNHPGLVQQPDMMEEEG 679
S LS +L+K+CNHP L+ + EE+G
Sbjct: 438 LEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDG 473
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---------DYVYSRV-SP 241
I + ++V+PSSL NW +E KWLG R+ P ++ +K E + +RV SP
Sbjct: 211 IDKAVVVSPSSLVKNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSP 269
Query: 242 VLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
+LIISYE + L+ICDE LK
Sbjct: 270 ILIISYETFRLHVGVLQKGSVGLVICDEGHRLK 302
>sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila
ananassae GN=okr PE=3 SV=1
Length = 791
Score = 255 bits (652), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 145/363 (39%), Positives = 206/363 (56%), Gaps = 21/363 (5%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L Q P+ E E + +PS K LV V VD LS +L+PHQR+GV F+YE V +
Sbjct: 121 CNALVLFQPPNYTEHE-RMSMDPS-KVLVHVVVDPLLSNILRPHQREGVRFMYECV-EGK 177
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
D G I+ADEMGLGKTLQC+ L+WTLLRQGP P I K ++V+PSSL NW EF K
Sbjct: 178 KGDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESKPTINKAIVVSPSSLVKNWEKEFTK 237
Query: 454 WLGLTRMCPYHVNQKNKAEDYVYSRVS--------PVLIISYEMLIRAYQTIVDTEFDLL 505
WL +C + V + S PVL+ISYE + + E ++
Sbjct: 238 WLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVLLISYETFRIYAEILCKYEVGMV 297
Query: 506 ICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREF 565
ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +F
Sbjct: 298 ICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADF 357
Query: 566 RKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLV 625
++NFE IL ++ +STE ++ ++ +L I+RRT+ + L K E ++
Sbjct: 358 KRNFENSILRGQNADSTEGERKKAIEKTQELIGLVDQCIIRRTNQILTKYLPIKFEMVIC 417
Query: 626 CRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMME 676
+ T +Q LY R + + +AS + +T L+KIC+HP L+ Q +
Sbjct: 418 VKLTAIQLQLYTNFLNSDQVRRSLADCNEKASLTALADIT-TLKKICSHPDLIHQKIEAK 476
Query: 677 EEG 679
E+G
Sbjct: 477 EKG 479
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS--------PVL 243
I + ++V+PSSL NW EF KWL +C + V + S PVL
Sbjct: 216 INKAIVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVL 275
Query: 244 IISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
+ISYE + + E ++ICDE LK
Sbjct: 276 LISYETFRIYAEILCKYEVGMVICDEGHRLK 306
>sp|P32863|RAD54_YEAST DNA repair and recombination protein RAD54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAD54 PE=1
SV=1
Length = 898
Score = 247 bits (630), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 196/363 (53%), Gaps = 55/363 (15%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLD-LE---------------------- 398
V V +D L+++L+PHQ +GV FLY V L D LE
Sbjct: 259 VPVVIDPKLAKILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTES 318
Query: 399 -----------GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447
G I+ADEMGLGKTLQCIAL+WTLLRQGP G +I K +IV PSSL +NW
Sbjct: 319 QKTEQNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNW 378
Query: 448 NDEFKKWLGLTRMCPYHVNQKNK----------------AEDYVYSRVSPVLIISYEMLI 491
+E KWLG + P V+ K A+ + V PVLIISYE L
Sbjct: 379 ANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLR 438
Query: 492 RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551
R + + L++ DEGHRLKNG S + + ++ +R++LSGTP+QNDL E+F L
Sbjct: 439 RNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALL 498
Query: 552 DFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDV 611
F+NPG+LGS EFRKNFE PIL R ++T+ + + GE + +L+ + FI+RRT+D+
Sbjct: 499 SFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRTNDI 558
Query: 612 QASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSH-----LSVTHALRKICNHP 666
A L K E ++ PLQ LY + ++ + + L L+K+CNHP
Sbjct: 559 LAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKGVGGSQPLRAIGILKKLCNHP 618
Query: 667 GLV 669
L+
Sbjct: 619 NLL 621
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK----------------AEDYV 235
I + +IV PSSL +NW +E KWLG + P V+ K A+
Sbjct: 363 IDKCIIVCPSSLVNNWANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQG 422
Query: 236 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
+ V PVLIISYE L R + + L++ DE LK
Sbjct: 423 RNIVKPVLIISYETLRRNVDQLKNCNVGLMLADEGHRLK 461
>sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila
mojavensis GN=okr PE=3 SV=1
Length = 783
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 203/364 (55%), Gaps = 22/364 (6%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +PS K V V VD LS VL+PHQR+GV F+YE V +
Sbjct: 111 CNALVLYVPPAYTEHE-RMSMDPS-KVQVHVVVDPILSNVLRPHQREGVRFMYECV-EGK 167
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L WTLLRQ P P I K +IV+PSSL NW EF K
Sbjct: 168 RGNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIIVSPSSLVKNWEKEFTK 227
Query: 454 WLGLTRMC-----PYHVNQKNKAEDYVYSRVS----PVLIISYEMLIRAYQTIVDTEFDL 504
WL C + E + + + PVL+ISYE + TE +
Sbjct: 228 WLHGRMHCLAMEGGSKEDTTRALEQFAMNTATRCGTPVLLISYETFRLYAHILCKTEVGM 287
Query: 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLRE 564
+ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +
Sbjct: 288 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAAD 347
Query: 565 FRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624
F++NFE IL ++ +ST+A++ ++ +L I+RRT+ + L K E ++
Sbjct: 348 FKRNFENSILRGQNADSTDAERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVV 407
Query: 625 VCRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMM 675
+ TP+Q +Y R + + +AS + +T L+K+CNHP L+ +
Sbjct: 408 CVKLTPVQLQIYTNFLKSDQVRRSLADCNEKASLTALADIT-TLKKLCNHPDLIYEKIAA 466
Query: 676 EEEG 679
+E+G
Sbjct: 467 KEKG 470
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-----PYHVNQKNKAEDYVYSRV----SPV 242
I + +IV+PSSL NW EF KWL C + E + + +PV
Sbjct: 206 ISKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRALEQFAMNTATRCGTPV 265
Query: 243 LIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
L+ISYE + TE ++ICDE LK
Sbjct: 266 LLISYETFRLYAHILCKTEVGMVICDEGHRLK 297
>sp|B3NAN8|RAD54_DROER DNA repair and recombination protein RAD54-like OS=Drosophila
erecta GN=okr PE=3 SV=1
Length = 784
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 206/363 (56%), Gaps = 21/363 (5%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +PS K LV V VD LS +L+PHQR+GV F+YE V +
Sbjct: 118 CNALVLFHPPAYTEHE-RMGMDPS-KVLVHVVVDPLLSNILRPHQREGVRFMYECV-EGK 174
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L+WTLLRQGP P I K ++V+PSSL NW EF K
Sbjct: 175 RGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTK 234
Query: 454 WLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVLIISYEMLIRAYQTIVDTEFDLL 505
WL +C P K E + SR+ +PVL+ISYE + + E ++
Sbjct: 235 WLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYAEILCKYEVGMV 294
Query: 506 ICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREF 565
ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E++ L +F NP +LG+ F
Sbjct: 295 ICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVF 354
Query: 566 RKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLV 625
++NFE IL ++ +ST+A++ ++ +L I+RRT+ + L K E ++
Sbjct: 355 KRNFESAILRGQNTDSTDAERQRAIAKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVIC 414
Query: 626 CRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMME 676
+ T +Q LY R + +AS + +T L+KIC+HP L+ +
Sbjct: 415 AKLTSIQLELYTNFLKSDQVRRSLADCKEKASLTALADIT-TLKKICSHPNLIYEKITAR 473
Query: 677 EEG 679
++G
Sbjct: 474 DKG 476
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVL 243
I + ++V+PSSL NW EF KWL +C P K E + SR+ +PVL
Sbjct: 213 INKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVL 272
Query: 244 IISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
+ISYE + + E ++ICDE LK
Sbjct: 273 LISYETFRIYAEILCKYEVGMVICDEGHRLK 303
>sp|B4NXB8|RAD54_DROYA DNA repair and recombination protein RAD54-like OS=Drosophila
yakuba GN=okr PE=3 SV=2
Length = 784
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 206/363 (56%), Gaps = 21/363 (5%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +P+ K LV V VD LS +L+PHQR+GV F+YE V +
Sbjct: 118 CNALVLFNPPAYTEHE-RMGMDPT-KVLVHVVVDPLLSNILRPHQREGVRFMYECV-EGK 174
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L+WTLLRQGP P I K ++V+PSSL NW EF K
Sbjct: 175 RGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTK 234
Query: 454 WLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVLIISYEMLIRAYQTIVDTEFDLL 505
WL +C P K E + SR+ +PVL+ISYE + + E ++
Sbjct: 235 WLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYAEILCKYEVGMV 294
Query: 506 ICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREF 565
ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E++ L +F NP +LG+ F
Sbjct: 295 ICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVF 354
Query: 566 RKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLV 625
++NFE IL ++ +STE ++ ++ +L I+RRT+ + L K E ++
Sbjct: 355 KRNFESAILRGQNTDSTEGERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVIC 414
Query: 626 CRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMME 676
+ T +Q LY R + + +AS + +T L+KIC+HP L+ +
Sbjct: 415 AKLTSIQLELYTNFLKSDQVRRSLADCNEKASLTALADIT-TLKKICSHPDLIYEKITAR 473
Query: 677 EEG 679
E+G
Sbjct: 474 EKG 476
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVL 243
I + ++V+PSSL NW EF KWL +C P K E + SR+ +PVL
Sbjct: 213 INKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVL 272
Query: 244 IISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
+ISYE + + E ++ICDE LK
Sbjct: 273 LISYETFRIYAEILCKYEVGMVICDEGHRLK 303
>sp|O76460|RAD54_DROME DNA repair and recombination protein RAD54-like OS=Drosophila
melanogaster GN=okr PE=1 SV=1
Length = 784
Score = 243 bits (620), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 204/363 (56%), Gaps = 21/363 (5%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +P+ K LV V VD LS +L+PHQR+GV F+YE V +
Sbjct: 118 CNALVLFHPPAYTEHE-RMGMDPT-KVLVHVVVDPLLSNILRPHQREGVRFMYECV-EGK 174
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L+WTLLRQGP P I K ++V+PSSL NW EF K
Sbjct: 175 RGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTK 234
Query: 454 WLGLTRMC-PYHVNQKNKA----EDYVYSRV---SPVLIISYEMLIRAYQTIVDTEFDLL 505
WL +C P K E + + +PVL+ISYE + + E ++
Sbjct: 235 WLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEVGMV 294
Query: 506 ICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREF 565
ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E++ L +F NP +LG+ F
Sbjct: 295 ICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVF 354
Query: 566 RKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLV 625
++NFE IL ++ +STE ++ ++ +L I+RRT+ + L K E ++
Sbjct: 355 KRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVIC 414
Query: 626 CRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMME 676
+ T +Q LY R + + +AS + +T L+KIC+HP L+ +
Sbjct: 415 AKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALADIT-TLKKICSHPDLIYEKLTAR 473
Query: 677 EEG 679
E+G
Sbjct: 474 EKG 476
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKNKA----EDYVYSRV---SPVL 243
I + ++V+PSSL NW EF KWL +C P K E + + +PVL
Sbjct: 213 INKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVL 272
Query: 244 IISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
+ISYE + + E ++ICDE LK
Sbjct: 273 LISYETFRIYAEILCKYEVGMVICDEGHRLK 303
>sp|Q29KH2|RAD54_DROPS DNA repair and recombination protein RAD54-like OS=Drosophila
pseudoobscura pseudoobscura GN=okr PE=3 SV=2
Length = 782
Score = 241 bits (616), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/364 (38%), Positives = 205/364 (56%), Gaps = 22/364 (6%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P+ + E + PS LV V VD LS +L+PHQR+GV F+YE V +
Sbjct: 114 CNALVLYHAPNYTDHE-RMSMEPSS-VLVHVVVDPLLSNILRPHQREGVRFMYECV-EGK 170
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+AL+WTLL+Q P I K +IV+PSSL NW EF K
Sbjct: 171 RGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECKPTINKCIIVSPSSLVKNWEKEFTK 230
Query: 454 WLGLTRMC-----PYHVNQKNKAEDY---VYSRV-SPVLIISYEMLIRAYQTIVDTEFDL 504
WL C N E + +R+ +PVL+ISYE + + E +
Sbjct: 231 WLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVLLISYETFRIYAEILCKYEVGM 290
Query: 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLRE 564
+ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +
Sbjct: 291 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAAD 350
Query: 565 FRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624
F++NFE IL ++ +ST+ ++ ++ +L K I+RRT+ + L K E ++
Sbjct: 351 FKRNFENCILRGQNADSTDKERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVI 410
Query: 625 VCRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMM 675
+ TP+Q LY R + +AS + +T L+K+C+HP L+ +
Sbjct: 411 CAKLTPIQLQLYTNFLKSDQVRRSLADCKEKASLTALADIT-TLKKLCSHPNLICEKIAA 469
Query: 676 EEEG 679
EE+G
Sbjct: 470 EEKG 473
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-----PYHVNQKNKAEDY---VYSRV-SPV 242
I + +IV+PSSL NW EF KWL C N E + +R+ +PV
Sbjct: 209 INKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPV 268
Query: 243 LIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
L+ISYE + + E ++ICDE LK
Sbjct: 269 LLISYETFRIYAEILCKYEVGMVICDEGHRLK 300
>sp|B4M9A8|RAD54_DROVI DNA repair and recombination protein RAD54-like OS=Drosophila
virilis GN=okr PE=3 SV=1
Length = 786
Score = 239 bits (610), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 199/363 (54%), Gaps = 20/363 (5%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +PS K V V VD LS VL+PHQR+GV F+YE V +
Sbjct: 111 CNALVLYTPPAYTEHE-RMSLDPS-KLQVHVVVDPILSNVLRPHQREGVRFMYECV-EGK 167
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L WTLLRQ P P I K ++V+PSSL NW EF K
Sbjct: 168 RGNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIVVSPSSLVKNWEKEFTK 227
Query: 454 WLGLTRMC-----PYHVNQKNKAEDYVYSRVS----PVLIISYEMLIRAYQTIVDTEFDL 504
WL C + E + + + PVL+ISYE + TE +
Sbjct: 228 WLHGRMHCLAMEGGSKEDTTRTLEQFAMNTATRCGTPVLLISYETFRLYSHILCKTEVGM 287
Query: 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLRE 564
+ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +
Sbjct: 288 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTGSD 347
Query: 565 FRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624
F++NFE IL ++ +ST+A++ ++ +L I+RRT+ + L K E ++
Sbjct: 348 FKRNFENAILRGQNADSTDAERERALEKTQELVGLVNQCIIRRTNQILTKYLPVKFEMVV 407
Query: 625 VCRATPLQQSLYLRCVEYWDARASRD--------SHLSVTHALRKICNHPGLVQQPDMME 676
+ T +Q LY ++ R S + L+ L+K+CNHP L+ +
Sbjct: 408 CAKLTAVQLQLYTNFLKSDQVRRSLADCTDKTTLTALADITTLKKLCNHPDLIYEKIAAR 467
Query: 677 EEG 679
E+G
Sbjct: 468 EKG 470
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-----PYHVNQKNKAEDYVYSRV----SPV 242
I + ++V+PSSL NW EF KWL C + E + + +PV
Sbjct: 206 ISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRTLEQFAMNTATRCGTPV 265
Query: 243 LIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
L+ISYE + TE ++ICDE LK
Sbjct: 266 LLISYETFRLYSHILCKTEVGMVICDEGHRLK 297
>sp|B4GS98|RAD54_DROPE DNA repair and recombination protein RAD54-like OS=Drosophila
persimilis GN=okr PE=3 SV=1
Length = 782
Score = 239 bits (610), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 204/364 (56%), Gaps = 22/364 (6%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P+ + E + PS LV V VD LS +L+PHQR+GV F+YE V +
Sbjct: 114 CNALVLYHAPNYTDHE-RMSMEPSS-VLVHVVVDPLLSNILRPHQREGVRFMYECV-EGK 170
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+AL+WTLL+Q P I K +IV+PSSL NW EF K
Sbjct: 171 RGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECKPTINKCIIVSPSSLVKNWEKEFTK 230
Query: 454 WLGLTRMC-----PYHVNQKNKAEDY---VYSRV-SPVLIISYEMLIRAYQTIVDTEFDL 504
WL C N E + +R+ +PVL+ISYE + + E +
Sbjct: 231 WLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVLLISYETFRIYAEILCKYEVGM 290
Query: 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLRE 564
+ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +
Sbjct: 291 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAAD 350
Query: 565 FRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624
F++NFE IL ++ +ST+ ++ ++ +L K I+RRT+ + L K E ++
Sbjct: 351 FKRNFENCILRGQNADSTDKERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVI 410
Query: 625 VCRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMM 675
+ TP+Q LY R + +AS + +T L+K+C+HP L+ +
Sbjct: 411 CAKLTPIQLQLYTNFLKSDQVRRSLADCKEKASLTALADIT-TLKKLCSHPNLICEKIAA 469
Query: 676 EEEG 679
E+G
Sbjct: 470 GEKG 473
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-----PYHVNQKNKAEDY---VYSRV-SPV 242
I + +IV+PSSL NW EF KWL C N E + +R+ +PV
Sbjct: 209 INKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPV 268
Query: 243 LIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
L+ISYE + + E ++ICDE LK
Sbjct: 269 LLISYETFRIYAEILCKYEVGMVICDEGHRLK 300
>sp|B4MX21|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila
willistoni GN=okr PE=3 SV=1
Length = 784
Score = 239 bits (610), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/358 (38%), Positives = 206/358 (57%), Gaps = 27/358 (7%)
Query: 343 PDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAIL 402
P V E + K +P+ K LV V VD LS +L+PHQR+GV F+Y+ V + + G I+
Sbjct: 123 PPVYSEHERMKMDPT-KILVHVVVDPLLSNILRPHQREGVRFMYDCV-EGKKGNFNGCIM 180
Query: 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCP 462
ADEMGLGKTLQC+ L+WTLLRQ P I K +IV+PSSL NW EF KWL C
Sbjct: 181 ADEMGLGKTLQCVTLVWTLLRQSCECKPTITKAIIVSPSSLVKNWEKEFTKWLHGRMHC- 239
Query: 463 YHVNQKNKAEDYVY----------SRV-SPVLIISYEMLIRAYQTIV-DTEFDLLICDEG 510
+ ED + +R+ +PVL+ISYE R Y I+ E ++ICDEG
Sbjct: 240 -LAMEGGSKEDTIKALEQFSMNTSTRLGTPVLLISYETF-RIYANILCQNEVGMVICDEG 297
Query: 511 HRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFE 570
HRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +F++NFE
Sbjct: 298 HRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFE 357
Query: 571 EPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATP 630
PIL+ ++ +S++ ++ ++ +L I+RRT+ + L K E ++ R T
Sbjct: 358 NPILKGQNTDSSDKERERALEKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVICVRLTS 417
Query: 631 LQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMMEEEG 679
+Q Y R + + +AS + +T L+K+C+HP L+ + + ++G
Sbjct: 418 VQLEFYTNFLKSDKVRRSLADCNEKASLTALADIT-TLKKLCSHPDLIYEKMLARDKG 474
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY----------SRV-S 240
I + +IV+PSSL NW EF KWL C + ED + +R+ +
Sbjct: 210 ITKAIIVSPSSLVKNWEKEFTKWLHGRMHC--LAMEGGSKEDTIKALEQFSMNTSTRLGT 267
Query: 241 PVLIISYEMLIRAYQTIV-DTEFDLLICDEKSLLK 274
PVL+ISYE R Y I+ E ++ICDE LK
Sbjct: 268 PVLLISYETF-RIYANILCQNEVGMVICDEGHRLK 301
>sp|B4JCS7|RAD54_DROGR DNA repair and recombination protein RAD54-like OS=Drosophila
grimshawi GN=okr PE=3 SV=1
Length = 786
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/355 (39%), Positives = 195/355 (54%), Gaps = 21/355 (5%)
Query: 343 PDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAIL 402
P V E + +PS K V V VD LS VL+PHQR+GV F+YE V + G I+
Sbjct: 119 PPVYTEHERMSLDPS-KLQVHVVVDPLLSNVLRPHQREGVRFMYECV-EGKRGSFNGCIM 176
Query: 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCP 462
ADEMGLGKTLQC+ L WTLLRQ P I K ++V+PSSL NW EF KWL RM
Sbjct: 177 ADEMGLGKTLQCVTLTWTLLRQSADCKPTISKAIVVSPSSLVKNWEKEFTKWLH-GRMHC 235
Query: 463 YHVNQKNKAEDY---------VYSRV-SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHR 512
+ +K E +R +PVL+ISYE + TE ++ICDEGHR
Sbjct: 236 LAMEGGSKEETTRTLEQFAMNTSTRCGTPVLLISYETFRLYAHILCKTEVGMVICDEGHR 295
Query: 513 LKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEP 572
LKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +F++NFE
Sbjct: 296 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENA 355
Query: 573 ILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQ 632
IL ++ +ST+ ++ L++ +L I+RRT+ + L K E ++ + T +Q
Sbjct: 356 ILRGQNADSTDTERERALLKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQ 415
Query: 633 QSLYLR-------CVEYWDARASRD-SHLSVTHALRKICNHPGLVQQPDMMEEEG 679
+Y C D + LS L+K+CNHP L+ + E+G
Sbjct: 416 LQIYTNFLKSDQVCRSLADCNEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKG 470
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY--------- 234
Q + + I + ++V+PSSL NW EF KWL RM + +K E
Sbjct: 198 QSADCKPTISKAIVVSPSSLVKNWEKEFTKWLH-GRMHCLAMEGGSKEETTRTLEQFAMN 256
Query: 235 VYSRV-SPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
+R +PVL+ISYE + TE ++ICDE LK
Sbjct: 257 TSTRCGTPVLLISYETFRLYAHILCKTEVGMVICDEGHRLK 297
>sp|B3LN76|RDH54_YEAS1 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain RM11-1a) GN=RDH54 PE=3 SV=1
Length = 924
Score = 237 bits (604), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 167/509 (32%), Positives = 255/509 (50%), Gaps = 65/509 (12%)
Query: 219 RMCPYHVNQKNKAEDYVYSRVSPVLIIS-YEMLIRAYQTIVDTEFDLL----ICDEKSLL 273
++C Y N+A ++ S + P S +E L +A V +++L I K L
Sbjct: 103 KLCFY-----NEAGKFLGSSMLPSDSDSLFETLFKAGSNEVQLDYELKENAEIRSAKEAL 157
Query: 274 KPPSGN-SPGNDSGIPSLPR-KSDSGIGSLPCKRPLEESTAETLQ--CNQINSHLSVTHA 329
GN +P S ++P K+D G +P + +T + + Q N H++
Sbjct: 158 SQNMGNPNPPTTSTTETVPSTKNDGGKYQMPLSQLFSLNTVKRFKSVTKQTNEHMTTVPK 217
Query: 330 LRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERV 389
+ DV + + N + VDV VD L + L+PHQR+GV F+Y+ +
Sbjct: 218 TSQNSKAKKYYPVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVKFMYDCL 277
Query: 390 --------------CDLASL------DLEGAILADEMGLGKTLQCIALIWTLLRQGPY-- 427
C SL D+ G +LAD+MGLGKTL I LIWTL+RQ P+
Sbjct: 278 MGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIRQTPFAS 337
Query: 428 -------GMPVI---RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----- 472
G+P+ +K+L+V P +L NW EF KWL L+R+ ++ +N +
Sbjct: 338 KVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMA 397
Query: 473 --DYV-YSRVSPVLIISYEMLIRAYQTIVDTE--FDLLICDEGHRLKNGKSKLYELMTGL 527
+++ R VLII YE L+ + + + D+L+CDEGHRLKNG SK+ + L
Sbjct: 398 VRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSL 457
Query: 528 NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKS 587
+IR+++LL+GTP+QNDL EFF + DF NPG+LGS F++ F PI +R + ++
Sbjct: 458 DIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEEL 517
Query: 588 L--GELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY-----LRCV 640
L GE RS ++ + T FILRRT+ + L K + +L C+ P Q + L+
Sbjct: 518 LEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCK--PYSQQILAFKDILQGA 575
Query: 641 EYWDARASRDSHLSVTHALRKICNHPGLV 669
R + S L + L+K+CN PGLV
Sbjct: 576 RLDFGRLTFSSSLGLITLLKKVCNSPGLV 604
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 41 GGTEVSEAQNSNHATSV--TRIFNVVYGKPSAKKHKSWEQDG--VLEISGTMAILKDTLG 96
G ++ A+ N+ +S TR F ++Y KP+ KKHK+W DG L+ S + G
Sbjct: 52 AGPTLNLAKKPNNLSSNENTRYFTIMYRKPTTKKHKTWSGDGYATLKASSDKLCFYNEAG 111
Query: 97 KVIDSKVKILDE-------IKPGTSSLQSSPRLNASDNVQSSTVNAQTSSVNAQTSSVSA 149
K + S + D K G++ +Q L + ++S+ + N + S
Sbjct: 112 KFLGSSMLPSDSDSLFETLFKAGSNEVQLDYELKENAEIRSAKEALSQNMGNPNPPTTST 171
Query: 150 SSSLP 154
+ ++P
Sbjct: 172 TETVP 176
>sp|B5VE38|RDH54_YEAS6 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=RDH54 PE=3 SV=1
Length = 924
Score = 236 bits (602), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 159/480 (33%), Positives = 243/480 (50%), Gaps = 59/480 (12%)
Query: 247 YEMLIRAYQTIVDTEFDLL----ICDEKSLLKPPSGN-SPGNDSGIPSLPR-KSDSGIGS 300
+E L +A V +++L I K L GN +P S ++P K+D G
Sbjct: 127 FETLFKAGSNEVQLDYELKENAEIRSAKEALSQNMGNPNPPTTSTTETVPSTKNDGGKYQ 186
Query: 301 LPCKRPLEESTAETLQ--CNQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSG 358
+P + +T + + Q N H++ + DV + + N +
Sbjct: 187 MPLSQLFSLNTVKRFKSVTKQTNEHMTTVPKTSQNSKAKKYYPVFDVNKIDNPIVMNKNA 246
Query: 359 KPLVDVTVDGFLSRVLKPHQRQGVSFLYERV--------------CDLASL------DLE 398
VDV VD L + L+PHQR+GV F+Y+ + C SL D+
Sbjct: 247 AAEVDVIVDPLLGKFLRPHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDIS 306
Query: 399 GAILADEMGLGKTLQCIALIWTLLRQGPY---------GMPVI---RKVLIVTPSSLTSN 446
G +LAD+MGLGKTL I LIWTL+RQ P+ G+P+ +K+L+V P +L N
Sbjct: 307 GCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGN 366
Query: 447 WNDEFKKWLGLTRMCPYHVNQKNKAE-------DYV-YSRVSPVLIISYEMLIRAYQTIV 498
W EF KWL L+R+ ++ +N + +++ R+ VLII YE L+ + +
Sbjct: 367 WKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRIYQVLIIGYEKLLSVSEELE 426
Query: 499 DTE--FDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANP 556
+ D+L+CDEGHRLKNG SK+ + L+IR+++LL+GTP+QNDL EFF + DF NP
Sbjct: 427 KNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINP 486
Query: 557 GVLGSLREFRKNFEEPILESRSPNSTEAQKSL--GELRSSQLAKRTAGFILRRTSDVQAS 614
G+LGS F++ F PI +R + ++ L GE RS ++ + T FILRRT+ +
Sbjct: 487 GILGSFASFKRRFIIPITRARDTANRYNEELLEKGEERSKEMIEITKRFILRRTNAILEK 546
Query: 615 LLNSKRETLLVCRATPLQQSLY-----LRCVEYWDARASRDSHLSVTHALRKICNHPGLV 669
L K + +L C+ P Q + L+ + + S L + L+K+CN PGLV
Sbjct: 547 YLPPKTDIILFCK--PYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSPGLV 604
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 41 GGTEVSEAQNSNHATSV--TRIFNVVYGKPSAKKHKSWEQDG--VLEISGTMAILKDTLG 96
G ++ A+ N+ +S TR F ++Y KP+ KKHK+W DG L+ S + G
Sbjct: 52 AGPTLNLAKKPNNLSSNENTRYFTIMYRKPTTKKHKTWSGDGYATLKASSDKLCFYNEAG 111
Query: 97 KVIDSKVKILDE-------IKPGTSSLQSSPRLNASDNVQSSTVNAQTSSVNAQTSSVSA 149
K S + D K G++ +Q L + ++S+ + N + S
Sbjct: 112 KFFGSSMLPSDSDSLFETLFKAGSNEVQLDYELKENAEIRSAKEALSQNMGNPNPPTTST 171
Query: 150 SSSLP 154
+ ++P
Sbjct: 172 TETVP 176
>sp|A6ZL17|RDH54_YEAS7 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain YJM789) GN=RDH54 PE=3 SV=1
Length = 924
Score = 235 bits (600), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 166/509 (32%), Positives = 255/509 (50%), Gaps = 65/509 (12%)
Query: 219 RMCPYHVNQKNKAEDYVYSRVSPVLIIS-YEMLIRAYQTIVDTEFDLL----ICDEKSLL 273
++C Y N+A ++ S + P S +E L +A V +++L I K L
Sbjct: 103 KLCFY-----NEAGKFLGSSMLPSDSDSLFETLFKAGSNEVQLDYELKENAEIRSAKEAL 157
Query: 274 KPPSGN-SPGNDSGIPSLPR-KSDSGIGSLPCKRPLEESTAETLQ--CNQINSHLSVTHA 329
GN +P S ++P K+D G +P + +T + + Q N H++
Sbjct: 158 SQNMGNPNPPTTSTTETVPSTKNDGGKYQMPLSQLFSLNTVKRFKSVTKQTNEHMTTVPK 217
Query: 330 LRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERV 389
+ DV + + N + VDV VD L + L+PHQR+GV F+Y+ +
Sbjct: 218 TSQNSKAKKYYPVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVKFMYDCL 277
Query: 390 --------------CDLASL------DLEGAILADEMGLGKTLQCIALIWTLLRQGPY-- 427
C SL D+ G +LAD+MGLGKTL I LIWTL+RQ P+
Sbjct: 278 MGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIRQTPFAS 337
Query: 428 -------GMPVI---RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----- 472
G+P+ +K+L+V P +L NW EF KWL L+R+ ++ +N +
Sbjct: 338 KVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMA 397
Query: 473 --DYV-YSRVSPVLIISYEMLIRAYQTIVDTE--FDLLICDEGHRLKNGKSKLYELMTGL 527
+++ R VLII YE L+ + + + D+L+CDEGHRLKNG SK+ + L
Sbjct: 398 VRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSL 457
Query: 528 NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKS 587
+IR+++LL+GTP+QNDL EFF + DF NPG+LGS F++ F PI +R + ++
Sbjct: 458 DIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEEL 517
Query: 588 L--GELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY-----LRCV 640
L GE RS ++ + T FILRRT+ + L K + +L C+ P Q + L+
Sbjct: 518 LEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCK--PYSQQILAFKDILQGA 575
Query: 641 EYWDARASRDSHLSVTHALRKICNHPGLV 669
+ + S L + L+K+CN PGLV
Sbjct: 576 RLDFGQLTFSSSLGLITLLKKVCNSPGLV 604
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 41 GGTEVSEAQNSNHATSV--TRIFNVVYGKPSAKKHKSWEQDG--VLEISGTMAILKDTLG 96
G ++ A+ N+ +S TR F ++Y KP+ KKHK+W DG L+ S + G
Sbjct: 52 AGPTLNLAKKPNNLSSNENTRYFTIMYRKPTTKKHKTWSGDGYATLKASSDKLCFYNEAG 111
Query: 97 KVIDSKVKILDE-------IKPGTSSLQSSPRLNASDNVQSSTVNAQTSSVNAQTSSVSA 149
K + S + D K G++ +Q L + ++S+ + N + S
Sbjct: 112 KFLGSSMLPSDSDSLFETLFKAGSNEVQLDYELKENAEIRSAKEALSQNMGNPNPPTTST 171
Query: 150 SSSLP 154
+ ++P
Sbjct: 172 TETVP 176
>sp|A4PBL4|RAD54_ORYSJ DNA repair and recombination protein RAD54 OS=Oryza sativa subsp.
japonica GN=RAD54 PE=1 SV=1
Length = 980
Score = 232 bits (591), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 136/349 (38%), Positives = 208/349 (59%), Gaps = 22/349 (6%)
Query: 337 PGLVQQPDVM-EEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASL 395
PG+ +P ++ + EG+ K N + + VD L R L+PHQR+GV F+++ V L +
Sbjct: 202 PGI--EPLILWQPEGRDKENSN---FSAIKVDHLLVRYLRPHQREGVQFMFDCVSGLLND 256
Query: 396 D-LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454
D + G ILAD+MGLGKTLQ I L++TLL QG P++++ ++VTP+SL SNW E KW
Sbjct: 257 DGISGCILADDMGLGKTLQSITLLYTLLCQGFDAKPMVKRAVVVTPTSLVSNWESEIIKW 316
Query: 455 L-GLTRMCPYHVNQKNKAEDYVYSRVSP-----VLIISYEMLIRAYQTIVD--TEFDLLI 506
L G ++ + + + S + P VLI+SYE R + + + DLLI
Sbjct: 317 LKGRVQLLALCESTRADVLSGIESFLKPLSRLQVLIVSYETF-RMHSSKFERPGSCDLLI 375
Query: 507 CDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFR 566
CDE HRLKN ++ + + L ++RILLSGTP+QNDL+EFF + +F NPGVLG FR
Sbjct: 376 CDEAHRLKNDQTLTNKALAALPCKRRILLSGTPMQNDLEEFFSMVNFTNPGVLGDATYFR 435
Query: 567 KNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVC 626
+ +E PI+ R P ++ +K+LG RS++L+ + FILRRT+ + ++ L K ++ C
Sbjct: 436 RYYEAPIICGREPTASAEEKNLGSERSAELSAKVNLFILRRTNALLSNHLPPKIVEVVCC 495
Query: 627 RATPLQQSLYLRCVEYWDAR------ASRDSHLSVTHALRKICNHPGLV 669
+ T LQ +LY + + + + L+ AL+K+CNHP L+
Sbjct: 496 KLTALQTALYNHFIHSKNVKRLISEGTKQSKVLAYITALKKLCNHPKLI 544
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 23/122 (18%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSP-----VLII 245
+ R ++VTP+SL SNW E KWL G ++ + + + S + P VLI+
Sbjct: 294 VKRAVVVTPTSLVSNWESEIIKWLKGRVQLLALCESTRADVLSGIESFLKPLSRLQVLIV 353
Query: 246 SYEMLIRAYQTIVD--TEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPC 303
SYE R + + + DLLICDE LK ND + ++ + +LPC
Sbjct: 354 SYETF-RMHSSKFERPGSCDLLICDEAHRLK--------NDQTL------TNKALAALPC 398
Query: 304 KR 305
KR
Sbjct: 399 KR 400
>sp|P38086|RDH54_YEAST DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RDH54 PE=1
SV=4
Length = 958
Score = 232 bits (591), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 146/428 (34%), Positives = 221/428 (51%), Gaps = 53/428 (12%)
Query: 293 KSDSGIGSLPCKRPLEESTAETLQ--CNQINSHLSVTHALRKICNHPGLVQQPDVMEEEG 350
K+D G +P + +T + + Q N H++ + DV + +
Sbjct: 213 KNDGGKYQMPLSQLFSLNTVKRFKSVTKQTNEHMTTVPKTSQNSKAKKYYPVFDVNKIDN 272
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERV--------------CDLASL- 395
N + VDV VD L + L+PHQR+GV F+Y+ + C SL
Sbjct: 273 PIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLV 332
Query: 396 -----DLEGAILADEMGLGKTLQCIALIWTLLRQGPY---------GMPVI---RKVLIV 438
D+ G +LAD+MGLGKTL I LIWTL+RQ P+ G+P+ +K+L+V
Sbjct: 333 LENDSDISGCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVV 392
Query: 439 TPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE-------DYV-YSRVSPVLIISYEML 490
P +L NW EF KWL L+R+ ++ +N + +++ R VLII YE L
Sbjct: 393 CPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQVLIIGYEKL 452
Query: 491 IRAYQTIVDTE--FDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
+ + + + D+L+CDEGHRLKNG SK+ + L+IR+++LL+GTP+QNDL EFF
Sbjct: 453 LSVSEELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFF 512
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL--GELRSSQLAKRTAGFILR 606
+ DF NPG+LGS F++ F PI +R + ++ L GE RS ++ + T FILR
Sbjct: 513 TIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEELLEKGEERSKEMIEITKRFILR 572
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY-----LRCVEYWDARASRDSHLSVTHALRK 661
RT+ + L K + +L C+ P Q + L+ + + S L + L+K
Sbjct: 573 RTNAILEKYLPPKTDIILFCK--PYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKK 630
Query: 662 ICNHPGLV 669
+CN PGLV
Sbjct: 631 VCNSPGLV 638
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 58 TRIFNVVYGKPSAKKHKSWEQDG--VLEISGTMAILKDTLGKVIDSKV 103
TR F ++Y KP+ KKHK+W DG L+ S + GK + S +
Sbjct: 105 TRYFTIMYRKPTTKKHKTWSGDGYATLKASSDKLCFYNEAGKFLGSSM 152
>sp|C7GQI8|RDH54_YEAS2 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain JAY291) GN=RDH54 PE=3 SV=1
Length = 924
Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/428 (34%), Positives = 221/428 (51%), Gaps = 53/428 (12%)
Query: 293 KSDSGIGSLPCKRPLEESTAETLQ--CNQINSHLSVTHALRKICNHPGLVQQPDVMEEEG 350
K+D G +P + +T + + Q N H++ + DV + +
Sbjct: 179 KNDGGKYQMPLSQLFSLNTVKRFKSVTKQTNEHMTTVPKTSQNSKAKKYYPVFDVNKIDN 238
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERV--------------CDLASL- 395
N + VDV VD L + L+PHQR+GV F+Y+ + C SL
Sbjct: 239 PIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLV 298
Query: 396 -----DLEGAILADEMGLGKTLQCIALIWTLLRQGPY---------GMPVI---RKVLIV 438
D+ G +LAD+MGLGKTL I LIWTL+RQ P+ G+P+ +K+L+V
Sbjct: 299 LENDSDISGCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVV 358
Query: 439 TPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE-------DYV-YSRVSPVLIISYEML 490
P +L NW EF KWL L+R+ ++ +N + +++ R VLII YE L
Sbjct: 359 CPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQVLIIGYEKL 418
Query: 491 IRAYQTIVDTE--FDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
+ + + + D+L+CDEGHRLKNG SK+ + L+IR+++LL+GTP+QNDL EFF
Sbjct: 419 LSVSEELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFF 478
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL--GELRSSQLAKRTAGFILR 606
+ DF NPG+LGS F++ F PI +R + ++ L GE RS ++ + T FILR
Sbjct: 479 TIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEELLKKGEERSKEMIEITKRFILR 538
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY-----LRCVEYWDARASRDSHLSVTHALRK 661
RT+ + L K + +L C+ P Q + L+ + + S L + L+K
Sbjct: 539 RTNAILEKYLPPKTDIILFCK--PYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKK 596
Query: 662 ICNHPGLV 669
+CN PGLV
Sbjct: 597 VCNSPGLV 604
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE-------DYV-YSRVSPVLII 245
++L+V P +L NW EF KWL L+R+ ++ +N + +++ R VLII
Sbjct: 354 KILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQVLII 413
Query: 246 SYEMLIRAYQTIVDTE--FDLLICDEKSLLK 274
YE L+ + + + D+L+CDE LK
Sbjct: 414 GYEKLLSVSEELEKNKHLIDMLVCDEGHRLK 444
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 41 GGTEVSEAQNSNHATSV--TRIFNVVYGKPSAKKHKSWEQDG 80
G ++ A+ N+ TS TR F ++Y KP+ KKHK+W DG
Sbjct: 52 AGPTLNLAKKPNNLTSNENTRYFTIMYRKPTTKKHKTWSGDG 93
>sp|Q09772|RDH54_SCHPO Meiotic recombination protein rdh54 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rdh54 PE=1 SV=3
Length = 811
Score = 219 bits (558), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 182/315 (57%), Gaps = 8/315 (2%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
VDV +D FLS+ L HQR+GVSFLY+ + + AILADEMGLGKTLQ I ++WTL
Sbjct: 193 VDVVIDPFLSKHLYSHQREGVSFLYDCLLGMEGKCGYSAILADEMGLGKTLQTITVVWTL 252
Query: 422 LRQGPYG--MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479
L+Q Y I ++V P +L NW +EF WLG R+ Y +++ ++
Sbjct: 253 LKQSYYANRSSTINNAMVVAPVTLLKNWENEFYNWLGHERIHVYIARCAEDFQEFTSNKT 312
Query: 480 SPVLIISYEML---IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLS 536
++I YE + +R Y +D DLLICDE HRLK+ S+ + + L RKR+LL+
Sbjct: 313 YSIIITGYETVCTYLRNYGCGID--IDLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLT 370
Query: 537 GTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQL 596
GTPLQNDL E+F + +F PG LG+ F+ +E PIL SRS N++ SLG R +L
Sbjct: 371 GTPLQNDLSEYFSMVNFIIPGSLGTPNSFKAQYERPILRSRSMNASSRDISLGAARLQRL 430
Query: 597 AKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDS-HLSV 655
+ T+ F LRR +++ A L + + +L + T Q+++Y ++ + + + +L +
Sbjct: 431 FEFTSNFTLRRKANILAKHLPPRTDIVLFIKPTHQQENVYGHVLDGFKSSVDQKGYYLKI 490
Query: 656 THALRKICNHPGLVQ 670
L KICN L++
Sbjct: 491 LTRLSKICNSTILLR 505
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 187 NRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIIS 246
NR S I ++V P +L NW +EF WLG R+ Y +++ ++ ++I
Sbjct: 260 NRSSTINNAMVVAPVTLLKNWENEFYNWLGHERIHVYIARCAEDFQEFTSNKTYSIIITG 319
Query: 247 YEML---IRAYQTIVDTEFDLLICDEKSLLKPPSGNS 280
YE + +R Y +D DLLICDE LK S +
Sbjct: 320 YETVCTYLRNYGCGID--IDLLICDEAHRLKSMSSQT 354
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 25 DSTLSKENHNYVYPEPGGT--EVSEAQNSNHATSVTRI-----FNVVYGKPSAKKHKSWE 77
+ST+ ++ NY E T EVSE N + S I +NVV+ K + KKHK+WE
Sbjct: 13 ESTIKHQSTNYTKTETATTSHEVSENANEHKGKSNIDINKIAYYNVVWRKITMKKHKTWE 72
Query: 78 QDGVL 82
DG L
Sbjct: 73 GDGFL 77
>sp|Q5T890|RAD26_HUMAN Putative DNA repair and recombination protein RAD26-like OS=Homo
sapiens GN=RAD26L PE=1 SV=1
Length = 712
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 149/297 (50%), Gaps = 27/297 (9%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL------- 422
++R L+ +QR+G FLY + G IL D+MGLGKT+Q I+ + +L
Sbjct: 130 INRYLRDYQREGTRFLYGHY-----IHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTRE 184
Query: 423 --------------RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQK 468
++ P + LIV P S+ NW DE W G R+ H N+K
Sbjct: 185 DIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHGNRK 243
Query: 469 NKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528
+ V R + + +YE L + E+ +I DE HR+KN K+++ E+M L
Sbjct: 244 DNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKALK 303
Query: 529 IRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL 588
RI L+GT LQN+++E + + D+A PG+LGS F+K F +P+ + +T+ + +
Sbjct: 304 CNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELAT 363
Query: 589 GELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA 645
G +LAK+ +G+ LRRT + L K + ++ C T Q+++Y +E D
Sbjct: 364 GRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 420
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ 255
LIV P S+ NW DE W G R+ H N+K+ V R + + +YE L
Sbjct: 212 LIVAPLSVLYNWKDELDTW-GYFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLD 270
Query: 256 TIVDTEFDLLICDEKSLLKPPSG 278
+ E+ +I DE +K P
Sbjct: 271 ELNSLEWSAVIVDEAHRIKNPKA 293
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l
PE=1 SV=1
Length = 1240
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 177/350 (50%), Gaps = 51/350 (14%)
Query: 361 LVDVTVDGFL-----SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
+DV G L L HQ++G++FLY D +G ILAD+MGLGKT+Q I
Sbjct: 79 FIDVCSSGLLLYRELYEKLFEHQKEGIAFLYSLYKD----GRKGGILADDMGLGKTVQII 134
Query: 416 ALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475
A + G + ++ VL++ P++L + W +EF KW R+ +H + K++ +
Sbjct: 135 AFL-----SGMFDASLVNHVLLIMPTNLINTWVNEFAKWTPGMRVKTFHGSSKSERTRSL 189
Query: 476 YSRV---SPVLIISYEMLIRAYQTIVDTE-----FDLLICDEGHRLKNGKSKLYELMTGL 527
+R+ + V+I +Y+ML+ +Q + +D +I DE H++K+ +K +
Sbjct: 190 -TRIQQRNGVVITTYQMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAI 248
Query: 528 NIRKRILLSGTPLQNDLQEFFYLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQK 586
R+LL+GTP+QN+LQE + L DFA G +LG+L+ F+ +E PI+ +R ++T +K
Sbjct: 249 PASNRLLLTGTPVQNNLQELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEK 308
Query: 587 SLGELRSSQLAKRTAGFILRRTSDV---------QASL---------------LNSKRET 622
+LG S L + + LRRT + +A L L K +
Sbjct: 309 ALGLKISENLMEIIKPYFLRRTKEEVQTKKADNPEARLGEKNPAGEAICDMFSLARKNDL 368
Query: 623 LLVCRATPLQQSLYLRCVEYWDAR---ASRDSHLSVTHALRKICNHPGLV 669
++ R PLQ+ +Y + V + S L+ L+K+C+HP L+
Sbjct: 369 IVWIRLLPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 418
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 190 SYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV---SPVLIIS 246
S + VL++ P++L + W +EF KW R+ +H + K++ + +R+ + V+I +
Sbjct: 144 SLVNHVLLIMPTNLINTWVNEFAKWTPGMRVKTFHGSSKSERTRSL-TRIQQRNGVVITT 202
Query: 247 YEMLIRAYQTIVDTE-----FDLLICDEKSLLKPPSGNSPGNDSGIPSLPR 292
Y+ML+ +Q + +D +I DE +K S S IP+ R
Sbjct: 203 YQMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAIPASNR 253
>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L
PE=2 SV=1
Length = 1242
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 173/349 (49%), Gaps = 49/349 (14%)
Query: 361 LVDVTVDGFL-----SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
+DV G L L +Q++G++FLY D G ILAD+MGLGKT+Q I
Sbjct: 78 FIDVCNSGLLLYQELHNQLYEYQKEGIAFLYSLYRD----GRRGGILADDMGLGKTVQII 133
Query: 416 ALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475
A + G + ++ VL++ P+SL S W EF KW R+ +H K++ +
Sbjct: 134 AFL-----SGMFDASLVNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNL 188
Query: 476 --YSRVSPVLIISYEMLIRAYQ---TIVDTEF--DLLICDEGHRLKNGKSKLYELMTGLN 528
+ + V+I +Y+MLI +Q ++ EF D +I DE H++K+ +K +
Sbjct: 189 CRIQQRNGVIITTYQMLINNWQQLSSLNGQEFLWDYVILDEAHKIKSSSTKSAICARAIP 248
Query: 529 IRKRILLSGTPLQNDLQEFFYLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKS 587
RILL+GTP+QN+LQE + L DFA G +LG+LR F+ +E PI +R ++T +K+
Sbjct: 249 ASNRILLTGTPIQNNLQELWSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKA 308
Query: 588 LGELRSSQLAKRTAGFILRRTS-----------DVQAS-------------LLNSKRETL 623
LG S L + LRRT +VQ S L+ K + +
Sbjct: 309 LGFKISENLMAIIKPYFLRRTKEEVQKKKSSNPEVQLSEKSPDVGAICEMPSLSRKNDLI 368
Query: 624 LVCRATPLQQSLYLRCVEYWDAR---ASRDSHLSVTHALRKICNHPGLV 669
+ R PLQ+ +Y + V + S L+ L+K+C+HP L+
Sbjct: 369 IWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 417
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 190 SYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV--YSRVSPVLIISY 247
S + VL++ P+SL S W EF KW R+ +H K++ + + + V+I +Y
Sbjct: 143 SLVNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNLCRIQQRNGVIITTY 202
Query: 248 EMLIRAYQ---TIVDTEF--DLLICDEKSLLKPPSGNSPGNDSGIPSLPR 292
+MLI +Q ++ EF D +I DE +K S S IP+ R
Sbjct: 203 QMLINNWQQLSSLNGQEFLWDYVILDEAHKIKSSSTKSAICARAIPASNR 252
>sp|Q9JIM3|RAD26_MOUSE Putative DNA repair and recombination protein RAD26-like OS=Mus
musculus GN=Rad26l PE=2 SV=2
Length = 699
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 154/296 (52%), Gaps = 26/296 (8%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGPY- 427
++R L+ +QR+G FLY ++ G IL D+MGLGKT+Q I+ + +L ++G
Sbjct: 118 INRYLRDYQREGAQFLYRHY-----IEGRGCILGDDMGLGKTIQVISFLAAVLHKKGTRE 172
Query: 428 ----GMPVI--------------RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
MP + LIV P S+ NW DE W G R+ H ++K+
Sbjct: 173 DIENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHGSKKD 231
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
+ R + + +YE L + + E+ +I DE HR+KN K+++ E+M +
Sbjct: 232 NELLRLKQRKCEIALTTYETLRLCLEELNSLEWSAIIVDEAHRIKNPKARVTEVMKAVKC 291
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
+ RI L+GT LQN+++E + + D+A PG+LGS F+K F +P+ + +T+ + + G
Sbjct: 292 KVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATG 351
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA 645
+LAK+ +G+ LRRT + L K + ++ C T Q+++Y +E D
Sbjct: 352 RKAMHRLAKKMSGWFLRRTKTLIKGQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 407
Score = 40.4 bits (93), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ 255
LIV P S+ NW DE W G R+ H ++K+ + R + + +YE L +
Sbjct: 199 LIVAPLSVLYNWKDELDTW-GYFRVTVLHGSKKDNELLRLKQRKCEIALTTYETLRLCLE 257
Query: 256 TIVDTEFDLLICDEKSLLKPPSG 278
+ E+ +I DE +K P
Sbjct: 258 ELNSLEWSAIIVDEAHRIKNPKA 280
>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L
PE=1 SV=1
Length = 1250
Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 171/336 (50%), Gaps = 46/336 (13%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
L L HQ++G++FLY D +G ILAD+MGLGKT+Q IA + G +
Sbjct: 92 LHNQLFEHQKEGIAFLYSLYRD----GRKGGILADDMGLGKTVQIIAFL-----SGMFDA 142
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH---VNQKNKAEDYVYSRVSPVLIIS 486
++ VL++ P++L + W EF KW R+ +H +++ + + + R + V+I +
Sbjct: 143 SLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQR-NGVIITT 201
Query: 487 YEMLIRAYQTIVD---TEF--DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541
Y+MLI +Q + EF D +I DE H++K +K + R+LL+GTP+Q
Sbjct: 202 YQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQ 261
Query: 542 NDLQEFFYLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRT 600
N+LQE + L DFA G +LG+L+ F+ +E PI +R ++T +K+LG S L
Sbjct: 262 NNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAII 321
Query: 601 AGFILRRT-SDVQ--------ASL---------------LNSKRETLLVCRATPLQQSLY 636
+ LRRT DVQ A L L+ K + ++ R PLQ+ +Y
Sbjct: 322 KPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIY 381
Query: 637 LRCVEYWDAR---ASRDSHLSVTHALRKICNHPGLV 669
+ V + S L+ L+K+C+HP L+
Sbjct: 382 RKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 417
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 190 SYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH---VNQKNKAEDYVYSRVSPVLIIS 246
S + VL++ P++L + W EF KW R+ +H +++ + + + R + V+I +
Sbjct: 143 SLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQR-NGVIITT 201
Query: 247 YEMLIRAYQTIVD---TEF--DLLICDEKSLLKPPSGNSPGNDSGIPSLPR 292
Y+MLI +Q + EF D +I DE +K S S IP+ R
Sbjct: 202 YQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNR 252
>sp|Q9GQN5|ATRX_DROME Transcriptional regulator ATRX homolog OS=Drosophila melanogaster
GN=XNP PE=1 SV=2
Length = 1311
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 149/313 (47%), Gaps = 54/313 (17%)
Query: 364 VTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GAILADEMGLGKTLQCIALIW 419
+ VD L + LKPHQ GV F+++ + E G ILA MGLGKTLQ + L
Sbjct: 445 LQVDKGLLKKLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTLQVVTLSH 504
Query: 420 TLL----RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475
TLL R G + +VLI++P S +NW EF W+ +N E Y
Sbjct: 505 TLLVNTRRTG------VDRVLIISPLSTVNNWAREFTSWMKFA--------NRNDIEVYD 550
Query: 476 YSRVSP----------------VLIISYEMLI----------------RAYQTIVDTEFD 503
SR V I+ Y+M + Q +VD D
Sbjct: 551 ISRYKDKPTRIFKLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPD 610
Query: 504 LLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLR 563
L++CDEGH LKN K+ + + +T + ++RI+L+GTPLQN+L+E++ + F P +LG+ +
Sbjct: 611 LVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYK 670
Query: 564 EFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETL 623
E+ F PI + +STE L + RS L K G I RR V A L K E +
Sbjct: 671 EYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEYV 730
Query: 624 LVCRATPLQQSLY 636
+ + LQQ LY
Sbjct: 731 VYTTLSELQQKLY 743
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 40/119 (33%)
Query: 188 RRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP------ 241
RR+ + RVLI++P S +NW EF W+ +N E Y SR
Sbjct: 511 RRTGVDRVLIISPLSTVNNWAREFTSWMKFA--------NRNDIEVYDISRYKDKPTRIF 562
Query: 242 ----------VLIISYEMLI----------------RAYQTIVDTEFDLLICDEKSLLK 274
V I+ Y+M + Q +VD DL++CDE LLK
Sbjct: 563 KLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGPDLVVCDEGHLLK 621
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l
PE=1 SV=1
Length = 1451
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 169/338 (50%), Gaps = 49/338 (14%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L HQ++GV+FLY D +G ILAD+MGLGKT+Q I+ + G Y +
Sbjct: 105 LYDHQKEGVAFLYSLYRD----GRKGGILADDMGLGKTIQVISFL-----SGMYDAELAN 155
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV--YSRVSPVLIISYEMLI 491
L+V P+SL NW EF KW R+ +H + K + + R V+I +Y+MLI
Sbjct: 156 HTLLVMPTSLIKNWVREFAKWTPGMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQMLI 215
Query: 492 RAYQTI-----VDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQE 546
Y+ + + ++D +I DE H++K +K + + + R+LL+GTP+QN+L+E
Sbjct: 216 NNYEQLGSNGHREFKWDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLRE 275
Query: 547 FFYLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFIL 605
+ L DFA G +LG+ + F+ +E PI +R ++T +K+LG S L + L
Sbjct: 276 MWALFDFACQGSLLGTSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFL 335
Query: 606 RRT-SDVQASLLN---------------------------SKRETLLV-CRATPLQQSLY 636
RRT +DVQ L +++ L+V + +Q+ +Y
Sbjct: 336 RRTKADVQQKKLKLEEGFEEEEDQENKCPNAREGVEMPSLTRKNDLIVWTYLSSVQEDIY 395
Query: 637 LRCV---EYWDARASRDSHLSVTHALRKICNHPGLVQQ 671
+ + + + + S L+ L+K+C+HP L+ Q
Sbjct: 396 NKFISLDQIKELLTTTRSPLAELTVLKKLCDHPRLLSQ 433
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV--YSRVSPVLIISYEMLIR 252
L+V P+SL NW EF KW R+ +H + K + + R V+I +Y+MLI
Sbjct: 157 TLLVMPTSLIKNWVREFAKWTPGMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQMLIN 216
Query: 253 AYQTI-----VDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPR 292
Y+ + + ++D +I DE +K S + + IP+ R
Sbjct: 217 NYEQLGSNGHREFKWDYVILDEAHKIKTSSTKTAKSAHAIPAKNR 261
>sp|Q99NG0|ARIP4_MOUSE Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1
Length = 1466
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 165/374 (44%), Gaps = 70/374 (18%)
Query: 370 LSRVLKPHQRQGVSFLYERVCD----LASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425
L+R +KPHQ G+ FLY+ + + + G ILA MGLGKTLQ I+ I L R
Sbjct: 266 LARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHT 325
Query: 426 PYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCP------------YHVNQKNKAED 473
P + VL + P + NW EF WL P + V+ N
Sbjct: 326 P-----AKTVLAIVPVNTLQNWLAEFNMWLPAPEALPADSKPEEVQPRFFKVHILNDEHK 380
Query: 474 YVYSRV---------SPVLIISYEML------------------IRAYQTIVD------- 499
V SR VL++ YEM R++ I+D
Sbjct: 381 TVASRAKVTADWVSEGGVLLMGYEMYRLLTLKKSLATSRPKKTKKRSHPVIIDLDEEDRQ 440
Query: 500 TEF-------------DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQE 546
EF D++ICDEGHR+KN ++ + + + R+R++L+G PLQN+L E
Sbjct: 441 QEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIE 500
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
++ + DF P LG+ +EF FE PIL + +ST L RS L GF+ R
Sbjct: 501 YWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQR 560
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVTHALRKICNHP 666
R V L +K E +++ R + +Q+ LY + ++ + R S + L+ C
Sbjct: 561 RGHTVLKIHLPAKEENVILVRLSQIQRDLYTQFMDRF--RDCGTSGWLGLNPLKAFCVCC 618
Query: 667 GLVQQPDMMEEEGQ 680
+ PD++ E Q
Sbjct: 619 KIWNHPDVLYEALQ 632
>sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2
Length = 3198
Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 154/311 (49%), Gaps = 24/311 (7%)
Query: 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGPY 427
L L+ +Q G+ +L + L G ILADEMGLGKT+Q IAL+ L +G +
Sbjct: 909 LLKHSLREYQHIGLDWL----VTMNERKLNG-ILADEMGLGKTIQTIALLAHLACAKGNW 963
Query: 428 GMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KAEDYVYSRVSPVLI 484
G LIV PSS+ NW EFKKW ++ Y+ +QK K + V I
Sbjct: 964 G-----PHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWTKPNAFHVCI 1018
Query: 485 ISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544
SY+++++ Q+ ++ LI DE +KN KS+ ++L+ + +R+LL+GTPLQNDL
Sbjct: 1019 TSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDL 1078
Query: 545 QEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E + L F P V S REF++ F P+ E E ++L K F+
Sbjct: 1079 MELWSLMHFLMPYVFSSHREFKEWFSNPMT-----GMIEGNMEYNETLITRLHKVIRPFL 1133
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRD-----SHLSVTHAL 659
LRR + K E ++ CR + Q+ LY + R + S ++V L
Sbjct: 1134 LRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQTGNLLSVINVLMQL 1193
Query: 660 RKICNHPGLVQ 670
RK+CNHP + +
Sbjct: 1194 RKVCNHPNMFE 1204
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KAEDYVYSRVSPVLIISYEMLIR 252
LIV PSS+ NW EFKKW ++ Y+ +QK K + V I SY+++++
Sbjct: 967 LIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKLVVQ 1026
Query: 253 AYQTIVDTEFDLLICDEKSLLK 274
Q+ ++ LI DE +K
Sbjct: 1027 DQQSFRRKKWKYLILDEAQNIK 1048
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 29/87 (33%)
Query: 311 TAETLQCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFL 370
T ETLQ + S ++V LRK+CNHP + + +P +
Sbjct: 1174 TRETLQTGNLLSVINVLMQLRKVCNHPNMFE----------------ARPTIS------- 1210
Query: 371 SRVLKPHQRQGVSFLYER-VCDLASLD 396
P Q G++F R VCD+ D
Sbjct: 1211 -----PFQMDGITFHTPRLVCDIMEYD 1232
>sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=swr-1 PE=3 SV=1
Length = 1845
Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 180/358 (50%), Gaps = 47/358 (13%)
Query: 340 VQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEG 399
VQ+PD + Q P+ P V + L L+ +Q G+ +L L + + G
Sbjct: 916 VQKPDSRQSSPQ----PT-TPTVKTEIPFLLRGTLREYQHHGLDWL----AGLYANNTNG 966
Query: 400 AILADEMGLGKTLQCIALIWTLLRQ----GPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL 455
ILADEMGLGKT+Q IAL+ L GP+ L++ P+S+ NW EFKKW
Sbjct: 967 -ILADEMGLGKTIQTIALLAHLACHHEVWGPH--------LVIVPTSVMLNWEMEFKKWC 1017
Query: 456 GLTRMCPYHVNQ---KNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHR 512
++ Y+ NQ K K + + V V I SY+M+++ Q + +I DE H
Sbjct: 1018 PGFKILTYYGNQEERKRKRQGWNNDDVWNVCITSYQMVLQDQQVFRRRRWHYMILDEAHN 1077
Query: 513 LKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANP-----GVLGSLREFRK 567
+KN KS+ ++ + G N + R+LL+GTPLQN+L E + L F P G L EF
Sbjct: 1078 IKNFKSQRWQTLLGFNTQARLLLTGTPLQNNLTELWSLLYFLAPPENGEGGFVDLTEFHN 1137
Query: 568 NFEEP---ILES-RSPNSTEAQKSLGELRSSQLAKRTAGFILRR-TSDVQASLLNSKRET 622
F P ILES R EA+ + ++L K ++LRR +DV+ + +K E
Sbjct: 1138 WFARPESQILESGREQLDDEARAII-----AKLHKVLRPYLLRRLKADVEKQ-MPAKYEH 1191
Query: 623 LLVCRATPLQQSLYLRCVEYWDARASRDS--HLSVTHA---LRKICNHPGL-VQQPDM 674
+ CR + Q+ LY + D R + S ++S+ + LRK+CNHP L V +P M
Sbjct: 1192 VEFCRLSKRQRELYDGFLSRADTRETLQSGNYMSIINCLMQLRKVCNHPDLFVDRPIM 1249
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ---KNKAEDYVYSRVSPVLIISYEMLIR 252
L++ P+S+ NW EFKKW ++ Y+ NQ K K + + V V I SY+M+++
Sbjct: 998 LVIVPTSVMLNWEMEFKKWCPGFKILTYYGNQEERKRKRQGWNNDDVWNVCITSYQMVLQ 1057
Query: 253 AYQTIVDTEFDLLICDEKSLLK 274
Q + +I DE +K
Sbjct: 1058 DQQVFRRRRWHYMILDEAHNIK 1079
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1
SV=1
Length = 1493
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 152/319 (47%), Gaps = 20/319 (6%)
Query: 366 VDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL---- 421
V GFL + L +Q+ GV +L+E C A G IL DEMGLGKT+Q IA + L
Sbjct: 499 VPGFLFKKLFKYQQTGVRWLWELHCQQA-----GGILGDEMGLGKTIQIIAFLAGLSYSK 553
Query: 422 --LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV--NQKNKAEDYV-- 475
R Y + +IV P+++ W EF W R+ H + +K E +
Sbjct: 554 IRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRD 613
Query: 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILL 535
+ +LI SY + I ++ +I DEGH+++N + + RI+L
Sbjct: 614 VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIIL 673
Query: 536 SGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQ 595
SG+P+QN+L+E + L DF PG LG+L F + F PI N++ Q +
Sbjct: 674 SGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV 733
Query: 596 LAKRTAGFILRR-TSDVQASL-LNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHL 653
L ++LRR SDV+ SL L K E +L CR T Q +Y V+ + + +
Sbjct: 734 LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEM 793
Query: 654 SVTH---ALRKICNHPGLV 669
+ ALRKICNHP L
Sbjct: 794 QIFSGLIALRKICNHPDLF 812
>sp|Q4IAK7|SWR1_GIBZE Helicase SWR1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=SWR1 PE=3 SV=1
Length = 1691
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 172/334 (51%), Gaps = 42/334 (12%)
Query: 364 VTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423
+ V L L+ +QR G+ +L + + ILADEMGLGKT+Q IAL+ L
Sbjct: 801 IEVPFLLRGTLREYQRDGLDWLAGLYANSTN-----GILADEMGLGKTIQTIALLAHLAC 855
Query: 424 Q----GPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ---KNKAEDYVY 476
GP+ L++ P+S+ NW EFKKW ++ Y+ +Q K K + +
Sbjct: 856 THEVWGPH--------LVIVPTSVMLNWEMEFKKWCPGFKILAYYGSQEERKRKRQGWNN 907
Query: 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLS 536
+ V I SY+++++ Q + +I DE H +KN KS+ ++ + G N + R+LL+
Sbjct: 908 DDIWNVCITSYQLVLQDQQVFKRRRWHYMILDEAHNIKNFKSQRWQTLLGFNTQARLLLT 967
Query: 537 GTPLQNDLQEFFYLNDFANP-----GVLGSLREFRKNFEEP---ILES-RSPNSTEAQKS 587
GTPLQN+L E + L F P G L+EF F +P ILES R EA+
Sbjct: 968 GTPLQNNLTELWSLLFFLMPAENGVGGFADLQEFHDWFAKPESQILESGREQMDDEARAI 1027
Query: 588 LGELRSSQLAKRTAGFILRR-TSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR 646
+ S+L K ++LRR +DV+ + +K E + CR + Q+ LY + D +
Sbjct: 1028 I-----SKLHKVLRPYLLRRLKADVEKQ-MPAKYEHVEFCRLSKRQRELYDGFLSRTDTK 1081
Query: 647 ASRDS--HLSVTHA---LRKICNHPGL-VQQPDM 674
+ +S +LS+ + LRK+CNHP L V +P M
Sbjct: 1082 ETLNSGNYLSIINCLMQLRKVCNHPDLFVDRPIM 1115
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ---KNKAEDYVYSRVSPVLIISYEMLIR 252
L++ P+S+ NW EFKKW ++ Y+ +Q K K + + + V I SY+++++
Sbjct: 864 LVIVPTSVMLNWEMEFKKWCPGFKILAYYGSQEERKRKRQGWNNDDIWNVCITSYQLVLQ 923
Query: 253 AYQTIVDTEFDLLICDEKSLLK 274
Q + +I DE +K
Sbjct: 924 DQQVFKRRRWHYMILDEAHNIK 945
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1
PE=1 SV=2
Length = 1849
Score = 139 bits (350), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 165/349 (47%), Gaps = 44/349 (12%)
Query: 358 GKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL 417
GK L + + ++ L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +
Sbjct: 1250 GKKLENYKIPVPINAELRKYQQDGVNWL----AFLNKYKLHG-ILCDDMGLGKTLQSICI 1304
Query: 418 IWT--LLRQGPYG-------MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQK 468
+ R Y MP+ L+V P +LT +W DE K+ + P H
Sbjct: 1305 LAGDHCHRAQEYARSKLAECMPL--PSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGP 1362
Query: 469 NKAEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG 526
+ +V +++ SY+++ + +F+ I DEGH +KNGK+KL + +
Sbjct: 1363 PTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQ 1422
Query: 527 LNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQK 586
L RI+LSGTP+QN++ E + L DF PG LG+ R+F + +PIL SR S+ ++
Sbjct: 1423 LTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQ 1482
Query: 587 SLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR 646
G L L ++ F+LRR + L K C +PLQ LY ++ +R
Sbjct: 1483 EAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLY---EDFAKSR 1539
Query: 647 ASRDSHLSVTHA-----------------------LRKICNHPGLVQQP 672
A D +V+ A LRK+CNHP LV P
Sbjct: 1540 AKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTP 1588
>sp|Q61687|ATRX_MOUSE Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=3
Length = 2476
Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 147/306 (48%), Gaps = 33/306 (10%)
Query: 359 KPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GAILADEMGLGKTLQC 414
+PLV V + + LKPHQ GV F+++ C+ + G ILA MGLGKTLQ
Sbjct: 1532 EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVEKTKKSPGSGCILAHCMGLGKTLQV 1589
Query: 415 IALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ-----K 468
++ + T+L L+V P + NW +EF+KW GL V++ +
Sbjct: 1590 VSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLNDNEKLEVSELATVKR 1646
Query: 469 NKAEDYVYSR---VSPVLIISYEMLIRAYQ---------------TIVDTEFDLLICDEG 510
+ Y+ R V+II YEM Q +VD D ++CDEG
Sbjct: 1647 PQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKDIFNKALVDPGPDFVVCDEG 1706
Query: 511 HRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFE 570
H LKN S + + M + R+RI+L+GTPLQN+L E+ + +F +LGS++EFR F
Sbjct: 1707 HILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFI 1766
Query: 571 EPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATP 630
PI + +ST + + R+ L + AG + R+ L K E +L R T
Sbjct: 1767 NPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTA 1826
Query: 631 LQQSLY 636
+Q LY
Sbjct: 1827 IQCKLY 1832
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 24/104 (23%)
Query: 195 VLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ-----KNKAEDYVYSR---VSPVLII 245
L+V P + NW +EF+KW GL V++ + + Y+ R V+II
Sbjct: 1607 ALVVCPLNTALNWMNEFEKWQEGLNDNEKLEVSELATVKRPQERSYMLQRWQEDGGVMII 1666
Query: 246 SYEMLIRAYQ---------------TIVDTEFDLLICDEKSLLK 274
YEM Q +VD D ++CDE +LK
Sbjct: 1667 GYEMYRNLAQGRNVKSRKLKDIFNKALVDPGPDFVVCDEGHILK 1710
>sp|Q7YQM4|ATRX_PANTR Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1
Length = 2492
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 147/306 (48%), Gaps = 33/306 (10%)
Query: 359 KPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GAILADEMGLGKTLQC 414
+PLV V + + LKPHQ GV F+++ C+ + G ILA MGLGKTLQ
Sbjct: 1547 EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQV 1604
Query: 415 IALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ-----K 468
++ + T+L L+V P + NW +EF+KW GL V++ +
Sbjct: 1605 VSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKR 1661
Query: 469 NKAEDYVYSR---VSPVLIISYEMLIRAYQ---------------TIVDTEFDLLICDEG 510
+ Y+ R V+II YEM Q +VD D ++CDEG
Sbjct: 1662 PQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEG 1721
Query: 511 HRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFE 570
H LKN S + + M + R+RI+L+GTPLQN+L E+ + +F +LGS++EFR F
Sbjct: 1722 HILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFI 1781
Query: 571 EPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATP 630
PI + +ST + + R+ L + AG + R+ L K E +L R T
Sbjct: 1782 NPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTS 1841
Query: 631 LQQSLY 636
+Q LY
Sbjct: 1842 IQCKLY 1847
>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 169/328 (51%), Gaps = 44/328 (13%)
Query: 369 FLSR-VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGP 426
FL R L+P+Q+ G+ +L L S ++ G ILADEMGLGKT+Q IAL+ L +G
Sbjct: 387 FLLRGTLRPYQQAGLEWL----ASLWSNNMNG-ILADEMGLGKTIQTIALLGHLACDKGV 441
Query: 427 YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV---YSRVSPVL 483
+G + LI+ P+S+ NW EFKK+L ++ Y+ NQK + E V V
Sbjct: 442 WG-----QHLIIVPTSVILNWEMEFKKFLPGMKVLTYYGNQKERKEKRVGWHTENTWQVC 496
Query: 484 IISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQND 543
I SY++++ + +I DE H +KN +S+ ++ + G ++R+LL+GTPLQN+
Sbjct: 497 ITSYQIVLADQHIFRRKNWCYMILDEAHNIKNFRSQRWQTLLGFKAQRRLLLTGTPLQNN 556
Query: 544 LQEFFYLNDFANPGVLGS----------LREFRKNFEEPILESRSPNSTEAQKSLGELRS 593
L E + L F PG +G+ +EF + F P+ ++ +++L +
Sbjct: 557 LMELWSLLYFLMPGGIGADATAVVGFANHKEFMEWFSNPMDKAIETGDAMDEETLETV-- 614
Query: 594 SQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHL 653
++L FILRR + L K E ++ CR + Q+ LY + +RAS +H
Sbjct: 615 AKLHTLLRPFILRRLKSEVETQLPGKFEHVVYCRLSKRQRFLYDEFM----SRAS--THE 668
Query: 654 SVTHA-----------LRKICNHPGLVQ 670
++T LRK+CNHP L +
Sbjct: 669 ALTTGGYLGVMNTLMQLRKVCNHPDLFE 696
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV---YSRVSPVLIISYEMLIR 252
LI+ P+S+ NW EFKK+L ++ Y+ NQK + E V V I SY++++
Sbjct: 446 LIIVPTSVILNWEMEFKKFLPGMKVLTYYGNQKERKEKRVGWHTENTWQVCITSYQIVLA 505
Query: 253 AYQTIVDTEFDLLICDEKSLLK 274
+ +I DE +K
Sbjct: 506 DQHIFRRKNWCYMILDEAHNIK 527
>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 169/328 (51%), Gaps = 44/328 (13%)
Query: 369 FLSR-VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGP 426
FL R L+P+Q+ G+ +L L S ++ G ILADEMGLGKT+Q IAL+ L +G
Sbjct: 387 FLLRGTLRPYQQAGLEWL----ASLWSNNMNG-ILADEMGLGKTIQTIALLGHLACDKGV 441
Query: 427 YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV---YSRVSPVL 483
+G + LI+ P+S+ NW EFKK+L ++ Y+ NQK + E V V
Sbjct: 442 WG-----QHLIIVPTSVILNWEMEFKKFLPGMKVLTYYGNQKERKEKRVGWHTENTWQVC 496
Query: 484 IISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQND 543
I SY++++ + +I DE H +KN +S+ ++ + G ++R+LL+GTPLQN+
Sbjct: 497 ITSYQIVLADQHIFRRKNWCYMILDEAHNIKNFRSQRWQTLLGFKAQRRLLLTGTPLQNN 556
Query: 544 LQEFFYLNDFANPGVLGS----------LREFRKNFEEPILESRSPNSTEAQKSLGELRS 593
L E + L F PG +G+ +EF + F P+ ++ +++L +
Sbjct: 557 LMELWSLLYFLMPGGIGADATAVVGFANHKEFMEWFSNPMDKAIETGDAMDEETLETV-- 614
Query: 594 SQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHL 653
++L FILRR + L K E ++ CR + Q+ LY + +RAS +H
Sbjct: 615 AKLHTLLRPFILRRLKSEVETQLPGKFEHVVYCRLSKRQRFLYDEFM----SRAS--THE 668
Query: 654 SVTHA-----------LRKICNHPGLVQ 670
++T LRK+CNHP L +
Sbjct: 669 ALTTGGYLGVMNTLMQLRKVCNHPDLFE 696
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV---YSRVSPVLIISYEMLIR 252
LI+ P+S+ NW EFKK+L ++ Y+ NQK + E V V I SY++++
Sbjct: 446 LIIVPTSVILNWEMEFKKFLPGMKVLTYYGNQKERKEKRVGWHTENTWQVCITSYQIVLA 505
Query: 253 AYQTIVDTEFDLLICDEKSLLK 274
+ +I DE +K
Sbjct: 506 DQHIFRRKNWCYMILDEAHNIK 527
>sp|Q7YQM3|ATRX_PONPY Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1
Length = 2492
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 147/306 (48%), Gaps = 33/306 (10%)
Query: 359 KPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GAILADEMGLGKTLQC 414
+PLV V + + LKPHQ GV F+++ C+ + G ILA MGLGKTLQ
Sbjct: 1547 EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQV 1604
Query: 415 IALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ-----K 468
++ + T+L L+V P + NW +EF+KW GL V++ +
Sbjct: 1605 VSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKR 1661
Query: 469 NKAEDYVYSR---VSPVLIISYEMLIRAYQ---------------TIVDTEFDLLICDEG 510
+ Y+ R V+II YEM Q +VD D ++CDEG
Sbjct: 1662 PQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEG 1721
Query: 511 HRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFE 570
H LKN S + + M + R+RI+L+GTPLQN+L E+ + +F +LGS++EFR F
Sbjct: 1722 HILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFI 1781
Query: 571 EPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATP 630
PI + +ST + + R+ L + AG + R+ L K E +L R T
Sbjct: 1782 NPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTS 1841
Query: 631 LQQSLY 636
+Q LY
Sbjct: 1842 IQCKLY 1847
>sp|P46100|ATRX_HUMAN Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5
Length = 2492
Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 147/306 (48%), Gaps = 33/306 (10%)
Query: 359 KPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GAILADEMGLGKTLQC 414
+PLV V + + LKPHQ GV F+++ C+ + G ILA MGLGKTLQ
Sbjct: 1547 EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQV 1604
Query: 415 IALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ-----K 468
++ + T+L L+V P + NW +EF+KW GL V++ +
Sbjct: 1605 VSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKR 1661
Query: 469 NKAEDYVYSR---VSPVLIISYEMLIRAYQ---------------TIVDTEFDLLICDEG 510
+ Y+ R V+II YEM Q +VD D ++CDEG
Sbjct: 1662 PQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEG 1721
Query: 511 HRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFE 570
H LKN S + + M + R+RI+L+GTPLQN+L E+ + +F +LGS++EFR F
Sbjct: 1722 HILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFI 1781
Query: 571 EPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATP 630
PI + +ST + + R+ L + AG + R+ L K E +L R T
Sbjct: 1782 NPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTS 1841
Query: 631 LQQSLY 636
+Q LY
Sbjct: 1842 IQCKLY 1847
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1
Length = 1867
Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 157/320 (49%), Gaps = 27/320 (8%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT--LLRQGPYGMPV 431
L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +I + LR+ Y
Sbjct: 1272 LRKYQQDGVNWL----AFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRKEDYEK-- 1324
Query: 432 IRKV-------LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLI 484
R V LI+ P SLT +W +EF ++ ++ Y + + +++
Sbjct: 1325 TRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLRPQLSDADIIV 1384
Query: 485 ISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544
SY++ + TE++ + DEGH +KN +SKL + + + R++L+GTP+QN++
Sbjct: 1385 TSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNV 1444
Query: 545 QEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E + L DF PG LG+ + F++ F +PI SR+ ++ ++ G L L K+ F+
Sbjct: 1445 LELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFM 1504
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYL-----------RCVEYWDARASRDSHL 653
LRR + S L K C LQ+ LY+ + +E + +
Sbjct: 1505 LRRLKEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIF 1564
Query: 654 SVTHALRKICNHPGLVQQPD 673
+RK+CNHP LV P+
Sbjct: 1565 QALQYMRKLCNHPALVLSPN 1584
>sp|Q4P328|SWR1_USTMA Helicase SWR1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SWR1
PE=3 SV=1
Length = 1830
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 163/318 (51%), Gaps = 36/318 (11%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGPYGMPVI 432
L+P+Q+ G +E +C L + + G ILADEMGLGKT+Q I+L+ L +G +G
Sbjct: 990 LRPYQQIG----FEWLCSLYANGVNG-ILADEMGLGKTIQTISLLAHLACDKGVWG---- 1040
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV---YSRVSPVLIISYEM 489
L+V P+S+ NW EFKK+L ++ Y+ NQK + E + V I SY++
Sbjct: 1041 -PHLVVAPTSVMLNWEVEFKKFLPGFKILSYYGNQKERKEKRIGWNTENSFNVCITSYQL 1099
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
++ + L+ DE H +KN +S+ ++ + G N ++R+LL+GTPLQN+L + +
Sbjct: 1100 VLADQHIFRRKPWVYLVLDEAHHIKNFRSQRWQTLLGFNSQRRLLLTGTPLQNNLMDLWS 1159
Query: 550 LNDFANP---------GVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRT 600
L F P G ++++F+ F P+ + E S+ + + + K
Sbjct: 1160 LMYFLMPNGATELPGGGAFANMKDFQDWFSNPL-----DKAIEGGTSMNDETRAMVQKLH 1214
Query: 601 A---GFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDS--HLSV 655
A ++LRR L SK E ++ CR + Q+ LY + R S S +LS+
Sbjct: 1215 AVLRPYLLRRLKSEVEKELPSKYEHVITCRLSKRQRFLYNDFMSRAKTRESLASGNYLSI 1274
Query: 656 THA---LRKICNHPGLVQ 670
+ LRK+CNHP L +
Sbjct: 1275 INCLMQLRKVCNHPDLFE 1292
Score = 40.0 bits (92), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV---YSRVSPVLIISYEMLIR 252
L+V P+S+ NW EFKK+L ++ Y+ NQK + E + V I SY++++
Sbjct: 1043 LVVAPTSVMLNWEVEFKKFLPGFKILSYYGNQKERKEKRIGWNTENSFNVCITSYQLVLA 1102
Query: 253 AYQTIVDTEFDLLICDEKSLLK 274
+ L+ DE +K
Sbjct: 1103 DQHIFRRKPWVYLVLDEAHHIK 1124
>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mot1 PE=1 SV=4
Length = 1953
Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 30/325 (9%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT--LLRQGPY 427
+S L+ +Q++GV++L L +L G IL D+MGLGKTLQ I ++ + RQ +
Sbjct: 1354 ISADLRKYQQEGVNWL----AFLNKYELHG-ILCDDMGLGKTLQTICIVASDHYNRQKLF 1408
Query: 428 ---GMPVIRKV--LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPV 482
G P V LIV PS+L +W E + ++ Y +A+ + S V
Sbjct: 1409 EESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSKMKKSDV 1468
Query: 483 LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542
++ SY++ +V +++ + DEGH +KN ++KL + + L R++LSGTP+QN
Sbjct: 1469 VVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQN 1528
Query: 543 DLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602
++ E + L DF PG LG+ + F++ F PI SR S+ ++ G L + K+
Sbjct: 1529 NVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLP 1588
Query: 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWD-----------------A 645
F+LRR + + L K C + LQ+ L V +
Sbjct: 1589 FMLRRLKEDVLADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQGTRK 1648
Query: 646 RASRDSHL-SVTHALRKICNHPGLV 669
+ S+ +H+ +RK+CNHP L+
Sbjct: 1649 KKSQKAHIFQALQYMRKLCNHPALI 1673
Score = 32.7 bits (73), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ 255
LIV PS+L +W E + ++ Y +A+ + S V++ SY++
Sbjct: 1422 LIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSKMKKSDVVVTSYDICRNDVD 1481
Query: 256 TIVDTEFDLLICDEKSLLK 274
+V +++ + DE ++K
Sbjct: 1482 ELVKIDWNYCVLDEGHVIK 1500
>sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2
Length = 1616
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 176/366 (48%), Gaps = 58/366 (15%)
Query: 342 QPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEG-- 399
+ DV+EEE +G + DV + L L+P+Q+QG+++L ASL G
Sbjct: 755 ESDVLEEE------VNGSKVRDVPLPPLLRGTLRPYQKQGLNWL-------ASLYNNGTN 801
Query: 400 AILADEMGLGKTLQCIALIWTLLRQ----GPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL 455
ILADEMGLGKT+Q I+L+ L + GP+ LIV P+S+ NW EFKK+
Sbjct: 802 GILADEMGLGKTIQTISLLAYLAAEHHIWGPH--------LIVVPTSVMLNWEMEFKKFA 853
Query: 456 GLTRMCPYHVNQKNKAED---YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHR 512
++ Y+ + + +A+ + V I SY++++ +Q+ + +I DE H
Sbjct: 854 PGFKVLTYYGSPQQRAQKRKGWNKPNAFHVCITSYQLVVHDHQSFKRRRWRYMILDEAHN 913
Query: 513 LKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDF---------ANPGVLGSLR 563
+KN +S + + N R+LL+GTPLQN+L E + L F A P +L
Sbjct: 914 IKNFRSARWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFLMPSSKVNQAMPDGFANLE 973
Query: 564 EFRKNFEEP---ILESRS---------PNSTEAQKSLGELRS--SQLAKRTAGFILRRTS 609
+F+ F P ILE S N Q+ E R+ S+L + ++LRR
Sbjct: 974 DFQTWFGRPVDKILEKTSNGTSSDVIDENDKTTQRMDEETRNTVSRLHQVLRPYLLRRLK 1033
Query: 610 DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDS--HLSVTHA---LRKICN 664
+ K E ++ CR + Q+ LY + + + S LS+ + LRK+CN
Sbjct: 1034 KDVEKQMPGKYEHIIYCRLSKRQRYLYDDFMSRAQTKETLASGNFLSIINCLMQLRKVCN 1093
Query: 665 HPGLVQ 670
HP L +
Sbjct: 1094 HPDLFE 1099
Score = 36.6 bits (83), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED---YVYSRVSPVLIISYEMLIR 252
LIV P+S+ NW EFKK+ ++ Y+ + + +A+ + V I SY++++
Sbjct: 834 LIVVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKPNAFHVCITSYQLVVH 893
Query: 253 AYQTIVDTEFDLLICDEKSLLK 274
+Q+ + +I DE +K
Sbjct: 894 DHQSFKRRRWRYMILDEAHNIK 915
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1
Length = 1703
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 160/313 (51%), Gaps = 25/313 (7%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
LK +Q +G+ ++ L + L G ILADEMGLGKT+Q I+L+ L Y M I
Sbjct: 766 TLKDYQIKGLQWM----VSLFNNHLNG-ILADEMGLGKTIQTISLLTYL-----YEMKNI 815
Query: 433 RK-VLIVTPSSLTSNWNDEFKKWLGLTRMCPYH--VNQKNKAEDYVYSRVSPVLIISYEM 489
R L++ P S SNW+ EF KW R + N++ + + + V++ ++E
Sbjct: 816 RGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEY 875
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKL-YELMTGLNIRKRILLSGTPLQNDLQEFF 548
+I+ + ++ +I DEGHR+KN +SKL L T + R++L+GTPLQN+L E +
Sbjct: 876 IIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELW 935
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRR- 607
L +F P + S++ F + F P + + E + L +L K F+LRR
Sbjct: 936 ALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRPFLLRRL 995
Query: 608 TSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVT---------HA 658
DV+ L + K E ++ C+ + LQQ +Y + ++Y ++ +
Sbjct: 996 KKDVEKELPD-KVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQ 1054
Query: 659 LRKICNHPGLVQQ 671
L+KICNHP + ++
Sbjct: 1055 LKKICNHPFVFEE 1067
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYH--VNQKNKAEDYVYSRVSPVLIISYEMLIRA 253
L++ P S SNW+ EF KW R + N++ + + + V++ ++E +I+
Sbjct: 820 LVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYIIKE 879
Query: 254 YQTIVDTEFDLLICDEKSLLK 274
+ ++ +I DE +K
Sbjct: 880 RALLSKVKWVHMIIDEGHRMK 900
>sp|Q6BGY8|INO80_DEBHA Putative DNA helicase INO80 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=INO80 PE=3 SV=2
Length = 1364
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 190/383 (49%), Gaps = 49/383 (12%)
Query: 320 INSHLSVTHALRK---ICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKP 376
+N+ +++ A K N P ++ PD EE ++ NP+ ++++ L LK
Sbjct: 513 VNAQIALEAAKTKAQAFDNDP--LKNPDTNGEEMNFQ-NPTLLGDINISQPDLLKCTLKE 569
Query: 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ----GPYGMPVI 432
+Q +G+++L +L + G ILADEMGLGKT+Q I+++ L GP+
Sbjct: 570 YQVKGLNWL----ANLYEQGING-ILADEMGLGKTVQSISVLAYLAETHNIWGPF----- 619
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--------EDYVYSRVSP--V 482
L+VTP+S NW E +++ ++ PY N K++ +++ Y + +P V
Sbjct: 620 ---LVVTPASTLHNWQQEISRFVPEFKVIPYWGNAKDRKVLRKFWDRKNFRYGKDAPFHV 676
Query: 483 LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542
L+ SY++++ ++ +I DE +K+ +S ++ + + R R+LL+GTP+QN
Sbjct: 677 LVTSYQLVVADAAYFQKMKWQYMILDEAQAIKSSQSSRWKSLLSFSCRNRLLLTGTPIQN 736
Query: 543 DLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602
+QE + L F P + S EF F + I ES + ++TE L E + +L
Sbjct: 737 SMQELWALLHFIMPSLFDSHDEFSDWFSKDI-ESHAQSNTE----LNEQQLRRLHVILKP 791
Query: 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLY------LRCVEYWDA--RASRDSHLS 654
F+LRR S L K E + C T Q+ Y + ++ D+ +S DS S
Sbjct: 792 FMLRRIKKNVQSELGDKLEIDVFCDLTHRQKKYYQMLTSQISIMDLLDSANNSSDDSAQS 851
Query: 655 VTH---ALRKICNHPGLVQQPDM 674
+ + RK+CNHP L ++ D+
Sbjct: 852 LMNLVMQFRKVCNHPDLFERADV 874
Score = 40.0 bits (92), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--------EDYVYSRVSP--VLI 244
L+VTP+S NW E +++ ++ PY N K++ +++ Y + +P VL+
Sbjct: 619 FLVVTPASTLHNWQQEISRFVPEFKVIPYWGNAKDRKVLRKFWDRKNFRYGKDAPFHVLV 678
Query: 245 ISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
SY++++ ++ +I DE +K
Sbjct: 679 TSYQLVVADAAYFQKMKWQYMILDEAQAIK 708
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,851,604
Number of Sequences: 539616
Number of extensions: 10834430
Number of successful extensions: 30960
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 29324
Number of HSP's gapped (non-prelim): 992
length of query: 680
length of database: 191,569,459
effective HSP length: 124
effective length of query: 556
effective length of database: 124,657,075
effective search space: 69309333700
effective search space used: 69309333700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)