Query psy12466
Match_columns 680
No_of_seqs 487 out of 3638
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:03:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0387|consensus 100.0 1.7E-60 3.8E-65 521.4 21.7 302 363-673 195-513 (923)
2 KOG0385|consensus 100.0 8E-58 1.7E-62 497.9 24.5 287 367-674 160-456 (971)
3 KOG0391|consensus 100.0 7.6E-56 1.6E-60 493.9 14.8 297 362-672 604-908 (1958)
4 KOG0392|consensus 100.0 1.9E-54 4.2E-59 488.6 22.2 311 359-674 961-1286(1549)
5 KOG0388|consensus 100.0 2.3E-53 5E-58 457.0 16.0 293 363-673 557-858 (1185)
6 KOG0389|consensus 100.0 1.4E-51 3.1E-56 450.8 20.2 287 372-672 398-698 (941)
7 KOG0384|consensus 100.0 1.2E-51 2.5E-56 468.6 20.0 278 372-675 369-661 (1373)
8 PLN03142 Probable chromatin-re 100.0 2.7E-50 5.8E-55 473.2 27.4 287 366-673 162-455 (1033)
9 KOG0390|consensus 100.0 9.3E-50 2E-54 449.1 28.7 319 354-673 219-547 (776)
10 KOG0386|consensus 100.0 2.8E-48 6E-53 433.8 12.5 291 370-672 391-692 (1157)
11 KOG1015|consensus 100.0 1.4E-46 3E-51 414.2 21.1 305 363-670 658-998 (1567)
12 PF00176 SNF2_N: SNF2 family N 100.0 5.2E-45 1.1E-49 384.4 27.8 279 377-669 1-299 (299)
13 KOG4439|consensus 100.0 7.9E-44 1.7E-48 385.3 15.3 291 365-676 317-674 (901)
14 KOG1016|consensus 100.0 3.3E-40 7.2E-45 357.7 18.6 306 362-672 243-610 (1387)
15 KOG1002|consensus 100.0 5.2E-40 1.1E-44 343.2 18.0 288 363-671 174-523 (791)
16 COG0553 HepA Superfamily II DN 100.0 5.5E-38 1.2E-42 377.7 18.8 294 368-672 333-661 (866)
17 KOG1000|consensus 100.0 7E-34 1.5E-38 298.0 17.1 253 365-643 190-446 (689)
18 KOG0383|consensus 100.0 1.7E-33 3.6E-38 315.4 5.9 278 372-673 294-597 (696)
19 PRK04914 ATP-dependent helicas 100.0 9.8E-30 2.1E-34 299.0 21.5 254 370-637 149-448 (956)
20 KOG1001|consensus 100.0 2.3E-29 5E-34 286.0 19.2 280 378-676 135-434 (674)
21 KOG0298|consensus 99.9 1.6E-24 3.5E-29 249.0 14.7 264 394-672 371-694 (1394)
22 KOG0387|consensus 99.9 1.4E-22 3E-27 224.0 15.0 108 190-297 253-373 (923)
23 KOG0390|consensus 99.9 1.1E-21 2.4E-26 222.3 12.2 146 167-316 227-428 (776)
24 TIGR00603 rad25 DNA repair hel 99.8 3.5E-20 7.5E-25 212.0 20.8 150 371-543 253-415 (732)
25 KOG0385|consensus 99.8 1.1E-20 2.4E-25 208.1 6.7 111 189-299 214-327 (971)
26 PLN03142 Probable chromatin-re 99.8 3.8E-19 8.2E-24 210.6 6.6 129 171-299 161-329 (1033)
27 KOG0392|consensus 99.8 5.9E-19 1.3E-23 202.0 6.0 105 194-298 1033-1137(1549)
28 KOG1002|consensus 99.7 2.8E-18 6E-23 180.9 8.3 138 160-299 165-354 (791)
29 KOG0389|consensus 99.7 1.9E-18 4E-23 191.4 6.4 115 192-309 448-569 (941)
30 KOG1016|consensus 99.7 2.5E-18 5.4E-23 188.4 7.2 161 135-299 214-472 (1387)
31 KOG1015|consensus 99.7 1.2E-18 2.7E-23 194.3 4.6 118 190-310 726-867 (1567)
32 KOG4439|consensus 99.7 8E-19 1.7E-23 191.9 2.8 132 166-298 312-500 (901)
33 KOG0391|consensus 99.7 1E-18 2.2E-23 197.9 2.0 104 194-297 667-773 (1958)
34 PF04851 ResIII: Type III rest 99.7 2.8E-16 6.1E-21 153.0 16.1 155 373-541 3-184 (184)
35 COG1061 SSL2 DNA or RNA helica 99.7 8.3E-16 1.8E-20 170.8 20.1 205 369-643 32-243 (442)
36 PRK13766 Hef nuclease; Provisi 99.6 5.3E-14 1.2E-18 167.8 22.3 165 373-555 15-187 (773)
37 KOG0388|consensus 99.6 9.1E-16 2E-20 167.6 3.7 129 170-298 558-732 (1185)
38 KOG0386|consensus 99.6 8.3E-16 1.8E-20 174.2 2.3 109 191-299 443-554 (1157)
39 PHA02558 uvsW UvsW helicase; P 99.6 4.3E-14 9.4E-19 159.9 16.2 145 372-542 113-262 (501)
40 cd00046 DEXDc DEAD-like helica 99.5 7.5E-14 1.6E-18 128.4 13.8 136 399-539 2-144 (144)
41 PF00176 SNF2_N: SNF2 family N 99.5 4.4E-15 9.6E-20 156.4 6.2 108 192-299 58-172 (299)
42 smart00487 DEXDc DEAD-like hel 99.5 8.1E-14 1.8E-18 136.2 14.7 158 372-542 7-173 (201)
43 KOG0384|consensus 99.5 5.1E-15 1.1E-19 170.9 5.7 108 191-299 419-535 (1373)
44 PRK11448 hsdR type I restricti 99.5 2E-13 4.3E-18 165.2 16.0 160 372-543 412-598 (1123)
45 TIGR00348 hsdR type I site-spe 99.4 8.6E-13 1.9E-17 153.7 15.4 161 372-542 237-405 (667)
46 KOG1123|consensus 99.4 1.2E-13 2.5E-18 146.7 7.1 187 325-542 262-461 (776)
47 KOG1000|consensus 99.4 1.8E-13 3.9E-18 145.2 6.4 137 170-312 190-359 (689)
48 PRK04914 ATP-dependent helicas 99.4 3.3E-13 7.2E-18 160.0 7.8 110 189-299 196-315 (956)
49 COG4096 HsdR Type I site-speci 99.4 1E-12 2.2E-17 148.4 10.3 175 365-558 157-350 (875)
50 COG1111 MPH1 ERCC4-like helica 99.4 4.3E-11 9.3E-16 128.7 21.3 162 373-552 15-184 (542)
51 cd00268 DEADc DEAD-box helicas 99.3 8.4E-11 1.8E-15 117.0 15.6 156 373-540 21-185 (203)
52 PF00270 DEAD: DEAD/DEAH box h 99.3 7.9E-11 1.7E-15 113.2 14.4 156 376-546 2-168 (169)
53 KOG1001|consensus 99.2 5.2E-12 1.1E-16 144.7 5.9 105 191-299 188-292 (674)
54 KOG0354|consensus 99.2 1E-10 2.3E-15 132.5 14.5 169 372-557 61-238 (746)
55 COG0553 HepA Superfamily II DN 99.2 5.1E-12 1.1E-16 152.6 3.1 108 192-299 390-510 (866)
56 TIGR00643 recG ATP-dependent D 99.2 1.3E-10 2.8E-15 135.1 14.4 158 372-544 234-401 (630)
57 PF13872 AAA_34: P-loop contai 99.2 2.1E-09 4.6E-14 110.9 19.4 245 364-638 26-302 (303)
58 PRK10917 ATP-dependent DNA hel 99.1 5.7E-10 1.2E-14 130.7 14.2 157 371-543 259-423 (681)
59 PRK11192 ATP-dependent RNA hel 99.1 1.4E-09 3E-14 121.4 16.7 167 373-549 23-198 (434)
60 TIGR00603 rad25 DNA repair hel 99.1 1.8E-10 4E-15 132.7 8.0 100 193-299 299-411 (732)
61 COG4889 Predicted helicase [Ge 99.1 4.1E-10 9E-15 126.5 9.7 159 366-539 154-350 (1518)
62 TIGR00614 recQ_fam ATP-depende 99.0 2E-09 4.2E-14 121.3 14.4 164 372-556 10-189 (470)
63 PRK11776 ATP-dependent RNA hel 99.0 3E-09 6.5E-14 119.6 15.5 154 373-540 26-189 (460)
64 PRK10590 ATP-dependent RNA hel 99.0 5.9E-09 1.3E-13 117.0 16.3 159 373-540 23-191 (456)
65 PRK10689 transcription-repair 99.0 4E-09 8.6E-14 128.7 15.0 157 372-544 599-763 (1147)
66 PRK02362 ski2-like helicase; P 99.0 8.2E-09 1.8E-13 122.5 17.2 158 373-551 23-191 (737)
67 TIGR00580 mfd transcription-re 99.0 5.7E-09 1.2E-13 124.7 15.8 157 373-545 451-615 (926)
68 COG1200 RecG RecG-like helicas 99.0 2.6E-09 5.7E-14 119.7 11.6 160 372-546 261-428 (677)
69 PRK00254 ski2-like helicase; P 99.0 1.1E-08 2.3E-13 121.2 17.5 160 372-551 22-189 (720)
70 PTZ00424 helicase 45; Provisio 99.0 9.1E-09 2E-13 113.5 15.1 155 373-540 50-212 (401)
71 PTZ00110 helicase; Provisional 99.0 9.5E-09 2.1E-13 117.6 15.6 158 373-539 152-318 (545)
72 PRK01172 ski2-like helicase; P 98.9 1.2E-08 2.6E-13 120.0 16.5 156 373-549 22-187 (674)
73 PRK11634 ATP-dependent RNA hel 98.9 1.5E-08 3.2E-13 117.5 16.2 153 373-539 28-190 (629)
74 TIGR01389 recQ ATP-dependent D 98.9 1.5E-08 3.3E-13 117.4 15.9 162 373-555 13-188 (591)
75 PRK13767 ATP-dependent helicas 98.9 2E-08 4.3E-13 120.8 17.2 166 373-549 32-225 (876)
76 PLN00206 DEAD-box ATP-dependen 98.9 1.9E-08 4.2E-13 114.6 15.9 160 372-540 142-311 (518)
77 PRK11057 ATP-dependent DNA hel 98.9 1.6E-08 3.5E-13 117.2 15.5 162 373-555 25-200 (607)
78 PRK04837 ATP-dependent RNA hel 98.9 1.8E-08 4E-13 112.0 15.1 159 373-540 30-201 (423)
79 PRK04537 ATP-dependent RNA hel 98.9 2.7E-08 5.8E-13 114.4 16.4 160 373-541 31-204 (572)
80 KOG0298|consensus 98.9 3.8E-10 8.2E-15 131.9 1.0 108 191-298 419-549 (1394)
81 PRK01297 ATP-dependent RNA hel 98.9 3.5E-08 7.6E-13 111.4 15.4 159 373-540 109-281 (475)
82 PRK09401 reverse gyrase; Revie 98.8 4.5E-08 9.7E-13 119.9 16.2 128 371-514 78-214 (1176)
83 COG1204 Superfamily II helicas 98.8 2.8E-08 6E-13 116.6 13.2 159 373-550 31-199 (766)
84 PRK05580 primosome assembly pr 98.8 1E-07 2.2E-12 111.7 16.0 153 372-543 143-308 (679)
85 TIGR03817 DECH_helic helicase/ 98.8 8.9E-08 1.9E-12 113.1 15.5 157 373-547 36-210 (742)
86 COG1205 Distinct helicase fami 98.7 8.2E-08 1.8E-12 114.1 14.0 153 372-539 69-242 (851)
87 COG0610 Type I site-specific r 98.7 7.7E-08 1.7E-12 116.0 13.5 162 377-546 252-420 (962)
88 TIGR03158 cas3_cyano CRISPR-as 98.7 2.6E-07 5.7E-12 100.3 16.0 148 377-541 1-193 (357)
89 KOG0383|consensus 98.7 2E-08 4.3E-13 114.4 6.1 106 194-299 347-474 (696)
90 COG1197 Mfd Transcription-repa 98.6 4.2E-07 9.1E-12 107.7 12.9 228 373-633 594-844 (1139)
91 PLN03137 ATP-dependent DNA hel 98.6 4.8E-07 1E-11 107.8 13.0 163 372-555 459-642 (1195)
92 TIGR01587 cas3_core CRISPR-ass 98.5 5.7E-07 1.2E-11 97.7 12.7 135 400-540 2-166 (358)
93 TIGR00595 priA primosomal prot 98.5 6.4E-07 1.4E-11 101.4 13.1 127 402-541 2-141 (505)
94 COG1201 Lhr Lhr-like helicases 98.5 1.7E-06 3.6E-11 101.0 15.1 172 372-557 21-206 (814)
95 PF07652 Flavi_DEAD: Flaviviru 98.5 2.2E-06 4.8E-11 79.3 12.8 130 397-542 4-139 (148)
96 TIGR01054 rgy reverse gyrase. 98.5 1.1E-06 2.4E-11 107.9 13.8 126 373-515 78-213 (1171)
97 PRK15483 type III restriction- 98.4 1.5E-06 3.2E-11 102.7 13.0 161 375-541 8-240 (986)
98 cd00046 DEXDc DEAD-like helica 98.4 4.1E-07 8.9E-12 83.2 6.1 107 192-298 30-143 (144)
99 KOG0331|consensus 98.4 3E-06 6.5E-11 93.9 12.6 157 374-539 114-281 (519)
100 TIGR03714 secA2 accessory Sec 98.3 4.2E-06 9.2E-11 97.2 13.7 150 373-551 68-232 (762)
101 COG4098 comFA Superfamily II D 98.3 2.1E-05 4.6E-10 81.5 15.2 148 371-542 95-246 (441)
102 PRK14701 reverse gyrase; Provi 98.2 6.1E-06 1.3E-10 103.9 12.8 126 373-514 79-213 (1638)
103 PRK09694 helicase Cas3; Provis 98.2 1.3E-05 2.8E-10 95.5 14.6 163 372-548 285-489 (878)
104 TIGR02621 cas3_GSU0051 CRISPR- 98.2 7.7E-06 1.7E-10 96.0 12.2 156 374-541 16-217 (844)
105 PRK09751 putative ATP-dependen 98.2 1.4E-05 3.1E-10 99.1 14.9 145 403-549 2-177 (1490)
106 PHA02653 RNA helicase NPH-II; 98.2 1.2E-05 2.6E-10 93.4 12.6 159 369-540 156-332 (675)
107 KOG0350|consensus 98.1 7.2E-06 1.6E-10 88.5 9.0 143 371-517 157-311 (620)
108 KOG0952|consensus 98.1 1.2E-05 2.7E-10 93.4 11.5 172 391-571 120-312 (1230)
109 KOG1123|consensus 98.1 9.3E-06 2E-10 87.5 8.4 98 192-297 345-456 (776)
110 KOG0330|consensus 98.1 1.6E-05 3.5E-10 83.5 9.7 154 374-541 84-247 (476)
111 COG1061 SSL2 DNA or RNA helica 98.1 5.1E-06 1.1E-10 92.8 6.3 98 193-299 81-183 (442)
112 smart00487 DEXDc DEAD-like hel 98.0 3.6E-06 7.7E-11 81.9 4.2 108 192-299 54-170 (201)
113 PF04851 ResIII: Type III rest 98.0 5E-06 1.1E-10 80.6 4.5 104 194-299 52-182 (184)
114 COG1202 Superfamily II helicas 98.0 3.6E-05 7.9E-10 84.5 10.6 178 359-553 194-394 (830)
115 KOG0338|consensus 98.0 3.2E-05 6.9E-10 83.8 10.0 147 400-550 221-378 (691)
116 PHA02558 uvsW UvsW helicase; P 98.0 1.1E-05 2.3E-10 91.8 6.6 96 194-299 160-259 (501)
117 KOG1513|consensus 97.9 0.00015 3.4E-09 82.0 15.1 257 363-647 254-545 (1300)
118 PRK13766 Hef nuclease; Provisi 97.9 1.1E-05 2.5E-10 96.6 6.5 107 192-299 58-172 (773)
119 COG0513 SrmB Superfamily II DN 97.9 0.00023 4.9E-09 81.2 15.7 162 374-548 52-223 (513)
120 COG0514 RecQ Superfamily II DN 97.9 9.6E-05 2.1E-09 83.6 11.6 165 373-558 17-195 (590)
121 COG1110 Reverse gyrase [DNA re 97.8 0.00021 4.5E-09 83.6 12.8 125 373-513 82-215 (1187)
122 COG4581 Superfamily II RNA hel 97.7 0.00032 6.9E-09 83.7 12.5 158 370-552 116-281 (1041)
123 PF13086 AAA_11: AAA domain; P 97.6 0.00026 5.7E-09 71.2 10.2 72 373-453 1-75 (236)
124 PRK09200 preprotein translocas 97.6 0.00033 7.1E-09 82.4 11.8 122 373-513 76-211 (790)
125 KOG0335|consensus 97.6 0.00055 1.2E-08 75.1 12.0 159 372-539 95-272 (482)
126 TIGR00963 secA preprotein tran 97.6 0.00031 6.6E-09 81.6 10.3 123 373-514 54-189 (745)
127 TIGR01407 dinG_rel DnaQ family 97.5 0.0008 1.7E-08 81.4 13.4 66 372-449 244-310 (850)
128 smart00488 DEXDc2 DEAD-like he 97.5 0.001 2.2E-08 70.2 12.4 75 374-454 9-84 (289)
129 smart00489 DEXDc3 DEAD-like he 97.5 0.001 2.2E-08 70.2 12.4 75 374-454 9-84 (289)
130 TIGR01970 DEAH_box_HrpB ATP-de 97.5 0.00091 2E-08 79.8 13.0 136 396-544 16-161 (819)
131 PRK11664 ATP-dependent RNA hel 97.5 0.00081 1.8E-08 80.3 12.6 135 397-544 20-164 (812)
132 KOG0947|consensus 97.5 0.00047 1E-08 79.9 9.8 143 372-539 296-444 (1248)
133 KOG0342|consensus 97.5 0.001 2.3E-08 72.2 11.8 151 396-548 118-279 (543)
134 TIGR03117 cas_csf4 CRISPR-asso 97.4 0.0018 3.9E-08 74.8 14.3 68 378-455 2-70 (636)
135 PRK12898 secA preprotein trans 97.4 0.0015 3.4E-08 75.3 13.4 120 373-513 103-254 (656)
136 PRK12899 secA preprotein trans 97.4 0.00084 1.8E-08 79.3 11.3 139 374-542 93-245 (970)
137 KOG0345|consensus 97.4 0.0021 4.6E-08 69.5 13.0 135 372-515 27-171 (567)
138 PF02562 PhoH: PhoH-like prote 97.4 0.00067 1.5E-08 67.5 8.6 145 374-545 5-161 (205)
139 KOG0353|consensus 97.3 0.0025 5.4E-08 66.9 12.2 184 370-574 91-312 (695)
140 KOG0348|consensus 97.3 0.0013 2.8E-08 72.2 10.4 156 376-540 162-342 (708)
141 COG1203 CRISPR-associated heli 97.3 0.00098 2.1E-08 79.2 10.6 167 372-547 194-388 (733)
142 KOG0343|consensus 97.3 0.0011 2.3E-08 73.0 9.3 163 374-548 92-264 (758)
143 PF13604 AAA_30: AAA domain; P 97.3 0.0047 1E-07 61.3 13.3 133 373-544 1-135 (196)
144 COG1198 PriA Primosomal protei 97.3 0.0032 7E-08 73.5 13.7 151 372-540 197-360 (730)
145 PRK11448 hsdR type I restricti 97.2 0.00047 1E-08 84.7 7.2 80 191-273 462-552 (1123)
146 COG3587 Restriction endonuclea 97.2 0.002 4.3E-08 74.3 11.4 137 396-539 73-242 (985)
147 PF07517 SecA_DEAD: SecA DEAD- 97.2 0.0045 9.7E-08 64.1 13.2 121 372-513 76-209 (266)
148 PF13401 AAA_22: AAA domain; P 97.2 0.00073 1.6E-08 61.8 6.7 119 397-539 4-125 (131)
149 PRK10536 hypothetical protein; 97.2 0.0016 3.4E-08 66.7 9.5 146 374-544 60-217 (262)
150 KOG0339|consensus 97.2 0.0034 7.3E-08 68.5 12.2 136 403-539 266-411 (731)
151 KOG0951|consensus 97.1 0.0017 3.7E-08 77.3 9.9 170 377-549 305-492 (1674)
152 KOG0328|consensus 97.1 0.0015 3.2E-08 66.4 7.8 164 377-558 53-225 (400)
153 TIGR00604 rad3 DNA repair heli 97.1 0.0027 5.8E-08 75.4 11.4 72 373-453 10-82 (705)
154 PRK14873 primosome assembly pr 97.1 0.0021 4.6E-08 74.9 9.9 123 406-540 169-304 (665)
155 KOG1803|consensus 97.0 0.0026 5.7E-08 71.0 9.5 68 368-450 180-248 (649)
156 PF10382 DUF2439: Protein of u 97.0 0.00092 2E-08 56.6 4.7 44 60-104 3-48 (83)
157 PF09848 DUF2075: Uncharacteri 97.0 0.003 6.5E-08 68.6 9.4 88 400-515 4-97 (352)
158 PRK10689 transcription-repair 96.9 0.011 2.4E-07 73.2 14.9 76 434-513 811-891 (1147)
159 KOG0948|consensus 96.9 0.0024 5.2E-08 72.5 8.2 142 372-539 128-276 (1041)
160 KOG0347|consensus 96.9 0.0025 5.4E-08 70.2 8.0 139 400-539 222-386 (731)
161 PRK11131 ATP-dependent RNA hel 96.9 0.0061 1.3E-07 75.1 12.1 130 397-540 89-229 (1294)
162 TIGR00348 hsdR type I site-spe 96.9 0.0016 3.5E-08 76.6 6.9 106 191-301 292-404 (667)
163 PRK13104 secA preprotein trans 96.9 0.0045 9.7E-08 73.3 10.4 106 398-513 96-214 (896)
164 cd00268 DEADc DEAD-box helicas 96.7 0.0037 8E-08 61.9 7.0 85 192-276 69-158 (203)
165 COG0556 UvrB Helicase subunit 96.6 0.011 2.4E-07 65.2 10.1 72 377-462 16-88 (663)
166 TIGR01967 DEAH_box_HrpA ATP-de 96.6 0.013 2.7E-07 72.6 11.4 136 397-541 82-223 (1283)
167 PF00270 DEAD: DEAD/DEAH box h 96.5 0.0044 9.5E-08 59.1 6.1 83 194-276 46-134 (169)
168 PRK11192 ATP-dependent RNA hel 96.5 0.0051 1.1E-07 68.7 7.2 83 193-275 74-161 (434)
169 PRK13103 secA preprotein trans 96.5 0.009 1.9E-07 70.7 9.0 106 398-513 96-214 (913)
170 PRK04296 thymidine kinase; Pro 96.4 0.023 5E-07 56.1 10.5 34 400-440 5-38 (190)
171 KOG0346|consensus 96.4 0.019 4E-07 62.0 10.0 154 377-539 45-211 (569)
172 PRK12904 preprotein translocas 96.4 0.014 3E-07 69.0 10.1 119 374-513 82-213 (830)
173 PRK10590 ATP-dependent RNA hel 96.4 0.0058 1.3E-07 68.8 6.8 84 193-276 76-164 (456)
174 TIGR00376 DNA helicase, putati 96.4 0.015 3.2E-07 68.0 10.3 67 372-453 156-223 (637)
175 PRK11776 ATP-dependent RNA hel 96.4 0.0056 1.2E-07 69.0 6.5 83 194-276 74-162 (460)
176 KOG1802|consensus 96.3 0.0099 2.1E-07 66.9 7.8 68 372-454 409-477 (935)
177 PRK04837 ATP-dependent RNA hel 96.3 0.0079 1.7E-07 67.0 6.9 84 193-276 84-172 (423)
178 PRK13107 preprotein translocas 96.2 0.019 4E-07 68.1 9.9 132 398-552 96-240 (908)
179 PRK07246 bifunctional ATP-depe 96.2 0.042 9.1E-07 66.2 13.3 68 373-453 245-314 (820)
180 PRK12326 preprotein translocas 96.2 0.027 5.9E-07 65.2 10.8 134 374-539 79-225 (764)
181 COG1205 Distinct helicase fami 96.2 0.013 2.7E-07 70.6 8.4 97 193-290 116-225 (851)
182 PF12340 DUF3638: Protein of u 96.2 0.043 9.4E-07 55.3 10.9 109 372-492 22-143 (229)
183 KOG0340|consensus 96.1 0.023 5E-07 59.8 8.9 151 375-539 31-194 (442)
184 PRK11634 ATP-dependent RNA hel 96.1 0.01 2.2E-07 69.4 7.1 84 193-276 75-164 (629)
185 PRK08074 bifunctional ATP-depe 96.1 0.063 1.4E-06 65.7 13.9 63 373-446 257-320 (928)
186 TIGR01447 recD exodeoxyribonuc 95.9 0.034 7.4E-07 64.3 10.1 145 376-545 148-301 (586)
187 cd00009 AAA The AAA+ (ATPases 95.9 0.11 2.4E-06 47.2 11.9 108 396-542 18-132 (151)
188 PRK09401 reverse gyrase; Revie 95.9 0.016 3.5E-07 72.0 7.5 83 193-275 124-215 (1176)
189 KOG0351|consensus 95.9 0.018 4E-07 69.2 7.7 168 372-560 263-451 (941)
190 PTZ00110 helicase; Provisional 95.8 0.013 2.8E-07 67.4 6.2 84 193-276 204-292 (545)
191 TIGR01448 recD_rel helicase, p 95.8 0.079 1.7E-06 63.0 12.8 135 371-542 321-455 (720)
192 PRK04537 ATP-dependent RNA hel 95.8 0.016 3.5E-07 67.1 6.5 83 193-275 85-173 (572)
193 PRK02362 ski2-like helicase; P 95.7 0.026 5.6E-07 67.5 8.4 81 193-276 68-152 (737)
194 PF07652 Flavi_DEAD: Flaviviru 95.7 0.049 1.1E-06 50.8 8.2 73 193-273 34-107 (148)
195 smart00382 AAA ATPases associa 95.7 0.056 1.2E-06 48.7 8.7 113 398-539 3-125 (148)
196 PRK01297 ATP-dependent RNA hel 95.5 0.027 5.8E-07 63.8 7.1 84 193-276 163-252 (475)
197 KOG0334|consensus 95.5 0.039 8.5E-07 65.4 8.4 159 372-540 386-557 (997)
198 KOG0336|consensus 95.5 0.069 1.5E-06 57.1 9.3 150 396-546 256-414 (629)
199 PRK07003 DNA polymerase III su 95.5 0.29 6.2E-06 57.5 15.0 146 377-551 20-170 (830)
200 KOG0352|consensus 95.4 0.11 2.5E-06 55.9 10.6 161 376-558 23-205 (641)
201 PRK11747 dinG ATP-dependent DN 95.4 0.081 1.7E-06 62.7 10.6 36 479-514 219-259 (697)
202 TIGR00614 recQ_fam ATP-depende 95.4 0.028 6.2E-07 63.5 6.5 82 194-277 53-143 (470)
203 KOG0333|consensus 95.3 0.056 1.2E-06 59.6 8.1 130 375-513 269-408 (673)
204 PRK10875 recD exonuclease V su 95.2 0.083 1.8E-06 61.4 10.0 144 375-544 154-306 (615)
205 KOG1805|consensus 95.2 0.14 3.1E-06 60.4 11.6 147 372-541 668-831 (1100)
206 PRK12906 secA preprotein trans 95.2 0.056 1.2E-06 63.8 8.4 120 373-513 80-212 (796)
207 PLN00206 DEAD-box ATP-dependen 95.2 0.042 9.1E-07 62.9 7.3 84 193-276 197-285 (518)
208 PRK12723 flagellar biosynthesi 95.2 0.36 7.9E-06 52.9 14.1 182 398-607 175-374 (388)
209 PRK01172 ski2-like helicase; P 95.1 0.056 1.2E-06 64.0 8.2 81 193-276 66-150 (674)
210 PRK00254 ski2-like helicase; P 95.1 0.058 1.3E-06 64.3 8.3 81 193-276 69-153 (720)
211 TIGR00643 recG ATP-dependent D 95.1 0.031 6.7E-07 65.6 5.8 77 194-273 286-369 (630)
212 KOG0949|consensus 95.0 0.12 2.7E-06 60.8 10.1 149 396-552 525-682 (1330)
213 TIGR01054 rgy reverse gyrase. 95.0 0.042 9.1E-07 68.4 6.8 82 193-275 122-213 (1171)
214 KOG4284|consensus 94.9 0.061 1.3E-06 60.7 7.2 143 398-547 63-216 (980)
215 PF00448 SRP54: SRP54-type pro 94.9 0.21 4.6E-06 49.5 10.5 135 400-557 4-143 (196)
216 PLN03025 replication factor C 94.9 0.68 1.5E-05 49.5 15.1 59 501-559 99-158 (319)
217 KOG0950|consensus 94.8 0.26 5.6E-06 58.3 12.3 142 396-548 239-396 (1008)
218 KOG0341|consensus 94.8 0.033 7.2E-07 59.1 4.7 141 399-539 209-367 (610)
219 PF05621 TniB: Bacterial TniB 94.8 0.52 1.1E-05 49.5 13.4 138 380-539 44-189 (302)
220 TIGR02881 spore_V_K stage V sp 94.8 0.16 3.6E-06 52.6 9.8 29 397-425 42-70 (261)
221 PTZ00424 helicase 45; Provisio 94.7 0.055 1.2E-06 59.6 6.5 84 192-275 96-184 (401)
222 PF02399 Herpes_ori_bp: Origin 94.7 0.13 2.9E-06 60.3 9.7 128 400-539 52-190 (824)
223 PRK14960 DNA polymerase III su 94.7 0.55 1.2E-05 54.5 14.3 44 378-423 20-63 (702)
224 KOG1132|consensus 94.6 0.19 4.1E-06 58.9 10.3 84 370-458 18-137 (945)
225 COG1875 NYN ribonuclease and A 94.6 0.081 1.7E-06 56.3 6.7 40 500-541 350-389 (436)
226 PRK12902 secA preprotein trans 94.5 0.18 3.9E-06 59.8 10.2 106 398-513 99-217 (939)
227 TIGR00595 priA primosomal prot 94.4 0.083 1.8E-06 60.2 7.1 76 193-274 26-106 (505)
228 COG1204 Superfamily II helicas 94.4 0.08 1.7E-06 63.0 7.1 81 193-276 77-161 (766)
229 PRK12323 DNA polymerase III su 94.3 0.77 1.7E-05 53.3 14.4 26 399-424 40-65 (700)
230 PRK14958 DNA polymerase III su 94.3 1.3 2.8E-05 50.6 16.3 45 377-424 20-65 (509)
231 PRK08116 hypothetical protein; 94.3 1.5 3.2E-05 45.8 15.5 29 397-425 114-142 (268)
232 KOG0925|consensus 94.3 0.078 1.7E-06 58.0 6.0 137 396-554 61-216 (699)
233 COG4889 Predicted helicase [Ge 94.2 0.12 2.7E-06 60.1 7.8 32 242-273 283-316 (1518)
234 TIGR03420 DnaA_homol_Hda DnaA 94.2 0.42 9E-06 48.0 11.0 44 378-424 22-65 (226)
235 KOG0922|consensus 94.2 0.16 3.6E-06 57.7 8.5 145 396-553 65-219 (674)
236 KOG0329|consensus 94.1 0.14 3.1E-06 51.6 7.0 133 401-539 83-227 (387)
237 KOG0926|consensus 94.1 0.25 5.4E-06 57.2 9.7 141 396-546 270-431 (1172)
238 PRK14974 cell division protein 94.1 0.9 1.9E-05 48.9 13.7 120 398-544 141-269 (336)
239 PRK08084 DNA replication initi 94.1 0.62 1.3E-05 47.6 12.0 46 377-425 28-73 (235)
240 KOG0344|consensus 94.1 0.091 2E-06 58.8 6.2 133 375-516 160-303 (593)
241 PRK13767 ATP-dependent helicas 94.1 0.084 1.8E-06 64.3 6.5 82 193-276 85-187 (876)
242 cd01121 Sms Sms (bacterial rad 94.0 0.6 1.3E-05 51.0 12.5 90 397-514 82-171 (372)
243 PRK07994 DNA polymerase III su 93.9 1 2.2E-05 52.6 14.6 44 378-424 21-65 (647)
244 CHL00122 secA preprotein trans 93.8 0.18 3.9E-06 59.8 8.3 119 374-513 77-208 (870)
245 COG4096 HsdR Type I site-speci 93.8 0.097 2.1E-06 61.0 6.0 98 189-296 212-317 (875)
246 PRK07952 DNA replication prote 93.8 0.76 1.7E-05 47.2 12.0 66 376-453 79-144 (244)
247 PF11496 HDA2-3: Class II hist 93.8 0.11 2.4E-06 54.9 5.9 57 620-676 4-80 (297)
248 PRK11889 flhF flagellar biosyn 93.7 1.1 2.4E-05 49.0 13.4 129 398-557 242-380 (436)
249 PRK14949 DNA polymerase III su 93.6 1.5 3.2E-05 52.7 15.4 27 398-424 38-65 (944)
250 TIGR01389 recQ ATP-dependent D 93.6 0.14 3.1E-06 59.6 7.1 81 194-276 55-142 (591)
251 TIGR03817 DECH_helic helicase/ 93.6 0.2 4.4E-06 59.8 8.4 80 193-275 82-171 (742)
252 PRK14956 DNA polymerase III su 93.6 1.3 2.7E-05 49.9 14.0 46 377-424 22-67 (484)
253 PRK10917 ATP-dependent DNA hel 93.5 0.083 1.8E-06 62.5 5.0 77 194-273 312-395 (681)
254 PRK06526 transposase; Provisio 93.5 0.47 1E-05 49.1 9.9 30 396-425 97-126 (254)
255 PRK11057 ATP-dependent DNA hel 93.4 0.14 3.1E-06 59.7 6.7 82 193-276 66-154 (607)
256 TIGR02880 cbbX_cfxQ probable R 93.4 0.32 6.9E-06 51.2 8.7 29 397-425 58-86 (284)
257 PRK05703 flhF flagellar biosyn 93.2 1.3 2.8E-05 49.3 13.5 132 398-557 222-360 (424)
258 KOG1131|consensus 93.2 0.72 1.6E-05 51.2 10.9 70 374-452 17-88 (755)
259 KOG0337|consensus 93.2 0.17 3.7E-06 54.6 6.1 131 404-539 65-205 (529)
260 KOG0924|consensus 93.0 0.25 5.4E-06 56.3 7.3 148 396-558 370-530 (1042)
261 TIGR03158 cas3_cyano CRISPR-as 92.9 0.35 7.6E-06 52.6 8.5 83 194-276 41-160 (357)
262 PRK14701 reverse gyrase; Provi 92.9 0.2 4.3E-06 64.2 7.4 83 193-275 123-214 (1638)
263 KOG0326|consensus 92.9 0.24 5.3E-06 51.6 6.6 135 399-539 123-268 (459)
264 PRK05580 primosome assembly pr 92.9 0.22 4.8E-06 58.9 7.3 76 193-274 191-271 (679)
265 KOG0989|consensus 92.9 0.37 8.1E-06 50.3 7.9 44 377-423 40-83 (346)
266 PHA02533 17 large terminase pr 92.9 0.74 1.6E-05 52.7 11.2 153 373-549 59-220 (534)
267 COG1111 MPH1 ERCC4-like helica 92.8 0.083 1.8E-06 58.3 3.3 111 194-305 60-175 (542)
268 PRK05642 DNA replication initi 92.8 1.3 2.8E-05 45.2 11.9 27 398-424 46-72 (234)
269 CHL00181 cbbX CbbX; Provisiona 92.8 0.49 1.1E-05 49.9 9.0 28 398-425 60-87 (287)
270 TIGR02768 TraA_Ti Ti-type conj 92.8 0.85 1.8E-05 54.6 12.0 125 372-542 351-479 (744)
271 PRK06835 DNA replication prote 92.7 1 2.3E-05 48.3 11.5 51 374-425 161-211 (329)
272 PRK14964 DNA polymerase III su 92.7 3.5 7.6E-05 46.7 16.0 45 378-424 18-62 (491)
273 cd01124 KaiC KaiC is a circadi 92.6 0.32 7E-06 47.2 7.0 48 400-454 2-49 (187)
274 COG1484 DnaC DNA replication p 92.6 0.78 1.7E-05 47.5 10.0 50 396-452 104-153 (254)
275 PRK12903 secA preprotein trans 92.5 0.65 1.4E-05 55.1 10.1 119 374-513 79-210 (925)
276 PRK09112 DNA polymerase III su 92.5 0.88 1.9E-05 49.4 10.6 45 378-424 28-72 (351)
277 TIGR01587 cas3_core CRISPR-ass 92.4 0.25 5.4E-06 53.6 6.5 83 192-275 29-138 (358)
278 TIGR03015 pepcterm_ATPase puta 92.4 0.57 1.2E-05 48.4 8.9 42 377-422 27-68 (269)
279 PRK12900 secA preprotein trans 92.4 0.62 1.3E-05 56.1 9.9 141 375-548 140-293 (1025)
280 PRK07764 DNA polymerase III su 92.4 2.1 4.6E-05 51.6 14.5 25 399-423 39-63 (824)
281 COG0464 SpoVK ATPases of the A 92.4 0.43 9.4E-06 54.3 8.5 98 373-515 249-349 (494)
282 COG1643 HrpA HrpA-like helicas 92.2 0.5 1.1E-05 56.5 9.0 141 396-550 64-216 (845)
283 KOG0991|consensus 92.2 0.2 4.4E-06 50.2 4.8 128 395-561 46-174 (333)
284 KOG0920|consensus 92.2 1.5 3.1E-05 52.8 12.6 163 397-570 188-362 (924)
285 PRK00149 dnaA chromosomal repl 92.2 1.4 3.1E-05 49.5 12.3 101 398-539 149-253 (450)
286 TIGR02928 orc1/cdc6 family rep 92.1 3 6.5E-05 45.2 14.4 48 375-424 20-67 (365)
287 PRK14961 DNA polymerase III su 92.0 1.8 4E-05 47.2 12.6 45 377-423 20-64 (363)
288 KOG0350|consensus 91.8 0.27 5.8E-06 54.2 5.5 85 193-277 216-311 (620)
289 PRK08181 transposase; Validate 91.8 1.6 3.5E-05 45.5 11.2 47 374-425 88-134 (269)
290 PRK08691 DNA polymerase III su 91.7 4.9 0.00011 47.2 16.0 46 377-424 20-65 (709)
291 PF05876 Terminase_GpA: Phage 91.7 0.39 8.4E-06 55.4 7.2 166 368-550 11-190 (557)
292 PRK14951 DNA polymerase III su 91.6 3.4 7.3E-05 48.2 14.7 45 378-425 21-66 (618)
293 TIGR00362 DnaA chromosomal rep 91.5 1.8 4E-05 47.9 12.1 28 398-425 137-164 (405)
294 PRK05707 DNA polymerase III su 91.4 1.4 3E-05 47.4 10.6 48 374-426 4-51 (328)
295 PF13177 DNA_pol3_delta2: DNA 91.4 3.3 7.2E-05 39.6 12.3 138 378-542 2-144 (162)
296 PF01695 IstB_IS21: IstB-like 91.3 0.98 2.1E-05 44.0 8.6 31 395-425 45-75 (178)
297 PRK08727 hypothetical protein; 91.2 1.2 2.6E-05 45.4 9.5 28 398-425 42-69 (233)
298 KOG0780|consensus 91.2 0.89 1.9E-05 48.9 8.5 98 400-519 104-201 (483)
299 KOG0734|consensus 91.2 1.7 3.7E-05 48.7 10.9 131 380-560 318-463 (752)
300 PRK11823 DNA repair protein Ra 91.1 2.1 4.6E-05 48.1 12.1 91 397-515 80-170 (446)
301 TIGR02562 cas3_yersinia CRISPR 91.1 6.5 0.00014 48.0 16.5 71 479-549 562-644 (1110)
302 PF06733 DEAD_2: DEAD_2; Inte 91.1 0.21 4.4E-06 48.5 3.6 38 478-515 118-159 (174)
303 PHA02544 44 clamp loader, smal 91.1 4.1 8.9E-05 43.2 13.9 51 501-551 100-152 (316)
304 cd03115 SRP The signal recogni 91.1 6.7 0.00015 37.6 14.2 26 400-425 3-28 (173)
305 PRK14087 dnaA chromosomal repl 91.1 2.4 5.2E-05 47.7 12.5 103 397-538 141-247 (450)
306 PRK09751 putative ATP-dependen 91.0 0.51 1.1E-05 59.8 7.7 82 193-276 38-139 (1490)
307 PRK12901 secA preprotein trans 91.0 1 2.2E-05 54.4 9.7 132 398-551 183-328 (1112)
308 PF13245 AAA_19: Part of AAA d 90.9 0.79 1.7E-05 38.0 6.4 52 397-451 10-62 (76)
309 cd01120 RecA-like_NTPases RecA 90.9 3.6 7.8E-05 38.2 12.0 34 401-441 3-36 (165)
310 PRK06893 DNA replication initi 90.9 2.9 6.3E-05 42.4 11.9 28 398-425 40-67 (229)
311 PRK09111 DNA polymerase III su 90.8 3.6 7.7E-05 47.9 13.9 47 377-425 28-74 (598)
312 TIGR00580 mfd transcription-re 90.8 0.44 9.6E-06 58.0 6.8 76 434-513 662-742 (926)
313 PRK06645 DNA polymerase III su 90.7 2.2 4.8E-05 48.5 11.9 46 377-424 25-70 (507)
314 COG2256 MGS1 ATPase related to 90.6 0.83 1.8E-05 49.5 7.7 26 395-420 46-71 (436)
315 PRK14955 DNA polymerase III su 90.6 8.7 0.00019 42.5 16.2 46 377-424 20-65 (397)
316 PRK00771 signal recognition pa 90.5 4.2 9.1E-05 45.5 13.6 29 397-425 95-123 (437)
317 PRK12377 putative replication 90.5 2.2 4.8E-05 43.9 10.7 29 397-425 101-129 (248)
318 TIGR00631 uvrb excinuclease AB 90.3 0.85 1.8E-05 53.6 8.4 74 376-463 12-86 (655)
319 PRK14962 DNA polymerase III su 90.3 2.5 5.4E-05 47.8 11.7 26 399-424 38-63 (472)
320 TIGR03346 chaperone_ClpB ATP-d 90.2 1.8 4E-05 52.7 11.4 43 378-423 178-220 (852)
321 COG3421 Uncharacterized protei 90.2 0.69 1.5E-05 52.2 6.9 104 404-514 4-125 (812)
322 PTZ00112 origin recognition co 90.2 2.4 5.1E-05 50.8 11.5 47 375-423 760-807 (1164)
323 PRK14965 DNA polymerase III su 90.1 9.4 0.0002 44.4 16.5 45 377-424 20-65 (576)
324 TIGR03345 VI_ClpV1 type VI sec 90.0 2.4 5.3E-05 51.5 12.1 43 378-423 192-234 (852)
325 PRK14952 DNA polymerase III su 90.0 3.5 7.5E-05 47.8 12.8 44 377-423 17-61 (584)
326 PF00004 AAA: ATPase family as 89.9 1.1 2.5E-05 40.3 7.3 21 401-421 2-22 (132)
327 PRK13889 conjugal transfer rel 89.9 1.6 3.5E-05 53.4 10.4 129 373-546 346-477 (988)
328 PRK12422 chromosomal replicati 89.7 2.4 5.3E-05 47.5 11.0 28 398-425 142-169 (445)
329 KOG0354|consensus 89.7 0.81 1.8E-05 53.4 7.3 81 194-274 108-192 (746)
330 PRK12402 replication factor C 89.7 2 4.4E-05 45.8 10.2 44 378-424 20-63 (337)
331 PRK08451 DNA polymerase III su 89.7 10 0.00022 43.4 16.1 45 377-424 18-63 (535)
332 PRK05563 DNA polymerase III su 89.6 11 0.00023 43.7 16.5 45 378-424 21-65 (559)
333 PRK14959 DNA polymerase III su 89.6 11 0.00024 44.0 16.3 27 397-423 38-64 (624)
334 CHL00095 clpC Clp protease ATP 89.5 2.3 5E-05 51.6 11.4 43 378-423 184-226 (821)
335 KOG0332|consensus 89.5 1.3 2.9E-05 47.3 8.0 140 395-540 127-275 (477)
336 PRK10865 protein disaggregatio 89.4 2.4 5.2E-05 51.7 11.4 43 378-423 183-225 (857)
337 COG1066 Sms Predicted ATP-depe 89.4 2.9 6.3E-05 45.7 10.7 89 398-515 94-182 (456)
338 PRK14088 dnaA chromosomal repl 89.4 3.6 7.8E-05 46.2 12.1 29 398-426 131-159 (440)
339 PRK06921 hypothetical protein; 89.3 3 6.4E-05 43.5 10.6 29 396-424 116-144 (266)
340 KOG0951|consensus 89.2 2.5 5.5E-05 51.7 10.9 108 394-516 1156-1268(1674)
341 PRK06731 flhF flagellar biosyn 89.1 9.6 0.00021 39.8 14.2 129 398-557 76-214 (270)
342 KOG0331|consensus 89.1 0.81 1.8E-05 51.5 6.6 93 184-276 157-254 (519)
343 PF13173 AAA_14: AAA domain 89.1 3.6 7.7E-05 37.5 9.9 42 501-543 61-102 (128)
344 PF06733 DEAD_2: DEAD_2; Inte 89.1 0.34 7.4E-06 46.9 3.2 39 238-276 118-160 (174)
345 PHA03368 DNA packaging termina 88.9 0.88 1.9E-05 52.6 6.8 146 398-558 255-420 (738)
346 PRK00440 rfc replication facto 88.9 11 0.00025 39.7 15.1 44 377-423 21-64 (319)
347 PRK08903 DnaA regulatory inact 88.9 3.1 6.8E-05 41.9 10.3 30 396-425 41-70 (227)
348 COG3267 ExeA Type II secretory 88.8 2.1 4.6E-05 43.8 8.6 112 397-539 51-173 (269)
349 PRK07471 DNA polymerase III su 88.7 4.4 9.6E-05 44.2 11.8 150 377-539 23-181 (365)
350 PRK05986 cob(I)alamin adenolsy 88.5 3.4 7.3E-05 40.7 9.7 145 396-554 21-172 (191)
351 COG1110 Reverse gyrase [DNA re 88.2 1.1 2.4E-05 53.6 7.1 81 193-273 126-215 (1187)
352 KOG0738|consensus 88.2 1.7 3.6E-05 47.0 7.8 106 396-547 244-368 (491)
353 PRK14957 DNA polymerase III su 88.0 4.1 9E-05 46.8 11.5 45 378-424 21-65 (546)
354 PRK11034 clpA ATP-dependent Cl 87.9 3.3 7.2E-05 49.5 11.1 28 396-423 206-233 (758)
355 PF00308 Bac_DnaA: Bacterial d 87.9 7.8 0.00017 39.1 12.3 28 398-425 35-62 (219)
356 PRK14963 DNA polymerase III su 87.9 6 0.00013 45.2 12.6 46 377-425 18-64 (504)
357 PHA03372 DNA packaging termina 87.8 0.72 1.6E-05 52.6 5.1 139 406-557 211-366 (668)
358 TIGR01243 CDC48 AAA family ATP 87.8 2 4.3E-05 51.5 9.3 73 396-513 486-558 (733)
359 TIGR00416 sms DNA repair prote 87.8 4.4 9.6E-05 45.6 11.5 91 396-514 93-183 (454)
360 PRK14969 DNA polymerase III su 87.7 11 0.00024 43.4 14.7 45 377-423 20-64 (527)
361 PRK14086 dnaA chromosomal repl 87.5 5.7 0.00012 46.1 12.2 101 398-539 315-419 (617)
362 TIGR02639 ClpA ATP-dependent C 87.4 4.1 8.9E-05 48.8 11.6 44 378-424 187-230 (731)
363 PRK07940 DNA polymerase III su 87.2 4 8.7E-05 45.0 10.5 28 397-424 36-63 (394)
364 PRK06067 flagellar accessory p 87.1 8.2 0.00018 39.1 12.1 52 396-454 24-75 (234)
365 PRK14722 flhF flagellar biosyn 87.1 7.2 0.00016 42.6 12.1 129 397-552 137-270 (374)
366 TIGR03689 pup_AAA proteasome A 86.9 2.5 5.4E-05 48.1 8.8 29 395-423 214-242 (512)
367 KOG0327|consensus 86.9 1.2 2.7E-05 47.7 5.9 140 396-539 62-210 (397)
368 smart00488 DEXDc2 DEAD-like he 86.7 0.56 1.2E-05 49.5 3.4 38 238-275 210-250 (289)
369 smart00489 DEXDc3 DEAD-like he 86.7 0.56 1.2E-05 49.5 3.4 38 238-275 210-250 (289)
370 PTZ00293 thymidine kinase; Pro 86.4 4.4 9.5E-05 40.6 9.3 34 401-441 8-41 (211)
371 PRK13826 Dtr system oriT relax 86.2 3.7 8E-05 50.8 10.3 129 373-546 381-512 (1102)
372 COG1222 RPT1 ATP-dependent 26S 86.1 4.8 0.0001 43.2 9.7 28 393-420 181-208 (406)
373 PRK07133 DNA polymerase III su 86.1 15 0.00033 43.6 14.8 46 377-424 22-67 (725)
374 PRK14948 DNA polymerase III su 86.0 6.1 0.00013 46.3 11.7 46 377-424 20-65 (620)
375 PRK10416 signal recognition pa 85.9 19 0.00042 38.5 14.6 128 400-549 117-254 (318)
376 COG0470 HolB ATPase involved i 85.8 3.5 7.6E-05 43.7 9.0 29 399-427 26-54 (325)
377 TIGR03714 secA2 accessory Sec 85.6 1.6 3.5E-05 51.7 6.6 86 194-279 113-213 (762)
378 COG0552 FtsY Signal recognitio 85.6 11 0.00023 40.4 12.0 125 400-547 142-277 (340)
379 KOG0342|consensus 85.5 1.6 3.5E-05 48.2 6.1 83 194-276 156-245 (543)
380 PRK03992 proteasome-activating 85.4 3.3 7.1E-05 45.7 8.7 27 395-421 163-189 (389)
381 PRK13342 recombination factor 85.4 5.5 0.00012 44.2 10.6 26 396-421 35-60 (413)
382 PRK05896 DNA polymerase III su 85.3 31 0.00067 40.1 16.6 46 378-425 21-66 (605)
383 TIGR00959 ffh signal recogniti 85.3 12 0.00026 41.8 12.9 25 399-423 101-125 (428)
384 TIGR01425 SRP54_euk signal rec 85.2 17 0.00037 40.5 14.1 26 400-425 103-128 (429)
385 cd02037 MRP-like MRP (Multiple 85.2 10 0.00023 36.1 11.2 112 401-556 4-118 (169)
386 KOG0733|consensus 85.1 8.4 0.00018 44.2 11.5 74 395-513 543-616 (802)
387 PRK10867 signal recognition pa 85.1 12 0.00026 41.8 12.8 26 399-424 102-127 (433)
388 COG1702 PhoH Phosphate starvat 85.0 1.5 3.2E-05 46.7 5.4 42 501-544 243-284 (348)
389 PRK14950 DNA polymerase III su 84.9 19 0.0004 42.1 15.0 44 377-423 20-64 (585)
390 PF13872 AAA_34: P-loop contai 84.9 0.64 1.4E-05 48.8 2.6 40 239-278 136-189 (303)
391 PRK08939 primosomal protein Dn 84.9 5.4 0.00012 42.4 9.7 30 396-425 155-184 (306)
392 PF06745 KaiC: KaiC; InterPro 84.8 5 0.00011 40.3 9.1 52 396-454 18-70 (226)
393 COG1419 FlhF Flagellar GTP-bin 84.6 17 0.00036 40.0 13.2 134 397-558 203-342 (407)
394 PRK00411 cdc6 cell division co 84.6 23 0.0005 38.8 15.0 31 395-425 53-83 (394)
395 PRK08769 DNA polymerase III su 84.2 16 0.00035 39.1 13.0 52 372-425 3-54 (319)
396 TIGR00596 rad1 DNA repair prot 84.2 7 0.00015 47.1 11.2 121 479-643 7-137 (814)
397 PRK08058 DNA polymerase III su 84.1 7.4 0.00016 41.8 10.5 47 377-425 10-56 (329)
398 PRK12724 flagellar biosynthesi 84.1 15 0.00033 40.8 12.9 126 400-557 226-362 (432)
399 PTZ00454 26S protease regulato 84.0 2.5 5.5E-05 46.7 6.9 26 395-420 177-202 (398)
400 KOG0923|consensus 83.9 3.9 8.4E-05 47.0 8.2 148 397-558 280-440 (902)
401 cd01125 repA Hexameric Replica 83.8 22 0.00048 36.1 13.5 43 399-441 3-50 (239)
402 PRK05298 excinuclease ABC subu 83.8 3.6 7.9E-05 48.5 8.6 77 373-463 12-89 (652)
403 COG1435 Tdk Thymidine kinase [ 83.8 6.2 0.00014 38.9 8.7 108 401-538 8-118 (201)
404 TIGR00064 ftsY signal recognit 83.7 30 0.00065 36.1 14.5 118 399-539 74-202 (272)
405 KOG0740|consensus 83.6 2.7 5.8E-05 46.4 6.9 49 395-453 184-232 (428)
406 PRK14953 DNA polymerase III su 83.6 23 0.00051 40.2 14.7 44 377-423 20-64 (486)
407 PF02702 KdpD: Osmosensitive K 83.5 5 0.00011 39.7 7.9 115 398-538 6-123 (211)
408 TIGR03877 thermo_KaiC_1 KaiC d 83.5 13 0.00029 37.7 11.6 52 395-453 19-70 (237)
409 KOG0729|consensus 83.4 9 0.0002 39.4 9.9 27 392-418 206-232 (435)
410 TIGR00708 cobA cob(I)alamin ad 83.2 1.7 3.8E-05 42.0 4.7 139 400-551 8-151 (173)
411 cd00561 CobA_CobO_BtuR ATP:cor 82.9 4.2 9E-05 38.9 7.1 133 401-551 6-149 (159)
412 COG0541 Ffh Signal recognition 82.9 6.4 0.00014 43.3 9.3 93 400-514 103-195 (451)
413 PF00265 TK: Thymidine kinase; 82.8 6.5 0.00014 38.3 8.6 34 401-441 5-38 (176)
414 PRK14954 DNA polymerase III su 82.8 28 0.0006 40.8 15.1 46 377-424 20-65 (620)
415 KOG0339|consensus 82.7 4.4 9.5E-05 45.1 7.9 84 193-276 297-385 (731)
416 PRK06647 DNA polymerase III su 82.6 13 0.00028 43.1 12.3 45 378-424 21-65 (563)
417 TIGR01242 26Sp45 26S proteasom 82.6 2.7 6E-05 45.8 6.6 27 395-421 154-180 (364)
418 PRK12727 flagellar biosynthesi 82.6 26 0.00057 40.1 14.2 124 398-552 351-482 (559)
419 PRK08533 flagellar accessory p 82.0 15 0.00033 37.2 11.4 44 396-446 23-66 (230)
420 PRK04195 replication factor C 81.9 19 0.00041 40.9 13.2 25 397-421 39-63 (482)
421 COG1201 Lhr Lhr-like helicases 81.8 2.4 5.1E-05 50.6 6.0 105 194-300 75-194 (814)
422 PRK09183 transposase/IS protei 81.6 13 0.00029 38.4 10.9 30 396-425 101-130 (259)
423 PRK13709 conjugal transfer nic 81.5 6.8 0.00015 50.9 10.2 141 369-544 963-1104(1747)
424 TIGR01075 uvrD DNA helicase II 81.2 8 0.00017 46.3 10.3 70 373-456 4-74 (715)
425 cd01122 GP4d_helicase GP4d_hel 80.3 23 0.0005 36.6 12.3 50 396-452 29-79 (271)
426 PRK11054 helD DNA helicase IV; 80.2 7.8 0.00017 45.9 9.6 70 373-456 196-266 (684)
427 PRK06871 DNA polymerase III su 80.2 16 0.00036 39.1 11.2 50 374-425 3-52 (325)
428 PRK00080 ruvB Holliday junctio 80.1 38 0.00083 36.2 14.2 26 396-421 50-75 (328)
429 PRK07993 DNA polymerase III su 80.0 21 0.00046 38.4 12.1 52 373-426 2-53 (334)
430 KOG0739|consensus 79.8 3.7 7.9E-05 42.9 5.7 74 397-515 166-239 (439)
431 CHL00176 ftsH cell division pr 79.6 12 0.00026 44.0 10.8 25 396-420 215-239 (638)
432 TIGR03117 cas_csf4 CRISPR-asso 79.4 2 4.3E-05 50.1 4.3 44 237-280 180-225 (636)
433 KOG0730|consensus 79.4 9.4 0.0002 44.1 9.3 117 393-560 464-594 (693)
434 PRK11747 dinG ATP-dependent DN 79.4 1.6 3.5E-05 51.8 3.6 42 238-279 218-264 (697)
435 PRK13341 recombination factor 79.3 9.2 0.0002 45.6 9.8 26 396-421 51-76 (725)
436 TIGR01074 rep ATP-dependent DN 79.2 13 0.00027 44.1 11.1 69 374-456 2-71 (664)
437 TIGR00604 rad3 DNA repair heli 79.0 1.9 4.2E-05 51.3 4.2 60 209-275 172-234 (705)
438 KOG0651|consensus 79.0 4.2 9.1E-05 42.8 5.9 76 395-515 164-239 (388)
439 PRK04328 hypothetical protein; 78.9 22 0.00047 36.6 11.4 51 396-453 22-72 (249)
440 TIGR02655 circ_KaiC circadian 78.7 19 0.00042 40.9 11.9 97 395-513 261-365 (484)
441 COG0653 SecA Preprotein transl 78.7 10 0.00022 45.3 9.7 135 398-554 94-241 (822)
442 TIGR01407 dinG_rel DnaQ family 78.4 1.8 3.8E-05 52.9 3.6 39 240-278 417-457 (850)
443 PF00580 UvrD-helicase: UvrD/R 78.3 3 6.4E-05 43.7 4.9 119 375-511 2-125 (315)
444 TIGR03878 thermo_KaiC_2 KaiC d 78.3 14 0.0003 38.3 9.8 38 397-441 36-73 (259)
445 PRK09200 preprotein translocas 78.3 5 0.00011 48.1 7.1 84 193-279 120-217 (790)
446 COG1199 DinG Rad3-related DNA 78.2 5.8 0.00013 46.8 7.8 69 372-451 14-83 (654)
447 PRK12726 flagellar biosynthesi 78.2 29 0.00064 38.1 12.3 88 397-514 206-298 (407)
448 KOG0744|consensus 78.0 11 0.00024 40.0 8.7 96 346-452 135-231 (423)
449 COG3587 Restriction endonuclea 77.9 3 6.5E-05 49.2 5.0 103 192-296 104-241 (985)
450 cd01128 rho_factor Transcripti 77.7 23 0.0005 36.5 11.0 27 395-421 14-40 (249)
451 KOG0338|consensus 77.7 3.4 7.3E-05 46.1 5.0 83 191-274 251-340 (691)
452 PRK14712 conjugal transfer nic 77.6 12 0.00027 48.1 10.6 143 369-546 831-974 (1623)
453 CHL00206 ycf2 Ycf2; Provisiona 77.5 8.7 0.00019 49.8 9.1 43 395-447 1628-1670(2281)
454 PRK09376 rho transcription ter 77.5 5.1 0.00011 43.9 6.3 29 396-424 168-196 (416)
455 PRK11773 uvrD DNA-dependent he 77.4 13 0.00028 44.6 10.4 71 372-456 8-79 (721)
456 PF05496 RuvB_N: Holliday junc 77.0 6.2 0.00013 39.9 6.3 24 397-420 50-73 (233)
457 PRK04132 replication factor C 77.0 8.9 0.00019 46.3 8.8 59 501-559 630-689 (846)
458 PRK06305 DNA polymerase III su 77.0 58 0.0013 36.7 14.9 46 377-424 21-66 (451)
459 PRK06904 replicative DNA helic 76.9 34 0.00073 38.8 13.0 114 396-515 220-348 (472)
460 PLN03137 ATP-dependent DNA hel 76.8 4.2 9E-05 50.2 6.0 107 193-301 501-628 (1195)
461 PF06564 YhjQ: YhjQ protein; 76.4 7.7 0.00017 39.8 7.0 94 405-511 10-127 (243)
462 TIGR00678 holB DNA polymerase 76.3 19 0.00042 34.9 9.8 27 398-424 15-41 (188)
463 PHA02518 ParA-like protein; Pr 76.2 22 0.00048 34.9 10.3 38 405-449 9-48 (211)
464 TIGR02760 TraI_TIGR conjugativ 76.2 21 0.00046 47.5 12.6 150 372-552 428-579 (1960)
465 COG0593 DnaA ATPase involved i 76.0 37 0.0008 37.6 12.5 116 397-554 113-236 (408)
466 KOG0952|consensus 75.6 3.1 6.6E-05 50.1 4.3 111 396-516 942-1061(1230)
467 TIGR02397 dnaX_nterm DNA polym 75.6 26 0.00057 37.6 11.5 46 377-424 18-63 (355)
468 TIGR01241 FtsH_fam ATP-depende 75.4 8.5 0.00019 43.8 7.9 26 395-420 86-111 (495)
469 TIGR03499 FlhF flagellar biosy 75.3 17 0.00036 38.2 9.5 26 399-424 196-221 (282)
470 KOG0345|consensus 75.0 5.3 0.00012 44.1 5.6 202 194-470 81-294 (567)
471 PRK06964 DNA polymerase III su 74.7 31 0.00068 37.3 11.5 48 374-425 2-49 (342)
472 PF01443 Viral_helicase1: Vira 74.2 4.4 9.5E-05 40.7 4.7 43 500-545 61-103 (234)
473 PRK15483 type III restriction- 74.2 7.2 0.00016 47.5 7.0 102 192-294 89-233 (986)
474 PRK13849 putative crown gall t 74.1 19 0.00042 36.5 9.3 36 407-449 12-49 (231)
475 PRK06090 DNA polymerase III su 73.8 40 0.00088 36.1 12.0 51 373-425 3-53 (319)
476 PTZ00361 26 proteosome regulat 73.7 6.5 0.00014 44.0 6.2 27 395-421 215-241 (438)
477 COG0465 HflB ATP-dependent Zn 73.7 24 0.00053 40.8 10.8 24 395-418 181-204 (596)
478 PRK14971 DNA polymerase III su 73.3 47 0.001 39.0 13.3 45 377-423 21-65 (614)
479 PRK14970 DNA polymerase III su 73.2 32 0.00068 37.4 11.4 45 377-423 21-65 (367)
480 KOG0335|consensus 73.0 5.6 0.00012 44.4 5.3 101 192-300 152-257 (482)
481 PF13481 AAA_25: AAA domain; P 72.1 29 0.00063 33.6 9.8 60 397-456 32-94 (193)
482 PRK08760 replicative DNA helic 72.0 46 0.001 37.7 12.6 113 396-514 228-352 (476)
483 PRK07246 bifunctional ATP-depe 71.6 3.6 7.7E-05 49.9 3.8 37 240-276 414-451 (820)
484 PF07015 VirC1: VirC1 protein; 71.4 20 0.00043 36.5 8.4 40 407-453 12-53 (231)
485 TIGR01243 CDC48 AAA family ATP 71.3 8.9 0.00019 46.0 7.0 27 395-421 210-236 (733)
486 PRK08074 bifunctional ATP-depe 71.1 3.9 8.5E-05 50.3 4.1 40 238-277 430-471 (928)
487 PF13191 AAA_16: AAA ATPase do 71.0 57 0.0012 30.9 11.6 31 395-425 22-52 (185)
488 KOG0731|consensus 70.9 30 0.00066 41.1 10.9 24 395-418 342-365 (774)
489 PRK10919 ATP-dependent DNA hel 70.7 19 0.00042 42.7 9.6 69 374-456 3-72 (672)
490 KOG1133|consensus 69.6 4 8.8E-05 47.1 3.3 52 457-515 308-362 (821)
491 COG1197 Mfd Transcription-repa 69.4 60 0.0013 40.3 13.2 251 193-537 644-911 (1139)
492 PHA03333 putative ATPase subun 69.3 57 0.0012 38.4 12.4 144 377-540 173-332 (752)
493 CHL00195 ycf46 Ycf46; Provisio 69.3 8 0.00017 43.9 5.7 26 395-420 257-282 (489)
494 PRK14721 flhF flagellar biosyn 69.2 53 0.0011 36.6 11.9 133 397-557 191-329 (420)
495 PRK06620 hypothetical protein; 68.7 30 0.00066 34.6 9.3 49 502-552 86-137 (214)
496 TIGR00635 ruvB Holliday juncti 68.7 15 0.00031 38.8 7.3 25 397-421 30-54 (305)
497 TIGR00963 secA preprotein tran 68.7 8.8 0.00019 45.5 6.0 79 194-275 99-190 (745)
498 PF02572 CobA_CobO_BtuR: ATP:c 68.4 15 0.00033 35.6 6.6 136 400-549 6-148 (172)
499 COG2812 DnaX DNA polymerase II 68.0 31 0.00068 39.3 9.9 46 378-425 21-66 (515)
500 cd00984 DnaB_C DnaB helicase C 68.0 1E+02 0.0022 31.0 13.2 40 397-442 13-52 (242)
No 1
>KOG0387|consensus
Probab=100.00 E-value=1.7e-60 Score=521.44 Aligned_cols=302 Identities=34% Similarity=0.535 Sum_probs=276.7
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
.+.||..+.+.|+|||++||+||++. +-.+.||||+||||||||+|+|+|++.+...+.. .+|+|||||.+
T Consensus 195 ~~~vPg~I~~~Lf~yQreGV~WL~~L-----~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~----~~paLIVCP~T 265 (923)
T KOG0387|consen 195 GFKVPGFIWSKLFPYQREGVQWLWEL-----YCQRAGGILGDEMGLGKTIQIISFLAALHHSGKL----TKPALIVCPAT 265 (923)
T ss_pred cccccHHHHHHhhHHHHHHHHHHHHH-----HhccCCCeecccccCccchhHHHHHHHHhhcccc----cCceEEEccHH
Confidence 37899999999999999999999985 4567899999999999999999999999887542 36799999999
Q ss_pred hHHHHHHHHHHHhCCCCeeEeecCCcchhh-------------hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcC
Q psy12466 443 LTSNWNDEFKKWLGLTRMCPYHVNQKNKAE-------------DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDE 509 (680)
Q Consensus 443 ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDE 509 (680)
++.||..||.+|+|..++.++|+....... .........|+||||+.++..-+.+....|+++|+||
T Consensus 266 ii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 266 IIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecC
Confidence 999999999999999999999998773211 1111235679999999999988889999999999999
Q ss_pred cccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhh
Q psy12466 510 GHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589 (680)
Q Consensus 510 aH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~ 589 (680)
+|+|||++++.+.++.++++.+|++||||||||++.|||+|++|+.|+.+++...|.+.|..||..|++.+++..+...+
T Consensus 346 GH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~a 425 (923)
T KOG0387|consen 346 GHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTA 425 (923)
T ss_pred cccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhccceeeechhHHhh-cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh---chhhHHHHHHHHHHhccC
Q psy12466 590 ELRSSQLAKRTAGFILRRTSDVQAS-LLNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SRDSHLSVTHALRKICNH 665 (680)
Q Consensus 590 ~~~~~~L~~~l~~f~lRrtk~~v~~-~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~---~~~~~l~~l~~LRqicnH 665 (680)
+.+...|+.+++||+|||+|.++.. .||.|.|+|++|.||+.|+++|++++++..... .....|..+..||++|||
T Consensus 426 ykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnH 505 (923)
T KOG0387|consen 426 YKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNH 505 (923)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCC
Confidence 9999999999999999999999988 999999999999999999999999999877654 455678899999999999
Q ss_pred ccccCCCC
Q psy12466 666 PGLVQQPD 673 (680)
Q Consensus 666 P~L~~~~~ 673 (680)
|.|+...+
T Consensus 506 Pdll~~~~ 513 (923)
T KOG0387|consen 506 PDLLDRRD 513 (923)
T ss_pred cccccCcc
Confidence 99999863
No 2
>KOG0385|consensus
Probab=100.00 E-value=8e-58 Score=497.90 Aligned_cols=287 Identities=30% Similarity=0.439 Sum_probs=255.9
Q ss_pred Ccccc-cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHH
Q psy12466 367 DGFLS-RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTS 445 (680)
Q Consensus 367 p~~l~-~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~ 445 (680)
|..++ .+|||||.+|++||... +.++-+||||||||||||+|+|+++.++...... .+|+||+||.|++.
T Consensus 160 P~~v~~g~lr~YQveGlnWLi~l-----~engingILaDEMGLGKTlQtIs~l~yl~~~~~~----~GPfLVi~P~StL~ 230 (971)
T KOG0385|consen 160 PSYVKGGELRDYQLEGLNWLISL-----YENGINGILADEMGLGKTLQTISLLGYLKGRKGI----PGPFLVIAPKSTLD 230 (971)
T ss_pred chhhcCCccchhhhccHHHHHHH-----HhcCcccEeehhcccchHHHHHHHHHHHHHhcCC----CCCeEEEeeHhhHH
Confidence 44555 88999999999999974 5678899999999999999999999999885432 35699999999999
Q ss_pred HHHHHHHHHhCCCCeeEeecCCcchhh---hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHH
Q psy12466 446 NWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE 522 (680)
Q Consensus 446 qW~~E~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~ 522 (680)
||.+||++|+|++++++|+|+...+.. +....+.++|+||||+++.++...+.+..|.++||||||++||..|.+++
T Consensus 231 NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~ 310 (971)
T KOG0385|consen 231 NWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSK 310 (971)
T ss_pred HHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHH
Confidence 999999999999999999999876643 44455689999999999999999999999999999999999999999999
Q ss_pred HHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhcc
Q psy12466 523 LMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602 (680)
Q Consensus 523 ~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 602 (680)
.++.+.+.+|+++||||+||++.|||+||+|+.|+.|.+.+.|.+||..-... ...+...+||.+++|
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~------------~~~e~v~~Lh~vL~p 378 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCE------------GDQELVSRLHKVLRP 378 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccc------------cCHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999873211 123356889999999
Q ss_pred ceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHhccCccccCCCCC
Q psy12466 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------SRDSHLSVTHALRKICNHPGLVQQPDM 674 (680)
Q Consensus 603 f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------~~~~~l~~l~~LRqicnHP~L~~~~~~ 674 (680)
|++||.|.+|...||+|.|.+++|.||+.|++.|..++....... .....++++|+||||||||+||...+.
T Consensus 379 FlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP 456 (971)
T KOG0385|consen 379 FLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP 456 (971)
T ss_pred HHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC
Confidence 999999999999999999999999999999999999987554444 335678999999999999999999665
No 3
>KOG0391|consensus
Probab=100.00 E-value=7.6e-56 Score=493.95 Aligned_cols=297 Identities=30% Similarity=0.444 Sum_probs=265.2
Q ss_pred cccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 362 ~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
+++.+|..|..+||.||+.|++||.. .+.++.+||||||||||||+|.|+|++++.-... .++|.|||||+
T Consensus 604 VktpvPsLLrGqLReYQkiGLdWLat-----LYeknlNGILADEmGLGKTIQtISllAhLACeeg----nWGPHLIVVpT 674 (1958)
T KOG0391|consen 604 VKTPVPSLLRGQLREYQKIGLDWLAT-----LYEKNLNGILADEMGLGKTIQTISLLAHLACEEG----NWGPHLIVVPT 674 (1958)
T ss_pred eccCchHHHHHHHHHHHHhhHHHHHH-----HHHhcccceehhhhcccchhHHHHHHHHHHhccc----CCCCceEEeec
Confidence 46778889999999999999999986 3567889999999999999999999999886543 24679999999
Q ss_pred chHHHHHHHHHHHhCCCCeeEeecCCcchhh---hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCccc
Q psy12466 442 SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKS 518 (680)
Q Consensus 442 sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s 518 (680)
+++.||.-||++|||.+++..|.|+.+.+.. .|.....+.|.||+|..+..+...+...+|.++|+||||+|||..+
T Consensus 675 sviLnWEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfks 754 (1958)
T KOG0391|consen 675 SVILNWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKS 754 (1958)
T ss_pred hhhhhhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhH
Confidence 9999999999999999999999998876643 3445567889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHH
Q psy12466 519 KLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAK 598 (680)
Q Consensus 519 ~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~ 598 (680)
+.++++..+++.+|++|||||++|++.|||+|+.||+|..|.+...|+.||.+|+...-. ..+........+||+
T Consensus 755 qrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiE-----gsqeyn~klV~RLHk 829 (1958)
T KOG0391|consen 755 QRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIE-----GSQEYNHKLVIRLHK 829 (1958)
T ss_pred HHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcc-----cchhhchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998854322 223444666789999
Q ss_pred HhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHH--h---chhhHHHHHHHHHHhccCccccCCC
Q psy12466 599 RTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR--A---SRDSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 599 ~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~--~---~~~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
.++||+|||+|.+|.++||.|.|++|.|.||..|+.+|++++.+.... + +-.+++++||+||||||||.||.+.
T Consensus 830 VlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpR 908 (1958)
T KOG0391|consen 830 VLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPR 908 (1958)
T ss_pred HhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCC
Confidence 999999999999999999999999999999999999999998755332 2 5567899999999999999999864
No 4
>KOG0392|consensus
Probab=100.00 E-value=1.9e-54 Score=488.62 Aligned_cols=311 Identities=31% Similarity=0.469 Sum_probs=277.6
Q ss_pred CCccccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC--CCCCCccceEE
Q psy12466 359 KPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG--PYGMPVIRKVL 436 (680)
Q Consensus 359 ~~~~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~--~~~~~~~~~~L 436 (680)
..+++..+|-.++..||.||.+||+|+.- ...-+-.||||||||||||+|+|++++.-.... ....-...|.|
T Consensus 961 ski~~y~Ip~pI~a~LRkYQqEGVnWLaF-----Lnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSL 1035 (1549)
T KOG0392|consen 961 SKIPEYKIPVPISAKLRKYQQEGVNWLAF-----LNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSL 1035 (1549)
T ss_pred ccCCccccccchhHHHHHHHHhccHHHHH-----HHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeE
Confidence 34667788888999999999999999842 344567899999999999999999887644333 11111235689
Q ss_pred EEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc
Q psy12466 437 IVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 437 IV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~ 516 (680)
||||++|.++|+.|+.+|+|.+++..|.|....+.........++|+|++|+.++++++.+.+..|.++|+||+|.+||.
T Consensus 1036 IVCPsTLtGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ 1115 (1549)
T KOG0392|consen 1036 IVCPSTLTGHWKSEVKKFFPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNS 1115 (1549)
T ss_pred EECCchhhhHHHHHHHHhcchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecch
Confidence 99999999999999999999999999998887777666666678999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHH
Q psy12466 517 KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQL 596 (680)
Q Consensus 517 ~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L 596 (680)
.++.+++++++.+.+|++|||||+||++.||||+++||+||++|+.+.|.++|.+||...+....++.+++.+-.+.+.|
T Consensus 1116 ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaL 1195 (1549)
T KOG0392|consen 1116 KTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEAL 1195 (1549)
T ss_pred HHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-----------c--hhhHHHHHHHHHHhc
Q psy12466 597 AKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA-----------S--RDSHLSVTHALRKIC 663 (680)
Q Consensus 597 ~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-----------~--~~~~l~~l~~LRqic 663 (680)
|+.+-||++||+|++|..+||+|.-+..+|+|||.|+++|+.+........ . .+.+++.|..|||+|
T Consensus 1196 HKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLc 1275 (1549)
T KOG0392|consen 1196 HKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLC 1275 (1549)
T ss_pred HHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999987722110 2 456899999999999
Q ss_pred cCccccCCCCC
Q psy12466 664 NHPGLVQQPDM 674 (680)
Q Consensus 664 nHP~L~~~~~~ 674 (680)
|||.|+..+-.
T Consensus 1276 nHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1276 NHPALVLTPVH 1286 (1549)
T ss_pred CCcceeeCCCc
Confidence 99999988643
No 5
>KOG0388|consensus
Probab=100.00 E-value=2.3e-53 Score=457.00 Aligned_cols=293 Identities=29% Similarity=0.433 Sum_probs=261.1
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
.++.|..|.++|+.||..|++||... +..|-+||||||||||||+|+|++++++.+... ..+|+|||+|.+
T Consensus 557 tV~qPkil~ctLKEYQlkGLnWLvnl-----YdqGiNGILADeMGLGKTVQsisvlAhLaE~~n----IwGPFLVVtpaS 627 (1185)
T KOG0388|consen 557 TVPQPKILKCTLKEYQLKGLNWLVNL-----YDQGINGILADEMGLGKTVQSISVLAHLAETHN----IWGPFLVVTPAS 627 (1185)
T ss_pred eccCchhhhhhhHHHhhccHHHHHHH-----HHccccceehhhhccchhHHHHHHHHHHHHhcc----CCCceEEeehHH
Confidence 36678889999999999999999875 567889999999999999999999999998765 356799999999
Q ss_pred hHHHHHHHHHHHhCCCCeeEeecCCcchhh---------hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 443 LTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---------DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 443 ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
+++||.+||.+|+|.++++.|.|+...+.. -+.....+.|+||+|+++..+...+...+|.++|+|||+.|
T Consensus 628 tL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAI 707 (1185)
T KOG0388|consen 628 TLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAI 707 (1185)
T ss_pred HHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHh
Confidence 999999999999999999999998776532 12234568899999999999999999999999999999999
Q ss_pred cCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHH
Q psy12466 514 KNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593 (680)
Q Consensus 514 kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~ 593 (680)
|...|..++.+..++++.|++|||||+||++.|||+||.|++|..|++..+|.+||...|+.....+ ..+.....
T Consensus 708 KSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~-----~tlneqqL 782 (1185)
T KOG0388|consen 708 KSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMN-----TTLNEQQL 782 (1185)
T ss_pred hhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhc-----CCcCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999776544332 34556677
Q ss_pred HHHHHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhccCccccCCCC
Q psy12466 594 SQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPD 673 (680)
Q Consensus 594 ~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~~~~~~l~~l~~LRqicnHP~L~~~~~ 673 (680)
.+||.+|+||||||.|++|..+|..|++..|+|++|..|+.+|+.+..... ......++|+||++||||.||....
T Consensus 783 ~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----~~E~~~~vmQlrKVCNHPdLFer~e 858 (1185)
T KOG0388|consen 783 QRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----SMEMENLVMQLRKVCNHPDLFERLE 858 (1185)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----HHHHHHHHHHHHHhcCChHHHhhcC
Confidence 899999999999999999999999999999999999999999998877664 2334458999999999999997653
No 6
>KOG0389|consensus
Probab=100.00 E-value=1.4e-51 Score=450.77 Aligned_cols=287 Identities=33% Similarity=0.443 Sum_probs=246.6
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
.+|+|||+.||+||.= .+..+-.||||||||||||+|+|||++++...+. .+|.|||||+|++.||.+||
T Consensus 398 i~LkdYQlvGvNWL~L-----lyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-----~gpHLVVvPsSTleNWlrEf 467 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLL-----LYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-----PGPHLVVVPSSTLENWLREF 467 (941)
T ss_pred CcccchhhhhHHHHHH-----HHHccccceehhhccCcchhHHHHHHHHHHHcCC-----CCCcEEEecchhHHHHHHHH
Confidence 4699999999999963 4566788999999999999999999999999875 24689999999999999999
Q ss_pred HHHhCCCCeeEeecCCcchhhhh----hhcCCCCEEEEeHHHHH---HHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDY----VYSRVSPVLIISYEMLI---RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~vvI~ty~~l~---~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
.+|||.++|..|+|+...+..-. .....++|++|||+.+. .+...+...+|+++|+||+|.+||..|.+++.+
T Consensus 468 ~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~L 547 (941)
T KOG0389|consen 468 AKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHL 547 (941)
T ss_pred HHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHh
Confidence 99999999999999987765321 12247899999999985 456678899999999999999999999999999
Q ss_pred HhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCH-HHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccc
Q psy12466 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL-REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGF 603 (680)
Q Consensus 525 ~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~-~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f 603 (680)
+.+++++|++|||||+||++.||+|||.|+.|..|.+. +++..-|.. ....+.......+..++..+...++.||
T Consensus 548 M~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~----k~~~d~d~e~~~l~qerIsrAK~im~PF 623 (941)
T KOG0389|consen 548 MSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKA----KKTSDGDIENALLSQERISRAKTIMKPF 623 (941)
T ss_pred ccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhc----cCCccchhhHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999864 455555543 2223455566667778899999999999
Q ss_pred eeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh---ch---hhHHHHHHHHHHhccCccccCCC
Q psy12466 604 ILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SR---DSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 604 ~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~---~~---~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
+|||.|++|..+||+|..++.+|+|+..|+++|+.+++.....+ +. ...-+.||+|||++|||-||+..
T Consensus 624 ILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~ 698 (941)
T KOG0389|consen 624 ILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSI 698 (941)
T ss_pred HHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHh
Confidence 99999999999999999999999999999999999999885444 11 11245899999999999999864
No 7
>KOG0384|consensus
Probab=100.00 E-value=1.2e-51 Score=468.56 Aligned_cols=278 Identities=32% Similarity=0.495 Sum_probs=250.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
.+||+||.+|++||+.+++ ++.+||||||||||||+|+|+|+.++...+.. .+|+|||+|.|++.+|++||
T Consensus 369 ~~LRdyQLeGlNWl~~~W~-----~~~n~ILADEmgLgktvqti~fl~~l~~~~~~----~gpflvvvplst~~~W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWY-----KRNNCILADEMGLGKTVQTITFLSYLFHSLQI----HGPFLVVVPLSTITAWEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHH-----hcccceehhhcCCCcchHHHHHHHHHHHhhhc----cCCeEEEeehhhhHHHHHHH
Confidence 6899999999999998764 56899999999999999999999999987753 45699999999999999999
Q ss_pred HHHhCCCCeeEeecCCcchhhh--h--hhcC-----CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAED--Y--VYSR-----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE 522 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~--~--~~~~-----~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~ 522 (680)
..|+ ++++++|+|....+... + .... .++++||||+++.++...|...+|.++++||||++||..+.++.
T Consensus 440 ~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~ 518 (1373)
T KOG0384|consen 440 ETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYE 518 (1373)
T ss_pred HHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHH
Confidence 9999 99999999987766422 1 1112 58899999999999999999999999999999999999999999
Q ss_pred HHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhcc
Q psy12466 523 LMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602 (680)
Q Consensus 523 ~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 602 (680)
.+..++.++|+++||||+||++.|||+|++|++|+.|.+..+|...|.. ........|+.+|+|
T Consensus 519 ~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~----------------~~e~~~~~L~~~L~P 582 (1373)
T KOG0384|consen 519 SLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE----------------ETEEQVRKLQQILKP 582 (1373)
T ss_pred HHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc----------------hhHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999888843 124456789999999
Q ss_pred ceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHhccCccccCCCCCc
Q psy12466 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------SRDSHLSVTHALRKICNHPGLVQQPDMM 675 (680)
Q Consensus 603 f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------~~~~~l~~l~~LRqicnHP~L~~~~~~~ 675 (680)
||+||.|++|.+.||+|.|.++.|+||+.|++.|+.|++.....+ +....|+++|.||||||||+||++++..
T Consensus 583 ~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~ 661 (1373)
T KOG0384|consen 583 FLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEK 661 (1373)
T ss_pred HHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHH
Confidence 999999999999999999999999999999999999999887766 3357899999999999999999998654
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=2.7e-50 Score=473.18 Aligned_cols=287 Identities=30% Similarity=0.416 Sum_probs=249.5
Q ss_pred cCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHH
Q psy12466 366 VDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTS 445 (680)
Q Consensus 366 ~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~ 445 (680)
.|..+..+|||||++|++||+.. ...+.|||||||||||||+|+|+++..+..... ..+|+|||||.+++.
T Consensus 162 qP~~i~~~Lr~YQleGlnWLi~l-----~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~----~~gp~LIVvP~SlL~ 232 (1033)
T PLN03142 162 QPSCIKGKMRDYQLAGLNWLIRL-----YENGINGILADEMGLGKTLQTISLLGYLHEYRG----ITGPHMVVAPKSTLG 232 (1033)
T ss_pred CChHhccchHHHHHHHHHHHHHH-----HhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcC----CCCCEEEEeChHHHH
Confidence 46667789999999999999874 345789999999999999999999998876432 245799999999999
Q ss_pred HHHHHHHHHhCCCCeeEeecCCcchhh---hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHH
Q psy12466 446 NWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE 522 (680)
Q Consensus 446 qW~~E~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~ 522 (680)
||.+||.+|+|..+++.+++....+.. .......++|+||||+++.+....+....|++|||||||++||..++.++
T Consensus 233 nW~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklsk 312 (1033)
T PLN03142 233 NWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSK 312 (1033)
T ss_pred HHHHHHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHH
Confidence 999999999999999999987655432 22234568999999999999999999999999999999999999999999
Q ss_pred HHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhcc
Q psy12466 523 LMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602 (680)
Q Consensus 523 ~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 602 (680)
+++.+++.+||+|||||++|++.|||++++||.|+.|++...|..+|..... .........|+.+++|
T Consensus 313 alr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~------------~~~~e~i~~L~~~L~p 380 (1033)
T PLN03142 313 TMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE------------NDQQEVVQQLHKVLRP 380 (1033)
T ss_pred HHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc------------cchHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999976210 1123456789999999
Q ss_pred ceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh----chhhHHHHHHHHHHhccCccccCCCC
Q psy12466 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA----SRDSHLSVTHALRKICNHPGLVQQPD 673 (680)
Q Consensus 603 f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~----~~~~~l~~l~~LRqicnHP~L~~~~~ 673 (680)
|++||+|.++...||++.+.+++|.||+.|+++|+.+++.....+ .....++++++||+|||||+|+....
T Consensus 381 f~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~e 455 (1033)
T PLN03142 381 FLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAE 455 (1033)
T ss_pred HHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhccc
Confidence 999999999999999999999999999999999999987654443 33457889999999999999987654
No 9
>KOG0390|consensus
Probab=100.00 E-value=9.3e-50 Score=449.11 Aligned_cols=319 Identities=43% Similarity=0.733 Sum_probs=276.5
Q ss_pred CCCCCCCccccccCcccccccCcccHHHHHHHHHhhhhhccC-CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCcc
Q psy12466 354 HNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASL-DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432 (680)
Q Consensus 354 ~~~~~~~~~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~-~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~ 432 (680)
.+....+...+.++|.+...|||||++|+.||++++.+.... +.+|||+||+||+|||+|+|+|++.+.+++|+..+.+
T Consensus 219 ~~k~~~~~v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~ 298 (776)
T KOG0390|consen 219 ASKDKFSGVHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLI 298 (776)
T ss_pred CCCCcCccceEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccc
Confidence 333333446788899999999999999999999998765432 7899999999999999999999999999999988888
Q ss_pred ceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchh-----hhh----hhcCCCCEEEEeHHHHHHHHHhhhccCce
Q psy12466 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA-----EDY----VYSRVSPVLIISYEMLIRAYQTIVDTEFD 503 (680)
Q Consensus 433 ~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~-----~~~----~~~~~~~vvI~ty~~l~~~~~~l~~~~~~ 503 (680)
++.|||||.+|+.+|.+||.+|...-++..+...+.... ..+ ..+-...|.|.+|+++++..+.+....++
T Consensus 299 ~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~g 378 (776)
T KOG0390|consen 299 NKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPG 378 (776)
T ss_pred cccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999998534444333333321 011 11224569999999999999999999999
Q ss_pred EEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChH
Q psy12466 504 LLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTE 583 (680)
Q Consensus 504 ~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~ 583 (680)
++|+||+|++||..+.+++++.++++++|++|||||+||++.|+|++++|++|+++++...|.+.|..|+..++..+++.
T Consensus 379 lLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~ 458 (776)
T KOG0390|consen 379 LLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASE 458 (776)
T ss_pred eEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHhhhhHHHHHHHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHhc
Q psy12466 584 AQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVTHALRKIC 663 (680)
Q Consensus 584 ~~~~~~~~~~~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~~~~~~l~~l~~LRqic 663 (680)
..... .++.++|+.++..|++||+.+.+.+.||++.+++|+|.+|+.|+.+|+.+........-.+..|..++.|+++|
T Consensus 459 e~~~~-~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 459 EDRER-EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhhhh-HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 77666 67799999999999999999999999999999999999999999999999988622223344888999999999
Q ss_pred cCccccCCCC
Q psy12466 664 NHPGLVQQPD 673 (680)
Q Consensus 664 nHP~L~~~~~ 673 (680)
|||.|+....
T Consensus 538 nhP~L~~~~~ 547 (776)
T KOG0390|consen 538 NHPSLLLLCE 547 (776)
T ss_pred cCHHhhcccc
Confidence 9999997333
No 10
>KOG0386|consensus
Probab=100.00 E-value=2.8e-48 Score=433.80 Aligned_cols=291 Identities=31% Similarity=0.474 Sum_probs=253.8
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWND 449 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~ 449 (680)
...+|++||+.|++||.. .+.++.+||||||||||||+|+|+++.++.+.... .+|.|||||.+++.+|..
T Consensus 391 ~GG~Lk~YQl~GLqWmVS-----LyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~----~GP~LvivPlstL~NW~~ 461 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVS-----LYNNNLNGILADEMGLGKTIQTISLITYLMEHKQM----QGPFLIIVPLSTLVNWSS 461 (1157)
T ss_pred cCCCCchhhhhhhHHHhh-----ccCCCcccccchhcccchHHHHHHHHHHHHHHccc----CCCeEEeccccccCCchh
Confidence 368899999999999986 46788999999999999999999999999886543 356999999999999999
Q ss_pred HHHHHhCCCCeeEeecCCcchh--hhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHH-h
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKA--EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT-G 526 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~-~ 526 (680)
||.+|.|.+..+.|.|....+. ......+.++|++|||+.+.++...|....|.++||||+|++||..+++...+. .
T Consensus 462 Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~ 541 (1157)
T KOG0386|consen 462 EFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTH 541 (1157)
T ss_pred hccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhcc
Confidence 9999999999999988776553 233344789999999999999999999999999999999999999999999998 6
Q ss_pred cccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCC-CCChHHHHHhhhhHHHHHHHHhcccee
Q psy12466 527 LNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRS-PNSTEAQKSLGELRSSQLAKRTAGFIL 605 (680)
Q Consensus 527 l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~-~~~~~~~~~~~~~~~~~L~~~l~~f~l 605 (680)
..+.+|++|||||+||++.|||+||+|+-|..|.+...|..||..|+...+. ...++.+. -....+||+.|+||++
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEt---lLIIrRLHkVLRPFlL 618 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEET---LLIIRRLHKVLRPFLL 618 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHH---HHHHHHHHHhhhHHHH
Confidence 7999999999999999999999999999999999999999999999987773 23333332 2345789999999999
Q ss_pred eechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHH-------hchhhHHHHHHHHHHhccCccccCCC
Q psy12466 606 RRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR-------ASRDSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 606 Rrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~-------~~~~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
||.|++|..+||+|++.++.|.||..|+.+|..+......- ......++.+|.||||||||++|...
T Consensus 619 RRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v 692 (1157)
T KOG0386|consen 619 RRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV 692 (1157)
T ss_pred HhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhh
Confidence 99999999999999999999999999999999987533221 13345788999999999999999544
No 11
>KOG1015|consensus
Probab=100.00 E-value=1.4e-46 Score=414.21 Aligned_cols=305 Identities=32% Similarity=0.509 Sum_probs=262.1
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhh----ccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEE
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDL----ASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV 438 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~----~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV 438 (680)
.+.||..+..+|+|||..||+|||++.|.. ....|-||||||.||||||+|+|+|++.+..... ..++++|||
T Consensus 658 ~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~k---lg~ktaLvV 734 (1567)
T KOG1015|consen 658 LVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDK---LGFKTALVV 734 (1567)
T ss_pred hhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhc---cCCceEEEE
Confidence 468999999999999999999999997743 3457889999999999999999999998876543 246889999
Q ss_pred eccchHHHHHHHHHHHhCCC----CeeEeecCCcch--hhh---hhhcCCCCEEEEeHHHHHHH---------------H
Q psy12466 439 TPSSLTSNWNDEFKKWLGLT----RMCPYHVNQKNK--AED---YVYSRVSPVLIISYEMLIRA---------------Y 494 (680)
Q Consensus 439 ~P~sll~qW~~E~~~~~~~~----~v~~~~~~~~~~--~~~---~~~~~~~~vvI~ty~~l~~~---------------~ 494 (680)
||.+++.||..||.+|.+++ .+-++....-.+ .+. ..+.....|.|+.|++++.. .
T Consensus 735 ~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~ 814 (1567)
T KOG1015|consen 735 CPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFN 814 (1567)
T ss_pred cchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHH
Confidence 99999999999999999853 233333322222 111 12345568999999999742 2
Q ss_pred HhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhh
Q psy12466 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPIL 574 (680)
Q Consensus 495 ~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~ 574 (680)
..+....+|+|||||||.+||..+.+++++.++++.+||+|||||+||++.|+|.|++|+.|+++|+..+|.++|.+||.
T Consensus 815 k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~ 894 (1567)
T KOG1015|consen 815 KALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQ 894 (1567)
T ss_pred HhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccc
Confidence 33556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHhhhhHHHHHHHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-------
Q psy12466 575 ESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------- 647 (680)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------- 647 (680)
.|+..+++.........+.+.|+.+|..|+.|+.-..+...||||++++|.|.||+.|..+|..+++......
T Consensus 895 nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg~~ 974 (1567)
T KOG1015|consen 895 NGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEGGR 974 (1567)
T ss_pred cCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998332111
Q ss_pred -chhhHHHHHHHHHHhccCccccC
Q psy12466 648 -SRDSHLSVTHALRKICNHPGLVQ 670 (680)
Q Consensus 648 -~~~~~l~~l~~LRqicnHP~L~~ 670 (680)
-....|..+..|++|.+||+.+.
T Consensus 975 g~~arlf~dfqmlsrIwtHP~~lq 998 (1567)
T KOG1015|consen 975 GAGARLFQDFQMLSRIWTHPWCLQ 998 (1567)
T ss_pred chhhhHHHHHHHHHHHhcCCCcee
Confidence 22357889999999999998654
No 12
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=5.2e-45 Score=384.38 Aligned_cols=279 Identities=35% Similarity=0.507 Sum_probs=227.8
Q ss_pred ccHHHHHHHHHhh----hhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERV----CDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 377 yQ~~gv~~l~~~~----~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
||++||+||+.+. ........+|||||||||+|||+++++++..+....+.. ..+++|||||.+++.+|..|+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~--~~~~~LIv~P~~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQR--GEKKTLIVVPSSLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTS--S-S-EEEEE-TTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccc--cccceeEeeccchhhhhhhhhc
Confidence 8999999999873 001125678999999999999999999999887765432 1246999999999999999999
Q ss_pred HHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-----HHHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 453 KWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-----RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 453 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-----~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
+|++ ..++.++.+..............++++|+||+.+. .....+...+|++||+||+|+++|..+..++++.
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~ 158 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALR 158 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHH
T ss_pred cccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccccc
Confidence 9994 56777777666233333334457899999999999 6667788888999999999999999999999999
Q ss_pred hcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhcccee
Q psy12466 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFIL 605 (680)
Q Consensus 526 ~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~l 605 (680)
.+.+.++|+|||||++|++.|+|++++||.|..+.+...|.+.|..+ ...........|+.++++|++
T Consensus 159 ~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~~~L~~~l~~~~~ 226 (299)
T PF00176_consen 159 KLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENIERLRELLSEFMI 226 (299)
T ss_dssp CCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHHHHHHHHHCCCEE
T ss_pred ccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------ccccccccccccccccchhhh
Confidence 99999999999999999999999999999999999999999998765 233456677899999999999
Q ss_pred eechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh---------chhhHHHHHHHHHHhccCcccc
Q psy12466 606 RRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA---------SRDSHLSVTHALRKICNHPGLV 669 (680)
Q Consensus 606 Rrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~---------~~~~~l~~l~~LRqicnHP~L~ 669 (680)
||+++++...||+..+.++.|+||+.|+++|+.+........ ....++..+++|||+||||+|+
T Consensus 227 r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 227 RRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp CHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 999999988899999999999999999999999888776543 3456789999999999999986
No 13
>KOG4439|consensus
Probab=100.00 E-value=7.9e-44 Score=385.35 Aligned_cols=291 Identities=27% Similarity=0.353 Sum_probs=237.0
Q ss_pred ccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC---CCCCccceEEEEecc
Q psy12466 365 TVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP---YGMPVIRKVLIVTPS 441 (680)
Q Consensus 365 ~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~---~~~~~~~~~LIV~P~ 441 (680)
.-|..+...|.|||+.|++||..+ ....+.|||||||||+|||+++|+++...+.... ...+...++|||||.
T Consensus 317 e~P~g~~v~LmpHQkaal~Wl~wR----E~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa 392 (901)
T KOG4439|consen 317 ETPDGLKVELMPHQKAALRWLLWR----ESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA 392 (901)
T ss_pred CCCCcceeecchhhhhhhhhhccc----ccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH
Confidence 345568889999999999999987 3557889999999999999999999987654321 112223469999999
Q ss_pred chHHHHHHHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHH----------HHhhhccCceEEEEcC
Q psy12466 442 SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA----------YQTIVDTEFDLLICDE 509 (680)
Q Consensus 442 sll~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~----------~~~l~~~~~~~vIlDE 509 (680)
++++||..|+.+-... ++|++|||..+ +.........||||||||..+... ...+....|.+||+||
T Consensus 393 Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDE 471 (901)
T KOG4439|consen 393 SLIHQWEAEVARRLEQNALSVYLYHGPNK-REISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDE 471 (901)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEecCCcc-ccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhh
Confidence 9999999999988754 67888888775 333334456799999999998761 1236677899999999
Q ss_pred cccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhh
Q psy12466 510 GHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589 (680)
Q Consensus 510 aH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~ 589 (680)
||.+||..++.+.+++.|.+..||+|||||++|+.-|+|+|+.||+-.+|++...|+++...+-
T Consensus 472 AH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s---------------- 535 (901)
T KOG4439|consen 472 AHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMS---------------- 535 (901)
T ss_pred hhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcc----------------
Confidence 9999999999999999999999999999999999999999999999999999999998887532
Q ss_pred hhHHHHHHHHhccceeeechhHHhh-----cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-----------------
Q psy12466 590 ELRSSQLAKRTAGFILRRTSDVQAS-----LLNSKRETLLVCRATPLQQSLYLRCVEYWDARA----------------- 647 (680)
Q Consensus 590 ~~~~~~L~~~l~~f~lRrtk~~v~~-----~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~----------------- 647 (680)
.....+|.-+.++.+|||||+++.. .||.+.-.+..++|+..+...|+.+.+....-.
T Consensus 536 ~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~ 615 (901)
T KOG4439|consen 536 KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQ 615 (901)
T ss_pred ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCcc
Confidence 1123456667789999999998876 699999999999999999999988766432211
Q ss_pred ------------------------------chhhHHHHHHHHHHhccCccccCCCCCcc
Q psy12466 648 ------------------------------SRDSHLSVTHALRKICNHPGLVQQPDMME 676 (680)
Q Consensus 648 ------------------------------~~~~~l~~l~~LRqicnHP~L~~~~~~~~ 676 (680)
..+.+|..|.+|||+||||.+.......+
T Consensus 616 s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~ 674 (901)
T KOG4439|consen 616 SRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPE 674 (901)
T ss_pred ccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHH
Confidence 01235899999999999998887765543
No 14
>KOG1016|consensus
Probab=100.00 E-value=3.3e-40 Score=357.69 Aligned_cols=306 Identities=32% Similarity=0.509 Sum_probs=258.9
Q ss_pred cccccCcccccccCcccHHHHHHHHHhhh----hhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEE
Q psy12466 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVC----DLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLI 437 (680)
Q Consensus 362 ~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~----~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LI 437 (680)
+++-+-|.+...|+|||.-||+||+++.. ....+.+-|||||+.||||||+|+|+|+..+.+..+ ++.+|+
T Consensus 243 e~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~-----AKtVL~ 317 (1387)
T KOG1016|consen 243 EDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTK-----AKTVLV 317 (1387)
T ss_pred cceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCc-----cceEEE
Confidence 34556678899999999999999998743 233456889999999999999999999999988775 678999
Q ss_pred EeccchHHHHHHHHHHHhCC-----------CCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHH--------
Q psy12466 438 VTPSSLTSNWNDEFKKWLGL-----------TRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAY-------- 494 (680)
Q Consensus 438 V~P~sll~qW~~E~~~~~~~-----------~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~-------- 494 (680)
|+|-.++.||..||..|.|. +.|+++....+.-.. -..+.....|+++.|++++-..
T Consensus 318 ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~g 397 (1387)
T KOG1016|consen 318 IVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKG 397 (1387)
T ss_pred EEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccC
Confidence 99999999999999999975 123333332222111 1223456789999999997322
Q ss_pred ------------------------------HhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCH
Q psy12466 495 ------------------------------QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 495 ------------------------------~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~ 544 (680)
..|..-.+|+|||||+|+|||.....+.++..+++++|++|||-|+||++
T Consensus 398 rpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNL 477 (1387)
T KOG1016|consen 398 RPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNL 477 (1387)
T ss_pred CccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccch
Confidence 12344579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeeechhHHhhcCCCcEEEEE
Q psy12466 545 QEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624 (680)
Q Consensus 545 ~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v 624 (680)
.|.|.|++|++|+++|++.+|.+.|+.||..|...+++.....+...+.+.|+.++..|+.||+-..+..-||.+.|.++
T Consensus 478 lEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyVi 557 (1387)
T KOG1016|consen 478 LEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVI 557 (1387)
T ss_pred HHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHh--ch---hhHHHHHHHHHHhccCccccCCC
Q psy12466 625 VCRATPLQQSLYLRCVEYWDARA--SR---DSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 625 ~v~ms~~Q~~lY~~l~~~~~~~~--~~---~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
-|.||..||++|+.++....... +. -..|.++...-||.|||++++..
T Consensus 558 Lvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~ 610 (1387)
T KOG1016|consen 558 LVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRL 610 (1387)
T ss_pred EEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHH
Confidence 99999999999999885554432 11 14577788889999999987643
No 15
>KOG1002|consensus
Probab=100.00 E-value=5.2e-40 Score=343.20 Aligned_cols=288 Identities=25% Similarity=0.339 Sum_probs=225.6
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
....|..+.-.|.|||++|+.|+..+ ..+...|||||||||+|||+|+|+++..-.. ..|+|||||.-
T Consensus 174 ~aeqP~dlii~LL~fQkE~l~Wl~~Q----E~Ss~~GGiLADEMGMGKTIQtIaLllae~~--------ra~tLVvaP~V 241 (791)
T KOG1002|consen 174 RAEQPDDLIIPLLPFQKEGLAWLTSQ----EESSVAGGILADEMGMGKTIQTIALLLAEVD--------RAPTLVVAPTV 241 (791)
T ss_pred cccCcccceecchhhhHHHHHHHHHh----hhhhhccceehhhhccchHHHHHHHHHhccc--------cCCeeEEccHH
Confidence 34567778888999999999999875 3456789999999999999999999876222 23599999999
Q ss_pred hHHHHHHHHHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh-----------------hhccCceE
Q psy12466 443 LTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-----------------IVDTEFDL 504 (680)
Q Consensus 443 ll~qW~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-----------------l~~~~~~~ 504 (680)
.+.||.+||.+++. ..++.+|||..+.. +......+++|+|||..+...+.. |.+..|..
T Consensus 242 AlmQW~nEI~~~T~gslkv~~YhG~~R~~--nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~R 319 (791)
T KOG1002|consen 242 ALMQWKNEIERHTSGSLKVYIYHGAKRDK--NIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYR 319 (791)
T ss_pred HHHHHHHHHHHhccCceEEEEEecccccC--CHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeee
Confidence 99999999999984 56788888876544 333445799999999998765543 45678999
Q ss_pred EEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHH---------------------
Q psy12466 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLR--------------------- 563 (680)
Q Consensus 505 vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~--------------------- 563 (680)
||+||||.||+..+.+.+++..|.+.+||+|||||+||++.|||++++||+.++|.-+-
T Consensus 320 iIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~ 399 (791)
T KOG1002|consen 320 IILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDH 399 (791)
T ss_pred eehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCc
Confidence 99999999999999999999999999999999999999999999999999888764210
Q ss_pred ----------HHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeeechhHHhh--cCCCcEEEEEEecCCHH
Q psy12466 564 ----------EFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS--LLNSKRETLLVCRATPL 631 (680)
Q Consensus 564 ----------~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrtk~~v~~--~LP~k~e~~v~v~ms~~ 631 (680)
-|......||...+..+ .+.+.....+.+++..|+||||=+-.. .|||....+..=-++.+
T Consensus 400 c~h~~m~h~~~~n~~mlk~IqkfG~eG-------pGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~e 472 (791)
T KOG1002|consen 400 CSHNIMQHTCFFNHFMLKPIQKFGVEG-------PGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEE 472 (791)
T ss_pred ccchhhhhhhhhcccccccchhhcccC-------chHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhH
Confidence 01111112333322222 233444567888899999999843222 38999988888889999
Q ss_pred HHHHHHHHHHHHHHHh-----------chhhHHHHHHHHHHhccCccccCC
Q psy12466 632 QQSLYLRCVEYWDARA-----------SRDSHLSVTHALRKICNHPGLVQQ 671 (680)
Q Consensus 632 Q~~lY~~l~~~~~~~~-----------~~~~~l~~l~~LRqicnHP~L~~~ 671 (680)
++++|+.+-....... +.+.++..+++|||++.||+|+.-
T Consensus 473 E~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~ 523 (791)
T KOG1002|consen 473 EKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLY 523 (791)
T ss_pred HHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeee
Confidence 9999998765443322 567789999999999999999865
No 16
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5.5e-38 Score=377.67 Aligned_cols=294 Identities=37% Similarity=0.518 Sum_probs=248.7
Q ss_pred cccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 368 GFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 368 ~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
..+...|++||.+|++||... ......||||||+||+|||+|+|+++.......... .++.|||||.+++.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~----l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~---~~~~liv~p~s~~~nw 405 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSEL----LRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVY---LGPALIVVPASLLSNW 405 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHH----HHhccCCCcccccccchhHHHHHHHHHhhhhcccCC---CCCeEEEecHHHHHHH
Confidence 456788999999999999742 245678999999999999999999998855554321 4579999999999999
Q ss_pred HHHHHHHhCCCC-eeEeecCCcc----hhh--hhhhc---CCCCEEEEeHHHHHH---HHHhhhccCceEEEEcCccccc
Q psy12466 448 NDEFKKWLGLTR-MCPYHVNQKN----KAE--DYVYS---RVSPVLIISYEMLIR---AYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 448 ~~E~~~~~~~~~-v~~~~~~~~~----~~~--~~~~~---~~~~vvI~ty~~l~~---~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.+|+.+|.|..+ +..++|.... ... ..... ..++++++||+.+.+ +...+....|+++|+||||++|
T Consensus 406 ~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 406 KREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHh
Confidence 999999999999 8889887752 111 11111 128999999999999 8899999999999999999999
Q ss_pred CcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHh-hhCCCCCC-CHHHHHHHhhhhhhccCCCCChHHHHHhhhhH
Q psy12466 515 NGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLND-FANPGVLG-SLREFRKNFEEPILESRSPNSTEAQKSLGELR 592 (680)
Q Consensus 515 n~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~-fl~p~~l~-~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~ 592 (680)
|..+..+++++.+++.++++|||||++|++.|||++++ |++|+.++ +...|..+|..|+........ .......
T Consensus 486 n~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~ 561 (866)
T COG0553 486 NDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP----LEARELG 561 (866)
T ss_pred hhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc----hhhHHHH
Confidence 99999999999999999999999999999999999999 99999999 558999999999877665433 1222334
Q ss_pred HHHHHHHhccceeeechhH--HhhcCCCcEEEEEEecCCHHHHHHHHHHHH---HHHHHh------c---------hhhH
Q psy12466 593 SSQLAKRTAGFILRRTSDV--QASLLNSKRETLLVCRATPLQQSLYLRCVE---YWDARA------S---------RDSH 652 (680)
Q Consensus 593 ~~~L~~~l~~f~lRrtk~~--v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~---~~~~~~------~---------~~~~ 652 (680)
...|+.+++||++||++.+ +..+||++.+.++.|+|++.|+++|+.... ...... . ....
T Consensus 562 ~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (866)
T COG0553 562 IELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNI 641 (866)
T ss_pred HHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHH
Confidence 4558999999999999998 888999999999999999999999999988 333222 1 4568
Q ss_pred HHHHHHHHHhccCccccCCC
Q psy12466 653 LSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 653 l~~l~~LRqicnHP~L~~~~ 672 (680)
++.+++||++||||.++...
T Consensus 642 l~~~~~lr~~~~~p~l~~~~ 661 (866)
T COG0553 642 LALLTRLRQICNHPALVDEG 661 (866)
T ss_pred HHHHHHHHHhccCccccccc
Confidence 89999999999999999886
No 17
>KOG1000|consensus
Probab=100.00 E-value=7e-34 Score=298.01 Aligned_cols=253 Identities=26% Similarity=0.314 Sum_probs=204.6
Q ss_pred ccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH
Q psy12466 365 TVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444 (680)
Q Consensus 365 ~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll 444 (680)
.+|+.+...|.|||++||.|.+++ +++++||||||||||+|||+++.++...++ .|||||.++.
T Consensus 190 v~d~kLvs~LlPFQreGv~faL~R--------gGR~llADeMGLGKTiQAlaIA~yyraEwp--------lliVcPAsvr 253 (689)
T KOG1000|consen 190 VMDPKLVSRLLPFQREGVIFALER--------GGRILLADEMGLGKTIQALAIARYYRAEWP--------LLIVCPASVR 253 (689)
T ss_pred ccCHHHHHhhCchhhhhHHHHHhc--------CCeEEEecccccchHHHHHHHHHHHhhcCc--------EEEEecHHHh
Confidence 347788899999999999999874 688999999999999999999999999875 8999999999
Q ss_pred HHHHHHHHHHhCCCCe-eEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHH
Q psy12466 445 SNWNDEFKKWLGLTRM-CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYEL 523 (680)
Q Consensus 445 ~qW~~E~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~ 523 (680)
..|.+++.+|+|...- .+..+.+..-.. .-....|.|++|+++....+.+...+|.+||+||+|.+|+..++..++
T Consensus 254 ftWa~al~r~lps~~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka 330 (689)
T KOG1000|consen 254 FTWAKALNRFLPSIHPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKA 330 (689)
T ss_pred HHHHHHHHHhcccccceEEEecccCCccc---cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhh
Confidence 9999999999997543 333332221110 011345999999999999888988899999999999999999999999
Q ss_pred HHhc--ccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhc
Q psy12466 524 MTGL--NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTA 601 (680)
Q Consensus 524 l~~l--~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 601 (680)
+..+ .+.|.++|||||--.++.|||.++..+++.+|++..+|..+|++.-..+...+ ..+-.+..+|+.+|.
T Consensus 331 ~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D------ykg~tnl~EL~~lL~ 404 (689)
T KOG1000|consen 331 ATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD------YKGCTNLEELAALLF 404 (689)
T ss_pred hhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee------cCCCCCHHHHHHHHH
Confidence 8877 78899999999999999999999999999999999999999998433222222 234456778888875
Q ss_pred c-ceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHH
Q psy12466 602 G-FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYW 643 (680)
Q Consensus 602 ~-f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~ 643 (680)
. .|+||+|.+|..+||+|..+++ +...+.+-+..++++...
T Consensus 405 k~lMIRRlK~dvL~qLPpKrr~Vv-~~~~gr~da~~~~lv~~a 446 (689)
T KOG1000|consen 405 KRLMIRRLKADVLKQLPPKRREVV-YVSGGRIDARMDDLVKAA 446 (689)
T ss_pred HHHHHHHHHHHHHhhCCccceEEE-EEcCCccchHHHHHHHHh
Confidence 4 5999999999999999955544 445555555555555433
No 18
>KOG0383|consensus
Probab=99.98 E-value=1.7e-33 Score=315.40 Aligned_cols=278 Identities=33% Similarity=0.450 Sum_probs=243.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
..|.+||.+|++|+... ...+..+|||||||+|||+++++++..+...+... .|.|+++|.+.+.+|..|+
T Consensus 294 g~L~~~qleGln~L~~~-----ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~----~P~Lv~ap~sT~~nwe~e~ 364 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRIS-----WSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSP----GPPLVVAPLSTIVNWEREF 364 (696)
T ss_pred ccccccchhhhhhhhcc-----cccCCCcccchhhcCCceeeEEEEEeecccccCCC----CCceeeccCccccCCCCch
Confidence 67999999999999764 46778899999999999999999998887766432 3589999999999999999
Q ss_pred HHHhCCCCeeEeecCCcchhh---------hh-------------hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcC
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAE---------DY-------------VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDE 509 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~---------~~-------------~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDE 509 (680)
..|.|+..+..+.|....+.. +. ...-.+.+.+++|++...+...+....|.++|+||
T Consensus 365 ~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livde 444 (696)
T KOG0383|consen 365 ELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVDE 444 (696)
T ss_pred hccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEeec
Confidence 999999999999887764321 00 11234678999999999888889999999999999
Q ss_pred cccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhh
Q psy12466 510 GHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589 (680)
Q Consensus 510 aH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~ 589 (680)
+|+++|..+...+.+......+++++||||.+|++.+|+++|+|+.|+.|.+...|.+.|... ..
T Consensus 445 ~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~---------------~~ 509 (696)
T KOG0383|consen 445 AHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI---------------SC 509 (696)
T ss_pred hhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------hH
Confidence 999999999999999999999999999999999999999999999999999999998888762 24
Q ss_pred hhHHHHHHHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh----chhhHHHHHHHHHHhccC
Q psy12466 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA----SRDSHLSVTHALRKICNH 665 (680)
Q Consensus 590 ~~~~~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~----~~~~~l~~l~~LRqicnH 665 (680)
.+....|+.++.|+++||.+.++...+|.|.+-++.+.|++.|+++|+.++......+ .....++++|.|||+|||
T Consensus 510 ~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~h 589 (696)
T KOG0383|consen 510 EEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNH 589 (696)
T ss_pred HHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcC
Confidence 5667889999999999999999998899999999999999999999999987655444 445678999999999999
Q ss_pred ccccCCCC
Q psy12466 666 PGLVQQPD 673 (680)
Q Consensus 666 P~L~~~~~ 673 (680)
|+++...+
T Consensus 590 py~~~~~e 597 (696)
T KOG0383|consen 590 PYLSPLEE 597 (696)
T ss_pred cccCcccc
Confidence 99998843
No 19
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=9.8e-30 Score=299.00 Aligned_cols=254 Identities=23% Similarity=0.323 Sum_probs=183.1
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWND 449 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~ 449 (680)
....|.|||...+..+..+ ...++|||||||||||++|++++..+...+. ++|+|||||.+|+.||..
T Consensus 149 ~~~~l~pHQl~~~~~vl~~-------~~~R~LLADEvGLGKTIeAglil~~l~~~g~-----~~rvLIVvP~sL~~QW~~ 216 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRR-------HAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-----AERVLILVPETLQHQWLV 216 (956)
T ss_pred CCCCCCHHHHHHHHHHhhc-------cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-----CCcEEEEcCHHHHHHHHH
Confidence 3456999999999877543 4578999999999999999999998877664 567999999999999999
Q ss_pred HHHHHhCCCCeeEeecCCcchh--hhhhhcCCCCEEEEeHHHHHHH---HHhhhccCceEEEEcCcccccC---cccHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKA--EDYVYSRVSPVLIISYEMLIRA---YQTIVDTEFDLLICDEGHRLKN---GKSKLY 521 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~vvI~ty~~l~~~---~~~l~~~~~~~vIlDEaH~~kn---~~s~~~ 521 (680)
|+.+++. ..+.++........ .........+++|+||+.+.++ .+.+....|++||+||||++++ ..++.+
T Consensus 217 El~~kF~-l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 217 EMLRRFN-LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HHHHHhC-CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 9988775 34444443321111 0111223578999999999863 3456678999999999999985 356678
Q ss_pred HHHHhc--ccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhh--hh-------hccCCCCChHHHHH---
Q psy12466 522 ELMTGL--NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEE--PI-------LESRSPNSTEAQKS--- 587 (680)
Q Consensus 522 ~~l~~l--~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~--~i-------~~~~~~~~~~~~~~--- 587 (680)
+.+..+ +++++++|||||++|+..|+|++++||+|+.|+++..|.+..+. |+ ..+...........
T Consensus 296 ~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~l 375 (956)
T PRK04914 296 QVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGEL 375 (956)
T ss_pred HHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 888888 67799999999999999999999999999999999999875543 21 11111010000000
Q ss_pred hh------------------h-hHHHHHHHH-----hccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHH
Q psy12466 588 LG------------------E-LRSSQLAKR-----TAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYL 637 (680)
Q Consensus 588 ~~------------------~-~~~~~L~~~-----l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~ 637 (680)
++ . .+...+..+ ...+|+|+++.++. .+|.+..+.+.++|++..+..+.
T Consensus 376 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~ 448 (956)
T PRK04914 376 LGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIK 448 (956)
T ss_pred hcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHH
Confidence 00 0 011112222 23689999999986 69999999999999776655543
No 20
>KOG1001|consensus
Probab=99.96 E-value=2.3e-29 Score=286.03 Aligned_cols=280 Identities=24% Similarity=0.328 Sum_probs=224.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC--CCCCccceEEEEeccchHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP--YGMPVIRKVLIVTPSSLTSNWNDEFKKWL 455 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~--~~~~~~~~~LIV~P~sll~qW~~E~~~~~ 455 (680)
|.....|++... .......|||+||+||+|||+++++++.......+ .+....+.+|||||.+++.||..|+.+..
T Consensus 135 ~~~~~~~~~~~~--~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~ 212 (674)
T KOG1001|consen 135 LKQKYRWSLLKS--REQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVT 212 (674)
T ss_pred HHHHHHHHhhcc--cccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccC
Confidence 555555655432 34567789999999999999999999877654433 00112456999999999999999995554
Q ss_pred C--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEE
Q psy12466 456 G--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRI 533 (680)
Q Consensus 456 ~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rl 533 (680)
. .+.+.+|+| +.........++||+|||.++.. ..+....|-++|+||||.++|.+++.++++..+.+.+||
T Consensus 213 ~~~~l~v~v~~g----r~kd~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RW 286 (674)
T KOG1001|consen 213 EEDKLSIYVYHG----RTKDKSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRW 286 (674)
T ss_pred CccceEEEEecc----cccccchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeeccceee
Confidence 3 355666776 22233333467899999999975 455668999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeeechhHH-
Q psy12466 534 LLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQ- 612 (680)
Q Consensus 534 lLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrtk~~v- 612 (680)
+|||||++|++.|+|+++.|+.-.++.....|...+..|+..... ......++.+++.+++||+|...
T Consensus 287 cLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-----------~~~~k~l~~~L~~v~lrrtK~~~~ 355 (674)
T KOG1001|consen 287 CLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-----------KEGVKTLQGILKKVMLRRTKEMEV 355 (674)
T ss_pred eecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-----------HHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999988754322 23456788899999999998522
Q ss_pred ----hhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-----------chhhHHHHHHHHHHhccCccccCCCCCcc
Q psy12466 613 ----ASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA-----------SRDSHLSVTHALRKICNHPGLVQQPDMME 676 (680)
Q Consensus 613 ----~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-----------~~~~~l~~l~~LRqicnHP~L~~~~~~~~ 676 (680)
...||++...++.+.++..++..|..+........ +...++..+.+|||+||||.|+....+..
T Consensus 356 ~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~ 434 (674)
T KOG1001|consen 356 DGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSL 434 (674)
T ss_pred cCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhcc
Confidence 23699999999999999999999999887665443 44567888999999999999998765543
No 21
>KOG0298|consensus
Probab=99.91 E-value=1.6e-24 Score=249.01 Aligned_cols=264 Identities=18% Similarity=0.231 Sum_probs=201.6
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhc-----------CCCCCCccceEEEEeccchHHHHHHHHHHHhCCC-Cee
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQ-----------GPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLT-RMC 461 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~-----------~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~-~v~ 461 (680)
...+..+++|||||+|||...+++....... .....-..+.+|||||++++.||-.||.++++.. +++
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEE
Confidence 3345567999999999999988875443211 0011122467999999999999999999999887 888
Q ss_pred EeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh----------------------hhccCceEEEEcCcccccCcccH
Q psy12466 462 PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT----------------------IVDTEFDLLICDEGHRLKNGKSK 519 (680)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~----------------------l~~~~~~~vIlDEaH~~kn~~s~ 519 (680)
.|.|..+.--......-.+|||+|||+.++..+.. |....|-+||+||||.+....|.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~ 530 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSA 530 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHH
Confidence 88876544322223335799999999999876532 23356899999999999999999
Q ss_pred HHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHH
Q psy12466 520 LYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKR 599 (680)
Q Consensus 520 ~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~ 599 (680)
.++.+..|.+.++|++||||+++ +.||+.+|.||.-.+|.....|......++.. ......+.++
T Consensus 531 ~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~--------------ra~~~~~~dl 595 (1394)
T KOG0298|consen 531 AAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQL--------------RAKCEPLLDL 595 (1394)
T ss_pred HHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHH--------------HhhhhhHHHH
Confidence 99999999999999999999999 99999999999999999999987777664421 1334567888
Q ss_pred hccceeeechhHHhh--cCCCcEEEEEEecCCHHHHHHHH----HHHHHHHHHh--------------------chhhHH
Q psy12466 600 TAGFILRRTSDVQAS--LLNSKRETLLVCRATPLQQSLYL----RCVEYWDARA--------------------SRDSHL 653 (680)
Q Consensus 600 l~~f~lRrtk~~v~~--~LP~k~e~~v~v~ms~~Q~~lY~----~l~~~~~~~~--------------------~~~~~l 653 (680)
+...+-|+.+..+.. .+|+..+.+-...+++.|-.+|+ ..+.++.... ....++
T Consensus 596 ~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~ 675 (1394)
T KOG0298|consen 596 FKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIIL 675 (1394)
T ss_pred HHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHH
Confidence 888999999877755 47888888888888888766654 3444443222 223467
Q ss_pred HHHHHHHHhccCccccCCC
Q psy12466 654 SVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 654 ~~l~~LRqicnHP~L~~~~ 672 (680)
..+.+|||+||||...+.-
T Consensus 676 ~~l~rLRq~Cchplv~~~~ 694 (1394)
T KOG0298|consen 676 KWLLRLRQACCHPLVGNSN 694 (1394)
T ss_pred HHHHHHHHhhcccccccCC
Confidence 8899999999999876543
No 22
>KOG0387|consensus
Probab=99.88 E-value=1.4e-22 Score=224.04 Aligned_cols=108 Identities=21% Similarity=0.303 Sum_probs=96.2
Q ss_pred CCCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh-------------hcccCCCCEEEEehhHHHHHHHh
Q psy12466 190 SYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED-------------YVYSRVSPVLIISYEMLIRAYQT 256 (680)
Q Consensus 190 ~~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~V~itsYe~l~~~~~~ 256 (680)
...+++|||||++++.||.+||.+|.|..++.+||+.+...+.. .......+|+||||+.++...+.
T Consensus 253 k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~ 332 (923)
T KOG0387|consen 253 KLTKPALIVCPATIIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDD 332 (923)
T ss_pred cccCceEEEccHHHHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcc
Confidence 34689999999999999999999999999999999988632211 11234467999999999999999
Q ss_pred hhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccC
Q psy12466 257 IVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSG 297 (680)
Q Consensus 257 l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG 297 (680)
+..+.|+++|+||||+||||+|+++.+|++|++.+||+|||
T Consensus 333 l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSG 373 (923)
T KOG0387|consen 333 LLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSG 373 (923)
T ss_pred cccccccEEEecCcccccCCccHHHHHHHhccccceEEeeC
Confidence 99999999999999999999999999999999999999999
No 23
>KOG0390|consensus
Probab=99.86 E-value=1.1e-21 Score=222.32 Aligned_cols=146 Identities=31% Similarity=0.413 Sum_probs=122.6
Q ss_pred CCccCCCCCCCCCCchhHHh-----------------------------------------------hcCCCCCeEEEEE
Q psy12466 167 AKTEVNPLILPKPIVDHQEK-----------------------------------------------NRRSYILRVLIVT 199 (680)
Q Consensus 167 ~~~~~~p~~l~~~L~~hQ~~-----------------------------------------------~~~~~~~~~LIV~ 199 (680)
....++| .+.+.|+|||+| +..+.|++.||||
T Consensus 227 v~v~~dP-~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~ 305 (776)
T KOG0390|consen 227 VHVVIDP-LLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVA 305 (776)
T ss_pred ceEEecc-cHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEc
Confidence 5667899 899999999998 3345689999999
Q ss_pred CcccHHHHHHHHHHHhCCCCeeEEeecCCcch---------hhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 200 PSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA---------EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 200 P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
|+||+.||++||.||....++..+..++..+. ..........|+++|||+++.+.+.+....++++|||||
T Consensus 306 P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEG 385 (776)
T KOG0390|consen 306 PSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEG 385 (776)
T ss_pred cHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCC
Confidence 99999999999999998667777777665542 122233446799999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCceeccCCCCCCCCCCchhhhHHHhh
Q psy12466 271 SLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQ 316 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l~~~~r~~LTG~~~~~~~~~~~e~~~~~~~ 316 (680)
|++||..+++.+++.++++.+|++|||+ +.++.+.|+..-...
T Consensus 386 HrlkN~~s~~~kaL~~l~t~rRVLLSGT---p~QNdl~EyFnlL~f 428 (776)
T KOG0390|consen 386 HRLKNSDSLTLKALSSLKTPRRVLLTGT---PIQNDLKEYFNLLDF 428 (776)
T ss_pred CCccchhhHHHHHHHhcCCCceEEeeCC---cccccHHHHHHHHhh
Confidence 9999999999999999999999999985 477877777654433
No 24
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=3.5e-20 Score=211.99 Aligned_cols=150 Identities=19% Similarity=0.400 Sum_probs=114.6
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~ 449 (680)
...|||||.+++.+++.. ...++|+|..+||+|||+++++++..+. +++|||||.. ++.||.+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~------gr~r~GIIvLPtGaGKTlvai~aa~~l~----------k~tLILvps~~Lv~QW~~ 316 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKSLVGVTAACTVK----------KSCLVLCTSAVSVEQWKQ 316 (732)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCCcEEEeCCCCChHHHHHHHHHHhC----------CCEEEEeCcHHHHHHHHH
Confidence 468999999999988642 2236899999999999999999887652 2499999985 5799999
Q ss_pred HHHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHH----------HHhhhccCceEEEEcCcccccCcc
Q psy12466 450 EFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA----------YQTIVDTEFDLLICDEGHRLKNGK 517 (680)
Q Consensus 450 E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~----------~~~l~~~~~~~vIlDEaH~~kn~~ 517 (680)
+|.+|+. ...+..+.+..+... ....+|+|+||+++... ++.+....|++||+||||++.+
T Consensus 317 ef~~~~~l~~~~I~~~tg~~k~~~-----~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA-- 389 (732)
T TIGR00603 317 QFKMWSTIDDSQICRFTSDAKERF-----HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA-- 389 (732)
T ss_pred HHHHhcCCCCceEEEEecCccccc-----ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--
Confidence 9999974 334455554332211 23478999999998532 3445567899999999999943
Q ss_pred cHHHHHHHhcccceEEEEeCCCCCCC
Q psy12466 518 SKLYELMTGLNIRKRILLSGTPLQND 543 (680)
Q Consensus 518 s~~~~~l~~l~~~~rllLTgTP~~n~ 543 (680)
....+.+..+.+.+||+|||||++++
T Consensus 390 ~~fr~il~~l~a~~RLGLTATP~ReD 415 (732)
T TIGR00603 390 AMFRRVLTIVQAHCKLGLTATLVRED 415 (732)
T ss_pred HHHHHHHHhcCcCcEEEEeecCcccC
Confidence 34445677789999999999999876
No 25
>KOG0385|consensus
Probab=99.81 E-value=1.1e-20 Score=208.09 Aligned_cols=111 Identities=22% Similarity=0.297 Sum_probs=100.0
Q ss_pred CCCCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchh---hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEE
Q psy12466 189 RSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLL 265 (680)
Q Consensus 189 ~~~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~v 265 (680)
+....+.||+||.|++.||.+||++|+|..++.+|+|+...+.. .......++|+|||||+..++...|.+.+|.++
T Consensus 214 ~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~yl 293 (971)
T KOG0385|consen 214 KGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYL 293 (971)
T ss_pred cCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEE
Confidence 44466899999999999999999999999999999999865443 233445789999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|+||||||||.++..++.++.+.+..|++|||+.
T Consensus 294 vIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTP 327 (971)
T KOG0385|consen 294 VIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTP 327 (971)
T ss_pred EechhhhhcchhhHHHHHHHHhcccceeEeeCCc
Confidence 9999999999999999999999999999999953
No 26
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.76 E-value=3.8e-19 Score=210.61 Aligned_cols=129 Identities=20% Similarity=0.270 Sum_probs=109.5
Q ss_pred CCCCCCCCCCchhHHh-------------------------------------hcCCCCCeEEEEECcccHHHHHHHHHH
Q psy12466 171 VNPLILPKPIVDHQEK-------------------------------------NRRSYILRVLIVTPSSLTSNWNDEFKK 213 (680)
Q Consensus 171 ~~p~~l~~~L~~hQ~~-------------------------------------~~~~~~~~~LIV~P~sl~~nW~~E~~k 213 (680)
.+|..+...|++||.+ ..+....++|||||+|++.||.+||.+
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~k 240 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRR 240 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHH
Confidence 4566677789999988 122345689999999999999999999
Q ss_pred HhCCCCeeEEeecCCcchh---hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCC
Q psy12466 214 WLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSL 290 (680)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~ 290 (680)
|+|..++..|+++...+.. .......++|+||||+++.+....|.+..|++|||||||+|||++++++++++.+.+.
T Consensus 241 w~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~ 320 (1033)
T PLN03142 241 FCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTN 320 (1033)
T ss_pred HCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcC
Confidence 9998888888887644322 1223356899999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCC
Q psy12466 291 PRKSDSGIG 299 (680)
Q Consensus 291 ~r~~LTG~~ 299 (680)
+|++|||+.
T Consensus 321 ~RLLLTGTP 329 (1033)
T PLN03142 321 YRLLITGTP 329 (1033)
T ss_pred cEEEEecCC
Confidence 999999964
No 27
>KOG0392|consensus
Probab=99.75 E-value=5.9e-19 Score=202.02 Aligned_cols=105 Identities=20% Similarity=0.327 Sum_probs=97.3
Q ss_pred eEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCCC
Q psy12466 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLL 273 (680)
Q Consensus 194 ~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~l 273 (680)
+.|||||.+|.++|+.|++||+|..++..|+|....+....-....++|+||||+.+|++.+.+.++.|.++|+||||.|
T Consensus 1033 PSLIVCPsTLtGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1033 PSLIVCPSTLTGHWKSEVKKFFPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred CeEEECCchhhhHHHHHHHHhcchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCccee
Confidence 57999999999999999999999989999998876666655555678999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCceeccCC
Q psy12466 274 KPPSGNSPGNDSGIPSLPRKSDSGI 298 (680)
Q Consensus 274 KN~~s~~~~a~~~l~~~~r~~LTG~ 298 (680)
||.+++.+++++.|++.+|++|||+
T Consensus 1113 kN~ktkl~kavkqL~a~hRLILSGT 1137 (1549)
T KOG0392|consen 1113 KNSKTKLTKAVKQLRANHRLILSGT 1137 (1549)
T ss_pred cchHHHHHHHHHHHhhcceEEeeCC
Confidence 9999999999999999999999984
No 28
>KOG1002|consensus
Probab=99.74 E-value=2.8e-18 Score=180.92 Aligned_cols=138 Identities=19% Similarity=0.243 Sum_probs=112.0
Q ss_pred ccccccCCCccCCCCCCCCCCchhHHh----------------------------------hcCCCCCeEEEEECcccHH
Q psy12466 160 KSRLSLHAKTEVNPLILPKPIVDHQEK----------------------------------NRRSYILRVLIVTPSSLTS 205 (680)
Q Consensus 160 ~~~~~~~~~~~~~p~~l~~~L~~hQ~~----------------------------------~~~~~~~~~LIV~P~sl~~ 205 (680)
..+.+......-+|..|.-||+|+|+| .....-.++|||||...+.
T Consensus 165 de~~p~i~e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VAlm 244 (791)
T KOG1002|consen 165 DEANPVIAERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVALM 244 (791)
T ss_pred hhcCchhhhcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccHHHHH
Confidence 345556667778899999999999998 1112334689999999999
Q ss_pred HHHHHHHHHh-CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH-----------------hhhcCCCcEEEE
Q psy12466 206 NWNDEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-----------------TIVDTEFDLLIC 267 (680)
Q Consensus 206 nW~~E~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-----------------~l~~~~~~~vI~ 267 (680)
||++||.+++ +..++.+|||..+..... ....|+|++|||..+...++ .|+.+.|..||+
T Consensus 245 QW~nEI~~~T~gslkv~~YhG~~R~~nik--el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIl 322 (791)
T KOG1002|consen 245 QWKNEIERHTSGSLKVYIYHGAKRDKNIK--ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIIL 322 (791)
T ss_pred HHHHHHHHhccCceEEEEEecccccCCHH--HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeeh
Confidence 9999999998 556677777765544333 33679999999999876443 367788999999
Q ss_pred cCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 268 DEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 268 DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
||||.||+..+.+++|+..|.+.+||+|+|+.
T Consensus 323 DEAH~IK~R~snTArAV~~L~tt~rw~LSGTP 354 (791)
T KOG1002|consen 323 DEAHNIKDRQSNTARAVFALETTYRWCLSGTP 354 (791)
T ss_pred hhhcccccccccHHHHHHhhHhhhhhhccCCc
Confidence 99999999999999999999999999999864
No 29
>KOG0389|consensus
Probab=99.73 E-value=1.9e-18 Score=191.36 Aligned_cols=115 Identities=25% Similarity=0.309 Sum_probs=97.6
Q ss_pred CCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh----hcccCCCCEEEEehhHHHH---HHHhhhcCCCcE
Q psy12466 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIR---AYQTIVDTEFDL 264 (680)
Q Consensus 192 ~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~---~~~~l~~~~~~~ 264 (680)
-.+-|||||+|++.||.+||.||||..++..|||+...+... ......++|++|+|.++.. +...|...+|++
T Consensus 448 ~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~ 527 (941)
T KOG0389|consen 448 PGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNY 527 (941)
T ss_pred CCCcEEEecchhHHHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccE
Confidence 346799999999999999999999999999999998654432 1123478999999999964 455788899999
Q ss_pred EEEcCCCCCCCCCCCCCccccCCCCCCceeccCCCCCCCCCCchh
Q psy12466 265 LICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEE 309 (680)
Q Consensus 265 vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~~~~~~~~~~e 309 (680)
+|+||||.|||..|.+++.+..|++..|++|||+. .+.-|.|
T Consensus 528 viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTP---LQNNL~E 569 (941)
T KOG0389|consen 528 VIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTP---LQNNLKE 569 (941)
T ss_pred EEecchhhhhccchHHHHHhccccccceEEeeCCc---ccccHHH
Confidence 99999999999999999999999999999999864 5554444
No 30
>KOG1016|consensus
Probab=99.73 E-value=2.5e-18 Score=188.39 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=130.6
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCcccccccCCCccCCCCCCCCCCchhHHh----------------------------
Q psy12466 135 AQTSSVNAQTSSVSASSSLPWRPVKKSRLSLHAKTEVNPLILPKPIVDHQEK---------------------------- 186 (680)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~L~~hQ~~---------------------------- 186 (680)
....+++...++++..+++ -++..+++......+.| .++.-++|||..
T Consensus 214 k~g~hvkD~~n~~d~~Grv---~VN~~HPeeee~iflap-qla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAH 289 (1387)
T KOG1016|consen 214 KKGRHVKDLENTEDKEGRV---LVNAGHPEEEEDIFLAP-QLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAH 289 (1387)
T ss_pred ccCcchhhhhcCccccCcE---EEecCCCCCCcceeehh-hhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeee
Confidence 4667788888889999998 77888899988999999 899999999986
Q ss_pred -----------------hcCCCCCeEEEEECcccHHHHHHHHHHHhCC--------C-CeeEEeecCCcch------hhh
Q psy12466 187 -----------------NRRSYILRVLIVTPSSLTSNWNDEFKKWLGL--------T-RMCPYHVNQKNKA------EDY 234 (680)
Q Consensus 187 -----------------~~~~~~~~~LIV~P~sl~~nW~~E~~k~~~~--------~-~~~~~~~~~~~~~------~~~ 234 (680)
.+...++++|+|+|..++.||..||++|.|. . .+.++..+...+. ...
T Consensus 290 SMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~ 369 (1387)
T KOG1016|consen 290 SMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIE 369 (1387)
T ss_pred ccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHH
Confidence 3444678999999999999999999999974 1 1334444332211 113
Q ss_pred cccCCCCEEEEehhHHHHHH--------------------------------------HhhhcCCCcEEEEcCCCCCCCC
Q psy12466 235 VYSRVSPVLIISYEMLIRAY--------------------------------------QTIVDTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 235 ~~~~~~~V~itsYe~l~~~~--------------------------------------~~l~~~~~~~vI~DEaH~lKN~ 276 (680)
.|-..++|+++.||++|... ..|.+.++|+|||||||||||.
T Consensus 370 ~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~ 449 (1387)
T KOG1016|consen 370 QWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNI 449 (1387)
T ss_pred HHhccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccc
Confidence 47778999999999998643 1256677999999999999999
Q ss_pred CCCCCccccCCCCCCceeccCCC
Q psy12466 277 SGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 277 ~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
.+.++.|++.|++++|++|||+.
T Consensus 450 ~A~iS~aLk~IrtrRRiVLTGYP 472 (1387)
T KOG1016|consen 450 TAEISMALKAIRTRRRIVLTGYP 472 (1387)
T ss_pred hHHHHHHHHHhhhceeEEEeccc
Confidence 99999999999999999999953
No 31
>KOG1015|consensus
Probab=99.73 E-value=1.2e-18 Score=194.28 Aligned_cols=118 Identities=24% Similarity=0.365 Sum_probs=95.5
Q ss_pred CCCCeEEEEECcccHHHHHHHHHHHhCC----CCeeEEeecCCcch-----hhhcccCCCCEEEEehhHHHHHH------
Q psy12466 190 SYILRVLIVTPSSLTSNWNDEFKKWLGL----TRMCPYHVNQKNKA-----EDYVYSRVSPVLIISYEMLIRAY------ 254 (680)
Q Consensus 190 ~~~~~~LIV~P~sl~~nW~~E~~k~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~V~itsYe~l~~~~------ 254 (680)
..++++|||||.+++.||.+||.+|.+. ..+.++..+...+. ....|...++|+|+.|+++|...
T Consensus 726 lg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk 805 (1567)
T KOG1015|consen 726 LGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVK 805 (1567)
T ss_pred cCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchh
Confidence 4578999999999999999999999974 24556655543321 12447788899999999999743
Q ss_pred ---------HhhhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCCCCCCCCCchhh
Q psy12466 255 ---------QTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEES 310 (680)
Q Consensus 255 ---------~~l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~~~~~~~~~~e~ 310 (680)
..|.+.++|+|||||||.|||..+.+++|+..+.+++||+|||+ |.+.-|+|+
T Consensus 806 ~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGT---PLQNNLmEY 867 (1567)
T KOG1015|consen 806 SRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGT---PLQNNLMEY 867 (1567)
T ss_pred hhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecC---chhhhhHHH
Confidence 23566889999999999999999999999999999999999985 456666665
No 32
>KOG4439|consensus
Probab=99.73 E-value=8e-19 Score=191.86 Aligned_cols=132 Identities=18% Similarity=0.264 Sum_probs=104.7
Q ss_pred CCCccCCCCCCCCCCchhHHh---------------------------------------------hcCCCCCeEEEEEC
Q psy12466 166 HAKTEVNPLILPKPIVDHQEK---------------------------------------------NRRSYILRVLIVTP 200 (680)
Q Consensus 166 ~~~~~~~p~~l~~~L~~hQ~~---------------------------------------------~~~~~~~~~LIV~P 200 (680)
..+..-+|.++..+|+|||+. ...+...++|||||
T Consensus 312 et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P 391 (901)
T KOG4439|consen 312 ETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP 391 (901)
T ss_pred cccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc
Confidence 344456788899999999976 12223446999999
Q ss_pred cccHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHH----------HHHhhhcCCCcEEEEc
Q psy12466 201 SSLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIR----------AYQTIVDTEFDLLICD 268 (680)
Q Consensus 201 ~sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~----------~~~~l~~~~~~~vI~D 268 (680)
+||+.||..||++-+.. .++..|||.++ +.........|+||||||..+.+ ....|..+.|.+||+|
T Consensus 392 aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILD 470 (901)
T KOG4439|consen 392 ASLIHQWEAEVARRLEQNALSVYLYHGPNK-REISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILD 470 (901)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEecCCcc-ccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhh
Confidence 99999999999999854 45556666553 22233344789999999999987 1224777889999999
Q ss_pred CCCCCCCCCCCCCccccCCCCCCceeccCC
Q psy12466 269 EKSLLKPPSGNSPGNDSGIPSLPRKSDSGI 298 (680)
Q Consensus 269 EaH~lKN~~s~~~~a~~~l~~~~r~~LTG~ 298 (680)
|||.|||++++.+.|+..|.+.+||+|||+
T Consensus 471 EAH~IrN~~tq~S~AVC~L~a~~RWclTGT 500 (901)
T KOG4439|consen 471 EAHNIRNSNTQCSKAVCKLSAKSRWCLTGT 500 (901)
T ss_pred hhhhhcccchhHHHHHHHHhhcceeecccC
Confidence 999999999999999999999999999984
No 33
>KOG0391|consensus
Probab=99.72 E-value=1e-18 Score=197.93 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=95.9
Q ss_pred eEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchh---hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 194 ~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
+-|||+|+|++-||+-||++|||.+++..|+|..+.+.. .+.....+.|+||||.++..+...+.+.+|.++|+|||
T Consensus 667 PHLIVVpTsviLnWEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 667 PHLIVVPTSVILNWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEA 746 (1958)
T ss_pred CceEEeechhhhhhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhh
Confidence 459999999999999999999999999999999875443 34445668899999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCceeccC
Q psy12466 271 SLLKPPSGNSPGNDSGIPSLPRKSDSG 297 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l~~~~r~~LTG 297 (680)
|+|||.+++.++|+..+++++|++|||
T Consensus 747 qnIKnfksqrWQAllnfnsqrRLLLtg 773 (1958)
T KOG0391|consen 747 QNIKNFKSQRWQALLNFNSQRRLLLTG 773 (1958)
T ss_pred hhhcchhHHHHHHHhccchhheeeecC
Confidence 999999999999999999999999999
No 34
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.70 E-value=2.8e-16 Score=152.96 Aligned_cols=155 Identities=25% Similarity=0.391 Sum_probs=109.8
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+|||||.+++..+.+.+... ...+.+++..++|+|||.++++++..+.. ++||+||. +++.||.++|
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~--~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENK--KEERRVLLNAPTGSGKTIIALALILELAR----------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTT--SGCSEEEEEESTTSSHHHHHHHHHHHHHC----------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc--CCCCCEEEEECCCCCcChhhhhhhhcccc----------ceeEecCHHHHHHHHHHHH
Confidence 59999999999988753211 13688999999999999999998888776 38999998 8889999999
Q ss_pred HHHhCCCCeeEeecC-------------CcchhhhhhhcCCCCEEEEeHHHHHHHHHh-------------hhccCceEE
Q psy12466 452 KKWLGLTRMCPYHVN-------------QKNKAEDYVYSRVSPVLIISYEMLIRAYQT-------------IVDTEFDLL 505 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~-------------~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-------------l~~~~~~~v 505 (680)
..+............ ..............++++++|+.+...... .....+++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 887765433321110 000111122335678999999999876543 233478999
Q ss_pred EEcCcccccCcccHHHHHHHhcccceEEEEeCCCCC
Q psy12466 506 ICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541 (680)
Q Consensus 506 IlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~ 541 (680)
|+||||++.+... ++.+......++++|||||.+
T Consensus 151 I~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 151 IIDEAHHYPSDSS--YREIIEFKAAFILGLTATPFR 184 (184)
T ss_dssp EEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S-
T ss_pred EEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCccC
Confidence 9999999854332 666666888999999999963
No 35
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.69 E-value=8.3e-16 Score=170.76 Aligned_cols=205 Identities=22% Similarity=0.297 Sum_probs=144.7
Q ss_pred ccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHH
Q psy12466 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNW 447 (680)
Q Consensus 369 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW 447 (680)
.....|||||.+++..+...+ .. .+.|++...+|.|||+.++.++..+... +|||||. .++.||
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~----~~-~~~gvivlpTGaGKT~va~~~~~~~~~~----------~Lvlv~~~~L~~Qw 96 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNR----RT-ERRGVIVLPTGAGKTVVAAEAIAELKRS----------TLVLVPTKELLDQW 96 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhc----cc-CCceEEEeCCCCCHHHHHHHHHHHhcCC----------EEEEECcHHHHHHH
Confidence 345679999999999887632 22 6889999999999999999999876543 8999997 677999
Q ss_pred HHHHHHHhCCC-CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHH--HHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 448 NDEFKKWLGLT-RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA--YQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 448 ~~E~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~--~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
.+.+.++++.. .+..+.+...... . ..|.|+||+++.+. ...+....|++||+||||++..+... +.+
T Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~ 167 (442)
T COG1061 97 AEALKKFLLLNDEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RIL 167 (442)
T ss_pred HHHHHHhcCCccccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHH
Confidence 99898887654 3444444332211 1 46999999999885 45555568999999999998543333 334
Q ss_pred Hhcccce-EEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccc
Q psy12466 525 TGLNIRK-RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGF 603 (680)
Q Consensus 525 ~~l~~~~-rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f 603 (680)
..+...+ +++|||||...+......++.++.|-.+
T Consensus 168 ~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy-------------------------------------------- 203 (442)
T COG1061 168 ELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVY-------------------------------------------- 203 (442)
T ss_pred HhhhcccceeeeccCceeecCCchhHHHHhcCCeEe--------------------------------------------
Confidence 4455666 9999999986654455444444442221
Q ss_pred eeeec-hhHHh-hcCCCcEEEEEEecCCHHHHHHHHHHHHHH
Q psy12466 604 ILRRT-SDVQA-SLLNSKRETLLVCRATPLQQSLYLRCVEYW 643 (680)
Q Consensus 604 ~lRrt-k~~v~-~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~ 643 (680)
... ++.+. ..|.+.....+.+.++......|.......
T Consensus 204 --~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 204 --EVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred --ecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhh
Confidence 122 22222 457778888889999999988888765544
No 36
>PRK13766 Hef nuclease; Provisional
Probab=99.59 E-value=5.3e-14 Score=167.76 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=117.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
++|+||.+.+..+++ +++++++++|+|||++++.++....... .+++|||||+ .++.||.+++
T Consensus 15 ~~r~yQ~~~~~~~l~----------~n~lv~~ptG~GKT~~a~~~i~~~l~~~------~~~vLvl~Pt~~L~~Q~~~~~ 78 (773)
T PRK13766 15 EARLYQQLLAATALK----------KNTLVVLPTGLGKTAIALLVIAERLHKK------GGKVLILAPTKPLVEQHAEFF 78 (773)
T ss_pred CccHHHHHHHHHHhc----------CCeEEEcCCCccHHHHHHHHHHHHHHhC------CCeEEEEeCcHHHHHHHHHHH
Confidence 579999998877653 3799999999999999988877665321 2479999998 7889999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccCcccHHHHHHH--
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKNGKSKLYELMT-- 525 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~-- 525 (680)
.++++. ..+..+.+....... ......++|+|+|++.+..+.. .+.-..|++||+||||++.+..+..+.+-.
T Consensus 79 ~~~~~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 79 RKFLNIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HHHhCCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 998754 356666665443322 2222357899999999977542 233346999999999999765443332211
Q ss_pred -hcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 526 -GLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 526 -~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
..+..++++|||||..+ ...+..+++-|.
T Consensus 158 ~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~ 187 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSD-EEKIKEVCENLG 187 (773)
T ss_pred hcCCCCEEEEEEcCCCCC-HHHHHHHHHhCC
Confidence 12455689999999775 556666666554
No 37
>KOG0388|consensus
Probab=99.57 E-value=9.1e-16 Score=167.56 Aligned_cols=129 Identities=22% Similarity=0.285 Sum_probs=111.2
Q ss_pred cCCCCCCCCCCchhHHh-------------------------------------hcCCCCCeEEEEECcccHHHHHHHHH
Q psy12466 170 EVNPLILPKPIVDHQEK-------------------------------------NRRSYILRVLIVTPSSLTSNWNDEFK 212 (680)
Q Consensus 170 ~~~p~~l~~~L~~hQ~~-------------------------------------~~~~~~~~~LIV~P~sl~~nW~~E~~ 212 (680)
.-+|..+...|+.+|.. .....-.++|||+|+|++.||.+||.
T Consensus 558 V~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEis 637 (1185)
T KOG0388|consen 558 VPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEIS 637 (1185)
T ss_pred ccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHHH
Confidence 34577888889999987 11112347899999999999999999
Q ss_pred HHhCCCCeeEEeecCCcchhh---------hcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCCCCCCCCCcc
Q psy12466 213 KWLGLTRMCPYHVNQKNKAED---------YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGN 283 (680)
Q Consensus 213 k~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lKN~~s~~~~a 283 (680)
+|+|.+++.+|.|+...+... +.....++|+||||.++..+..-|.+++|.++|+|||+-||...+.+++.
T Consensus 638 rFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~RWKt 717 (1185)
T KOG0388|consen 638 RFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSRWKT 717 (1185)
T ss_pred HhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhHHHH
Confidence 999999999999987654432 22445678999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceeccCC
Q psy12466 284 DSGIPSLPRKSDSGI 298 (680)
Q Consensus 284 ~~~l~~~~r~~LTG~ 298 (680)
+..++|+.|++|||+
T Consensus 718 LLsF~cRNRLLLTGT 732 (1185)
T KOG0388|consen 718 LLSFKCRNRLLLTGT 732 (1185)
T ss_pred HhhhhccceeeecCC
Confidence 999999999999994
No 38
>KOG0386|consensus
Probab=99.56 E-value=8.3e-16 Score=174.25 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=94.6
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh--hcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEc
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED--YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICD 268 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~D 268 (680)
...+.|||+|.|++.||..||.+|.|......|.|....+... ......++|++|+||.+.++...|.++.|.++|+|
T Consensus 443 ~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIID 522 (1157)
T KOG0386|consen 443 MQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIID 522 (1157)
T ss_pred cCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeec
Confidence 4457899999999999999999999987777887776544332 33447789999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccc-CCCCCCceeccCCC
Q psy12466 269 EKSLLKPPSGNSPGNDS-GIPSLPRKSDSGIG 299 (680)
Q Consensus 269 EaH~lKN~~s~~~~a~~-~l~~~~r~~LTG~~ 299 (680)
|||||||..++.+..+. ...+++|++|||+.
T Consensus 523 EGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTP 554 (1157)
T KOG0386|consen 523 EGHRMKNAICKLTDTLNTHYRAQRRLLLTGTP 554 (1157)
T ss_pred ccccccchhhHHHHHhhccccchhhhhhcCCh
Confidence 99999999999999888 78899999999953
No 39
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.56 E-value=4.3e-14 Score=159.90 Aligned_cols=145 Identities=22% Similarity=0.260 Sum_probs=105.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|||||.+++..++. +..+++...+|.|||++++.++..+...+. .++|||||+ .|+.||.++
T Consensus 113 ~~~r~~Q~~av~~~l~---------~~~~il~apTGsGKT~i~~~l~~~~~~~~~------~~vLilvpt~eL~~Q~~~~ 177 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK---------NNRRLLNLPTSAGKSLIQYLLSRYYLENYE------GKVLIIVPTTSLVTQMIDD 177 (501)
T ss_pred CCCCHHHHHHHHHHHh---------cCceEEEeCCCCCHHHHHHHHHHHHHhcCC------CeEEEEECcHHHHHHHHHH
Confidence 4699999999977654 256899999999999998777655544431 269999997 888999999
Q ss_pred HHHHhCC--CCe-eEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc
Q psy12466 451 FKKWLGL--TRM-CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL 527 (680)
Q Consensus 451 ~~~~~~~--~~v-~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l 527 (680)
+.+|... ..+ .++.+.... ...+|+|+|++.+.+....+. ..+++||+||||++... .....+..+
T Consensus 178 l~~~~~~~~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~~--~~~~il~~~ 246 (501)
T PHA02558 178 FVDYRLFPREAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTGK--SLTSIITKL 246 (501)
T ss_pred HHHhccccccceeEEecCcccC--------CCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccch--hHHHHHHhh
Confidence 9998632 222 222322211 246899999999876443222 36899999999998643 344555666
Q ss_pred -ccceEEEEeCCCCCC
Q psy12466 528 -NIRKRILLSGTPLQN 542 (680)
Q Consensus 528 -~~~~rllLTgTP~~n 542 (680)
+++++++|||||...
T Consensus 247 ~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 247 DNCKFKFGLTGSLRDG 262 (501)
T ss_pred hccceEEEEeccCCCc
Confidence 578899999999654
No 40
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.55 E-value=7.5e-14 Score=128.41 Aligned_cols=136 Identities=26% Similarity=0.313 Sum_probs=100.0
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHHhC-CCCeeEeecCCcchhhhhhh
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~ 476 (680)
++++.+++|+|||.+++.++..+..... .++++|+||...+ .+|.+.+..+.. ...+.++.............
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~-----~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLK-----GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhccc-----CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHh
Confidence 6799999999999999999988876532 3469999998554 666777777775 34555555554444333333
Q ss_pred cCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCcccHHH---HHHHhcccceEEEEeCCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNGKSKLY---ELMTGLNIRKRILLSGTP 539 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~~s~~~---~~l~~l~~~~rllLTgTP 539 (680)
....++++++|+.+.+..... ....++++|+||+|.+.+...... ..........++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 457889999999988765543 345799999999999987765543 334445778899999998
No 41
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.54 E-value=4.4e-15 Score=156.39 Aligned_cols=108 Identities=24% Similarity=0.287 Sum_probs=83.5
Q ss_pred CCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCc--chhhhcccCCCCEEEEehhHHH-----HHHHhhhcCCCcE
Q psy12466 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN--KAEDYVYSRVSPVLIISYEMLI-----RAYQTIVDTEFDL 264 (680)
Q Consensus 192 ~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~--~~~~~~~~~~~~V~itsYe~l~-----~~~~~l~~~~~~~ 264 (680)
.+++|||||.+++.+|..||.+|++.....++...+.. ..........++|+|+||+++. .....+...+|++
T Consensus 58 ~~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~ 137 (299)
T PF00176_consen 58 EKKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDR 137 (299)
T ss_dssp -S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEE
T ss_pred ccceeEeeccchhhhhhhhhccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccee
Confidence 34699999999999999999999943333444443333 2223334466889999999999 6667788888999
Q ss_pred EEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 265 LICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 265 vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
||+||+|++||..++.++++..+.+.+||+|||+.
T Consensus 138 vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP 172 (299)
T PF00176_consen 138 VIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTP 172 (299)
T ss_dssp EEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-
T ss_pred EEEecccccccccccccccccccccceEEeecccc
Confidence 99999999999999999999999999999999864
No 42
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.54 E-value=8.1e-14 Score=136.17 Aligned_cols=158 Identities=28% Similarity=0.409 Sum_probs=112.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++++|.+++..+... ..++++..++|+|||..++.++.......+ .+++||++|. .+..||..+
T Consensus 7 ~~~~~~Q~~~~~~~~~~--------~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----~~~~l~~~p~~~~~~~~~~~ 73 (201)
T smart00487 7 EPLRPYQKEAIEALLSG--------LRDVILAAPTGSGKTLAALLPALEALKRGK-----GKRVLVLVPTRELAEQWAEE 73 (201)
T ss_pred CCCCHHHHHHHHHHHcC--------CCcEEEECCCCCchhHHHHHHHHHHhcccC-----CCcEEEEeCCHHHHHHHHHH
Confidence 45899999999888641 178999999999999988777766665542 2469999995 778999999
Q ss_pred HHHHhCCCC---eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccC-cccHHH-HH
Q psy12466 451 FKKWLGLTR---MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKN-GKSKLY-EL 523 (680)
Q Consensus 451 ~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn-~~s~~~-~~ 523 (680)
+..+++... ...+.+...............++++++|+.+...... ....+++++|+||+|.+.+ ...... ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 74 LKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 999887633 3333333322222222223349999999999887766 4455788999999999985 333333 33
Q ss_pred HHhc-ccceEEEEeCCCCCC
Q psy12466 524 MTGL-NIRKRILLSGTPLQN 542 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~~n 542 (680)
+..+ ...+++++||||..+
T Consensus 154 ~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHhCCccceEEEEecCCchh
Confidence 3444 578889999999744
No 43
>KOG0384|consensus
Probab=99.53 E-value=5.1e-15 Score=170.93 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=94.4
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchh--h--hc-cc----CCCCEEEEehhHHHHHHHhhhcCC
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE--D--YV-YS----RVSPVLIISYEMLIRAYQTIVDTE 261 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~--~--~~-~~----~~~~V~itsYe~l~~~~~~l~~~~ 261 (680)
...++|||+|.|++.+|++||.+|+ ..++.+|+|+-..+.. . +. .. -.++++|||||++..+...|.+++
T Consensus 419 ~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~ 497 (1373)
T KOG0384|consen 419 IHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIP 497 (1373)
T ss_pred ccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCC
Confidence 3457899999999999999999999 6999999998754432 1 11 11 247899999999999999999999
Q ss_pred CcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 262 FDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|.++++||||||||..++.+.++..+...+|+++||+.
T Consensus 498 w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTP 535 (1373)
T KOG0384|consen 498 WRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTP 535 (1373)
T ss_pred cceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCC
Confidence 99999999999999999999999999999999999954
No 44
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.50 E-value=2e-13 Score=165.21 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=109.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..||+||.+|+..+.+.+. .+.++++|.+.+|+|||+++++++..+...+. .+++|+|||. .|+.||.++
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~----~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~-----~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIV----EGQREILLAMATGTGKTRTAIALMYRLLKAKR-----FRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHH----hccCCeEEEeCCCCCHHHHHHHHHHHHHhcCc-----cCeEEEEecHHHHHHHHHHH
Confidence 4699999999998877642 24578999999999999999999888776543 3579999996 788999999
Q ss_pred HHHHhCCCCee---EeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh-------hhccCceEEEEcCcccccCcc---
Q psy12466 451 FKKWLGLTRMC---PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-------IVDTEFDLLICDEGHRLKNGK--- 517 (680)
Q Consensus 451 ~~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-------l~~~~~~~vIlDEaH~~kn~~--- 517 (680)
|..+....... ++.. .............|+|+|++++.+.... +.-..|++||+||||+....+
T Consensus 483 F~~~~~~~~~~~~~i~~i---~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDI---KGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred HHhcccccccchhhhhch---hhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 99874321110 1111 1111111234578999999998765421 223468999999999853110
Q ss_pred -------------cHHHHHHHhcccceEEEEeCCCCCCC
Q psy12466 518 -------------SKLYELMTGLNIRKRILLSGTPLQND 543 (680)
Q Consensus 518 -------------s~~~~~l~~l~~~~rllLTgTP~~n~ 543 (680)
...++.+.......+++|||||..+.
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t 598 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT 598 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccch
Confidence 12334443333458899999998654
No 45
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.44 E-value=8.6e-13 Score=153.69 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=111.1
Q ss_pred cccCcccHHHHHHHHHhhhhhcc-CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLAS-LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~-~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-.|+||..||+.+.+++..... .+.++|++.+.+|+|||++++.++..+..... ..++|||||. .|..||.+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~-----~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLK-----NPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcC-----CCeEEEEECcHHHHHHHHH
Confidence 44789999999999988643211 13568999999999999999999888775432 3579999997 78899999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh-hhcc----CceEEEEcCcccccCcccHHHHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-IVDT----EFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-l~~~----~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
+|..+.+... ...................|+|+|.+++.+.... +... ...+||+||||+... ....+.+
T Consensus 312 ~f~~~~~~~~---~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l 386 (667)
T TIGR00348 312 EFQSLQKDCA---ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNL 386 (667)
T ss_pred HHHhhCCCCC---cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHH
Confidence 9999865311 1111111122222334578999999999864322 1111 123899999998642 2334455
Q ss_pred H-hcccceEEEEeCCCCCC
Q psy12466 525 T-GLNIRKRILLSGTPLQN 542 (680)
Q Consensus 525 ~-~l~~~~rllLTgTP~~n 542 (680)
. .+....++++||||...
T Consensus 387 ~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 387 KKALKNASFFGFTGTPIFK 405 (667)
T ss_pred HhhCCCCcEEEEeCCCccc
Confidence 3 45778999999999863
No 46
>KOG1123|consensus
Probab=99.44 E-value=1.2e-13 Score=146.69 Aligned_cols=187 Identities=20% Similarity=0.388 Sum_probs=131.7
Q ss_pred cHHHHHHHhhCCCCCCCCCcchhhhccccCCCCCCCccccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEc
Q psy12466 325 SVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILAD 404 (680)
Q Consensus 325 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaD 404 (680)
...+.+.+-|-+ ++ -.+.+++.++++.-. | +..++-.-..++||||...++.|.- ....+.||+.-
T Consensus 262 e~vE~vkkRCie---id--yPlLeEYDFRND~~n-p--dl~idLKPst~iRpYQEksL~KMFG------NgRARSGiIVL 327 (776)
T KOG1123|consen 262 ESVETVKKRCIE---ID--YPLLEEYDFRNDNVN-P--DLDIDLKPSTQIRPYQEKSLSKMFG------NGRARSGIIVL 327 (776)
T ss_pred HHHHHHHHhhhc---cC--chhhhhhccccCCCC-C--CCCcCcCcccccCchHHHHHHHHhC------CCcccCceEEE
Confidence 445566666643 11 123455666654322 2 2223333357899999999999953 34567899999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-HHHHHHHHHHHhC--CCCeeEeecCCcchhhhhhhcCCCC
Q psy12466 405 EMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-TSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSP 481 (680)
Q Consensus 405 emGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~ 481 (680)
.+|.|||+..+..++.+.. ++||+|-+++ +.||..+|..|.. +..++.+....+.+.. ....
T Consensus 328 PCGAGKtLVGvTAa~tikK----------~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~-----~~~g 392 (776)
T KOG1123|consen 328 PCGAGKTLVGVTAACTIKK----------SCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERFP-----SGAG 392 (776)
T ss_pred ecCCCCceeeeeeeeeecc----------cEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccCC-----CCCc
Confidence 9999999999888766544 4899999865 5999999999974 3345555544443322 3578
Q ss_pred EEEEeHHHHH----------HHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCC
Q psy12466 482 VLIISYEMLI----------RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 482 vvI~ty~~l~----------~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n 542 (680)
|+|+||+++. +.++.+....|+++|+||+|.+ +..-.-+.+.-+.+..+++||||-+..
T Consensus 393 vvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvRE 461 (776)
T KOG1123|consen 393 VVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVRE 461 (776)
T ss_pred EEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeec
Confidence 9999999985 4567788899999999999987 333333344445888899999999875
No 47
>KOG1000|consensus
Probab=99.41 E-value=1.8e-13 Score=145.21 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=101.5
Q ss_pred cCCCCCCCCCCchhHHhhcCC------------------------------CCCeEEEEECcccHHHHHHHHHHHhCCCC
Q psy12466 170 EVNPLILPKPIVDHQEKNRRS------------------------------YILRVLIVTPSSLTSNWNDEFKKWLGLTR 219 (680)
Q Consensus 170 ~~~p~~l~~~L~~hQ~~~~~~------------------------------~~~~~LIV~P~sl~~nW~~E~~k~~~~~~ 219 (680)
..+| .+...|+|+|+++... .--+.|||||+||...|.+++++|+|...
T Consensus 190 v~d~-kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAsvrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 190 VMDP-KLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPASVRFTWAKALNRFLPSIH 268 (689)
T ss_pred ccCH-HHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHHHhHHHHHHHHHhccccc
Confidence 3456 6778899999991110 01156999999999999999999998533
Q ss_pred e-eEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCCCCCCCCCccccCCC--CCCceecc
Q psy12466 220 M-CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIP--SLPRKSDS 296 (680)
Q Consensus 220 ~-~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~--~~~r~~LT 296 (680)
- +++.... ...... .....|.|+||+++....+.|....|.+||+||.|.|||.+++.++++..+. +.+-++|+
T Consensus 269 pi~vv~~~~-D~~~~~--~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLS 345 (689)
T KOG1000|consen 269 PIFVVDKSS-DPLPDV--CTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLS 345 (689)
T ss_pred ceEEEeccc-CCcccc--ccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEec
Confidence 3 2222222 111111 1334699999999999999999999999999999999999999999988865 44578888
Q ss_pred CCCCCCCCCCchhhhH
Q psy12466 297 GIGSLPCKRPLEESTA 312 (680)
Q Consensus 297 G~~~~~~~~~~~e~~~ 312 (680)
|+. .-+||.|-++.
T Consensus 346 GTP--avSRP~elytq 359 (689)
T KOG1000|consen 346 GTP--AVSRPSELYTQ 359 (689)
T ss_pred CCc--ccCCchhhhhh
Confidence 765 45788876654
No 48
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.40 E-value=3.3e-13 Score=159.98 Aligned_cols=110 Identities=19% Similarity=0.200 Sum_probs=79.4
Q ss_pred CCCCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh--hcccCCCCEEEEehhHHHHHH---HhhhcCCCc
Q psy12466 189 RSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED--YVYSRVSPVLIISYEMLIRAY---QTIVDTEFD 263 (680)
Q Consensus 189 ~~~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~V~itsYe~l~~~~---~~l~~~~~~ 263 (680)
.+.++++|||||+||+.||+.|+.+|++ ..+.++.......... ......++++|+||+++++.. ..+....||
T Consensus 196 ~g~~~rvLIVvP~sL~~QW~~El~~kF~-l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wd 274 (956)
T PRK04914 196 TGRAERVLILVPETLQHQWLVEMLRRFN-LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWD 274 (956)
T ss_pred cCCCCcEEEEcCHHHHHHHHHHHHHHhC-CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCC
Confidence 3457899999999999999999999986 4555554332111100 011134689999999998733 557778999
Q ss_pred EEEEcCCCCCCCCC---CCCCccccCC--CCCCceeccCCC
Q psy12466 264 LLICDEKSLLKPPS---GNSPGNDSGI--PSLPRKSDSGIG 299 (680)
Q Consensus 264 ~vI~DEaH~lKN~~---s~~~~a~~~l--~~~~r~~LTG~~ 299 (680)
+||+||||+|||.. ++.++.+..+ ++.++++|||+.
T Consensus 275 lvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP 315 (956)
T PRK04914 275 LLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATP 315 (956)
T ss_pred EEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCc
Confidence 99999999999754 4446777777 456799999854
No 49
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.39 E-value=1e-12 Score=148.37 Aligned_cols=175 Identities=19% Similarity=0.192 Sum_probs=129.5
Q ss_pred ccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-ch
Q psy12466 365 TVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SL 443 (680)
Q Consensus 365 ~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sl 443 (680)
..|......+|+||..|++...+.+. .+....+|++.+|+|||.+|++++..+...+. .+++|.++.. +|
T Consensus 157 ~~~~~s~i~~RyyQ~~AI~rv~Eaf~----~g~~raLlvMATGTGKTrTAiaii~rL~r~~~-----~KRVLFLaDR~~L 227 (875)
T COG4096 157 YIDIDSAIGPRYYQIIAIRRVIEAFS----KGQNRALLVMATGTGKTRTAIAIIDRLIKSGW-----VKRVLFLADRNAL 227 (875)
T ss_pred cCcccccccchHHHHHHHHHHHHHHh----cCCceEEEEEecCCCcceeHHHHHHHHHhcch-----hheeeEEechHHH
Confidence 34444567799999999999998753 34566999999999999999999999998764 7899999995 88
Q ss_pred HHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh-------hccCceEEEEcCcccccCc
Q psy12466 444 TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI-------VDTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 444 l~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l-------~~~~~~~vIlDEaH~~kn~ 516 (680)
+.|=..+|.+|.|....+...... .....+.|+++||+++......- .-..||+||+||||+-
T Consensus 228 v~QA~~af~~~~P~~~~~n~i~~~-------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg--- 297 (875)
T COG4096 228 VDQAYGAFEDFLPFGTKMNKIEDK-------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG--- 297 (875)
T ss_pred HHHHHHHHHHhCCCccceeeeecc-------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---
Confidence 899999999999986655433221 12225789999999998766543 2235999999999973
Q ss_pred ccHHHHHHHhcccceEEEEeCCCCC-----------CCHHHHHHHHhhhCCCC
Q psy12466 517 KSKLYELMTGLNIRKRILLSGTPLQ-----------NDLQEFFYLNDFANPGV 558 (680)
Q Consensus 517 ~s~~~~~l~~l~~~~rllLTgTP~~-----------n~~~el~sll~fl~p~~ 558 (680)
..+.++.+...-...+++|||||-. ..+...|++=.-+..++
T Consensus 298 i~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGf 350 (875)
T COG4096 298 IYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGF 350 (875)
T ss_pred HHhhhHHHHHHHHHHHHhhccCcccccccccccccCCCcceeecHHHHhhccc
Confidence 3334445555556677788999966 44555566554444333
No 50
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.37 E-value=4.3e-11 Score=128.74 Aligned_cols=162 Identities=18% Similarity=0.196 Sum_probs=116.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+-|.||..-+.-.+. ++++++-.+|||||+.|+.++.......+ +++|+++|+ .|+.|-.+-+
T Consensus 15 e~R~YQ~~i~a~al~----------~NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 15 EPRLYQLNIAAKALF----------KNTLVVLPTGLGKTFIAAMVIANRLRWFG------GKVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred cHHHHHHHHHHHHhh----------cCeEEEecCCccHHHHHHHHHHHHHHhcC------CeEEEecCCchHHHHHHHHH
Confidence 467899877766544 58999999999999999999987776654 359999997 8889999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcccHHHHH--HH
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKSKLYEL--MT 525 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s~~~~~--l~ 525 (680)
.++++. ..+..+.|..+...+...+ ....|+++|.+.+.+++.. +.-..+.++|+||||+.-+..+=.+-+ ..
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~ 157 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYL 157 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHH
Confidence 999854 6677777776655444333 3678999999999887643 334578999999999975543322211 11
Q ss_pred hc-ccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 526 GL-NIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 526 ~l-~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
+. +..+.++|||||= ++...+...++
T Consensus 158 ~~~k~~~ilgLTASPG-s~~ekI~eV~~ 184 (542)
T COG1111 158 RSAKNPLILGLTASPG-SDLEKIQEVVE 184 (542)
T ss_pred HhccCceEEEEecCCC-CCHHHHHHHHH
Confidence 22 4447899999993 33444444333
No 51
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.27 E-value=8.4e-11 Score=117.01 Aligned_cols=156 Identities=17% Similarity=0.115 Sum_probs=105.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.++++|.+++..+.+ +++.++..++|.|||... +.++..+...... ...++|||||. .++.|+.+.
T Consensus 21 ~~~~~Q~~~~~~~~~---------~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~---~~~~viii~p~~~L~~q~~~~ 88 (203)
T cd00268 21 KPTPIQARAIPPLLS---------GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKK---DGPQALILAPTRELALQIAEV 88 (203)
T ss_pred CCCHHHHHHHHHHhc---------CCcEEEECCCCCcHHHHHHHHHHHHHHhhccc---CCceEEEEcCCHHHHHHHHHH
Confidence 478999999987753 478999999999999985 4445554443111 12469999997 788999999
Q ss_pred HHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCcc-cHHHH-HH
Q psy12466 451 FKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNGK-SKLYE-LM 524 (680)
Q Consensus 451 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~~-s~~~~-~l 524 (680)
+..+.. ...+..+.+...............+|+|+|.+.+......- .-..++++|+||+|.+.+.. ..... .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~ 168 (203)
T cd00268 89 ARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREIL 168 (203)
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHH
Confidence 999875 34445555554443333333357889999998876644321 11357899999999976442 22222 23
Q ss_pred Hhcc-cceEEEEeCCCC
Q psy12466 525 TGLN-IRKRILLSGTPL 540 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~ 540 (680)
..+. ....+++||||-
T Consensus 169 ~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 169 KLLPKDRQTLLFSATMP 185 (203)
T ss_pred HhCCcccEEEEEeccCC
Confidence 3343 466799999997
No 52
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.26 E-value=7.9e-11 Score=113.24 Aligned_cols=156 Identities=24% Similarity=0.373 Sum_probs=108.1
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
|+|.+++.-+.+ ++..++...+|.|||..++..+......+. ...+||+||. .++.|-.+++.++
T Consensus 2 ~~Q~~~~~~i~~---------~~~~li~aptGsGKT~~~~~~~l~~~~~~~-----~~~~lii~P~~~l~~q~~~~~~~~ 67 (169)
T PF00270_consen 2 PLQQEAIEAIIS---------GKNVLISAPTGSGKTLAYILPALNRLQEGK-----DARVLIIVPTRALAEQQFERLRKF 67 (169)
T ss_dssp HHHHHHHHHHHT---------TSEEEEECSTTSSHHHHHHHHHHHHHHTTS-----SSEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---------CCCEEEECCCCCccHHHHHHHHHhhhccCC-----CceEEEEeeccccccccccccccc
Confidence 689999987752 366999999999999998765554444332 1269999997 7889999999999
Q ss_pred hCC--CCeeEeecCCcchhhh-hhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHHHhc
Q psy12466 455 LGL--TRMCPYHVNQKNKAED-YVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELMTGL 527 (680)
Q Consensus 455 ~~~--~~v~~~~~~~~~~~~~-~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~~l 527 (680)
+.. .++..+++........ .......+|+|+|++.+...... ..-...++||+||+|.+... .......+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 68 FSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp TTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred ccccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh
Confidence 875 4555555544433122 12235689999999999887764 11234899999999998653 22233333333
Q ss_pred ---ccceEEEEeCCCCCCCHHH
Q psy12466 528 ---NIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 528 ---~~~~rllLTgTP~~n~~~e 546 (680)
.....+++||||- .++.+
T Consensus 148 ~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 148 KRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp HTTTTSEEEEEESSST-HHHHH
T ss_pred cCCCCCcEEEEeeCCC-hhHhh
Confidence 3466899999997 55543
No 53
>KOG1001|consensus
Probab=99.25 E-value=5.2e-12 Score=144.74 Aligned_cols=105 Identities=19% Similarity=0.260 Sum_probs=84.8
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
..+..|||||+|++.+|..|+.+-.....+.+++..+ +..+......++||||||.++.. ..+..+.|-+||+|||
T Consensus 188 ~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea 263 (674)
T KOG1001|consen 188 EFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEA 263 (674)
T ss_pred ccCceeEecchHHHHHHHHHHhccCCccceEEEEecc--cccccchhcCCceEEeeHHHhhc--ccccceeEEEEEeccc
Confidence 5778999999999999999997776544554444444 22222333667899999999975 4455688999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 271 SLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|.|||++++.++++..+.+.+||+|||+.
T Consensus 264 ~~ikn~~tq~~~a~~~L~a~~RWcLtgtP 292 (674)
T KOG1001|consen 264 HTIKNKDTQIFKAVCQLDAKYRWCLTGTP 292 (674)
T ss_pred cccCCcchHhhhhheeeccceeeeecCCh
Confidence 99999999999999999999999999843
No 54
>KOG0354|consensus
Probab=99.22 E-value=1e-10 Score=132.45 Aligned_cols=169 Identities=18% Similarity=0.184 Sum_probs=122.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
-.||+||.+-+.-.+ +.++|+|-.+|+|||+.|+.++..+.+..+. +++++.+|+ .|+.|-...
T Consensus 61 ~~lR~YQ~eivq~AL----------gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-----~KiVF~aP~~pLv~QQ~a~ 125 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL----------GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-----GKVVFLAPTRPLVNQQIAC 125 (746)
T ss_pred ccccHHHHHHhHHhh----------cCCeEEEeecCCCccchHHHHHHHHHhcCCc-----ceEEEeeCCchHHHHHHHH
Confidence 369999999886653 5889999999999999999999988888763 579999997 677777788
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccC---ceEEEEcCcccccCcccHHHHHH---
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTE---FDLLICDEGHRLKNGKSKLYELM--- 524 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~---~~~vIlDEaH~~kn~~s~~~~~l--- 524 (680)
+..++-.-.+....++...+..........+|+|+|.+.+..++....... |.++|+||||+... ++.....+
T Consensus 126 ~~~~~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 126 FSIYLIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSK-NHPYNNIMREY 204 (746)
T ss_pred HhhccCcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccc-cccHHHHHHHH
Confidence 888764444555555433333333344567899999999998876655444 99999999999632 22233333
Q ss_pred Hhc--ccceEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy12466 525 TGL--NIRKRILLSGTPLQNDLQEFFYLNDFANPG 557 (680)
Q Consensus 525 ~~l--~~~~rllLTgTP~~n~~~el~sll~fl~p~ 557 (680)
..+ ...+.|+|||||= ++.....+.+.=|.-.
T Consensus 205 l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as 238 (746)
T KOG0354|consen 205 LDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS 238 (746)
T ss_pred HHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee
Confidence 333 3347899999998 7777776666655444
No 55
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.20 E-value=5.1e-12 Score=152.64 Aligned_cols=108 Identities=29% Similarity=0.365 Sum_probs=93.6
Q ss_pred CCeEEEEECcccHHHHHHHHHHHhCCCC-eeEEeecCCc---chhhhccc------CCCCEEEEehhHHHH---HHHhhh
Q psy12466 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKN---KAEDYVYS------RVSPVLIISYEMLIR---AYQTIV 258 (680)
Q Consensus 192 ~~~~LIV~P~sl~~nW~~E~~k~~~~~~-~~~~~~~~~~---~~~~~~~~------~~~~V~itsYe~l~~---~~~~l~ 258 (680)
.+++|||||+|++.||.+||.+|.|..+ +..++|.... +....... ..++|++|||+.++. ....+.
T Consensus 390 ~~~~liv~p~s~~~nw~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~ 469 (866)
T COG0553 390 LGPALIVVPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLK 469 (866)
T ss_pred CCCeEEEecHHHHHHHHHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHh
Confidence 4689999999999999999999999888 8888887642 12221111 127899999999999 888999
Q ss_pred cCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 259 DTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
...|+.+|+||||+|||..++.+++++.+++.+|++|||+.
T Consensus 470 ~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTP 510 (866)
T COG0553 470 KIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTP 510 (866)
T ss_pred hceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCCh
Confidence 99999999999999999999999999999999999999976
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.20 E-value=1.3e-10 Score=135.10 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=109.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
-+|.++|++++..+.... ......+.+|..++|+|||+.++..+......+. .++|++|+ .|..|+.++
T Consensus 234 f~lt~~Q~~ai~~I~~~~---~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~-------qvlilaPT~~LA~Q~~~~ 303 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDL---KSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGY-------QVALMAPTEILAEQHYNS 303 (630)
T ss_pred CCCCHHHHHHHHHHHHHh---ccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCC-------cEEEECCHHHHHHHHHHH
Confidence 368999999999887642 2223446799999999999987655544444432 48999997 666999999
Q ss_pred HHHHhCC--CCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 451 FKKWLGL--TRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 451 ~~~~~~~--~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
+.++++. .++.++++....... .....+..+|+|+|+..+.... .-.+.++||+||+|++.- .+.....
T Consensus 304 ~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~--~qr~~l~ 378 (630)
T TIGR00643 304 LRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGV--EQRKKLR 378 (630)
T ss_pred HHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---cccccceEEEechhhccH--HHHHHHH
Confidence 9999874 566777766543322 1223456799999998876432 224578999999999732 2222222
Q ss_pred Hhcc---cceEEEEeCCCCCCCH
Q psy12466 525 TGLN---IRKRILLSGTPLQNDL 544 (680)
Q Consensus 525 ~~l~---~~~rllLTgTP~~n~~ 544 (680)
.... ..+.++|||||+...+
T Consensus 379 ~~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 379 EKGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred HhcccCCCCCEEEEeCCCCcHHH
Confidence 2233 5678999999987544
No 57
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.16 E-value=2.1e-09 Score=110.87 Aligned_cols=245 Identities=20% Similarity=0.225 Sum_probs=148.0
Q ss_pred cccCccc--ccccCcccHHHHHHHHHhhhh-hccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 364 VTVDGFL--SRVLKPHQRQGVSFLYERVCD-LASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 364 ~~~p~~l--~~~LrpyQ~~gv~~l~~~~~~-~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
..+|..+ ...|=.-|.++|-+..++... +......|.+|+|.+|.||-.|+.++|......+.. +.+-|-+.
T Consensus 26 ~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-----r~vwvS~s 100 (303)
T PF13872_consen 26 LHLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-----RAVWVSVS 100 (303)
T ss_pred cCCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-----ceEEEECC
Confidence 3455532 356788999999999887432 223356789999999999999999999887777641 23444455
Q ss_pred cchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH-------hhhc------cCc-eEEE
Q psy12466 441 SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-------TIVD------TEF-DLLI 506 (680)
Q Consensus 441 ~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~-------~l~~------~~~-~~vI 506 (680)
..|...-.+++...-.. .+.+.....-..... ..-...|+++||..+..... .+.+ ..| .+||
T Consensus 101 ~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgviv 177 (303)
T PF13872_consen 101 NDLKYDAERDLRDIGAD-NIPVHPLNKFKYGDI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIV 177 (303)
T ss_pred hhhhhHHHHHHHHhCCC-cccceechhhccCcC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEE
Confidence 67777777777764322 222222221111111 11246799999999976532 1111 123 4899
Q ss_pred EcCcccccCccc------HHHHHHHhc----ccceEEEEeCCCCCCCHHHHHHHHhh--hCCC-CCCCHHHHHHHhhhhh
Q psy12466 507 CDEGHRLKNGKS------KLYELMTGL----NIRKRILLSGTPLQNDLQEFFYLNDF--ANPG-VLGSLREFRKNFEEPI 573 (680)
Q Consensus 507 lDEaH~~kn~~s------~~~~~l~~l----~~~~rllLTgTP~~n~~~el~sll~f--l~p~-~l~~~~~F~~~f~~~i 573 (680)
+||||+.+|..+ +...++..| ...+.+..|||... .+.+|-.+-++ -.++ .|.+..+|......
T Consensus 178 fDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas-ep~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~-- 254 (303)
T PF13872_consen 178 FDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS-EPRNMAYMSRLGLWGPGTPFPDFDDFLEAMEK-- 254 (303)
T ss_pred eccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC-CCceeeeeeeccccCCCCCCCCHHHHHHHHHh--
Confidence 999999999755 455565544 45578999999984 34444322221 1221 35566666555443
Q ss_pred hccCCCCChHHHHHhhhhHHHHHHHH--hccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHH
Q psy12466 574 LESRSPNSTEAQKSLGELRSSQLAKR--TAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLR 638 (680)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~L~~~--l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~ 638 (680)
++. ...+.+..- -+...++|.-+ +-.-+..++.++|+++|.++|+.
T Consensus 255 --gGv------------~amE~vA~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 255 --GGV------------GAMEMVAMDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred --cCc------------hHHHHHHHHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 211 111111111 23445555442 44456788999999999999975
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.11 E-value=5.7e-10 Score=130.74 Aligned_cols=157 Identities=19% Similarity=0.243 Sum_probs=109.3
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-+|.++|.+++.-+..- .........+|..++|+|||+.++..+......+ ..+||++|+ .|..|..+
T Consensus 259 ~f~lt~~Q~~ai~~I~~d---~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-------~q~lilaPT~~LA~Q~~~ 328 (681)
T PRK10917 259 PFELTGAQKRVVAEILAD---LASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-------YQAALMAPTEILAEQHYE 328 (681)
T ss_pred CCCCCHHHHHHHHHHHHh---hhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEeccHHHHHHHHH
Confidence 346899999999988763 2223345689999999999999876654444443 259999998 67799999
Q ss_pred HHHHHhCC--CCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHH
Q psy12466 450 EFKKWLGL--TRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYEL 523 (680)
Q Consensus 450 E~~~~~~~--~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~ 523 (680)
.+.++++. .++.++++....... .....+..+|+|+|+..+.... .-.+.++||+||+|++. ......
T Consensus 329 ~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg---~~qr~~ 402 (681)
T PRK10917 329 NLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFG---VEQRLA 402 (681)
T ss_pred HHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc---hhcccceEEEechhhhh---HHHHHH
Confidence 99999875 566667776553222 1223456899999998875422 12357899999999973 222233
Q ss_pred HHhc-ccceEEEEeCCCCCCC
Q psy12466 524 MTGL-NIRKRILLSGTPLQND 543 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~~n~ 543 (680)
+... ...+.++|||||+...
T Consensus 403 l~~~~~~~~iL~~SATp~prt 423 (681)
T PRK10917 403 LREKGENPHVLVMTATPIPRT 423 (681)
T ss_pred HHhcCCCCCEEEEeCCCCHHH
Confidence 3333 3567899999997654
No 59
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.11 E-value=1.4e-09 Score=121.42 Aligned_cols=167 Identities=16% Similarity=0.164 Sum_probs=106.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHH-HHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI-WTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali-~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+.++|.+++..+++ +...++...+|.|||...+..+ ..+.. .+.......++||++|. .|..|+.+.
T Consensus 23 ~p~~iQ~~ai~~~~~---------g~d~l~~apTGsGKT~~~~lp~l~~l~~-~~~~~~~~~~~lil~Pt~eLa~Q~~~~ 92 (434)
T PRK11192 23 RPTAIQAEAIPPALD---------GRDVLGSAPTGTGKTAAFLLPALQHLLD-FPRRKSGPPRILILTPTRELAMQVADQ 92 (434)
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHhh-ccccCCCCceEEEECCcHHHHHHHHHH
Confidence 467899999988753 3678999999999999865443 33332 11111123479999997 677999988
Q ss_pred HHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 451 FKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 451 ~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
+..+... .++..+.+...............+|+|+|.+.+...+.. +.-..+++||+||||++-... ......+
T Consensus 93 ~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~ 172 (434)
T PRK11192 93 ARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIA 172 (434)
T ss_pred HHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHH
Confidence 8887654 345555554433333223345678999999988765432 223457889999999985432 2222222
Q ss_pred Hhcc-cceEEEEeCCCCCCCHHHHHH
Q psy12466 525 TGLN-IRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~~n~~~el~s 549 (680)
..+. ....+++|||+-...+.++..
T Consensus 173 ~~~~~~~q~~~~SAT~~~~~~~~~~~ 198 (434)
T PRK11192 173 AETRWRKQTLLFSATLEGDAVQDFAE 198 (434)
T ss_pred HhCccccEEEEEEeecCHHHHHHHHH
Confidence 2232 234599999986554555443
No 60
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=1.8e-10 Score=132.66 Aligned_cols=100 Identities=15% Similarity=0.346 Sum_probs=73.3
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHH----------HHhhhc
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA----------YQTIVD 259 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~----------~~~l~~ 259 (680)
+++|||||.++ +.||.+||.+|+. ...+..+.++.+.. .....+|+|+||.++... .+.+..
T Consensus 299 k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~ 373 (732)
T TIGR00603 299 KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTN 373 (732)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhcc
Confidence 58999999886 8899999999974 23444554433221 123478999999998532 344556
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 260 TEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 260 ~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
..|++||+||+|++.++ ...+.+..+.+.+|+.|||+.
T Consensus 374 ~~~gLII~DEvH~lpA~--~fr~il~~l~a~~RLGLTATP 411 (732)
T TIGR00603 374 REWGLILLDEVHVVPAA--MFRRVLTIVQAHCKLGLTATL 411 (732)
T ss_pred ccCCEEEEEccccccHH--HHHHHHHhcCcCcEEEEeecC
Confidence 78999999999999643 344466778899999999764
No 61
>COG4889 Predicted helicase [General function prediction only]
Probab=99.06 E-value=4.1e-10 Score=126.47 Aligned_cols=159 Identities=26% Similarity=0.325 Sum_probs=101.3
Q ss_pred cCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH
Q psy12466 366 VDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT 444 (680)
Q Consensus 366 ~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll 444 (680)
+|..-..++||||.+|+....+.+ ..+.+|=|-..+|+|||++++-+...+... ++|.++|+ +|+
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F-----~~n~RGkLIMAcGTGKTfTsLkisEala~~---------~iL~LvPSIsLL 219 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGF-----SDNDRGKLIMACGTGKTFTSLKISEALAAA---------RILFLVPSISLL 219 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhc-----ccccCCcEEEecCCCccchHHHHHHHHhhh---------heEeecchHHHH
Confidence 444445789999999999888753 235667778889999999999999888774 48999998 788
Q ss_pred HHHHHHHHHHhCCCCeeEeecCCcc--------------------hhhh-------hhhcCCCCEEEEeHHHHHHHHHh-
Q psy12466 445 SNWNDEFKKWLGLTRMCPYHVNQKN--------------------KAED-------YVYSRVSPVLIISYEMLIRAYQT- 496 (680)
Q Consensus 445 ~qW~~E~~~~~~~~~v~~~~~~~~~--------------------~~~~-------~~~~~~~~vvI~ty~~l~~~~~~- 496 (680)
.|-.+|...-. .+.+......+.. +... ......--||++||+.+-.....
T Consensus 220 sQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ 298 (1518)
T COG4889 220 SQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ 298 (1518)
T ss_pred HHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH
Confidence 77655543211 1111111111110 0000 11112234999999998764433
Q ss_pred -hhccCceEEEEcCcccccCc------ccHHHHH--HHhcccceEEEEeCCC
Q psy12466 497 -IVDTEFDLLICDEGHRLKNG------KSKLYEL--MTGLNIRKRILLSGTP 539 (680)
Q Consensus 497 -l~~~~~~~vIlDEaH~~kn~------~s~~~~~--l~~l~~~~rllLTgTP 539 (680)
..-..||+|||||||+-.+. .+..++. -..+++..|+.|||||
T Consensus 299 e~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 299 EAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred HcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 33457999999999986432 1222221 1234777899999999
No 62
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=2e-09 Score=121.29 Aligned_cols=164 Identities=16% Similarity=0.131 Sum_probs=108.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..+||+|.+++..+++ ++.+++...+|.|||+..+.-+ +... +.+|||+|. .|+.++.+.
T Consensus 10 ~~~r~~Q~~ai~~~l~---------g~dvlv~apTGsGKTl~y~lp~--l~~~--------~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL---------GRDCFVVMPTGGGKSLCYQLPA--LCSD--------GITLVISPLISLMEDQVLQ 70 (470)
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEcCCCCcHhHHHHHHH--HHcC--------CcEEEEecHHHHHHHHHHH
Confidence 3589999999988754 3579999999999998653322 2221 248999997 788999888
Q ss_pred HHHHhCCCCeeEeecCCcchh----hhhhhcCCCCEEEEeHHHHHHH---HHhh-hccCceEEEEcCcccccCccc---H
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKA----EDYVYSRVSPVLIISYEMLIRA---YQTI-VDTEFDLLICDEGHRLKNGKS---K 519 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~---~~~l-~~~~~~~vIlDEaH~~kn~~s---~ 519 (680)
+... ...+..+.+...... ......+..+++++|.+.+... ...+ ...++.+||+||||.+..... .
T Consensus 71 l~~~--gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 71 LKAS--GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred HHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 8764 234444444433221 1122345678999999987542 2333 445789999999999854321 1
Q ss_pred HHHHH----HhcccceEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy12466 520 LYELM----TGLNIRKRILLSGTPLQNDLQEFFYLNDFANP 556 (680)
Q Consensus 520 ~~~~l----~~l~~~~rllLTgTP~~n~~~el~sll~fl~p 556 (680)
.+..+ ..+.....++|||||-.....++...+.+-.|
T Consensus 149 ~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~ 189 (470)
T TIGR00614 149 DYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNP 189 (470)
T ss_pred HHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCC
Confidence 22222 23345668999999988777777776655443
No 63
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.03 E-value=3e-09 Score=119.58 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=104.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+.|+|.+++..+++ +...|+..++|+|||...+. ++..+.. ... ...+||+||+ .|..||.++
T Consensus 26 ~~t~iQ~~ai~~~l~---------g~dvi~~a~TGsGKT~a~~lpil~~l~~-~~~----~~~~lil~PtreLa~Q~~~~ 91 (460)
T PRK11776 26 EMTPIQAQSLPAILA---------GKDVIAQAKTGSGKTAAFGLGLLQKLDV-KRF----RVQALVLCPTRELADQVAKE 91 (460)
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEECCCCCcHHHHHHHHHHHHhhh-ccC----CceEEEEeCCHHHHHHHHHH
Confidence 477999999988753 46799999999999987543 4443322 211 2258999997 788999999
Q ss_pred HHHHh---CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 451 FKKWL---GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 451 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
+.++. +..++..+.|...............+|+|+|.+.+...... +.-..+++||+||||++-+.. ......
T Consensus 92 ~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i 171 (460)
T PRK11776 92 IRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAI 171 (460)
T ss_pred HHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHH
Confidence 98875 34566666665444333333345679999999998765542 222357899999999875432 223333
Q ss_pred HHhcc-cceEEEEeCCCC
Q psy12466 524 MTGLN-IRKRILLSGTPL 540 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP~ 540 (680)
+..+. ....+++|||+-
T Consensus 172 ~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 172 IRQAPARRQTLLFSATYP 189 (460)
T ss_pred HHhCCcccEEEEEEecCc
Confidence 44443 345699999984
No 64
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.00 E-value=5.9e-09 Score=117.01 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=103.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCC-CCCccceEEEEecc-chHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPY-GMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~-~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.+.|+|.+++..+++ +...|+...+|+|||+..+. ++..+...... ......++|||||. .|..||.+
T Consensus 23 ~pt~iQ~~ai~~il~---------g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 93 (456)
T PRK10590 23 EPTPIQQQAIPAVLE---------GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGE 93 (456)
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHH
Confidence 477999999988753 46799999999999998654 34444332111 00111358999997 78899999
Q ss_pred HHHHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 450 EFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 450 E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
++..+..... +....+...............+|+|+|.+.+...... +.-...++||+||||++-... ......
T Consensus 94 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~i 173 (456)
T PRK10590 94 NVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRV 173 (456)
T ss_pred HHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHH
Confidence 9999876543 3333333332222223345679999999998664432 222468899999999985433 222333
Q ss_pred HHhccc-ceEEEEeCCCC
Q psy12466 524 MTGLNI-RKRILLSGTPL 540 (680)
Q Consensus 524 l~~l~~-~~rllLTgTP~ 540 (680)
+..+.. ...+++|||+-
T Consensus 174 l~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 174 LAKLPAKRQNLLFSATFS 191 (456)
T ss_pred HHhCCccCeEEEEeCCCc
Confidence 444433 34799999974
No 65
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.99 E-value=4e-09 Score=128.69 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=105.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
-.+.+.|.+++.-+..- +....+...+++.++|.|||.+++-.+......+ .++||+||+ .|..|..+.
T Consensus 599 ~~~T~~Q~~aI~~il~d---~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g-------~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 599 FETTPDQAQAINAVLSD---MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENH-------KQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred CCCCHHHHHHHHHHHHH---hhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcC-------CeEEEEeCcHHHHHHHHHH
Confidence 35788999999887653 2233456789999999999998764443333332 359999998 566999999
Q ss_pred HHHHhCCC--CeeEeecCCcchhhhh----hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 451 FKKWLGLT--RMCPYHVNQKNKAEDY----VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 451 ~~~~~~~~--~v~~~~~~~~~~~~~~----~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
|.+++... ++..+.+......... ...+..+|+|+|++.+... +.-.+++++|+||+|++.. .....+
T Consensus 669 f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~l 742 (1147)
T PRK10689 669 FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERI 742 (1147)
T ss_pred HHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHH
Confidence 98876543 4444444433222211 1234678999999876432 2224688999999999832 233445
Q ss_pred Hhc-ccceEEEEeCCCCCCCH
Q psy12466 525 TGL-NIRKRILLSGTPLQNDL 544 (680)
Q Consensus 525 ~~l-~~~~rllLTgTP~~n~~ 544 (680)
..+ .....+++||||+...+
T Consensus 743 k~l~~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 743 KAMRADVDILTLTATPIPRTL 763 (1147)
T ss_pred HhcCCCCcEEEEcCCCCHHHH
Confidence 555 34578999999987654
No 66
>PRK02362 ski2-like helicase; Provisional
Probab=98.98 E-value=8.2e-09 Score=122.50 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=105.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
+|+|+|.+++..++. .+.+++++..+|.|||+.+.. ++..+. .+ +++|+|+|. +|+.|+.++
T Consensus 23 ~l~p~Q~~ai~~~~~--------~g~nvlv~APTGSGKTlia~lail~~l~-~~-------~kal~i~P~raLa~q~~~~ 86 (737)
T PRK02362 23 ELYPPQAEAVEAGLL--------DGKNLLAAIPTASGKTLIAELAMLKAIA-RG-------GKALYIVPLRALASEKFEE 86 (737)
T ss_pred cCCHHHHHHHHHHHh--------CCCcEEEECCCcchHHHHHHHHHHHHHh-cC-------CcEEEEeChHHHHHHHHHH
Confidence 588999999976432 357899999999999999854 444443 22 359999996 888999999
Q ss_pred HHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcc-cHHHH-HHH
Q psy12466 451 FKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGK-SKLYE-LMT 525 (680)
Q Consensus 451 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~-s~~~~-~l~ 525 (680)
+.++.+ +.++..+.|....... .....+|+|+|++.+......-. -...++||+||+|.+.+.. ..... .+.
T Consensus 87 ~~~~~~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~ 163 (737)
T PRK02362 87 FERFEELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLA 163 (737)
T ss_pred HHHhhcCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHH
Confidence 998754 3556666665432221 22457899999998865443211 1257999999999986532 12222 222
Q ss_pred hc----ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 526 GL----NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 526 ~l----~~~~rllLTgTP~~n~~~el~sll 551 (680)
++ ...+.++||||.- +..++...+
T Consensus 164 rl~~~~~~~qii~lSATl~--n~~~la~wl 191 (737)
T PRK02362 164 KLRRLNPDLQVVALSATIG--NADELADWL 191 (737)
T ss_pred HHHhcCCCCcEEEEcccCC--CHHHHHHHh
Confidence 22 3446799999974 356655433
No 67
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.98 E-value=5.7e-09 Score=124.74 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=105.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+.|.|..++..+.+- +....+...++..++|.|||..++..+......+ ..++|+||+ .|..|..+.|
T Consensus 451 ~~T~~Q~~aI~~I~~d---~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-------~qvlvLvPT~~LA~Q~~~~f 520 (926)
T TIGR00580 451 EETPDQLKAIEEIKAD---MESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-------KQVAVLVPTTLLAQQHFETF 520 (926)
T ss_pred CCCHHHHHHHHHHHhh---hcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-------CeEEEEeCcHHHHHHHHHHH
Confidence 4789999999988763 2223345789999999999998765544433333 259999998 6669999999
Q ss_pred HHHhCCCC--eeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 452 KKWLGLTR--MCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 452 ~~~~~~~~--v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
.++++... +..+.+....... .....+..+|+|+|+..+.+. +.-.+..+||+||+|++.- .....+.
T Consensus 521 ~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfgv---~~~~~L~ 594 (926)
T TIGR00580 521 KERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFGV---KQKEKLK 594 (926)
T ss_pred HHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC---CCcccCCEEEeecccccch---hHHHHHH
Confidence 99886544 3444443332211 112234678999999765422 2223578999999999732 3334455
Q ss_pred hc-ccceEEEEeCCCCCCCHH
Q psy12466 526 GL-NIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 526 ~l-~~~~rllLTgTP~~n~~~ 545 (680)
.+ .....++|||||+...+.
T Consensus 595 ~~~~~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 595 ELRTSVDVLTLSATPIPRTLH 615 (926)
T ss_pred hcCCCCCEEEEecCCCHHHHH
Confidence 55 345789999999875443
No 68
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.97 E-value=2.6e-09 Score=119.67 Aligned_cols=160 Identities=19% Similarity=0.286 Sum_probs=117.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E 450 (680)
-+|-..|+.+++-+.. ++.....-.-+|--|+|+|||+.|+..+......|. -+.+.+|+.++ .|-.+.
T Consensus 261 F~LT~aQ~~vi~EI~~---Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~-------Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 261 FKLTNAQKRVIKEILA---DLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY-------QAALMAPTEILAEQHYES 330 (677)
T ss_pred CCccHHHHHHHHHHHh---hhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC-------eeEEeccHHHHHHHHHHH
Confidence 4577889999987754 344455566788889999999998777766666654 27899999766 899999
Q ss_pred HHHHhCC--CCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 451 FKKWLGL--TRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 451 ~~~~~~~--~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
+.+|++. .+|.+..|+-+...+ .....+..+++|-|+..+..... -.+..+||+||=|++. ..++.+..
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~---F~~LgLVIiDEQHRFG--V~QR~~L~ 405 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE---FHNLGLVIIDEQHRFG--VHQRLALR 405 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee---ecceeEEEEecccccc--HHHHHHHH
Confidence 9999974 555666665544332 23445778999999998865443 3467899999999983 33433333
Q ss_pred Hhcc-cceEEEEeCCCCCCCHHH
Q psy12466 525 TGLN-IRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~~n~~~e 546 (680)
.+-. .++.+.|||||+..++.=
T Consensus 406 ~KG~~~Ph~LvMTATPIPRTLAl 428 (677)
T COG1200 406 EKGEQNPHVLVMTATPIPRTLAL 428 (677)
T ss_pred HhCCCCCcEEEEeCCCchHHHHH
Confidence 3334 589999999999987753
No 69
>PRK00254 ski2-like helicase; Provisional
Probab=98.97 E-value=1.1e-08 Score=121.23 Aligned_cols=160 Identities=22% Similarity=0.216 Sum_probs=107.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..|+|+|.+++.-.+ ..+.+.+++..+|.|||..+ ++++..+...+ +++|+|+|. .|+.|+.+
T Consensus 22 ~~l~~~Q~~ai~~~~--------~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~-------~~~l~l~P~~aLa~q~~~ 86 (720)
T PRK00254 22 EELYPPQAEALKSGV--------LEGKNLVLAIPTASGKTLVAEIVMVNKLLREG-------GKAVYLVPLKALAEEKYR 86 (720)
T ss_pred CCCCHHHHHHHHHHH--------hCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC-------CeEEEEeChHHHHHHHHH
Confidence 358899999996432 13578999999999999998 44555444322 369999997 78899999
Q ss_pred HHHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCc--ccHHHHHH
Q psy12466 450 EFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNG--KSKLYELM 524 (680)
Q Consensus 450 E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~--~s~~~~~l 524 (680)
++.+|.. +.++..++|...... ......+|+|+|++.+......- .-.+.++||+||+|.+... .......+
T Consensus 87 ~~~~~~~~g~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il 163 (720)
T PRK00254 87 EFKDWEKLGLRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMIL 163 (720)
T ss_pred HHHHHhhcCCEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHH
Confidence 9988643 345555665543322 12245789999999886543311 0135789999999998543 33333344
Q ss_pred Hhc-ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 525 TGL-NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 525 ~~l-~~~~rllLTgTP~~n~~~el~sll 551 (680)
..+ ...+.++||||.- +..++...+
T Consensus 164 ~~l~~~~qiI~lSATl~--n~~~la~wl 189 (720)
T PRK00254 164 THMLGRAQILGLSATVG--NAEELAEWL 189 (720)
T ss_pred HhcCcCCcEEEEEccCC--CHHHHHHHh
Confidence 444 3456799999984 356665433
No 70
>PTZ00424 helicase 45; Provisional
Probab=98.95 E-value=9.1e-09 Score=113.47 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=100.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+.|+|.+++..+++ +...++..++|+|||+.++..+........ ...++|||+|. .|..|+.+.+
T Consensus 50 ~~~~~Q~~ai~~i~~---------~~d~ii~apTGsGKT~~~~l~~l~~~~~~~----~~~~~lil~Pt~~L~~Q~~~~~ 116 (401)
T PTZ00424 50 KPSAIQQRGIKPILD---------GYDTIGQAQSGTGKTATFVIAALQLIDYDL----NACQALILAPTRELAQQIQKVV 116 (401)
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHhcCCC----CCceEEEECCCHHHHHHHHHHH
Confidence 578999999988754 367899999999999886544333332211 12469999997 6778888888
Q ss_pred HHHhCCCCeeE--eecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHHH
Q psy12466 452 KKWLGLTRMCP--YHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELMT 525 (680)
Q Consensus 452 ~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~ 525 (680)
..+.....+.. ..+...............+|+|+|.+.+...... +.-.++++||+||||++... .......+.
T Consensus 117 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~ 196 (401)
T PTZ00424 117 LALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFK 196 (401)
T ss_pred HHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHh
Confidence 88765443332 2222222221112223468999999988654432 22346899999999987542 233444555
Q ss_pred hcc-cceEEEEeCCCC
Q psy12466 526 GLN-IRKRILLSGTPL 540 (680)
Q Consensus 526 ~l~-~~~rllLTgTP~ 540 (680)
.+. ....+++|||+-
T Consensus 197 ~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 197 KLPPDVQVALFSATMP 212 (401)
T ss_pred hCCCCcEEEEEEecCC
Confidence 553 346799999974
No 71
>PTZ00110 helicase; Provisional
Probab=98.95 E-value=9.5e-09 Score=117.55 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=101.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHH-HHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI-ALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~ai-ali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+.|+|.+++..++. ++..|+..++|+|||++.+ .++..+.............+|||||+ .|..|+.++
T Consensus 152 ~pt~iQ~~aip~~l~---------G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~ 222 (545)
T PTZ00110 152 EPTPIQVQGWPIALS---------GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQ 222 (545)
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHH
Confidence 477899999877643 4788999999999999864 33334333211111112358999997 788999999
Q ss_pred HHHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 451 FKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 451 ~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
+.+|.... ++....+...............+|+|+|.+.+...+.. ..-.+.++||+||||++-... ....+.+
T Consensus 223 ~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il 302 (545)
T PTZ00110 223 CNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 302 (545)
T ss_pred HHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHH
Confidence 99987643 33333333333322233344679999999988765432 112357899999999986532 2233344
Q ss_pred Hhcc-cceEEEEeCCC
Q psy12466 525 TGLN-IRKRILLSGTP 539 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP 539 (680)
..+. ....+++|||.
T Consensus 303 ~~~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 303 SQIRPDRQTLMWSATW 318 (545)
T ss_pred HhCCCCCeEEEEEeCC
Confidence 4443 34568999996
No 72
>PRK01172 ski2-like helicase; Provisional
Probab=98.94 E-value=1.2e-08 Score=120.01 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=101.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+|+|+|.+++..+. .+.+.+++.++|.|||+++...+......+ +++++|+|. +|..|+.+++
T Consensus 22 ~l~~~Q~~ai~~l~---------~~~nvlv~apTGSGKTl~a~lail~~l~~~-------~k~v~i~P~raLa~q~~~~~ 85 (674)
T PRK01172 22 ELYDHQRMAIEQLR---------KGENVIVSVPTAAGKTLIAYSAIYETFLAG-------LKSIYIVPLRSLAMEKYEEL 85 (674)
T ss_pred CCCHHHHHHHHHHh---------cCCcEEEECCCCchHHHHHHHHHHHHHHhC-------CcEEEEechHHHHHHHHHHH
Confidence 48999999998763 246899999999999998765544433332 258999996 7889999999
Q ss_pred HHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcc-cHHHHH-HH-
Q psy12466 452 KKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGK-SKLYEL-MT- 525 (680)
Q Consensus 452 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~-s~~~~~-l~- 525 (680)
.++.. +.++....|....... .....+++|+|++.+......-. -.++++||+||+|.+.+.. ...... +.
T Consensus 86 ~~l~~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~ 162 (674)
T PRK01172 86 SRLRSLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSS 162 (674)
T ss_pred HHHhhcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHH
Confidence 88653 2344444443322211 12457999999998765433211 1357899999999986432 222222 22
Q ss_pred --hc-ccceEEEEeCCCCCCCHHHHHH
Q psy12466 526 --GL-NIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 526 --~l-~~~~rllLTgTP~~n~~~el~s 549 (680)
.+ ...+.++||||+- +..++..
T Consensus 163 ~~~~~~~~riI~lSATl~--n~~~la~ 187 (674)
T PRK01172 163 ARYVNPDARILALSATVS--NANELAQ 187 (674)
T ss_pred HHhcCcCCcEEEEeCccC--CHHHHHH
Confidence 22 2345799999973 3555543
No 73
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.93 E-value=1.5e-08 Score=117.46 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=103.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+.|+|.+++..++. +...|+...+|+|||.+. +.++..+..... ...+||+||. .|..||.++
T Consensus 28 ~ptpiQ~~ai~~ll~---------g~dvl~~ApTGsGKT~af~lpll~~l~~~~~-----~~~~LIL~PTreLa~Qv~~~ 93 (629)
T PRK11634 28 KPSPIQAECIPHLLN---------GRDVLGMAQTGSGKTAAFSLPLLHNLDPELK-----APQILVLAPTRELAVQVAEA 93 (629)
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEcCCCCcHHHHHHHHHHHHhhhccC-----CCeEEEEeCcHHHHHHHHHH
Confidence 477899999988754 367899999999999985 344444433211 2358999997 788999999
Q ss_pred HHHHh---CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 451 FKKWL---GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 451 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
+.+|. +...+..+++...............+|+|+|.+.+...+.. +.-....+|||||||.+-+.. ......
T Consensus 94 l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~I 173 (629)
T PRK11634 94 MTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETI 173 (629)
T ss_pred HHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHH
Confidence 88875 34556656555443332223345678999999998765432 222357889999999874432 233444
Q ss_pred HHhcc-cceEEEEeCCC
Q psy12466 524 MTGLN-IRKRILLSGTP 539 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP 539 (680)
+..+. ....+++|||.
T Consensus 174 l~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 174 MAQIPEGHQTALFSATM 190 (629)
T ss_pred HHhCCCCCeEEEEEccC
Confidence 55554 34569999996
No 74
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.92 E-value=1.5e-08 Score=117.35 Aligned_cols=162 Identities=18% Similarity=0.184 Sum_probs=110.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+||.|.+++..++. ++..+++..+|.|||+.....+ +... +.++||+|. +|+.++.+.+
T Consensus 13 ~fr~~Q~~~i~~il~---------g~dvlv~~PTG~GKTl~y~lpa--l~~~--------g~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 13 DFRPGQEEIISHVLD---------GRDVLVVMPTGGGKSLCYQVPA--LLLK--------GLTVVISPLISLMKDQVDQL 73 (591)
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEcCCCccHhHHHHHHH--HHcC--------CcEEEEcCCHHHHHHHHHHH
Confidence 589999999988754 3679999999999999865333 2222 248999997 7889999988
Q ss_pred HHHhCCCCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHH--HHHhhhccCceEEEEcCcccccCcc---cHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLLICDEGHRLKNGK---SKLYE 522 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~--~~~~l~~~~~~~vIlDEaH~~kn~~---s~~~~ 522 (680)
... +..+..+++....... .....+..+++++|.+.+.. ....+.....++||+||||.+...+ ...+.
T Consensus 74 ~~~--gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 74 RAA--GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred HHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 875 3445555544332221 12234567899999998853 2344556689999999999985322 12222
Q ss_pred HH----HhcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 523 LM----TGLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 523 ~l----~~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
.+ ..+.....+++|||+-.....++...+.+-.
T Consensus 152 ~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~ 188 (591)
T TIGR01389 152 RLGSLAERFPQVPRIALTATADAETRQDIRELLRLAD 188 (591)
T ss_pred HHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 22 3334455899999998887777777665433
No 75
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.92 E-value=2e-08 Score=120.77 Aligned_cols=166 Identities=23% Similarity=0.239 Sum_probs=104.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCC-CCccceEEEEecc-chHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYG-MPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~-~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.|+|+|.+++..+.+ +.++++...+|.|||..++. ++..+......+ .+....+|+|+|. .|..|+.+
T Consensus 32 ~~tpiQ~~Ai~~il~---------g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~ 102 (876)
T PRK13767 32 TFTPPQRYAIPLIHE---------GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHR 102 (876)
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHH
Confidence 489999999987642 46899999999999998754 444444322111 1123468999997 67777765
Q ss_pred HHH-------HHh-------CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh----hccCceEEEEcCcc
Q psy12466 450 EFK-------KWL-------GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDLLICDEGH 511 (680)
Q Consensus 450 E~~-------~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l----~~~~~~~vIlDEaH 511 (680)
.+. +++ +..++.+.+|...............+|+|+|.+.+......- .-.+.++||+||+|
T Consensus 103 ~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H 182 (876)
T PRK13767 103 NLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIH 182 (876)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechh
Confidence 433 333 244666677766544443333446789999999986433210 01257899999999
Q ss_pred cccCcc--cHHHHHHHhc-----ccceEEEEeCCCCCCCHHHHHH
Q psy12466 512 RLKNGK--SKLYELMTGL-----NIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 512 ~~kn~~--s~~~~~l~~l-----~~~~rllLTgTP~~n~~~el~s 549 (680)
.+.+.. ......+.++ ....++++|||.- ++.++..
T Consensus 183 ~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~va~ 225 (876)
T PRK13767 183 SLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEVAK 225 (876)
T ss_pred hhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHHHH
Confidence 986432 2222223222 2356799999973 3445443
No 76
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.91 E-value=1.9e-08 Score=114.55 Aligned_cols=160 Identities=15% Similarity=0.122 Sum_probs=103.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCC--CCCCccceEEEEecc-chHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGP--YGMPVIRKVLIVTPS-SLTSNW 447 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~--~~~~~~~~~LIV~P~-sll~qW 447 (680)
..+.|+|.+++..++. ++..|+..++|.|||+..+. ++..+..... ........+|||+|. .|..|+
T Consensus 142 ~~ptpiQ~~aip~il~---------g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi 212 (518)
T PLN00206 142 EFPTPIQMQAIPAALS---------GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQV 212 (518)
T ss_pred CCCCHHHHHHHHHHhc---------CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHH
Confidence 4578999999987753 47899999999999998654 3333332110 001112469999997 677999
Q ss_pred HHHHHHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHH
Q psy12466 448 NDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLY 521 (680)
Q Consensus 448 ~~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~ 521 (680)
.+++..+..... +....+...............+|+|+|.+.+...... +.-.+..+||+||||++-.. .....
T Consensus 213 ~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~ 292 (518)
T PLN00206 213 EDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVM 292 (518)
T ss_pred HHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHH
Confidence 999888865433 2223332222222122234578999999988665432 22235789999999998543 23344
Q ss_pred HHHHhcccceEEEEeCCCC
Q psy12466 522 ELMTGLNIRKRILLSGTPL 540 (680)
Q Consensus 522 ~~l~~l~~~~rllLTgTP~ 540 (680)
+.+..+.....+++|||.-
T Consensus 293 ~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 293 QIFQALSQPQVLLFSATVS 311 (518)
T ss_pred HHHHhCCCCcEEEEEeeCC
Confidence 4555566678899999974
No 77
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.91 E-value=1.6e-08 Score=117.19 Aligned_cols=162 Identities=18% Similarity=0.158 Sum_probs=107.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|+|.+++..++. ++.+++...+|.|||+.....+ +... +.+|||+|. +|+.++.+.+
T Consensus 25 ~~r~~Q~~ai~~il~---------g~dvlv~apTGsGKTl~y~lpa--l~~~--------g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 25 QFRPGQQEIIDAVLS---------GRDCLVVMPTGGGKSLCYQIPA--LVLD--------GLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEcCCCchHHHHHHHHH--HHcC--------CCEEEEecHHHHHHHHHHHH
Confidence 589999999987753 4678999999999998754322 2222 248999997 7888998888
Q ss_pred HHHhCCCCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHH--HHHhhhccCceEEEEcCcccccCcc---cHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLLICDEGHRLKNGK---SKLYE 522 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~--~~~~l~~~~~~~vIlDEaH~~kn~~---s~~~~ 522 (680)
... ...+....+....... .....+..+++++|.+.+.. ....+...++++||+||||.+...+ ...++
T Consensus 86 ~~~--gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~ 163 (607)
T PRK11057 86 LAN--GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYA 163 (607)
T ss_pred HHc--CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHH
Confidence 864 2333334333222211 11233557899999888763 3344556678999999999985422 22233
Q ss_pred HHHhc----ccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 523 LMTGL----NIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 523 ~l~~l----~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
.+..+ .....++||||+-.....++...+.+-.
T Consensus 164 ~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~ 200 (607)
T PRK11057 164 ALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND 200 (607)
T ss_pred HHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCC
Confidence 33333 3556799999998877777777665443
No 78
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.90 E-value=1.8e-08 Score=112.00 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=101.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHH-HHHHhcCCC--CCCccceEEEEecc-chHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI-WTLLRQGPY--GMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali-~~~~~~~~~--~~~~~~~~LIV~P~-sll~qW~ 448 (680)
.+.|.|.+++..++. +...++..++|+|||+..+..+ ..+...... .......+|||||. .|..|+.
T Consensus 30 ~pt~iQ~~aip~il~---------g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~ 100 (423)
T PRK04837 30 NCTPIQALALPLTLA---------GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIH 100 (423)
T ss_pred CCCHHHHHHHHHHhC---------CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHH
Confidence 356899999987653 4679999999999999865433 333322110 01112469999997 7889999
Q ss_pred HHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHH
Q psy12466 449 DEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYE 522 (680)
Q Consensus 449 ~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~ 522 (680)
+++..+... .++..+.+...............+|+|+|.+.+...... +.-..+.++|+||||++-... .....
T Consensus 101 ~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~ 180 (423)
T PRK04837 101 ADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRW 180 (423)
T ss_pred HHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHH
Confidence 998887653 445555554433322222334578999999998765432 223468899999999985432 22222
Q ss_pred HHHhcc---cceEEEEeCCCC
Q psy12466 523 LMTGLN---IRKRILLSGTPL 540 (680)
Q Consensus 523 ~l~~l~---~~~rllLTgTP~ 540 (680)
.+..+. ....+++|||.-
T Consensus 181 i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 181 LFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred HHHhCCCccceeEEEEeccCC
Confidence 333332 233589999974
No 79
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.89 E-value=2.7e-08 Score=114.37 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=103.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHH-HHHHHhcCC--CCCCccceEEEEecc-chHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL-IWTLLRQGP--YGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aial-i~~~~~~~~--~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
.+.|.|.+++..+++ ++..|+...+|+|||+..+.. +..+..... ...+...++|||||. .|..|+.
T Consensus 31 ~ptpiQ~~~ip~~l~---------G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~ 101 (572)
T PRK04537 31 RCTPIQALTLPVALP---------GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIH 101 (572)
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHH
Confidence 477899999988753 477999999999999986554 443432211 011112469999997 7889999
Q ss_pred HHHHHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccCcc--cHHH
Q psy12466 449 DEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKNGK--SKLY 521 (680)
Q Consensus 449 ~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn~~--s~~~ 521 (680)
+++.+|..... +..+++...............+|+|+|.+.+...+.. +.-...++|||||||.+-... ....
T Consensus 102 ~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~ 181 (572)
T PRK04537 102 KDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIR 181 (572)
T ss_pred HHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHH
Confidence 99999876543 4444554433322222334578999999998765432 222356889999999875422 2222
Q ss_pred HHHHhcc---cceEEEEeCCCCC
Q psy12466 522 ELMTGLN---IRKRILLSGTPLQ 541 (680)
Q Consensus 522 ~~l~~l~---~~~rllLTgTP~~ 541 (680)
..+..+. ....+++|||.-.
T Consensus 182 ~il~~lp~~~~~q~ll~SATl~~ 204 (572)
T PRK04537 182 FLLRRMPERGTRQTLLFSATLSH 204 (572)
T ss_pred HHHHhcccccCceEEEEeCCccH
Confidence 3333343 3457999999643
No 80
>KOG0298|consensus
Probab=98.89 E-value=3.8e-10 Score=131.85 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=90.0
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCC-CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh-------------
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLT-RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT------------- 256 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~------------- 256 (680)
..+.+|||||.+++.||-.||.++++.. ++..|.|-.+.....-.....|+|++|||+.++.....
T Consensus 419 ~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~q 498 (1394)
T KOG0298|consen 419 ETGATLIICPNAILMQWFEEIHKHISSLLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQ 498 (1394)
T ss_pred ecCceEEECcHHHHHHHHHHHHHhccccceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcc
Confidence 3678999999999999999999999766 77777776655443334456799999999999975321
Q ss_pred ---------hhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCC
Q psy12466 257 ---------IVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGI 298 (680)
Q Consensus 257 ---------l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~ 298 (680)
|..+.|=+|++|||+-+..-.|..++.+..|.+.+||+.||+
T Consensus 499 sr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGT 549 (1394)
T KOG0298|consen 499 SRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGT 549 (1394)
T ss_pred cCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCC
Confidence 444558899999999999999999999999999999999996
No 81
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.85 E-value=3.5e-08 Score=111.40 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=102.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCC--CCccceEEEEecc-chHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYG--MPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~--~~~~~~~LIV~P~-sll~qW~ 448 (680)
.+.|||.+++..+++ +...|++..+|+|||+..+. ++..+....... .....++|||+|. .|..|+.
T Consensus 109 ~~~~iQ~~ai~~~~~---------G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~ 179 (475)
T PRK01297 109 YCTPIQAQVLGYTLA---------GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIA 179 (475)
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHH
Confidence 478999999987753 46789999999999987543 344443322110 0012468999997 7889999
Q ss_pred HHHHHHhCCC--CeeEeecCCcchh-hhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCccc--HHH
Q psy12466 449 DEFKKWLGLT--RMCPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKS--KLY 521 (680)
Q Consensus 449 ~E~~~~~~~~--~v~~~~~~~~~~~-~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s--~~~ 521 (680)
+++..+.... .+..+.+...... .........+|+|+|.+++...... +.-.+.++||+||||.+.+... ...
T Consensus 180 ~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~ 259 (475)
T PRK01297 180 KDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVR 259 (475)
T ss_pred HHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHH
Confidence 9998886543 4444555433222 1222234578999999998654332 1123578999999999865432 223
Q ss_pred HHHHhcc---cceEEEEeCCCC
Q psy12466 522 ELMTGLN---IRKRILLSGTPL 540 (680)
Q Consensus 522 ~~l~~l~---~~~rllLTgTP~ 540 (680)
+.+..+. ....+++|||.-
T Consensus 260 ~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 260 QIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred HHHHhCCCCCCceEEEEEeecC
Confidence 3333332 345799999964
No 82
>PRK09401 reverse gyrase; Reviewed
Probab=98.83 E-value=4.5e-08 Score=119.87 Aligned_cols=128 Identities=17% Similarity=0.213 Sum_probs=90.7
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...+.++|+.++..++. +...++...+|+|||..++..+..+...+ .++|||||+ .|+.|+.+
T Consensus 78 G~~pt~iQ~~~i~~il~---------g~dv~i~ApTGsGKT~f~l~~~~~l~~~g-------~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL---------GESFAIIAPTGVGKTTFGLVMSLYLAKKG-------KKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred CCCCcHHHHHHHHHHHC---------CCcEEEEcCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeccHHHHHHHHH
Confidence 34588999998877643 46788999999999975544443333322 369999997 78899999
Q ss_pred HHHHHhCCCCe--eEeecCCc----chhh--hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 450 EFKKWLGLTRM--CPYHVNQK----NKAE--DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 450 E~~~~~~~~~v--~~~~~~~~----~~~~--~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.++++.....+ ....+... .+.. .....+.++|+|+|.+.+.+....+....++++|+||||++-
T Consensus 142 ~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 142 KLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhh
Confidence 99999865433 23333221 1111 112234689999999999988776666679999999999874
No 83
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.81 E-value=2.8e-08 Score=116.56 Aligned_cols=159 Identities=23% Similarity=0.183 Sum_probs=110.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|.|+.+|...+. .+.+.+++..+|.|||+.|...+..-...+. .+++.|||. +|..+=.++|
T Consensus 31 el~~~qq~av~~~~~--------~~~N~li~aPTgsGKTlIA~lai~~~l~~~~------~k~vYivPlkALa~Ek~~~~ 96 (766)
T COG1204 31 ELFNPQQEAVEKGLL--------SDENVLISAPTGSGKTLIALLAILSTLLEGG------GKVVYIVPLKALAEEKYEEF 96 (766)
T ss_pred HhhHHHHHHhhcccc--------CCCcEEEEcCCCCchHHHHHHHHHHHHHhcC------CcEEEEeChHHHHHHHHHHh
Confidence 789999999965432 2789999999999999999776665555431 359999996 8889999999
Q ss_pred HHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCc-ccHHHHH----
Q psy12466 452 KKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNG-KSKLYEL---- 523 (680)
Q Consensus 452 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~-~s~~~~~---- 523 (680)
.+|-. +.+|..+.++..... .....++|+|+||+.+........ -...++||+||+|.+... .......
T Consensus 97 ~~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r 173 (766)
T COG1204 97 SRLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVAR 173 (766)
T ss_pred hhHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHH
Confidence 95543 357777777665433 233578999999999865433322 236789999999999665 2222211
Q ss_pred HHhccc-ceEEEEeCCCCCCCHHHHHHH
Q psy12466 524 MTGLNI-RKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 524 l~~l~~-~~rllLTgTP~~n~~~el~sl 550 (680)
+..... -+.++||||- .|..|+...
T Consensus 174 ~~~~~~~~rivgLSATl--pN~~evA~w 199 (766)
T COG1204 174 MRRLNELIRIVGLSATL--PNAEEVADW 199 (766)
T ss_pred HHhhCcceEEEEEeeec--CCHHHHHHH
Confidence 122222 4679999995 345555443
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.77 E-value=1e-07 Score=111.66 Aligned_cols=153 Identities=22% Similarity=0.306 Sum_probs=104.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|.++|.+++..+.+. ......+|...+|.|||...+.++......+ +.+||++|. .+..|+.+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~------~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-------~~vLvLvPt~~L~~Q~~~~ 209 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAA------AGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-------KQALVLVPEIALTPQMLAR 209 (679)
T ss_pred CCCCHHHHHHHHHHHhc------cCCCcEEEECCCCChHHHHHHHHHHHHHHcC-------CeEEEEeCcHHHHHHHHHH
Confidence 36999999999888652 1345689999999999999887776665554 359999997 788999999
Q ss_pred HHHHhCCCCeeEeecCCcchh--hhh--hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc--CcccHHH--H
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKA--EDY--VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK--NGKSKLY--E 522 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~--~~~--~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k--n~~s~~~--~ 522 (680)
+.+.++. .+.++++...... ..+ ...+..+|+|.|.+.+. +.-.++++||+||+|... ......+ +
T Consensus 210 l~~~fg~-~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 210 FRARFGA-PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred HHHHhCC-CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 9998764 6777776544322 222 22346789999987653 222468899999999753 2222211 1
Q ss_pred H---H-HhcccceEEEEeCCCCCCC
Q psy12466 523 L---M-TGLNIRKRILLSGTPLQND 543 (680)
Q Consensus 523 ~---l-~~l~~~~rllLTgTP~~n~ 543 (680)
. + ........+++||||....
T Consensus 284 ~va~~ra~~~~~~~il~SATps~~s 308 (679)
T PRK05580 284 DLAVVRAKLENIPVVLGSATPSLES 308 (679)
T ss_pred HHHHHHhhccCCCEEEEcCCCCHHH
Confidence 1 1 1224456789999996433
No 85
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.77 E-value=8.9e-08 Score=113.09 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=104.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
+|++||.+++..+++ +.+.++...+|+|||+..+. ++..+... + ..++|||+|. .|..|-.++
T Consensus 36 ~p~~~Q~~ai~~il~---------G~nvvv~apTGSGKTla~~LPiL~~l~~~-~-----~~~aL~l~PtraLa~q~~~~ 100 (742)
T TIGR03817 36 RPWQHQARAAELAHA---------GRHVVVATGTASGKSLAYQLPVLSALADD-P-----RATALYLAPTKALAADQLRA 100 (742)
T ss_pred cCCHHHHHHHHHHHC---------CCCEEEECCCCCcHHHHHHHHHHHHHhhC-C-----CcEEEEEcChHHHHHHHHHH
Confidence 588999999988743 57899999999999998644 44444432 2 2368999997 777888888
Q ss_pred HHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh------hhccCceEEEEcCcccccCc-ccHHHH
Q psy12466 451 FKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT------IVDTEFDLLICDEGHRLKNG-KSKLYE 522 (680)
Q Consensus 451 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~------l~~~~~~~vIlDEaH~~kn~-~s~~~~ 522 (680)
+.++.. ..++..++|.......... ....+|+|+|.+++....-. ..-.+..+||+||||.+.+. .+....
T Consensus 101 l~~l~~~~i~v~~~~Gdt~~~~r~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~ 179 (742)
T TIGR03817 101 VRELTLRGVRPATYDGDTPTEERRWA-REHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVAL 179 (742)
T ss_pred HHHhccCCeEEEEEeCCCCHHHHHHH-hcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHH
Confidence 888752 4566777776554333222 23478999999988642110 00125789999999998652 233333
Q ss_pred HHHhc--------ccceEEEEeCCCCCCCHHHH
Q psy12466 523 LMTGL--------NIRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 523 ~l~~l--------~~~~rllLTgTP~~n~~~el 547 (680)
.+.++ .....+++|||.- ++.++
T Consensus 180 il~rL~ri~~~~g~~~q~i~~SATi~--n~~~~ 210 (742)
T TIGR03817 180 VLRRLRRLCARYGASPVFVLASATTA--DPAAA 210 (742)
T ss_pred HHHHHHHHHHhcCCCCEEEEEecCCC--CHHHH
Confidence 33333 1245799999953 34454
No 86
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.74 E-value=8.2e-08 Score=114.14 Aligned_cols=153 Identities=18% Similarity=0.240 Sum_probs=110.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..|+.||.+|++.+.+ +++.++.-.+|+|||..-+. ++..+..... .+.|+|-|. .|...-.+
T Consensus 69 ~~lY~HQ~~A~~~~~~---------G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 69 ERLYSHQVDALRLIRE---------GRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALANDQAE 133 (851)
T ss_pred ccccHHHHHHHHHHHC---------CCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhHhhHHH
Confidence 3499999999998853 58899999999999998654 4445444432 368999996 67788888
Q ss_pred HHHHHhCC----CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH------hhhccCceEEEEcCcccccCc-cc
Q psy12466 450 EFKKWLGL----TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ------TIVDTEFDLLICDEGHRLKNG-KS 518 (680)
Q Consensus 450 E~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~------~l~~~~~~~vIlDEaH~~kn~-~s 518 (680)
.|.+|..+ ..+..|+|...............+|++|+|+|+.-..- .....++.+||+||+|.+++. .|
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS 213 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGS 213 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchh
Confidence 88888743 34666777766555555566788999999999965221 112234899999999998764 56
Q ss_pred HHHHHHHhcc--------cceEEEEeCCC
Q psy12466 519 KLYELMTGLN--------IRKRILLSGTP 539 (680)
Q Consensus 519 ~~~~~l~~l~--------~~~rllLTgTP 539 (680)
...-.+++|. ....++.|||-
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~ 242 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATL 242 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccc
Confidence 6665666652 23458888885
No 87
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.73 E-value=7.7e-08 Score=116.01 Aligned_cols=162 Identities=22% Similarity=0.302 Sum_probs=108.1
Q ss_pred ccHHHHHHHHHhhhhhcc-CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLAS-LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~-~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
+|..+++..+++...... ..+.||++.|-.|+|||++++-++..+.... ....+++|+.. -|-.|-.++|..+
T Consensus 252 ~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~-----~~~~v~fvvDR~dLd~Q~~~~f~~~ 326 (962)
T COG0610 252 AQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELP-----KNPKVLFVVDRKDLDDQTSDEFQSF 326 (962)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhcc-----CCCeEEEEechHHHHHHHHHHHHHH
Confidence 444555533333322222 4567899999999999999998888887762 23468899986 5669999999998
Q ss_pred hCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh----hhccCceEEEEcCcccccCcccHHHHHHH-hccc
Q psy12466 455 LGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT----IVDTEFDLLICDEGHRLKNGKSKLYELMT-GLNI 529 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~----l~~~~~~~vIlDEaH~~kn~~s~~~~~l~-~l~~ 529 (680)
........ ...+..............|+|||-+.|...... ....+.-+||+||||+.-.+ ...+.+. .++.
T Consensus 327 ~~~~~~~~-~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G--~~~~~~~~~~~~ 403 (962)
T COG0610 327 GKVAFNDP-KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG--ELAKLLKKALKK 403 (962)
T ss_pred HHhhhhcc-cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc--HHHHHHHHHhcc
Confidence 76543333 333333333444444668999999999876643 23456678999999986433 2233333 3355
Q ss_pred ceEEEEeCCCCCCCHHH
Q psy12466 530 RKRILLSGTPLQNDLQE 546 (680)
Q Consensus 530 ~~rllLTgTP~~n~~~e 546 (680)
..-++.||||+...-.+
T Consensus 404 a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 404 AIFIGFTGTPIFKEDKD 420 (962)
T ss_pred ceEEEeeCCcccccccc
Confidence 67799999999765444
No 88
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.71 E-value=2.6e-07 Score=100.30 Aligned_cols=148 Identities=18% Similarity=0.254 Sum_probs=91.0
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL 455 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~ 455 (680)
||.++++.+.+. +....+++..+|.|||..++..+.. .. .++++++|. +++.+|.+.+.+++
T Consensus 1 hQ~~~~~~~~~~-------~~~~~~i~apTGsGKT~~~~~~~l~--~~--------~~~~~~~P~~aL~~~~~~~~~~~~ 63 (357)
T TIGR03158 1 HQVATFEALQSK-------DADIIFNTAPTGAGKTLAWLTPLLH--GE--------NDTIALYPTNALIEDQTEAIKEFV 63 (357)
T ss_pred CHHHHHHHHHcC-------CCCEEEEECCCCCCHHHHHHHHHHH--cC--------CCEEEEeChHHHHHHHHHHHHHHH
Confidence 799999888642 2345788999999999987654432 11 247999996 78899988888887
Q ss_pred C------CCCeeEeecCCcchhhhh--------------------hhcCCCCEEEEeHHHHHHHHHhhh----------c
Q psy12466 456 G------LTRMCPYHVNQKNKAEDY--------------------VYSRVSPVLIISYEMLIRAYQTIV----------D 499 (680)
Q Consensus 456 ~------~~~v~~~~~~~~~~~~~~--------------------~~~~~~~vvI~ty~~l~~~~~~l~----------~ 499 (680)
. ...+..+.+........+ .......+++|+++++........ .
T Consensus 64 ~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~ 143 (357)
T TIGR03158 64 DVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFY 143 (357)
T ss_pred HhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhh
Confidence 2 222333333211110000 012346789999999865332210 1
Q ss_pred cCceEEEEcCcccccCccc-------HHHHHHHhc-ccceEEEEeCCCCC
Q psy12466 500 TEFDLLICDEGHRLKNGKS-------KLYELMTGL-NIRKRILLSGTPLQ 541 (680)
Q Consensus 500 ~~~~~vIlDEaH~~kn~~s-------~~~~~l~~l-~~~~rllLTgTP~~ 541 (680)
..+++||+||+|.+..... .....+... ...+.++|||||-.
T Consensus 144 ~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 144 TKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred cCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH
Confidence 3578999999999864221 111222211 23578999999853
No 89
>KOG0383|consensus
Probab=98.68 E-value=2e-08 Score=114.37 Aligned_cols=106 Identities=26% Similarity=0.299 Sum_probs=92.2
Q ss_pred eEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh---------h-------------cccCCCCEEEEehhHHH
Q psy12466 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED---------Y-------------VYSRVSPVLIISYEMLI 251 (680)
Q Consensus 194 ~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~---------~-------------~~~~~~~V~itsYe~l~ 251 (680)
+.|+++|.|++.||.+||..|+|...+..|+|+.+.+... . .......|.++||++..
T Consensus 347 P~Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~ 426 (696)
T KOG0383|consen 347 PPLVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIE 426 (696)
T ss_pred CceeeccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcc
Confidence 6799999999999999999999999999999987643221 0 01233569999999999
Q ss_pred HHHHhhhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 252 RAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 252 ~~~~~l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
.....+..+.|.++|.||||||||..++..+.+..-...+|++|||+.
T Consensus 427 ~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtP 474 (696)
T KOG0383|consen 427 IDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTP 474 (696)
T ss_pred cCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCc
Confidence 999999999999999999999999999999999999999999999843
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.56 E-value=4.2e-07 Score=107.66 Aligned_cols=228 Identities=17% Similarity=0.210 Sum_probs=141.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~ 451 (680)
.--|-|..|++-..+= +.....---++|-|+|.|||-.|+-.+-..-..|. -+.|+||++++ .|-.+.|
T Consensus 594 eET~DQl~AI~eVk~D---M~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK-------QVAvLVPTTlLA~QHy~tF 663 (1139)
T COG1197 594 EETPDQLKAIEEVKRD---MESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK-------QVAVLVPTTLLAQQHYETF 663 (1139)
T ss_pred cCCHHHHHHHHHHHHH---hccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC-------eEEEEcccHHhHHHHHHHH
Confidence 3456799999887663 44555666799999999999998765544444443 49999999877 6667777
Q ss_pred HHHhCCCCeeEeecCCcc--h----hhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKN--K----AEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~--~----~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
.+-+.+..|.+-..+.-. + .......+.-||+|-|+..+.+++. -.+.+++|+||=|++. =+....++
T Consensus 664 keRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~---FkdLGLlIIDEEqRFG---Vk~KEkLK 737 (1139)
T COG1197 664 KERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK---FKDLGLLIIDEEQRFG---VKHKEKLK 737 (1139)
T ss_pred HHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcE---EecCCeEEEechhhcC---ccHHHHHH
Confidence 766666555554333221 1 1223456788999999998876543 2357899999999984 34445677
Q ss_pred hcccc-eEEEEeCCCCCCCHHHHHHHH---hhhCCCCCCC--HHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHH
Q psy12466 526 GLNIR-KRILLSGTPLQNDLQEFFYLN---DFANPGVLGS--LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKR 599 (680)
Q Consensus 526 ~l~~~-~rllLTgTP~~n~~~el~sll---~fl~p~~l~~--~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~ 599 (680)
.++++ ..+-|||||++..+.=-.+=+ ..+.-.+.+. -.+|...|.. .--+...++++
T Consensus 738 ~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~-----------------~~ireAI~REl 800 (1139)
T COG1197 738 ELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDD-----------------LLIREAILREL 800 (1139)
T ss_pred HHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCCh-----------------HHHHHHHHHHH
Confidence 77544 789999999998664221111 1121111111 1122222211 11223344555
Q ss_pred hcc---cee-eec------hhHHhhcCCCcEEEEEEecCCHHHH
Q psy12466 600 TAG---FIL-RRT------SDVQASLLNSKRETLLVCRATPLQQ 633 (680)
Q Consensus 600 l~~---f~l-Rrt------k~~v~~~LP~k~e~~v~v~ms~~Q~ 633 (680)
.+. |.+ -|. .+.+...+|+-.--+..=.|++.+-
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eL 844 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMREREL 844 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHH
Confidence 532 333 332 2345566899998899999998874
No 91
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.55 E-value=4.8e-07 Score=107.80 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=102.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..+||+|++++..++. ++.+++...+|.|||+....-+. ... +.+|||+|. +|+.++...
T Consensus 459 ~sFRp~Q~eaI~aiL~---------GrDVLVimPTGSGKSLcYQLPAL--~~~--------GiTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 459 HSFRPNQREIINATMS---------GYDVFVLMPTGGGKSLTYQLPAL--ICP--------GITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEcCCCccHHHHHHHHHH--HcC--------CcEEEEeCHHHHHHHHHHH
Confidence 5699999999987753 46799999999999987543322 111 248999997 777655555
Q ss_pred HHHHhCCCCeeEeecCCcchhh-hh---h--hcCCCCEEEEeHHHHHHH---HHhh---h-ccCceEEEEcCcccccCcc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAE-DY---V--YSRVSPVLIISYEMLIRA---YQTI---V-DTEFDLLICDEGHRLKNGK 517 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~-~~---~--~~~~~~vvI~ty~~l~~~---~~~l---~-~~~~~~vIlDEaH~~kn~~ 517 (680)
+... ...+..+.+....... .. . ..+..+++++|.+.+... ...+ . .....+|||||||.+-..+
T Consensus 520 L~~~--GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWG 597 (1195)
T PLN03137 520 LLQA--NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWG 597 (1195)
T ss_pred HHhC--CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcc
Confidence 5542 3344444433322111 11 1 125678999999987531 2222 2 2347899999999975422
Q ss_pred ---cHHHHHH----HhcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 518 ---SKLYELM----TGLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 518 ---s~~~~~l----~~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
..-++.+ ..+.....++||||.-.....|+...+.+..
T Consensus 598 hDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~ 642 (1195)
T PLN03137 598 HDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVN 642 (1195)
T ss_pred cchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCC
Confidence 1222322 2334556799999998887778877665543
No 92
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.55 E-value=5.7e-07 Score=97.72 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=85.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchh-------
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKA------- 471 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~------- 471 (680)
.++...+|.|||.+++..+......+. ..++++++|. +++.|+.+.+..+++. .+..+++......
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~-----~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQK-----ADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCC-----CCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCc
Confidence 478899999999998887765544332 2469999996 8889999999998775 3333333221100
Q ss_pred ----hhh-------hhcCCCCEEEEeHHHHHHHHHh--------hhccCceEEEEcCcccccCcccH-HHHHHHhcc--c
Q psy12466 472 ----EDY-------VYSRVSPVLIISYEMLIRAYQT--------IVDTEFDLLICDEGHRLKNGKSK-LYELMTGLN--I 529 (680)
Q Consensus 472 ----~~~-------~~~~~~~vvI~ty~~l~~~~~~--------l~~~~~~~vIlDEaH~~kn~~s~-~~~~l~~l~--~ 529 (680)
... ......+++++|.+.+...... +......+||+||+|.+...... ....+..+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~ 155 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDND 155 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 000 0112467999999987654332 11223478999999998643221 222233332 3
Q ss_pred ceEEEEeCCCC
Q psy12466 530 RKRILLSGTPL 540 (680)
Q Consensus 530 ~~rllLTgTP~ 540 (680)
...+++|||+-
T Consensus 156 ~~~i~~SATlp 166 (358)
T TIGR01587 156 VPILLMSATLP 166 (358)
T ss_pred CCEEEEecCch
Confidence 45699999974
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=6.4e-07 Score=101.38 Aligned_cols=127 Identities=24% Similarity=0.270 Sum_probs=87.0
Q ss_pred EEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchh--hhh--hh
Q psy12466 402 LADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--EDY--VY 476 (680)
Q Consensus 402 LaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~--~~~--~~ 476 (680)
|.-.+|.|||...+.++......+. .+||++|. +|..|+.+.|++.++. .+.++++...... ..+ ..
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g~-------~vLvlvP~i~L~~Q~~~~l~~~f~~-~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALGK-------SVLVLVPEIALTPQMIQRFKYRFGS-QVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCC-------eEEEEeCcHHHHHHHHHHHHHHhCC-cEEEEECCCCHHHHHHHHHHHH
Confidence 4558999999999888777666542 59999997 7889999999988764 5666766543322 222 12
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc--CcccHHH------HHHHhcccceEEEEeCCCCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK--NGKSKLY------ELMTGLNIRKRILLSGTPLQ 541 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k--n~~s~~~------~~l~~l~~~~rllLTgTP~~ 541 (680)
.+..+|+|+|.+.+. ..-.++++||+||+|... ......+ ...........+++||||..
T Consensus 74 ~g~~~IVVGTrsalf-----~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 74 NGEILVVIGTRSALF-----LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred cCCCCEEECChHHHc-----CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 356789999998763 223467999999999863 2222221 11223345668999999963
No 94
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.49 E-value=1.7e-06 Score=101.00 Aligned_cols=172 Identities=21% Similarity=0.185 Sum_probs=115.6
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..++|+|+.++..+. .|.+.++...+|.|||..|+. .+..+...++......=.+|.|.|. .|...-..
T Consensus 21 ~~~t~~Q~~a~~~i~---------~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~ 91 (814)
T COG1201 21 TSLTPPQRYAIPEIH---------SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRR 91 (814)
T ss_pred CCCCHHHHHHHHHHh---------CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHH
Confidence 458899999997763 578999999999999999855 5555665531111111248999996 55555555
Q ss_pred HHHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhc--cCceEEEEcCcccccCc--ccHHH
Q psy12466 450 EFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVD--TEFDLLICDEGHRLKNG--KSKLY 521 (680)
Q Consensus 450 E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~--~~~~~vIlDEaH~~kn~--~s~~~ 521 (680)
.+..|.. +..+.+.||......+........+|+|||.+++.-.... +.. .+..+||+||.|.+.+. +.+++
T Consensus 92 rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 92 RLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhh
Confidence 5555542 3456677777766666666667789999999999643321 111 24678999999999754 45555
Q ss_pred HHHHhc---c-cceEEEEeCCCCCCCHHHHHHHHhhhCCC
Q psy12466 522 ELMTGL---N-IRKRILLSGTPLQNDLQEFFYLNDFANPG 557 (680)
Q Consensus 522 ~~l~~l---~-~~~rllLTgTP~~n~~~el~sll~fl~p~ 557 (680)
-.+.+| . .-.|++||||=- ++.++ .+||.+.
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~ 206 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGF 206 (814)
T ss_pred hhHHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCC
Confidence 555555 2 356899999964 44444 5566554
No 95
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.48 E-value=2.2e-06 Score=79.31 Aligned_cols=130 Identities=18% Similarity=0.158 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
+.--+|-.-+|.|||..++- ++......+ .++||+.|+-++ .+|+.+...+..+....... .. .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~-------~rvLvL~PTRvv---a~em~~aL~~~~~~~~t~~~-~~----~ 68 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRR-------LRVLVLAPTRVV---AEEMYEALKGLPVRFHTNAR-MR----T 68 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT---------EEEEESSHHH---HHHHHHHTTTSSEEEESTTS-S------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHcc-------CeEEEecccHHH---HHHHHHHHhcCCcccCceee-ec----c
Confidence 34467788899999998765 344344433 369999998655 24455555554433322111 11 1
Q ss_pred hcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCcccHHHHHH-Hhc---ccceEEEEeCCCCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLYELM-TGL---NIRKRILLSGTPLQN 542 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s~~~~~l-~~l---~~~~rllLTgTP~~n 542 (680)
..+...|-+++|.++...... ....+|++||+||||.. ++.+-..+.. ..+ .....++|||||-..
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred ccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 234567899999998765432 23357999999999974 3444433332 222 223579999999543
No 96
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.47 E-value=1.1e-06 Score=107.92 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=90.8
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+.+.|+.++..++. +...++...+|+|||..++.++..+...+ .++|||+|+ .|..|+.+++
T Consensus 78 ~p~~iQ~~~i~~il~---------G~d~vi~ApTGsGKT~f~l~~~~~l~~~g-------~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLR---------GDSFAIIAPTGVGKTTFGLAMSLFLAKKG-------KRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred CCcHHHHHHHHHHhC---------CCeEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeCHHHHHHHHHHHH
Confidence 478899999877643 46788899999999986665555444332 369999997 7779999999
Q ss_pred HHHhCCCC--e---eEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 452 KKWLGLTR--M---CPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 452 ~~~~~~~~--v---~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
..++.... . ..+++....... .....+.++|+|+|.+.+.+....+.. .++++|+||||++-.
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 99886432 2 234554333221 112234589999999999887776655 899999999999854
No 97
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.44 E-value=1.5e-06 Score=102.74 Aligned_cols=161 Identities=22% Similarity=0.304 Sum_probs=103.9
Q ss_pred CcccHHHHHHHHHhhhhhcc-----------------------------CCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 375 KPHQRQGVSFLYERVCDLAS-----------------------------LDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~-----------------------------~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.|||.+||..++..+.+... ....+..+.+++|+|||.+++..+..+....
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~ 87 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQKY 87 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 58999999988876543221 1124678889999999999999998887775
Q ss_pred CCCCCccceEEEEeccchH-HHHH---------HHHHHHhCCCCe--eEeecCC---------cchhhhhhhcC-----C
Q psy12466 426 PYGMPVIRKVLIVTPSSLT-SNWN---------DEFKKWLGLTRM--CPYHVNQ---------KNKAEDYVYSR-----V 479 (680)
Q Consensus 426 ~~~~~~~~~~LIV~P~sll-~qW~---------~E~~~~~~~~~v--~~~~~~~---------~~~~~~~~~~~-----~ 479 (680)
+ ..++|||||...+ .... +.|...++..++ .+|.... ......+.... .
T Consensus 88 ~-----~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~ 162 (986)
T PRK15483 88 G-----LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNT 162 (986)
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCc
Confidence 4 3569999998433 3332 223333343333 3343322 11122232222 3
Q ss_pred CCEEEEeHHHHHHHH------Hhh--hc--cCc-------eEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCC
Q psy12466 480 SPVLIISYEMLIRAY------QTI--VD--TEF-------DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~------~~l--~~--~~~-------~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~ 541 (680)
-.|.+++-+++.+.. +.+ .. ..| -+||+||+|++.. ..+..+++..++.-+.+..|||--.
T Consensus 163 I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 163 IHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred eEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecCC
Confidence 579999999886531 111 11 122 3799999999965 3456788999999999999999754
No 98
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.41 E-value=4.1e-07 Score=83.18 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=73.3
Q ss_pred CCeEEEEECcccHHHH-HHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhh--hcCCCcEEEE
Q psy12466 192 ILRVLIVTPSSLTSNW-NDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLIC 267 (680)
Q Consensus 192 ~~~~LIV~P~sl~~nW-~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l--~~~~~~~vI~ 267 (680)
.+++||+||...+.+| .+++.+|.. ...+..++................+|++++|+.+....... ....++++|+
T Consensus 30 ~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iii 109 (144)
T cd00046 30 GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLIL 109 (144)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEE
Confidence 5689999998887655 566677664 34455555444333333333466889999999887765532 3457999999
Q ss_pred cCCCCCCCCCCCCC---ccccCCCCCCceeccCC
Q psy12466 268 DEKSLLKPPSGNSP---GNDSGIPSLPRKSDSGI 298 (680)
Q Consensus 268 DEaH~lKN~~s~~~---~a~~~l~~~~r~~LTG~ 298 (680)
||+|.+++...... .........+.+.+||+
T Consensus 110 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saT 143 (144)
T cd00046 110 DEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSAT 143 (144)
T ss_pred eCHHHHhhcchHHHHHHHHhhCCccceEEEEecc
Confidence 99999998875543 33444566678888875
No 99
>KOG0331|consensus
Probab=98.37 E-value=3e-06 Score=93.86 Aligned_cols=157 Identities=19% Similarity=0.178 Sum_probs=109.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHh-cCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLR-QGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~-~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
+.|-|..+.-.++ .++.++....+|.|||+.- |-++..+.. .+....+....+||++|+ -|..|-.++
T Consensus 114 PtpIQaq~wp~~l---------~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~ 184 (519)
T KOG0331|consen 114 PTPIQAQGWPIAL---------SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAE 184 (519)
T ss_pred Cchhhhcccceec---------cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHH
Confidence 3455665554443 3578899999999999973 445555554 333334444569999998 778999999
Q ss_pred HHHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCccccc--CcccHHHHHH
Q psy12466 451 FKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLK--NGKSKLYELM 524 (680)
Q Consensus 451 ~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~k--n~~s~~~~~l 524 (680)
+.+|..... ..++.|...............+|+|+|...+...++. +.-.+..++|+|||.++- ....+.-+.+
T Consensus 185 ~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il 264 (519)
T KOG0331|consen 185 AREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKIL 264 (519)
T ss_pred HHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHH
Confidence 999987655 4555555555544445556789999999999876654 233468899999999984 4567778888
Q ss_pred Hhc-ccce-EEEEeCCC
Q psy12466 525 TGL-NIRK-RILLSGTP 539 (680)
Q Consensus 525 ~~l-~~~~-rllLTgTP 539 (680)
.++ +..+ -++.|||=
T Consensus 265 ~~i~~~~rQtlm~saTw 281 (519)
T KOG0331|consen 265 SQIPRPDRQTLMFSATW 281 (519)
T ss_pred HhcCCCcccEEEEeeec
Confidence 888 4443 57777774
No 100
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.34 E-value=4.2e-06 Score=97.19 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=91.8
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|||.+.+..+.- ..|+|....+|.|||++++..+......+ +.++||+|+ .|..+|.+++
T Consensus 68 glrpydVQlig~l~l---------~~G~Iaem~TGeGKTLta~Lpa~l~aL~g-------~~V~VVTpn~yLA~Rdae~m 131 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL---------HQGNIAEMKTGEGKTLTATMPLYLNALTG-------KGAMLVTTNDYLAKRDAEEM 131 (762)
T ss_pred CCCccHHHHHHHHHh---------cCCceeEecCCcchHHHHHHHHHHHhhcC-------CceEEeCCCHHHHHHHHHHH
Confidence 478888888876642 24679999999999999765543322222 248999998 6778888887
Q ss_pred HHHhCCC--CeeEeecC-Ccc--hhhhhhhcCCCCEEEEeHHHHHHHH--H-------hhhccCceEEEEcCcccccCcc
Q psy12466 452 KKWLGLT--RMCPYHVN-QKN--KAEDYVYSRVSPVLIISYEMLIRAY--Q-------TIVDTEFDLLICDEGHRLKNGK 517 (680)
Q Consensus 452 ~~~~~~~--~v~~~~~~-~~~--~~~~~~~~~~~~vvI~ty~~l~~~~--~-------~l~~~~~~~vIlDEaH~~kn~~ 517 (680)
..++..+ .+.+..+. ... ..........++|+++|.+.+..++ + .....++.++|+||||.+--..
T Consensus 132 ~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe 211 (762)
T TIGR03714 132 GPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS 211 (762)
T ss_pred HHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc
Confidence 6665332 33332222 111 1111112235899999999984321 1 1223468899999999863221
Q ss_pred cHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 518 SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 518 s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
++..+++||.|-.. .++|..+
T Consensus 212 -----------artpliisg~~~~~--~~~y~~~ 232 (762)
T TIGR03714 212 -----------AQTPLVISGAPRVQ--SNLYHIA 232 (762)
T ss_pred -----------CcCCeeeeCCCccc--hHHHHHH
Confidence 33457788866433 3455554
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.27 E-value=2.1e-05 Score=81.53 Aligned_cols=148 Identities=22% Similarity=0.251 Sum_probs=106.0
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+|-|+|+.+-+-+++.+ ....--|+..-+|.|||-+....+....++|. ++.|..|. .++-.-..
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i-----~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~-------~vciASPRvDVclEl~~ 162 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYI-----KQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG-------RVCIASPRVDVCLELYP 162 (441)
T ss_pred ccccChhHHHHHHHHHHHH-----HhcCcEEEEEecCCCchhhhHHHHHHHHhcCC-------eEEEecCcccchHHHHH
Confidence 4679999999998888764 33456788889999999999999988888874 58888896 66677777
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc-cHHHHHHHhc-
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK-SKLYELMTGL- 527 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~-s~~~~~l~~l- 527 (680)
.+++-++...+...++.+..... .+++|+|-..+.+.. ..||++|+||+..+--.. -.+.-++.+-
T Consensus 163 Rlk~aF~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-----~aFD~liIDEVDAFP~~~d~~L~~Av~~ar 230 (441)
T COG4098 163 RLKQAFSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-----QAFDLLIIDEVDAFPFSDDQSLQYAVKKAR 230 (441)
T ss_pred HHHHhhccCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-----hhccEEEEeccccccccCCHHHHHHHHHhh
Confidence 88888888888888887654432 345554444443332 359999999999873332 2233344433
Q ss_pred -ccceEEEEeCCCCCC
Q psy12466 528 -NIRKRILLSGTPLQN 542 (680)
Q Consensus 528 -~~~~rllLTgTP~~n 542 (680)
....++.|||||-..
T Consensus 231 k~~g~~IylTATp~k~ 246 (441)
T COG4098 231 KKEGATIYLTATPTKK 246 (441)
T ss_pred cccCceEEEecCChHH
Confidence 345679999999643
No 102
>PRK14701 reverse gyrase; Provisional
Probab=98.24 E-value=6.1e-06 Score=103.88 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=88.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+++.|..++..+++ ++..++...+|+|||...+.++..+...+ ..+|||+|+ .|+.|..+.+
T Consensus 79 ~pt~iQ~~~i~~il~---------G~d~li~APTGsGKTl~~~~~al~~~~~g-------~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 79 EFWSIQKTWAKRILR---------GKSFSIVAPTGMGKSTFGAFIALFLALKG-------KKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEEcCCCCHHHHHHHHHHHHHhcC-------CeEEEEECHHHHHHHHHHHH
Confidence 478899999988754 46788999999999984333332222222 358999997 7889999999
Q ss_pred HHHhCC----CCeeEeecCCcchhhh----hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 452 KKWLGL----TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 452 ~~~~~~----~~v~~~~~~~~~~~~~----~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
..++.. .++..+++........ ....+..+|+|+|.+.+......+....++++|+||||.+-
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecc
Confidence 988753 3445555554433221 12235689999999988776665555679999999999873
No 103
>PRK09694 helicase Cas3; Provisional
Probab=98.23 E-value=1.3e-05 Score=95.51 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=98.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
...+|+|..+.... .+++-.||-..||.|||-.++.++..+...+. .+++++..|. .+..+-.+.
T Consensus 285 ~~p~p~Q~~~~~~~---------~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-----~~gi~~aLPT~Atan~m~~R 350 (878)
T PRK09694 285 YQPRQLQTLVDALP---------LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-----ADSIIFALPTQATANAMLSR 350 (878)
T ss_pred CCChHHHHHHHhhc---------cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-----CCeEEEECcHHHHHHHHHHH
Confidence 35788998663211 23455788999999999999998887766543 3468999997 455666666
Q ss_pred HHH----HhCCCCeeEeecCCcchh----------------------hhhhh-c----CCCCEEEEeHHHHHHHHHh---
Q psy12466 451 FKK----WLGLTRMCPYHVNQKNKA----------------------EDYVY-S----RVSPVLIISYEMLIRAYQT--- 496 (680)
Q Consensus 451 ~~~----~~~~~~v~~~~~~~~~~~----------------------~~~~~-~----~~~~vvI~ty~~l~~~~~~--- 496 (680)
+.+ .++...+.+.|+...-.. ..+.. . -..+++|+|.+.+....-.
T Consensus 351 l~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh 430 (878)
T PRK09694 351 LEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH 430 (878)
T ss_pred HHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch
Confidence 654 344556666666443110 00111 0 1258999999887632211
Q ss_pred --h--hccCceEEEEcCcccccCcccHHHH-HHHhc--ccceEEEEeCCCCCCCHHHHH
Q psy12466 497 --I--VDTEFDLLICDEGHRLKNGKSKLYE-LMTGL--NIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 497 --l--~~~~~~~vIlDEaH~~kn~~s~~~~-~l~~l--~~~~rllLTgTP~~n~~~el~ 548 (680)
+ ....-.+||+||+|.+-........ .+..+ .....++||||+-..--.+|.
T Consensus 431 ~~lR~~~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 431 RFIRGFGLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred HHHHHHhhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHH
Confidence 1 1223458999999998443333222 23322 234579999998554434443
No 104
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.22 E-value=7.7e-06 Score=96.05 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=91.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
++|||.+++..++. +....++...+|+|||....+++..+... .....+++++||. .|..|=.+++.
T Consensus 16 PtpiQ~~~i~~il~--------G~~~v~~~apTGSGKTaa~aafll~~~~~----~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 16 PFPWQLSLAERFVA--------GQPPESCSTPTGLGKTSIIAAWLLAVEIG----AKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred CCHHHHHHHHHHHc--------CCCcceEecCCCCcccHHHHHhhcccccc----ccccceEEEeCchHHHHHHHHHHHH
Confidence 78999999987643 11246667899999997654444333211 1123445557797 77788888888
Q ss_pred HHhCC-------------------------CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--------h--
Q psy12466 453 KWLGL-------------------------TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--------I-- 497 (680)
Q Consensus 453 ~~~~~-------------------------~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--------l-- 497 (680)
++... .++..+.|...............+|+|.|.+++.+..-. .
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~p 163 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRP 163 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccccccccccc
Confidence 87642 233434444333333333334568999998777542210 0
Q ss_pred -h---ccCceEEEEcCcccccCcccHHHHHHHhc--cc----ceEEEEeCCCCC
Q psy12466 498 -V---DTEFDLLICDEGHRLKNGKSKLYELMTGL--NI----RKRILLSGTPLQ 541 (680)
Q Consensus 498 -~---~~~~~~vIlDEaH~~kn~~s~~~~~l~~l--~~----~~rllLTgTP~~ 541 (680)
. -.+..++|+||||..........+.+..+ .. ...+++|||+-.
T Consensus 164 i~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ 217 (844)
T TIGR02621 164 LHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRT 217 (844)
T ss_pred chhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCc
Confidence 0 12467999999993333233333333322 11 357999999843
No 105
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.21 E-value=1.4e-05 Score=99.05 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=89.4
Q ss_pred EcCCCCChHHHHHH-HHHHHHhcCCC-----CCCccceEEEEecc-chHHHHHHHHHH----H----------hCCCCee
Q psy12466 403 ADEMGLGKTLQCIA-LIWTLLRQGPY-----GMPVIRKVLIVTPS-SLTSNWNDEFKK----W----------LGLTRMC 461 (680)
Q Consensus 403 aDemGlGKT~~aia-li~~~~~~~~~-----~~~~~~~~LIV~P~-sll~qW~~E~~~----~----------~~~~~v~ 461 (680)
+..+|+|||+.+.. ++..+...... ..+...++|+|+|. .|..+=.++++. + ....++.
T Consensus 2 ~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~ 81 (1490)
T PRK09751 2 IAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 81 (1490)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEE
Confidence 46799999999865 55555543210 11123479999997 555554454432 1 1245667
Q ss_pred EeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccCc--ccHHHHHHHhc-----ccce
Q psy12466 462 PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKNG--KSKLYELMTGL-----NIRK 531 (680)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~~l-----~~~~ 531 (680)
+.+|...............+|+|||.+.+...+.. ..-.+.++||+||+|.+.+. .+.....+.+| ....
T Consensus 82 vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~Q 161 (1490)
T PRK09751 82 IRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQ 161 (1490)
T ss_pred EEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCe
Confidence 77777655544434445679999999998654321 11134789999999999754 23333333333 2346
Q ss_pred EEEEeCCCCCCCHHHHHH
Q psy12466 532 RILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 532 rllLTgTP~~n~~~el~s 549 (680)
+|+||||-- ++.++..
T Consensus 162 rIgLSATI~--n~eevA~ 177 (1490)
T PRK09751 162 RIGLSATVR--SASDVAA 177 (1490)
T ss_pred EEEEEeeCC--CHHHHHH
Confidence 899999973 3666654
No 106
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.17 E-value=1.2e-05 Score=93.41 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=92.0
Q ss_pred ccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHH----------HHhcCCCCCCccceEEEE
Q psy12466 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT----------LLRQGPYGMPVIRKVLIV 438 (680)
Q Consensus 369 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~----------~~~~~~~~~~~~~~~LIV 438 (680)
.....|++.|.+.=+.++..+ ..++..|+..++|.|||.|.=.++.. +..-.+ ....++++|+
T Consensus 156 ~~~~~l~~~~~~iQ~qil~~i-----~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~--~~~~~~ilvt 228 (675)
T PHA02653 156 FSKIPLASLQPDVQLKIFEAW-----ISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP--NFIERPIVLS 228 (675)
T ss_pred cccccCCchhHHHHHHHHHHH-----HhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc--ccCCcEEEEE
Confidence 445568887766655555542 24578999999999999885333221 111000 1112479999
Q ss_pred ecc-chHHHHHHHHHHHhCC-----CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccc
Q psy12466 439 TPS-SLTSNWNDEFKKWLGL-----TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHR 512 (680)
Q Consensus 439 ~P~-sll~qW~~E~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~ 512 (680)
+|. .++.|...++.+..+. ..+.+..+....... .......++++.|...... .-.++++||+||||.
T Consensus 229 ~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~-~t~~k~~~Ilv~T~~L~l~-----~L~~v~~VVIDEaHE 302 (675)
T PHA02653 229 LPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELI-NTNPKPYGLVFSTHKLTLN-----KLFDYGTVIIDEVHE 302 (675)
T ss_pred CcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHh-hcccCCCCEEEEeCccccc-----ccccCCEEEcccccc
Confidence 997 6668888888775543 233444443332111 1112245788887543111 123588999999999
Q ss_pred ccCcccHHHHHHHhcc--cceEEEEeCCCC
Q psy12466 513 LKNGKSKLYELMTGLN--IRKRILLSGTPL 540 (680)
Q Consensus 513 ~kn~~s~~~~~l~~l~--~~~rllLTgTP~ 540 (680)
...........++.+. .+..++||||.-
T Consensus 303 r~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 303 HDQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred CccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 7544433333343332 235799999984
No 107
>KOG0350|consensus
Probab=98.14 E-value=7.2e-06 Score=88.54 Aligned_cols=143 Identities=20% Similarity=0.238 Sum_probs=97.3
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
-..++|-|...+-|+++-.........+-.+++..+|.|||+. +|-++..+... +-. +=+.+||+|. .|..|-.
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R-~v~---~LRavVivPtr~L~~QV~ 232 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR-PVK---RLRAVVIVPTRELALQVY 232 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC-Ccc---ceEEEEEeeHHHHHHHHH
Confidence 3568999999999998764333334456688999999999998 45555555443 211 3468999997 6679999
Q ss_pred HHHHHHhCCCCeeEeecCCcchh--hhhhhc-----CCCCEEEEeHHHHHHHHHhhhc---cCceEEEEcCcccccCcc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKA--EDYVYS-----RVSPVLIISYEMLIRAYQTIVD---TEFDLLICDEGHRLKNGK 517 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~vvI~ty~~l~~~~~~l~~---~~~~~vIlDEaH~~kn~~ 517 (680)
++|.+|++...+.+....+.... +..... ...||+|+|...+...+..-.. ....++|+|||.++.+..
T Consensus 233 ~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 233 DTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQS 311 (620)
T ss_pred HHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHH
Confidence 99999998755544433333322 222111 2348999999999876653222 245689999999996643
No 108
>KOG0952|consensus
Probab=98.14 E-value=1.2e-05 Score=93.41 Aligned_cols=172 Identities=16% Similarity=0.193 Sum_probs=103.5
Q ss_pred hhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCC--CCCccceEEEEecc-chHHHHHHHHHHHhC--CCCeeEee
Q psy12466 391 DLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPY--GMPVIRKVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYH 464 (680)
Q Consensus 391 ~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~--~~~~~~~~LIV~P~-sll~qW~~E~~~~~~--~~~v~~~~ 464 (680)
...+....++|++..+|.|||..+.. ++..+...... ..-..-+++.|+|. +|...-.+.+.+-+. +..+.-+.
T Consensus 120 p~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELT 199 (1230)
T KOG0952|consen 120 PVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELT 199 (1230)
T ss_pred hhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEec
Confidence 34456788999999999999999855 44444431110 01112468999995 666555555555444 34555555
Q ss_pred cCCcchhhhhhhcCCCCEEEEeHHHHHH----HH--HhhhccCceEEEEcCcccccCcccHHHHH-----HHhc----cc
Q psy12466 465 VNQKNKAEDYVYSRVSPVLIISYEMLIR----AY--QTIVDTEFDLLICDEGHRLKNGKSKLYEL-----MTGL----NI 529 (680)
Q Consensus 465 ~~~~~~~~~~~~~~~~~vvI~ty~~l~~----~~--~~l~~~~~~~vIlDEaH~~kn~~s~~~~~-----l~~l----~~ 529 (680)
|+....... ....+|++||.+.+.- .. ..| .....+||+||.|.+.........+ ++.. ..
T Consensus 200 GD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l-~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~ 275 (1230)
T KOG0952|consen 200 GDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSAL-FSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSM 275 (1230)
T ss_pred CcchhhHHH---HHhcCEEEecccceeeeeeeeccchhh-hhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhh
Confidence 543322222 3568999999988731 11 111 1246799999999998765544333 2221 33
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhh
Q psy12466 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEE 571 (680)
Q Consensus 530 ~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~ 571 (680)
-+.++||||-- +..| +..||..++....-.|...|.-
T Consensus 276 IRivgLSATlP--N~eD---vA~fL~vn~~~glfsFd~~yRP 312 (1230)
T KOG0952|consen 276 IRIVGLSATLP--NYED---VARFLRVNPYAGLFSFDQRYRP 312 (1230)
T ss_pred eEEEEeeccCC--CHHH---HHHHhcCCCccceeeecccccc
Confidence 46699999953 3444 4567776655555556555553
No 109
>KOG1123|consensus
Probab=98.08 E-value=9.3e-06 Score=87.51 Aligned_cols=98 Identities=17% Similarity=0.354 Sum_probs=68.9
Q ss_pred CCeEEEEECccc-HHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHH----------HHHhhh
Q psy12466 192 ILRVLIVTPSSL-TSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIR----------AYQTIV 258 (680)
Q Consensus 192 ~~~~LIV~P~sl-~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~----------~~~~l~ 258 (680)
-+++||+|-+++ +.||+..|..|.. ...+..|..+.+. ......+|+|++|.|+.. ..+.|.
T Consensus 345 kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~ 419 (776)
T KOG1123|consen 345 KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLR 419 (776)
T ss_pred cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHh
Confidence 358899999888 8999999999973 3455555554433 223557899999999964 345677
Q ss_pred cCCCcEEEEcCCCCCCCCCCCCCccc-cCCCCCCceeccC
Q psy12466 259 DTEFDLLICDEKSLLKPPSGNSPGND-SGIPSLPRKSDSG 297 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~s~~~~a~-~~l~~~~r~~LTG 297 (680)
...|+++|+||.|.+- ++.++-+ --+.+.+++.||.
T Consensus 420 ~~EWGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTA 456 (776)
T KOG1123|consen 420 GREWGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTA 456 (776)
T ss_pred cCeeeeEEeehhccch---HHHHHHHHHHHHHHhhcccee
Confidence 8889999999999984 3333322 2334445677765
No 110
>KOG0330|consensus
Probab=98.07 E-value=1.6e-05 Score=83.54 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=108.2
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+-+-|.+|+=..+ +++.+|-+.++|.|||.. +|-++..+..... .-..||++|. -|..|-.+.|
T Consensus 84 PT~IQ~~aiP~~L---------~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~lVLtPtRELA~QI~e~f 149 (476)
T KOG0330|consen 84 PTKIQSEAIPVAL---------GGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFALVLTPTRELAQQIAEQF 149 (476)
T ss_pred Cchhhhhhcchhh---------CCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEEEecCcHHHHHHHHHHH
Confidence 4456888876553 467899999999999987 5667777776432 2358999998 5667777778
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
+.+... +++.++-|.-.............+|+|+|...+.+.... +.-....++|+|||.++-+.+ -...+.+
T Consensus 150 e~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~IL 229 (476)
T KOG0330|consen 150 EALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYIL 229 (476)
T ss_pred HHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHH
Confidence 877544 455555555555544455566788999999999876653 222346789999999997753 4556667
Q ss_pred HhcccceE-EEEeCCCCC
Q psy12466 525 TGLNIRKR-ILLSGTPLQ 541 (680)
Q Consensus 525 ~~l~~~~r-llLTgTP~~ 541 (680)
..+...++ ++.|||.-.
T Consensus 230 k~ip~erqt~LfsATMt~ 247 (476)
T KOG0330|consen 230 KVIPRERQTFLFSATMTK 247 (476)
T ss_pred HhcCccceEEEEEeecch
Confidence 77765554 888888643
No 111
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.06 E-value=5.1e-06 Score=92.78 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=68.3
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCC-CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHH--HHhhhcCCCcEEEEc
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLT-RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA--YQTIVDTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~--~~~l~~~~~~~vI~D 268 (680)
.++|||||... +.||.+.+.++++.. .+..+.++.++.. ...|.++||.++.+. ...+....|++||+|
T Consensus 81 ~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~i~vat~qtl~~~~~l~~~~~~~~~liI~D 153 (442)
T COG1061 81 RSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGEKELE-------PAKVTVATVQTLARRQLLDEFLGNEFGLIIFD 153 (442)
T ss_pred CCEEEEECcHHHHHHHHHHHHHhcCCccccceecCceeccC-------CCcEEEEEhHHHhhhhhhhhhcccccCEEEEE
Confidence 35899999765 689999999998643 3334433332211 147999999999885 455666689999999
Q ss_pred CCCCCCCCCCCCCccccCCCCCC-ceeccCCC
Q psy12466 269 EKSLLKPPSGNSPGNDSGIPSLP-RKSDSGIG 299 (680)
Q Consensus 269 EaH~lKN~~s~~~~a~~~l~~~~-r~~LTG~~ 299 (680)
|+|++-.+..+. .+..+...+ |+.||++.
T Consensus 154 E~Hh~~a~~~~~--~~~~~~~~~~~LGLTATp 183 (442)
T COG1061 154 EVHHLPAPSYRR--ILELLSAAYPRLGLTATP 183 (442)
T ss_pred ccccCCcHHHHH--HHHhhhcccceeeeccCc
Confidence 999998665442 334455555 88888654
No 112
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.04 E-value=3.6e-06 Score=81.87 Aligned_cols=108 Identities=20% Similarity=0.174 Sum_probs=70.0
Q ss_pred CCeEEEEEC-cccHHHHHHHHHHHhCCCC-eeEEeecCCcchh--hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTP-SSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAE--DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P-~sl~~nW~~E~~k~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
.+++||+|| .++..+|.+++.++++... ......++..... ........+|++++|+.+...... ....+++++
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~i 133 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLV 133 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEE
Confidence 467999999 6778999999999986433 2222222222111 112223349999999999887765 445678999
Q ss_pred EEcCCCCCCC-CCCCCCccc-cCC-CCCCceeccCCC
Q psy12466 266 ICDEKSLLKP-PSGNSPGND-SGI-PSLPRKSDSGIG 299 (680)
Q Consensus 266 I~DEaH~lKN-~~s~~~~a~-~~l-~~~~r~~LTG~~ 299 (680)
|+||+|.+.+ ........+ ..+ ...+.+++||+.
T Consensus 134 IiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 134 ILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred EEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 9999999997 333333223 333 355577777654
No 113
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.01 E-value=5e-06 Score=80.58 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=68.5
Q ss_pred eEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecC------------C-cchhhhcccCCCCEEEEehhHHHHHHHh---
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQ------------K-NKAEDYVYSRVSPVLIISYEMLIRAYQT--- 256 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~V~itsYe~l~~~~~~--- 256 (680)
++|||||. +|+.+|.++|..+.+........... . .............+++++|..+......
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 131 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKK 131 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccc
Confidence 89999997 88899999998887633222111110 0 0011122345577999999999876542
Q ss_pred ----------hhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 257 ----------IVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 257 ----------l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
.....+++||+||||+..+... ++.+........+.|||+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp 182 (184)
T PF04851_consen 132 IDESARRSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATP 182 (184)
T ss_dssp ------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-
T ss_pred cccchhhhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCc
Confidence 2335689999999999986543 5555557777789998764
No 114
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=97.98 E-value=3.6e-05 Score=84.48 Aligned_cols=178 Identities=22% Similarity=0.181 Sum_probs=118.4
Q ss_pred CCccccccCcccc--------cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCC
Q psy12466 359 KPLVDVTVDGFLS--------RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGM 429 (680)
Q Consensus 359 ~~~~~~~~p~~l~--------~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~ 429 (680)
.++....+|+.+. ..|.|-|.-+|..-+ ..+.+-++...+++|||+.+ +|-+..+...+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GL--------LeG~nllVVSaTasGKTLIgElAGi~~~l~~g---- 261 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGL--------LEGENLLVVSATASGKTLIGELAGIPRLLSGG---- 261 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhcc--------ccCCceEEEeccCCCcchHHHhhCcHHHHhCC----
Confidence 3455667777764 568899998885432 34677889999999999987 67777766654
Q ss_pred CccceEEEEecc-chHHHHHHHHHHHhCCCCee--EeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhh-hccC
Q psy12466 430 PVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMC--PYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTI-VDTE 501 (680)
Q Consensus 430 ~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~--~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l-~~~~ 501 (680)
+++|.++|. .|..|=.++|.+-+..+... +--|.++-+.. ........||++-||+-+.-....- .-.+
T Consensus 262 ---~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgd 338 (830)
T COG1202 262 ---KKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGD 338 (830)
T ss_pred ---CeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccc
Confidence 369999997 66688888887766543332 33333332222 1233457899999999875433321 1235
Q ss_pred ceEEEEcCcccccCc--ccHHHHHHHhc----ccceEEEEeCCCCCCCHHHHHHHHhh
Q psy12466 502 FDLLICDEGHRLKNG--KSKLYELMTGL----NIRKRILLSGTPLQNDLQEFFYLNDF 553 (680)
Q Consensus 502 ~~~vIlDEaH~~kn~--~s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~sll~f 553 (680)
.+.||+||.|.+... ...+--.+.+| .....+.||||- .|+.|+...+..
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a 394 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGA 394 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCC
Confidence 789999999999662 23332233333 446779999995 567888776653
No 115
>KOG0338|consensus
Probab=97.97 E-value=3.2e-05 Score=83.78 Aligned_cols=147 Identities=18% Similarity=0.260 Sum_probs=95.5
Q ss_pred eEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEeccc-hH---HHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 400 AILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPSS-LT---SNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 400 ~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~s-ll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
.|=+..+|+|||..- +-++..+... |.. ..+.|+||+||+- |- ++-...+.+|+. +.+++.-|.-.-+....
T Consensus 221 Ica~A~TGsGKTAAF~lPiLERLlYr-Pk~-~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~-I~~~L~vGGL~lk~QE~ 297 (691)
T KOG0338|consen 221 ICACAATGSGKTAAFALPILERLLYR-PKK-VAATRVLVLVPTRELAIQVHSVTKQLAQFTD-ITVGLAVGGLDLKAQEA 297 (691)
T ss_pred hhheecccCCchhhhHHHHHHHHhcC-ccc-CcceeEEEEeccHHHHHHHHHHHHHHHhhcc-ceeeeeecCccHHHHHH
Confidence 444678999999753 3344444433 322 3478999999973 32 556667777766 56666666666666666
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhcc---CceEEEEcCcccccCcc-cHHHHHHHhcccceE--EEEeCCCCCCCHHHHH
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDT---EFDLLICDEGHRLKNGK-SKLYELMTGLNIRKR--ILLSGTPLQNDLQEFF 548 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~---~~~~vIlDEaH~~kn~~-s~~~~~l~~l~~~~r--llLTgTP~~n~~~el~ 548 (680)
......||||.|...+...+..-.++ ...++|+|||.++-... ......+.++.+.+| ++.|||. ...+.||.
T Consensus 298 ~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~ 376 (691)
T KOG0338|consen 298 VLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLA 376 (691)
T ss_pred HHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHH
Confidence 66668899999999997766543333 45689999999985432 122333445544444 9999995 44566665
Q ss_pred HH
Q psy12466 549 YL 550 (680)
Q Consensus 549 sl 550 (680)
++
T Consensus 377 sl 378 (691)
T KOG0338|consen 377 SL 378 (691)
T ss_pred Hh
Confidence 53
No 116
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.96 E-value=1.1e-05 Score=91.81 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=65.1
Q ss_pred eEEEEECc-ccHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
++||+||+ .|+.||.++|.+|... ..+....++... ....+|+|+||+.+.+....+. ..|++||+||+
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~-------~~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEa 231 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAK-------DTDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDEC 231 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhccccccceeEEecCccc-------CCCCCEEEeeHHHHhhchhhhc-cccCEEEEEch
Confidence 79999996 7789999999998742 222222222211 1346899999999866443222 36899999999
Q ss_pred CCCCCCCCCCCccccCC-CCCCceeccCCC
Q psy12466 271 SLLKPPSGNSPGNDSGI-PSLPRKSDSGIG 299 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l-~~~~r~~LTG~~ 299 (680)
|++... .....+..+ ++.+++.||++.
T Consensus 232 H~~~~~--~~~~il~~~~~~~~~lGLTATp 259 (501)
T PHA02558 232 HLFTGK--SLTSIITKLDNCKFKFGLTGSL 259 (501)
T ss_pred hcccch--hHHHHHHhhhccceEEEEeccC
Confidence 999753 233444555 466788888764
No 117
>KOG1513|consensus
Probab=97.95 E-value=0.00015 Score=81.96 Aligned_cols=257 Identities=18% Similarity=0.264 Sum_probs=140.9
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhcc-CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe-c
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLAS-LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT-P 440 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~-~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~-P 440 (680)
...+|..-...|-.-|+++|-|.++.-..... ...-|.+|.|-.|.||-.++..+|..-.-+|. ++.|.+- .
T Consensus 254 qlalP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR------KrAlW~SVS 327 (1300)
T KOG1513|consen 254 QLALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR------KRALWFSVS 327 (1300)
T ss_pred EEecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc------ceeEEEEec
Confidence 34556544567888899999998875322222 23457788899999997776555544333332 3456554 4
Q ss_pred cchHHHHHHHHHHHhCCCCeeEeecCCc--chhh-hhhhcCCCCEEEEeHHHHHHH-----------HHhhhc---cCc-
Q psy12466 441 SSLTSNWNDEFKKWLGLTRMCPYHVNQK--NKAE-DYVYSRVSPVLIISYEMLIRA-----------YQTIVD---TEF- 502 (680)
Q Consensus 441 ~sll~qW~~E~~~~~~~~~v~~~~~~~~--~~~~-~~~~~~~~~vvI~ty~~l~~~-----------~~~l~~---~~~- 502 (680)
+-|...-.+++...-. -.+.++...+- ..+. ..+..-...|+++||..+.-. +..|.+ ..|
T Consensus 328 sDLKfDAERDL~DigA-~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe 406 (1300)
T KOG1513|consen 328 SDLKFDAERDLRDIGA-TGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE 406 (1300)
T ss_pred cccccchhhchhhcCC-CCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc
Confidence 5666777777776532 12322222211 1111 111222456999999988532 111111 123
Q ss_pred eEEEEcCcccccC-------cccHHHHHHHhc----ccceEEEEeCCCCCCCHHHHHHHHhhh--CCC-CCCCHHHHHHH
Q psy12466 503 DLLICDEGHRLKN-------GKSKLYELMTGL----NIRKRILLSGTPLQNDLQEFFYLNDFA--NPG-VLGSLREFRKN 568 (680)
Q Consensus 503 ~~vIlDEaH~~kn-------~~s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~sll~fl--~p~-~l~~~~~F~~~ 568 (680)
.+||+||||+.|| ..+++.+.+..| ...+.+..|||--.. +.++..|.++- .++ .|+++.+|...
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsE-PrNMaYM~RLGlWGegtaf~eF~eFi~A 485 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASE-PRNMAYMVRLGLWGEGTAFPEFEEFIHA 485 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCC-cchhhhhhhhccccCCCcCccHHHHHHH
Confidence 5899999999998 345566665444 566778899996442 33333332221 122 35555555554
Q ss_pred hhhhhhccCCCCChHHHHHhhhhHHHHHHHHhcc-ceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh
Q psy12466 569 FEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG-FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA 647 (680)
Q Consensus 569 f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~ 647 (680)
.+. .+. ++-+ ....-..++. |+-|. + .+..-...+-.|+||++=+.+|+.-.+.+...+
T Consensus 486 vEk----RGv-GAME---------IVAMDMK~rGmYiARQ----L--SFkgVsFrieEv~ls~eF~k~Yn~a~~LW~ea~ 545 (1300)
T KOG1513|consen 486 VEK----RGV-GAME---------IVAMDMKLRGMYIARQ----L--SFKGVSFRIEEVPLSKEFRKVYNRAAELWAEAL 545 (1300)
T ss_pred HHh----cCC-ceee---------eeehhhhhhhhhhhhh----c--cccCceEEEEecccCHHHHHHHHHHHHHHHHHH
Confidence 433 111 1100 0001111111 22221 1 255567788889999999999998766554443
No 118
>PRK13766 Hef nuclease; Provisional
Probab=97.93 E-value=1.1e-05 Score=96.60 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI 266 (680)
..++|||||+ .|..||.++|+++++.. ++..+.+.......... ...++|+++|++.+..+.. .+.-..|++||
T Consensus 58 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~-~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liV 136 (773)
T PRK13766 58 GGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAEL-WEKAKVIVATPQVIENDLIAGRISLEDVSLLI 136 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 4689999998 78899999999998532 55566655433222222 2357899999999976542 23335699999
Q ss_pred EcCCCCCCCCCCCCCccccCCC---CCCceeccCCC
Q psy12466 267 CDEKSLLKPPSGNSPGNDSGIP---SLPRKSDSGIG 299 (680)
Q Consensus 267 ~DEaH~lKN~~s~~~~a~~~l~---~~~r~~LTG~~ 299 (680)
+||||++.+..+..+.+-.... ..+.++||++.
T Consensus 137 vDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP 172 (773)
T PRK13766 137 FDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASP 172 (773)
T ss_pred EECCccccccccHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 9999999876544332222222 23367777653
No 119
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.00023 Score=81.15 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=107.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.-|.|..++-.++. ++..+....+|+|||.. .|-++..+....... ..+.||++|+ -|..|-.+++
T Consensus 52 pt~IQ~~~IP~~l~---------g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~---~~~aLil~PTRELA~Qi~~~~ 119 (513)
T COG0513 52 PTPIQLAAIPLILA---------GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERK---YVSALILAPTRELAVQIAEEL 119 (513)
T ss_pred CCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHhcccccC---CCceEEECCCHHHHHHHHHHH
Confidence 45789888876643 47788889999999987 455555544321111 1118999998 6778988888
Q ss_pred HHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHH
Q psy12466 452 KKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELM 524 (680)
Q Consensus 452 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l 524 (680)
.++.. ..++..+.|...............+|+|.|...+...+.. +.-....++|+|||.++-+. .......+
T Consensus 120 ~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~ 199 (513)
T COG0513 120 RKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKIL 199 (513)
T ss_pred HHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHH
Confidence 88875 3455555555443333233333589999999998765543 33446789999999998664 33344455
Q ss_pred Hhccc-ceEEEEeCCCCCCCHHHHH
Q psy12466 525 TGLNI-RKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 525 ~~l~~-~~rllLTgTP~~n~~~el~ 548 (680)
..+.. ...++.|||.-. ...++.
T Consensus 200 ~~~p~~~qtllfSAT~~~-~i~~l~ 223 (513)
T COG0513 200 KALPPDRQTLLFSATMPD-DIRELA 223 (513)
T ss_pred HhCCcccEEEEEecCCCH-HHHHHH
Confidence 55543 566999999877 455553
No 120
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.85 E-value=9.6e-05 Score=83.58 Aligned_cols=165 Identities=21% Similarity=0.211 Sum_probs=113.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+||=|.+++..++. +..++.-..+|-||++.-- +-.+...| .+|||-|. +|+..-.+.+
T Consensus 17 ~FR~gQ~evI~~~l~---------g~d~lvvmPTGgGKSlCyQ--iPAll~~G--------~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 17 SFRPGQQEIIDALLS---------GKDTLVVMPTGGGKSLCYQ--IPALLLEG--------LTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred ccCCCHHHHHHHHHc---------CCcEEEEccCCCCcchHhh--hHHHhcCC--------CEEEECchHHHHHHHHHHH
Confidence 478899999988864 3789999999999998532 22222233 49999997 8888888888
Q ss_pred HHHhCCCCeeEeecCCcchh----hhhhhcCCCCEEEEeHHHHHHH--HHhhhccCceEEEEcCcccccCc-------cc
Q psy12466 452 KKWLGLTRMCPYHVNQKNKA----EDYVYSRVSPVLIISYEMLIRA--YQTIVDTEFDLLICDEGHRLKNG-------KS 518 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~--~~~l~~~~~~~vIlDEaH~~kn~-------~s 518 (680)
...- ..+...+..-.... ......+..+++..+.+.+... .+.+...+..+++|||||.+..- -.
T Consensus 78 ~~~G--i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 78 EAAG--IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred HHcC--ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 8742 34444433322211 1223345678999999988653 45567888999999999998432 22
Q ss_pred HHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy12466 519 KLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 519 ~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~ 558 (680)
........+...-+++||||--..--.|+...|..-.+..
T Consensus 156 ~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~ 195 (590)
T COG0514 156 RLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANI 195 (590)
T ss_pred HHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcce
Confidence 3333344445557899999998888888888877766543
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00021 Score=83.56 Aligned_cols=125 Identities=20% Similarity=0.291 Sum_probs=92.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+...|+-=...+. .+...-+...+|+|||.-.+.....+..++ ++++||+|+ .|+.|-.+.+
T Consensus 82 ~~ws~QR~WakR~~---------rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-------kr~yii~PT~~Lv~Q~~~kl 145 (1187)
T COG1110 82 RPWSAQRVWAKRLV---------RGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-------KRVYIIVPTTTLVRQVYERL 145 (1187)
T ss_pred CchHHHHHHHHHHH---------cCCceEEEcCCCCchhHHHHHHHHHHHhcC-------CeEEEEecCHHHHHHHHHHH
Confidence 45566764443332 234555667899999998887777777766 369999998 5669999999
Q ss_pred HHHhCCCC---eeE-eecCCcchh----hhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 452 KKWLGLTR---MCP-YHVNQKNKA----EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 452 ~~~~~~~~---v~~-~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
+++..... +.+ ||+.-..+. ......++++|+|||-+.+.++.+.+...+||+|++|.+..+
T Consensus 146 ~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 146 KKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 99884322 222 776643332 233456789999999999999999999999999999999875
No 122
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00032 Score=83.67 Aligned_cols=158 Identities=19% Similarity=0.232 Sum_probs=106.5
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
+.-.|-++|++++.-+- .+.+.+++..+|.|||+.+-.++......+. ++....|- +|..|=.
T Consensus 116 ~~F~LD~fQ~~a~~~Le---------r~esVlV~ApTssGKTvVaeyAi~~al~~~q-------rviYTsPIKALsNQKy 179 (1041)
T COG4581 116 YPFELDPFQQEAIAILE---------RGESVLVCAPTSSGKTVVAEYAIALALRDGQ-------RVIYTSPIKALSNQKY 179 (1041)
T ss_pred CCCCcCHHHHHHHHHHh---------CCCcEEEEccCCCCcchHHHHHHHHHHHcCC-------ceEeccchhhhhhhHH
Confidence 44568899999997763 3588999999999999999877776666553 48999995 7778888
Q ss_pred HHHHHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCccc-HHHH-
Q psy12466 449 DEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNGKS-KLYE- 522 (680)
Q Consensus 449 ~E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~~s-~~~~- 522 (680)
.+|..-+++. .+.++.|+..- ....+++++|-+.++...-.- .-.....||+||.|.+....- ..+.
T Consensus 180 rdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE 252 (1041)
T COG4581 180 RDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEE 252 (1041)
T ss_pred HHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHH
Confidence 8887776632 33444444321 235678888888887643221 123567899999999976432 2333
Q ss_pred HHHhccc-ceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 523 LMTGLNI-RKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 523 ~l~~l~~-~~rllLTgTP~~n~~~el~sll~ 552 (680)
.+..+.. -..++||||- .+..|+-.-+.
T Consensus 253 ~Ii~lP~~v~~v~LSATv--~N~~EF~~Wi~ 281 (1041)
T COG4581 253 VIILLPDHVRFVFLSATV--PNAEEFAEWIQ 281 (1041)
T ss_pred HHHhcCCCCcEEEEeCCC--CCHHHHHHHHH
Confidence 3333333 3679999995 24455544444
No 123
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.64 E-value=0.00026 Score=71.17 Aligned_cols=72 Identities=26% Similarity=0.358 Sum_probs=45.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHhcC-CCCCCccceEEEEecc-chHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLRQG-PYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~~~-~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
+|.+.|++|+..++. ..+ +++.-.+|+|||.+..+++..+.... .......+++||++|+ ..+.+-.+
T Consensus 1 ~ln~~Q~~Ai~~~~~---------~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~ 71 (236)
T PF13086_consen 1 KLNESQREAIQSALS---------SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILE 71 (236)
T ss_dssp ---HHHHHHHHHHCT---------SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHH
Confidence 477899999977643 245 88899999999988888887773210 0000113569999997 56677666
Q ss_pred HHHH
Q psy12466 450 EFKK 453 (680)
Q Consensus 450 E~~~ 453 (680)
.+.+
T Consensus 72 ~l~~ 75 (236)
T PF13086_consen 72 RLKK 75 (236)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 6666
No 124
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.63 E-value=0.00033 Score=82.44 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=75.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~ 448 (680)
.++||+.+.+..+.- ..|.|....+|.|||++++..+......|. .++||+|+..+ ..|.
T Consensus 76 g~~p~~vQl~~~~~l---------~~G~Iaem~TGeGKTL~a~lp~~l~al~G~-------~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 76 GMRPYDVQLIGALVL---------HEGNIAEMQTGEGKTLTATMPLYLNALEGK-------GVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred CCCCchHHHHhHHHH---------cCCceeeecCCCcchHHHHHHHHHHHHcCC-------CeEEEeCCHHHHHHHHHHH
Confidence 467777666655532 145588899999999987654443333332 48999998544 4566
Q ss_pred HHHHHHhCCCCeeEeecCCc-chhhhhhhcCCCCEEEEeHHHH-----HHHHH----hhhccCceEEEEcCcccc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQK-NKAEDYVYSRVSPVLIISYEML-----IRAYQ----TIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~vvI~ty~~l-----~~~~~----~l~~~~~~~vIlDEaH~~ 513 (680)
..+.++++ +++.++.+... ...... ....+|+++|...+ +.... ......+.++|+|||+.+
T Consensus 140 ~~l~~~lG-l~v~~i~g~~~~~~~r~~--~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsi 211 (790)
T PRK09200 140 GQVYEFLG-LTVGLNFSDIDDASEKKA--IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSI 211 (790)
T ss_pred HHHHhhcC-CeEEEEeCCCCcHHHHHH--hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccc
Confidence 66666654 44555544433 222222 23478999996555 33221 123356889999999987
No 125
>KOG0335|consensus
Probab=97.59 E-value=0.00055 Score=75.14 Aligned_cols=159 Identities=23% Similarity=0.285 Sum_probs=103.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCC-----CCCccceEEEEecc-chH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPY-----GMPVIRKVLIVTPS-SLT 444 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~-----~~~~~~~~LIV~P~-sll 444 (680)
....|+|+-++.-+ ..+++.+.+..+|.|||..= +-++..+...++. +.+...+.||++|+ .|.
T Consensus 95 ~~ptpvQk~sip~i---------~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~ 165 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII---------SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELV 165 (482)
T ss_pred cCCCcceeecccee---------ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHh
Confidence 45678999888544 35677888899999999874 3355555554331 11123468999997 788
Q ss_pred HHHHHHHHHHhCCCCe--eEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccC---cc
Q psy12466 445 SNWNDEFKKWLGLTRM--CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKN---GK 517 (680)
Q Consensus 445 ~qW~~E~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn---~~ 517 (680)
.|=.+|..+|.....+ +...+..............++++++|...+...++. +.-....++|||||.++-. ..
T Consensus 166 ~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~ 245 (482)
T KOG0335|consen 166 DQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFE 245 (482)
T ss_pred hHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcccc
Confidence 9999999999865433 333333333333334456799999999998765543 2222355999999998744 22
Q ss_pred cHHHHHHHhc-----ccceEEEEeCCC
Q psy12466 518 SKLYELMTGL-----NIRKRILLSGTP 539 (680)
Q Consensus 518 s~~~~~l~~l-----~~~~rllLTgTP 539 (680)
....+.+... ....-++.|||-
T Consensus 246 p~Ir~iv~~~~~~~~~~~qt~mFSAtf 272 (482)
T KOG0335|consen 246 PQIRKIVEQLGMPPKNNRQTLLFSATF 272 (482)
T ss_pred ccHHHHhcccCCCCccceeEEEEeccC
Confidence 3333333333 234458888885
No 126
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.57 E-value=0.00031 Score=81.60 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=72.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHH---HH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSN---WN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~q---W~ 448 (680)
.++||+.+.+..+.- ..|.|.-..+|.|||+.+...+......+. .++||+|+. |..| |.
T Consensus 54 g~~p~~vQlig~~~l---------~~G~Iaem~TGeGKTLva~lpa~l~aL~G~-------~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 54 GMRPFDVQLIGGIAL---------HKGKIAEMKTGEGKTLTATLPAYLNALTGK-------GVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred CCCccchHHhhhhhh---------cCCceeeecCCCccHHHHHHHHHHHHHhCC-------CEEEEcCCHHHHHHHHHHH
Confidence 366776666555531 145577799999999976543322222221 389999985 4444 44
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHH---------HhhhccCceEEEEcCccccc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY---------QTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~---------~~l~~~~~~~vIlDEaH~~k 514 (680)
..+.++++ +++.+..+........... ..+|++.|...+.-++ +.+....+.++|+||+|++.
T Consensus 118 ~~l~~~LG-Lsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 118 GQVYRFLG-LSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred HHHhccCC-CeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 44444444 4555554443332222222 3689999988762211 12334568999999999873
No 127
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.51 E-value=0.0008 Score=81.43 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=47.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
-+.||+|.+.+..+.+.+. .+..+++-..+|+|||+..+.-+......+ ++++|.+|+ .|..||..
T Consensus 244 ~~~r~~Q~~~~~~i~~~~~-----~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~-------~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 244 LEYRPEQLKLAELVLDQLT-----HSEKSLIEAPTGTGKTLGYLLPALYYAITE-------KPVVISTNTKVLQSQLLE 310 (850)
T ss_pred CccCHHHHHHHHHHHHHhc-----cCCcEEEECCCCCchhHHHHHHHHHHhcCC-------CeEEEEeCcHHHHHHHHH
Confidence 3589999998887777542 345677778999999998766554433321 369999997 56788855
No 128
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.50 E-value=0.001 Score=70.20 Aligned_cols=75 Identities=25% Similarity=0.207 Sum_probs=47.4
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
.||.|.+-...+++.+ ..++.+++-..+|+|||+..+..+.......+... ...++++++++ ++..+=..+++
T Consensus 9 ~r~~Q~~~m~~v~~~~-----~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 9 PYPIQYEFMEELKRVL-----DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCHHHHHHHHHHHHHH-----HcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-cccceeEEeccHHHHHHHHHHHH
Confidence 4899999888877753 24567899999999999998776644333222100 01246777775 34455455555
Q ss_pred HH
Q psy12466 453 KW 454 (680)
Q Consensus 453 ~~ 454 (680)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 43
No 129
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.50 E-value=0.001 Score=70.20 Aligned_cols=75 Identities=25% Similarity=0.207 Sum_probs=47.4
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
.||.|.+-...+++.+ ..++.+++-..+|+|||+..+..+.......+... ...++++++++ ++..+=..+++
T Consensus 9 ~r~~Q~~~m~~v~~~~-----~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 9 PYPIQYEFMEELKRVL-----DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI-QKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCHHHHHHHHHHHHHH-----HcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc-cccceeEEeccHHHHHHHHHHHH
Confidence 4899999888877753 24567899999999999998776644333222100 01246777775 34455455555
Q ss_pred HH
Q psy12466 453 KW 454 (680)
Q Consensus 453 ~~ 454 (680)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 43
No 130
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.48 E-value=0.00091 Score=79.82 Aligned_cols=136 Identities=21% Similarity=0.175 Sum_probs=79.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHHhCC---CCeeEeecCCcchh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKWLGL---TRMCPYHVNQKNKA 471 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~~~~---~~v~~~~~~~~~~~ 471 (680)
.+...|+..++|.|||.+....+...... .++++|+.|.-++ .|-.+.+.+..+. ..+. |......
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG-y~vr~~~-- 85 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAPGI-------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG-YRVRGEN-- 85 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhhcc-------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE-EEEcccc--
Confidence 35789999999999999986655433211 1369999998544 6666666544432 1111 1111111
Q ss_pred hhhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCccc-ccCcccH--HHHHH-Hhcc-cceEEEEeCCCCCCCH
Q psy12466 472 EDYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHR-LKNGKSK--LYELM-TGLN-IRKRILLSGTPLQNDL 544 (680)
Q Consensus 472 ~~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~-~kn~~s~--~~~~l-~~l~-~~~rllLTgTP~~n~~ 544 (680)
.......|+++|...+.+.+.. ..-.++++||+||+|. .-+.+-. ..+.+ ..++ ....++||||.-...+
T Consensus 86 ---~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l 161 (819)
T TIGR01970 86 ---KVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERL 161 (819)
T ss_pred ---ccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHH
Confidence 1122467999999988765442 1123689999999994 4333221 11222 2233 3356999999865443
No 131
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.48 E-value=0.00081 Score=80.34 Aligned_cols=135 Identities=20% Similarity=0.212 Sum_probs=77.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHHhCC---CCeeEeecCCcchhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKWLGL---TRMCPYHVNQKNKAE 472 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~~~~---~~v~~~~~~~~~~~~ 472 (680)
+...|+..++|.|||.+....+... ... .++++|++|.-++ .|-.+.+.+..+. ..+.... .....
T Consensus 20 ~~~vvv~A~TGSGKTt~~pl~lL~~--~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v-r~~~~-- 89 (812)
T PRK11664 20 APQVLLKAPTGAGKSTWLPLQLLQH--GGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM-RAESK-- 89 (812)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHc--CCc-----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe-cCccc--
Confidence 4678999999999999876444321 111 1369999998544 6666666554432 1121111 11111
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccc-cCcccHH---HHHHHhcc-cceEEEEeCCCCCCCH
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRL-KNGKSKL---YELMTGLN-IRKRILLSGTPLQNDL 544 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~-kn~~s~~---~~~l~~l~-~~~rllLTgTP~~n~~ 544 (680)
......|+++|...+.+.... ..-..+++||+||+|.. -+.+-.. .+.+..++ ....++||||.-...+
T Consensus 90 ---~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l 164 (812)
T PRK11664 90 ---VGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRL 164 (812)
T ss_pred ---cCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHH
Confidence 112346999999988765432 11246899999999962 2222111 11222333 3356999999865433
No 132
>KOG0947|consensus
Probab=97.46 E-value=0.00047 Score=79.93 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=92.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
-.|-.||++|+.-|. .+...++|.-+-.|||+.|=..++.....+ .|++.-.|- .|-.|=.++
T Consensus 296 FelD~FQk~Ai~~le---------rg~SVFVAAHTSAGKTvVAEYAialaq~h~-------TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLE---------RGDSVFVAAHTSAGKTVVAEYAIALAQKHM-------TRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred CCccHHHHHHHHHHH---------cCCeEEEEecCCCCcchHHHHHHHHHHhhc-------cceEecchhhhhccchHHH
Confidence 457789999997663 357799999999999999744443332222 357888885 555777888
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhc--cCceEEEEcCcccccCcc-cHHHHHHHhc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLICDEGHRLKNGK-SKLYELMTGL 527 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~--~~~~~vIlDEaH~~kn~~-s~~~~~l~~l 527 (680)
|+.-+++.. ++.|+..- ......+|+|-+.++...-.-.. ...+.||+||+|++.+.. .-.+..+.-+
T Consensus 360 Fk~tF~Dvg--LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIM 430 (1248)
T KOG0947|consen 360 FKETFGDVG--LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIM 430 (1248)
T ss_pred HHHhccccc--eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeee
Confidence 988887754 44544322 23578999999999874322111 237789999999996532 2222222222
Q ss_pred ccc--eEEEEeCCC
Q psy12466 528 NIR--KRILLSGTP 539 (680)
Q Consensus 528 ~~~--~rllLTgTP 539 (680)
-.+ ..++||||-
T Consensus 431 lP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 431 LPRHVNFILLSATV 444 (1248)
T ss_pred ccccceEEEEeccC
Confidence 222 237777773
No 133
>KOG0342|consensus
Probab=97.45 E-value=0.001 Score=72.23 Aligned_cols=151 Identities=20% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCCceEEEcCCCCChHHHHHHH-HHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHH---HhCCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIAL-IWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKK---WLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aial-i~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~---~~~~~~v~~~~~~~~~~ 470 (680)
.+...+-+.-+|+|||+.-+-- +..+....+..+ ..-.+|||||+ -|..|-..|.++ +.+...+.+.-|.....
T Consensus 118 ~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~ 196 (543)
T KOG0342|consen 118 EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS 196 (543)
T ss_pred CCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch
Confidence 3457888899999999874332 233332222111 12348999998 565777666554 44455555555544444
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHHhhhc---cCceEEEEcCcccccCc--ccHHHHHHHhcc-cceEEEEeCCCCCCCH
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQTIVD---TEFDLLICDEGHRLKNG--KSKLYELMTGLN-IRKRILLSGTPLQNDL 544 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~~l~~---~~~~~vIlDEaH~~kn~--~s~~~~~l~~l~-~~~rllLTgTP~~n~~ 544 (680)
.+........+++|+|...+...++.-.. ..-+++|+|||.++-.. .-..-+.+..+. .+..++.|||- ...+
T Consensus 197 ~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~-~~kV 275 (543)
T KOG0342|consen 197 VEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQ-PSKV 275 (543)
T ss_pred HHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCC-cHHH
Confidence 33333334889999999999776553222 23468999999998543 233344444443 34459999995 2334
Q ss_pred HHHH
Q psy12466 545 QEFF 548 (680)
Q Consensus 545 ~el~ 548 (680)
.++.
T Consensus 276 ~~l~ 279 (543)
T KOG0342|consen 276 KDLA 279 (543)
T ss_pred HHHH
Confidence 4443
No 134
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.43 E-value=0.0018 Score=74.78 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=46.1
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL 455 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~ 455 (680)
|.+-..++.+.+ ..+...++-..+|+|||+..+.-+........ .+++||++|+ .|..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al-----~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~-----~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSL-----RQKRIGMLEASTGVGKTLAMIMAALTMLKERP-----DQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHH-----hcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc-----CceEEEECCcHHHHHHHHHHHHHHH
Confidence 666666666653 23456677789999999987665433332211 1469999997 67799988877655
No 135
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=97.41 E-value=0.0015 Score=75.30 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=72.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHH---HHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTS---NWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~---qW~ 448 (680)
..+|-|..|+--++ .|.|.-..+|.|||+++...+......+ ..++||+|+. |.. +|.
T Consensus 103 ~p~~VQ~~~~~~ll-----------~G~Iae~~TGeGKTla~~lp~~~~al~G-------~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 103 RHFDVQLMGGLALL-----------SGRLAEMQTGEGKTLTATLPAGTAALAG-------LPVHVITVNDYLAERDAELM 164 (656)
T ss_pred CCChHHHHHHHHHh-----------CCCeeeeeCCCCcHHHHHHHHHHHhhcC-------CeEEEEcCcHHHHHHHHHHH
Confidence 34556777775553 2347789999999999765554443333 2599999984 444 455
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHH-----H-----------------------hhhcc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY-----Q-----------------------TIVDT 500 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~-----~-----------------------~l~~~ 500 (680)
..+-++++ +++.+..+........ .....+|++.|-..|.-++ . .....
T Consensus 165 ~~l~~~lG-lsv~~i~gg~~~~~r~--~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 165 RPLYEALG-LTVGCVVEDQSPDERR--AAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHHhhcC-CEEEEEeCCCCHHHHH--HHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 55555555 3444444433322222 2235688888866553221 1 12234
Q ss_pred CceEEEEcCcccc
Q psy12466 501 EFDLLICDEGHRL 513 (680)
Q Consensus 501 ~~~~vIlDEaH~~ 513 (680)
.++++|+||+..+
T Consensus 242 ~~~~aIvDEvDSi 254 (656)
T PRK12898 242 GLHFAIVDEADSV 254 (656)
T ss_pred ccceeEeecccce
Confidence 6889999999865
No 136
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.41 E-value=0.00084 Score=79.26 Aligned_cols=139 Identities=20% Similarity=0.268 Sum_probs=85.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hH---HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LT---SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll---~qW~~ 449 (680)
|+|||.+.+--+.. +.|.|.-..+|.|||+.++.-+......+ ++++||+|+. |. .+|..
T Consensus 93 ~tp~qvQ~I~~i~l---------~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------~~v~IVTpTrELA~Qdae~m~ 156 (970)
T PRK12899 93 MVPYDVQILGAIAM---------HKGFITEMQTGEGKTLTAVMPLYLNALTG-------KPVHLVTVNDYLAQRDCEWVG 156 (970)
T ss_pred CChHHHHHhhhhhc---------CCCeEEEeCCCCChHHHHHHHHHHHHhhc-------CCeEEEeCCHHHHHHHHHHHH
Confidence 78999988876643 35677779999999998754333222222 1378999974 44 56777
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHH-HHHHHh---------hhccCceEEEEcCcccccCcccH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-IRAYQT---------IVDTEFDLLICDEGHRLKNGKSK 519 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l-~~~~~~---------l~~~~~~~vIlDEaH~~kn~~s~ 519 (680)
.+.++++ +++....+........... ..+|+++|...+ ...... .....+.++|+|||..+--
T Consensus 157 ~L~k~lG-LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi---- 229 (970)
T PRK12899 157 SVLRWLG-LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI---- 229 (970)
T ss_pred HHHhhcC-CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh----
Confidence 7777765 4554444433322222122 478999998887 332221 1123578999999987521
Q ss_pred HHHHHHhcccceEEEEeCCCCCC
Q psy12466 520 LYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 520 ~~~~l~~l~~~~rllLTgTP~~n 542 (680)
-.++.-+++||.+-..
T Consensus 230 -------DEArTPLIISg~~~~~ 245 (970)
T PRK12899 230 -------DEARTPLIISGPGEKH 245 (970)
T ss_pred -------hccCCceeeeCCCccc
Confidence 1334447788776433
No 137
>KOG0345|consensus
Probab=97.38 E-value=0.0021 Score=69.51 Aligned_cols=135 Identities=18% Similarity=0.249 Sum_probs=85.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHH-hcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~-~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+-|-|..++-.++. +.-...-..+|+|||+.-+.=+..+. .......|.-=-.|||.|+ -|..|-.+
T Consensus 27 ~~mTpVQa~tIPlll~---------~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~ 97 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK---------NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIRE 97 (567)
T ss_pred cccCHHHHhhhHHHhc---------CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHH
Confidence 3477889988877764 35677778999999998655443333 3222222211136999997 44444443
Q ss_pred ---HHHHHhCCCCeeEeecCCcchhh-hhhhcCCCCEEEEeHHHHHHHHHh----hhccCceEEEEcCcccccC
Q psy12466 450 ---EFKKWLGLTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT----IVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 450 ---E~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~vvI~ty~~l~~~~~~----l~~~~~~~vIlDEaH~~kn 515 (680)
.|..+++.+....+-|......+ ........+|+|.|...+...+.. +.-....++|+|||.++-.
T Consensus 98 V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 98 VAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 44445566666666555433322 222334678999999988766554 4445688999999999844
No 138
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.37 E-value=0.00067 Score=67.45 Aligned_cols=145 Identities=23% Similarity=0.343 Sum_probs=70.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
+-..|..+++.|.+. .-.++.-..|+|||+.|++.+..+...+. .++++|+-|..-...+ + -
T Consensus 5 ~~~~Q~~~~~al~~~---------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-----~~kiii~Rp~v~~~~~---l-G 66 (205)
T PF02562_consen 5 KNEEQKFALDALLNN---------DLVIVNGPAGTGKTFLALAAALELVKEGE-----YDKIIITRPPVEAGED---L-G 66 (205)
T ss_dssp -SHHHHHHHHHHHH----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS------SEEEEEE-S--TT--------
T ss_pred CCHHHHHHHHHHHhC---------CeEEEECCCCCcHHHHHHHHHHHHHHhCC-----CcEEEEEecCCCCccc---c-c
Confidence 446899999888742 56788889999999999999988777765 3567777775422222 1 1
Q ss_pred HhCCC---CeeEee-----c----CCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHH
Q psy12466 454 WLGLT---RMCPYH-----V----NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLY 521 (680)
Q Consensus 454 ~~~~~---~v~~~~-----~----~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~ 521 (680)
|.|+. +...+. . ......... .....|-+.+...++- ......+||+||||++. .....
T Consensus 67 flpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~--~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t--~~~~k 137 (205)
T PF02562_consen 67 FLPGDLEEKMEPYLRPIYDALEELFGKEKLEEL--IQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLT--PEELK 137 (205)
T ss_dssp SS---------TTTHHHHHHHTTTS-TTCHHHH--HHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG----HHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHH--hhcCeEEEEehhhhcC-----ccccceEEEEecccCCC--HHHHH
Confidence 11110 000000 0 000011111 1133455555443321 12345899999999873 34555
Q ss_pred HHHHhcccceEEEEeCCCCCCCHH
Q psy12466 522 ELMTGLNIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 522 ~~l~~l~~~~rllLTgTP~~n~~~ 545 (680)
..+.++....+++++|-|.|.+..
T Consensus 138 ~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 138 MILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp HHHTTB-TT-EEEEEE--------
T ss_pred HHHcccCCCcEEEEecCceeecCC
Confidence 567778888999999999876543
No 139
>KOG0353|consensus
Probab=97.31 E-value=0.0025 Score=66.90 Aligned_cols=184 Identities=18% Similarity=0.122 Sum_probs=113.2
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
.-.+.||-|+++++..+. +...+|...+|-||++.-- +-.+...|- .|||||. +|+..-.
T Consensus 91 ~lekfrplq~~ain~~ma---------~ed~~lil~tgggkslcyq--lpal~adg~--------alvi~plislmedqi 151 (695)
T KOG0353|consen 91 HLEKFRPLQLAAINATMA---------GEDAFLILPTGGGKSLCYQ--LPALCADGF--------ALVICPLISLMEDQI 151 (695)
T ss_pred hHHhcChhHHHHhhhhhc---------cCceEEEEeCCCccchhhh--hhHHhcCCc--------eEeechhHHHHHHHH
Confidence 346789999999987643 4668899999999997531 112223332 7999997 7776655
Q ss_pred HHHHHHhCCCCeeEeecCCc-chhhh-----hhhcCCCCEEEEeHHHHHHHHH-------hhhccCceEEEEcCcccccC
Q psy12466 449 DEFKKWLGLTRMCPYHVNQK-NKAED-----YVYSRVSPVLIISYEMLIRAYQ-------TIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~-~~~~~-----~~~~~~~~vvI~ty~~l~~~~~-------~l~~~~~~~vIlDEaH~~kn 515 (680)
-.++...-+ ...+..... ..... .+....+.++.+|.+.+.+... .+....|.++-+||+|.+..
T Consensus 152 l~lkqlgi~--as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsq 229 (695)
T KOG0353|consen 152 LQLKQLGID--ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQ 229 (695)
T ss_pred HHHHHhCcc--hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhh
Confidence 556554221 112222222 22111 1123456688888888765432 24446789999999998732
Q ss_pred ------cccHH-HHHHHhcccceEEEEeCCCCCCCHHHHHHHHhh----------hCCCC-------CCCHHHHHHHhhh
Q psy12466 516 ------GKSKL-YELMTGLNIRKRILLSGTPLQNDLQEFFYLNDF----------ANPGV-------LGSLREFRKNFEE 571 (680)
Q Consensus 516 ------~~s~~-~~~l~~l~~~~rllLTgTP~~n~~~el~sll~f----------l~p~~-------l~~~~~F~~~f~~ 571 (680)
++.+. .-.-++++....++||||.-.+-+.|.-.++.. -+|+. -++.++|.+....
T Consensus 230 wghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k 309 (695)
T KOG0353|consen 230 WGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAK 309 (695)
T ss_pred hCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHH
Confidence 12222 222245577778999999999988887766543 23333 2456677777766
Q ss_pred hhh
Q psy12466 572 PIL 574 (680)
Q Consensus 572 ~i~ 574 (680)
.|.
T Consensus 310 ~i~ 312 (695)
T KOG0353|consen 310 LIK 312 (695)
T ss_pred Hhc
Confidence 554
No 140
>KOG0348|consensus
Probab=97.31 E-value=0.0013 Score=72.16 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=96.0
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCC-CCCccceEEEEecc-chHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPY-GMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~-~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
.-|..++--++ .++-.++-..+|.|||+.-+. ++..+....+. .+...-=.|||+|+ -|..|-.+-++
T Consensus 162 sVQkq~IP~lL---------~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~q 232 (708)
T KOG0348|consen 162 SVQKQAIPVLL---------EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQ 232 (708)
T ss_pred hHhhcchhhhh---------cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHH
Confidence 35666665553 257789999999999998544 55555544321 01011126999997 67788888888
Q ss_pred HHhCCCCeeE---eecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccC-----cccHHH
Q psy12466 453 KWLGLTRMCP---YHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKN-----GKSKLY 521 (680)
Q Consensus 453 ~~~~~~~v~~---~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn-----~~s~~~ 521 (680)
+.......++ +-|..+.+.+........+|+|.|...+...+.. +...+...||+|||.++.. .-++..
T Consensus 233 KLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il 312 (708)
T KOG0348|consen 233 KLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQIL 312 (708)
T ss_pred HHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHH
Confidence 8764433322 2233333333333445688999999999776543 3333567899999999843 234444
Q ss_pred HHHHhc---c--------cceEEEEeCCCC
Q psy12466 522 ELMTGL---N--------IRKRILLSGTPL 540 (680)
Q Consensus 522 ~~l~~l---~--------~~~rllLTgTP~ 540 (680)
+++..+ . ..-.++||||--
T Consensus 313 ~~v~~~~~~e~~~~~lp~q~q~mLlSATLt 342 (708)
T KOG0348|consen 313 KAVHSIQNAECKDPKLPHQLQNMLLSATLT 342 (708)
T ss_pred HHHhhccchhcccccccHHHHhHhhhhhhH
Confidence 555332 1 123589999963
No 141
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.31 E-value=0.00098 Score=79.21 Aligned_cols=167 Identities=17% Similarity=0.140 Sum_probs=99.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCC-ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLE-GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~-g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...+++|..+++...+. .... -.+|..++|.|||..++.++......+. ....+++.|.|- +++.+-.+
T Consensus 194 ~~~~~~~~~~~~~~~~~------~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~---~~~~r~i~vlP~~t~ie~~~~ 264 (733)
T COG1203 194 HEGYELQEKALELILRL------EKRSLLVVLEAPTGYGKTEASLILALALLDEKI---KLKSRVIYVLPFRTIIEDMYR 264 (733)
T ss_pred chhhHHHHHHHHHHHhc------ccccccEEEEeCCCCChHHHHHHHHHHHhhccc---cccceEEEEccHHHHHHHHHH
Confidence 34588999999888663 2233 7899999999999999998887776631 123578888886 67788888
Q ss_pred HHHHHhCCCCeeEe--ecCCcchhhhhhhc---------------CCCCEEEEeHHHHHHH-----HHhhhccCceEEEE
Q psy12466 450 EFKKWLGLTRMCPY--HVNQKNKAEDYVYS---------------RVSPVLIISYEMLIRA-----YQTIVDTEFDLLIC 507 (680)
Q Consensus 450 E~~~~~~~~~v~~~--~~~~~~~~~~~~~~---------------~~~~vvI~ty~~l~~~-----~~~l~~~~~~~vIl 507 (680)
.+..+++...+... ++............ ....+++++.+.+... ...+....-.++|+
T Consensus 265 r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIl 344 (733)
T COG1203 265 RAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVIL 344 (733)
T ss_pred HHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhh
Confidence 88888776555444 44443322111100 0011222222222210 01122234568999
Q ss_pred cCcccccCc-ccHHHHH-HHhc--ccceEEEEeCCCCCCCHHHH
Q psy12466 508 DEGHRLKNG-KSKLYEL-MTGL--NIRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 508 DEaH~~kn~-~s~~~~~-l~~l--~~~~rllLTgTP~~n~~~el 547 (680)
||+|.+-.. .....-+ +..+ .....++||||+-.---..|
T Consensus 345 DE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l 388 (733)
T COG1203 345 DEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKL 388 (733)
T ss_pred ccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHH
Confidence 999998665 2222222 2222 36678999999855433333
No 142
>KOG0343|consensus
Probab=97.27 E-value=0.0011 Score=72.97 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=95.4
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+..-|++.+-..++ |+-.+=|.-+|+|||+.- +-++..+....- +....=-+|||.|+ -|..|--+-+
T Consensus 92 ~teiQ~~~Ip~aL~---------G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW-s~~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 92 MTEIQRDTIPMALQ---------GHDVLGAAKTGSGKTLAFLVPVLEALYRLKW-SPTDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred HHHHHHhhcchhcc---------CcccccccccCCCceeeehHHHHHHHHHcCC-CCCCCceeEEecchHHHHHHHHHHH
Confidence 45567777755432 455566788999999874 334555444321 11111137999997 5556665555
Q ss_pred HHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 452 KKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 452 ~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
.+... ++...++-|..... .........+|+|||...+...++.- .-....++|+|||.++-.-+ ..+...+
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k-~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii 240 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVK-FELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAII 240 (758)
T ss_pred HHHhhccccccceeecCchhH-HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHH
Confidence 54321 22333333333222 22233456789999999998877653 33467899999999985432 2223333
Q ss_pred Hhc-ccceEEEEeCCCCCCCHHHHH
Q psy12466 525 TGL-NIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 525 ~~l-~~~~rllLTgTP~~n~~~el~ 548 (680)
..| ..+.-++.|||+-. ++.||.
T Consensus 241 ~~lP~~RQTLLFSATqt~-svkdLa 264 (758)
T KOG0343|consen 241 ENLPKKRQTLLFSATQTK-SVKDLA 264 (758)
T ss_pred HhCChhheeeeeecccch-hHHHHH
Confidence 444 33445999999844 345543
No 143
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.26 E-value=0.0047 Score=61.32 Aligned_cols=133 Identities=21% Similarity=0.223 Sum_probs=71.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~ 451 (680)
+|-+-|++++..++. .+.+-.+|.-..|+|||.....+...+...+ .++++++|+.-. ..-.+.
T Consensus 1 ~L~~~Q~~a~~~~l~-------~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-------~~v~~~apT~~Aa~~L~~~- 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILT-------SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-------KRVIGLAPTNKAAKELREK- 65 (196)
T ss_dssp -S-HHHHHHHHHHHH-------CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---------EEEEESSHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHh-------cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-------CeEEEECCcHHHHHHHHHh-
Confidence 367889999998864 2345678888999999988777776666654 258999998544 332222
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcc-cc
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN-IR 530 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~-~~ 530 (680)
.+ .....++..-....... ...... ....+++|||||..+. .......+..+. ..
T Consensus 66 ---~~-~~a~Ti~~~l~~~~~~~-~~~~~~-----------------~~~~~vliVDEasmv~--~~~~~~ll~~~~~~~ 121 (196)
T PF13604_consen 66 ---TG-IEAQTIHSFLYRIPNGD-DEGRPE-----------------LPKKDVLIVDEASMVD--SRQLARLLRLAKKSG 121 (196)
T ss_dssp ---HT-S-EEEHHHHTTEECCEE-CCSSCC------------------TSTSEEEESSGGG-B--HHHHHHHHHHS-T-T
T ss_pred ---hC-cchhhHHHHHhcCCccc-cccccc-----------------CCcccEEEEecccccC--HHHHHHHHHHHHhcC
Confidence 11 11111110000000000 000000 2346799999999883 334444444443 36
Q ss_pred eEEEEeCCCCCCCH
Q psy12466 531 KRILLSGTPLQNDL 544 (680)
Q Consensus 531 ~rllLTgTP~~n~~ 544 (680)
.++++.|-|.|-.+
T Consensus 122 ~klilvGD~~QL~p 135 (196)
T PF13604_consen 122 AKLILVGDPNQLPP 135 (196)
T ss_dssp -EEEEEE-TTSHHH
T ss_pred CEEEEECCcchhcC
Confidence 79999999987433
No 144
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.0032 Score=73.45 Aligned_cols=151 Identities=23% Similarity=0.285 Sum_probs=108.6
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|-+-|..++..+...+ ......+|.-.+|.|||-.-+.++.....+|. .+||++|. ++..|-.+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~-----~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-------qvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 197 LALNQEQQAAVEAILSSL-----GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-------QVLVLVPEIALTPQLLAR 264 (730)
T ss_pred cccCHHHHHHHHHHHHhc-----ccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-------EEEEEeccccchHHHHHH
Confidence 357889999999887641 33567899999999999999999999998874 49999997 888999999
Q ss_pred HHHHhCCCCeeEeecCCcchh--hhhh--hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccc--ccCcccHHHHH-
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKA--EDYV--YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHR--LKNGKSKLYEL- 523 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~--~~~~--~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~--~kn~~s~~~~~- 523 (680)
|+..++ .++.++|..-.... ..|. ..+...|||-+-+.+..= -.+..+||+||=|. +|..+...+.+
T Consensus 265 f~~rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P-----f~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 265 FKARFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP-----FKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred HHHHhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc-----hhhccEEEEeccccccccCCcCCCcCHH
Confidence 998888 56777766544333 3332 346778999998776332 23468999999996 45544433322
Q ss_pred -HH----hcccceEEEEeCCCC
Q psy12466 524 -MT----GLNIRKRILLSGTPL 540 (680)
Q Consensus 524 -l~----~l~~~~rllLTgTP~ 540 (680)
+. .....-.++-||||-
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCC
Confidence 11 123345688899994
No 145
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.24 E-value=0.00047 Score=84.70 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=51.4
Q ss_pred CCCeEEEEEC-cccHHHHHHHHHHHhCCCC--e-eEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh-------hhc
Q psy12466 191 YILRVLIVTP-SSLTSNWNDEFKKWLGLTR--M-CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-------IVD 259 (680)
Q Consensus 191 ~~~~~LIV~P-~sl~~nW~~E~~k~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~-------l~~ 259 (680)
..+++|+++| ..|+.||.++|..+..... + .++... ............|+|+||.++.+.... +.-
T Consensus 462 ~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~---~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~ 538 (1123)
T PRK11448 462 RFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIK---GLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPV 538 (1123)
T ss_pred ccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchh---hhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCC
Confidence 3579999999 5578999999999743111 1 112111 111112234578999999988654321 223
Q ss_pred CCCcEEEEcCCCCC
Q psy12466 260 TEFDLLICDEKSLL 273 (680)
Q Consensus 260 ~~~~~vI~DEaH~l 273 (680)
..||+||+|||||-
T Consensus 539 ~~fdlIIiDEaHRs 552 (1123)
T PRK11448 539 DQYDCIIVDEAHRG 552 (1123)
T ss_pred CcccEEEEECCCCC
Confidence 56999999999995
No 146
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.24 E-value=0.002 Score=74.35 Aligned_cols=137 Identities=22% Similarity=0.235 Sum_probs=88.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH--HH--H----HHHH-HHHhCCCCeeEeecC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT--SN--W----NDEF-KKWLGLTRMCPYHVN 466 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll--~q--W----~~E~-~~~~~~~~v~~~~~~ 466 (680)
+..++=+-+|+|+|||.+-+-.+..+-.... ..+++||||+-.+ ++ - .++| +.++...+.-.+...
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~YG-----~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~ 147 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKYG-----LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD 147 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHhC-----ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec
Confidence 3445667789999999999988888777654 3569999998444 21 1 2233 333333332222222
Q ss_pred CcchhhhhhhcCCCCEEEEeHHHHHHH---HHh---------------------hhccCceEEEEcCcccccCcccHHHH
Q psy12466 467 QKNKAEDYVYSRVSPVLIISYEMLIRA---YQT---------------------IVDTEFDLLICDEGHRLKNGKSKLYE 522 (680)
Q Consensus 467 ~~~~~~~~~~~~~~~vvI~ty~~l~~~---~~~---------------------l~~~~~~~vIlDEaH~~kn~~s~~~~ 522 (680)
...............|++.+.+.+.+. ... +... --+||+||-|++... .+.+.
T Consensus 148 ~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~~-~k~~~ 225 (985)
T COG3587 148 EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLGD-DKTYG 225 (985)
T ss_pred hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhcccc-hHHHH
Confidence 222223333445567888888887665 211 1111 237999999999765 88999
Q ss_pred HHHhcccceEEEEeCCC
Q psy12466 523 LMTGLNIRKRILLSGTP 539 (680)
Q Consensus 523 ~l~~l~~~~rllLTgTP 539 (680)
++.+++.-..+=.+||-
T Consensus 226 ~i~~l~pl~ilRfgATf 242 (985)
T COG3587 226 AIKQLNPLLILRFGATF 242 (985)
T ss_pred HHHhhCceEEEEecccc
Confidence 99999999888888885
No 147
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.24 E-value=0.0045 Score=64.12 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=72.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNW 447 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW 447 (680)
..+++-|..|+-.|. .|-|.-..+|=|||+++...+....-.| +++-||+.+.-+ .+|
T Consensus 76 ~~p~~vQll~~l~L~-----------~G~laEm~TGEGKTli~~l~a~~~AL~G-------~~V~vvT~NdyLA~RD~~~ 137 (266)
T PF07517_consen 76 LRPYDVQLLGALALH-----------KGRLAEMKTGEGKTLIAALPAALNALQG-------KGVHVVTSNDYLAKRDAEE 137 (266)
T ss_dssp ----HHHHHHHHHHH-----------TTSEEEESTTSHHHHHHHHHHHHHHTTS-------S-EEEEESSHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcc-----------cceeEEecCCCCcHHHHHHHHHHHHHhc-------CCcEEEeccHHHhhccHHH
Confidence 345566777775442 4668889999999999865555444444 358888888554 678
Q ss_pred HHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---------hhccCceEEEEcCcccc
Q psy12466 448 NDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---------IVDTEFDLLICDEGHRL 513 (680)
Q Consensus 448 ~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---------l~~~~~~~vIlDEaH~~ 513 (680)
...|-++++-. +...............+ .++|+-+|-..+..++-. .....++++|+||+..+
T Consensus 138 ~~~~y~~LGls-v~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 138 MRPFYEFLGLS-VGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHHHHHHTT---EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHHHHHHhhhc-cccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 88888887753 33333322222222222 356888887777654311 12357899999999865
No 148
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.23 E-value=0.00073 Score=61.84 Aligned_cols=119 Identities=22% Similarity=0.252 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-HHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+.+++.-+.|.|||..+-.++..+........ ...-+.+-||... ...+..++...+...... .
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~------- 69 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------R------- 69 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS------T-------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc------c-------
Confidence 355788899999999999998887764310000 1123456666544 466666666554321111 0
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc--ccceEEEEeCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL--NIRKRILLSGTP 539 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l--~~~~rllLTgTP 539 (680)
....+.+....+.+....-.+|||||+|++. .......+..+ .....++++|||
T Consensus 70 --------~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 --------QTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp --------S-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred --------CCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 0111222223344444445799999999984 25555555555 667789999999
No 149
>PRK10536 hypothetical protein; Provisional
Probab=97.21 E-value=0.0016 Score=66.74 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=82.1
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
.-..|...+.++.+ ..-.++.-+.|+|||+.+++++......+. ..+++|.=|.--. .|...
T Consensus 60 ~n~~Q~~~l~al~~---------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-----~~kIiI~RP~v~~----ge~LG 121 (262)
T PRK10536 60 RNEAQAHYLKAIES---------KQLIFATGEAGCGKTWISAAKAAEALIHKD-----VDRIIVTRPVLQA----DEDLG 121 (262)
T ss_pred CCHHHHHHHHHHhc---------CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----eeEEEEeCCCCCc----hhhhC
Confidence 44577777776643 246788899999999999998885443332 2344544443211 23333
Q ss_pred HhCCCC---eeEe-----ec----CCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHH
Q psy12466 454 WLGLTR---MCPY-----HV----NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLY 521 (680)
Q Consensus 454 ~~~~~~---v~~~-----~~----~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~ 521 (680)
|+|+.. +..| .. .+..............|-|.+...++. ....-++||+||||++.. ....
T Consensus 122 fLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaqn~~~--~~~k 194 (262)
T PRK10536 122 FLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQNVTA--AQMK 194 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcC-----CcccCCEEEEechhcCCH--HHHH
Confidence 333210 0000 00 000000101111234456665544432 123447999999999843 5666
Q ss_pred HHHHhcccceEEEEeCCCCCCCH
Q psy12466 522 ELMTGLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 522 ~~l~~l~~~~rllLTgTP~~n~~ 544 (680)
..+.++....+++++|-|-|.++
T Consensus 195 ~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 195 MFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HHHhhcCCCCEEEEeCChhhccC
Confidence 67788888999999999976543
No 150
>KOG0339|consensus
Probab=97.21 E-value=0.0034 Score=68.47 Aligned_cols=136 Identities=20% Similarity=0.199 Sum_probs=78.4
Q ss_pred EcCCCCChHHHHHHHHHHHHhcCCCCCCccce-EEEEecc-chHHHHHHHHHHHhCC--CC-eeEeecCCcchhhhhhhc
Q psy12466 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRK-VLIVTPS-SLTSNWNDEFKKWLGL--TR-MCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 403 aDemGlGKT~~aiali~~~~~~~~~~~~~~~~-~LIV~P~-sll~qW~~E~~~~~~~--~~-v~~~~~~~~~~~~~~~~~ 477 (680)
-.-+|.|||-.-+-=+.......+.-.|.-+| .||+||+ .+..|-..|.++|... ++ +.+|.|.+...... ...
T Consensus 266 IAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k-~Lk 344 (731)
T KOG0339|consen 266 IAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSK-ELK 344 (731)
T ss_pred eeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHH-hhh
Confidence 34578888864332221111111111222334 4778887 7889999999999632 34 44444444433333 333
Q ss_pred CCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHHHhccc-ceEEEEeCCC
Q psy12466 478 RVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELMTGLNI-RKRILLSGTP 539 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~~l~~-~~rllLTgTP 539 (680)
....+|++|.+.+...... ..-.+..++|+|||.++-.- ..+.......++. +..|+.|+|-
T Consensus 345 ~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf 411 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF 411 (731)
T ss_pred cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc
Confidence 6788999999998765432 22346789999999998442 2222222333333 3348888885
No 151
>KOG0951|consensus
Probab=97.14 E-value=0.0017 Score=77.32 Aligned_cols=170 Identities=18% Similarity=0.133 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCC----CCCccceEEEEec-cchHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPY----GMPVIRKVLIVTP-SSLTSNWNDEF 451 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~----~~~~~~~~LIV~P-~sll~qW~~E~ 451 (680)
.|.+.++....++++.......+.+|+..+|.|||-.|+.-+..-...+.. -+...-++..|+| .+|+..|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 445557777777776666677889999999999999886544333222211 0011235778888 58999999999
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHH----HHhhhccCceEEEEcCcccccCcccHH-----HH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA----YQTIVDTEFDLLICDEGHRLKNGKSKL-----YE 522 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~----~~~l~~~~~~~vIlDEaH~~kn~~s~~-----~~ 522 (680)
.++.....+.+..-.+..... .......+|+++|.+...-. .+.-...-+.++|+||.|.+....... .+
T Consensus 385 SkRla~~GI~V~ElTgD~~l~-~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaR 463 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLG-KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVAR 463 (1674)
T ss_pred HhhccccCcEEEEecccccch-hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHH
Confidence 999887777665544433221 12234577999988876211 111111236789999999994332222 22
Q ss_pred HHHhc----ccceEEEEeCCCCCCCHHHHHH
Q psy12466 523 LMTGL----NIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 523 ~l~~l----~~~~rllLTgTP~~n~~~el~s 549 (680)
..++. ...+.++||||-- |..|.-+
T Consensus 464 t~r~ses~~e~~RlVGLSATLP--Ny~DV~~ 492 (1674)
T KOG0951|consen 464 TFRRSESTEEGSRLVGLSATLP--NYEDVAS 492 (1674)
T ss_pred HHHHhhhcccCceeeeecccCC--chhhhHH
Confidence 33322 2446699999963 3444444
No 152
>KOG0328|consensus
Probab=97.11 E-value=0.0015 Score=66.40 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
-|..|+--++ .++..|--...|+|||.+ +|+++..+.-... ---+||+.|+ -|..|-.+-+...
T Consensus 53 IQqrAi~~Il---------kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r-----~tQ~lilsPTRELa~Qi~~vi~al 118 (400)
T KOG0328|consen 53 IQQRAIPQIL---------KGRDVIAQAQSGTGKTATFSISVLQSLDISVR-----ETQALILSPTRELAVQIQKVILAL 118 (400)
T ss_pred HHhhhhhhhh---------cccceEEEecCCCCceEEEEeeeeeecccccc-----eeeEEEecChHHHHHHHHHHHHHh
Confidence 4667765554 357788889999999987 4665554433221 1237999997 5667777777777
Q ss_pred hCCCCeeEeecCCcchh--hhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccC--cccHHHHHHHhcc
Q psy12466 455 LGLTRMCPYHVNQKNKA--EDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKN--GKSKLYELMTGLN 528 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn--~~s~~~~~l~~l~ 528 (680)
...+.+.++...+.+.. .-........++.-|...+.+.+. .|......++|+|||..+-| ...+.+...+.+.
T Consensus 119 g~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp 198 (400)
T KOG0328|consen 119 GDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP 198 (400)
T ss_pred cccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC
Confidence 66677766544432221 111122345677778777765443 35566789999999998754 4677888888885
Q ss_pred -cceEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy12466 529 -IRKRILLSGTPLQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 529 -~~~rllLTgTP~~n~~~el~sll~fl~p~~ 558 (680)
....+++|||- +.|+..+.++.++++
T Consensus 199 ~~~Qvv~~SATl----p~eilemt~kfmtdp 225 (400)
T KOG0328|consen 199 PGAQVVLVSATL----PHEILEMTEKFMTDP 225 (400)
T ss_pred CCceEEEEeccC----cHHHHHHHHHhcCCc
Confidence 67789999997 567777777776665
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.10 E-value=0.0027 Score=75.37 Aligned_cols=72 Identities=26% Similarity=0.357 Sum_probs=51.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+||.|++....+++.+ ..++.+++-..+|+|||+.+++.+.......+ ...++++.+.+ +-+.|-.+|+
T Consensus 10 ~~y~~Q~~~m~~v~~~l-----~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSL-----DRGDEAILEMPSGTGKTISLLSLILAYQQEKP----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCCHHHHHHHHHHHHHh-----ccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----ccccEEEEcccchHHHHHHHHH
Confidence 36899999999888764 34678999999999999988776655443221 12245555555 5668888888
Q ss_pred HH
Q psy12466 452 KK 453 (680)
Q Consensus 452 ~~ 453 (680)
++
T Consensus 81 k~ 82 (705)
T TIGR00604 81 RK 82 (705)
T ss_pred Hh
Confidence 77
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.07 E-value=0.0021 Score=74.95 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=86.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchh--hhhh--hcCCC
Q psy12466 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--EDYV--YSRVS 480 (680)
Q Consensus 406 mGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~--~~~~--~~~~~ 480 (680)
.|.|||-.-+.++......|. .+||++|. ++..|+.+.|+..++...+.++|..-.... ..|. ..+..
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-------~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-------GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-------eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 499999999999998888764 49999997 788999999999998667888887655443 2332 34566
Q ss_pred CEEEEeHHHHHHHHHhhhccCceEEEEcCccc--ccCcccHHHHH--HH----hcccceEEEEeCCCC
Q psy12466 481 PVLIISYEMLIRAYQTIVDTEFDLLICDEGHR--LKNGKSKLYEL--MT----GLNIRKRILLSGTPL 540 (680)
Q Consensus 481 ~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~--~kn~~s~~~~~--l~----~l~~~~rllLTgTP~ 540 (680)
.|+|-|.+.+. ..-.+.++||+||=|. +|...+..+.+ +. ....-..++-|+||-
T Consensus 242 ~IViGtRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 242 RVVVGTRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred cEEEEcceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 79999987652 2223578999999885 45443332211 11 123445577799994
No 155
>KOG1803|consensus
Probab=97.03 E-value=0.0026 Score=71.04 Aligned_cols=68 Identities=28% Similarity=0.441 Sum_probs=52.9
Q ss_pred cccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-HHH
Q psy12466 368 GFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-TSN 446 (680)
Q Consensus 368 ~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l~q 446 (680)
..+...|-+-|++|+.+.... ..-.++--.+|+|||.+...++..+..++. ++||.+|+.+ +.|
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~--------k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k-------~VLVcaPSn~AVdN 244 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINN--------KDLLIIHGPPGTGKTRTLVEIISQLVKQKK-------RVLVCAPSNVAVDN 244 (649)
T ss_pred ccCCccccHHHHHHHHHHhcc--------CCceEeeCCCCCCceeeHHHHHHHHHHcCC-------eEEEEcCchHHHHH
Confidence 346677889999999998652 134566779999999999999998888763 6999999854 466
Q ss_pred HHHH
Q psy12466 447 WNDE 450 (680)
Q Consensus 447 W~~E 450 (680)
-.+.
T Consensus 245 iver 248 (649)
T KOG1803|consen 245 IVER 248 (649)
T ss_pred HHHH
Confidence 6663
No 156
>PF10382 DUF2439: Protein of unknown function (DUF2439); InterPro: IPR018838 This domain is found at the N-terminal of proteins implicated in telomere maintenance in Saccharomyces cerevisiae (Baker's yeast) [] and in meiotic chromosome segregation in Schizosaccharomyces pombe (Fission yeast) [].
Probab=97.02 E-value=0.00092 Score=56.60 Aligned_cols=44 Identities=30% Similarity=0.544 Sum_probs=38.7
Q ss_pred EEEEEeeCCCCCCCCCcccceEEEEe--CceeEEecccccccccccc
Q psy12466 60 IFNVVYGKPSAKKHKSWEQDGVLEIS--GTMAILKDTLGKVIDSKVK 104 (680)
Q Consensus 60 ~~~~~w~k~~~~k~k~w~~~~~~~~~--~~~~~l~~~~gk~~~~~~~ 104 (680)
.|.|||-+..+||+|+|. ||+|.+. +..+.|.|+.|..+++...
T Consensus 3 ey~~lYT~q~~kK~K~W~-DG~l~~~~~~~kv~Lyde~~~~i~~~~~ 48 (83)
T PF10382_consen 3 EYECLYTHQKTKKRKKWH-DGFLKYHSFNKKVMLYDEDGNLIGSDFL 48 (83)
T ss_pred EEEEEEEccccccceeeE-CCEEEEEeCCCEEEEEcCCCCEEeEEEE
Confidence 499999999999999996 9999997 8889999998888776443
No 157
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.96 E-value=0.003 Score=68.60 Aligned_cols=88 Identities=23% Similarity=0.341 Sum_probs=53.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHH--HhcCCCCCCccceEEEEeccchHHHH-HHHHHHHh-CCCCeeEeecCCcchhhhhh
Q psy12466 400 AILADEMGLGKTLQCIALIWTL--LRQGPYGMPVIRKVLIVTPSSLTSNW-NDEFKKWL-GLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~--~~~~~~~~~~~~~~LIV~P~sll~qW-~~E~~~~~-~~~~v~~~~~~~~~~~~~~~ 475 (680)
.++--.+|+|||+.++.++..+ ...+ ...+++|++..+.+. .+.+.+-. +.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~-------~~~~~l~~n~~l~~~l~~~l~~~~~~~------------------ 58 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEG-------KKVLYLCGNHPLRNKLREQLAKKYNPK------------------ 58 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccC-------CceEEEEecchHHHHHHHHHhhhcccc------------------
Confidence 4566789999999999999988 3322 247889998666554 44454422 00
Q ss_pred hcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn 515 (680)
.....+.....+..... ......+|+|||||||++..
T Consensus 59 ---~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 ---LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 11122222333322222 22345799999999999976
No 158
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.94 E-value=0.011 Score=73.20 Aligned_cols=76 Identities=8% Similarity=0.080 Sum_probs=51.9
Q ss_pred eEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEc
Q psy12466 434 KVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICD 508 (680)
Q Consensus 434 ~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlD 508 (680)
.++|+|+. .-+....+.+.+.+|..++.++||.-..... .....+..+|+|+| +.+.+-+ .-.+.++||++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-dIierGI---DIP~v~~VIi~ 886 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-TIIETGI---DIPTANTIIIE 886 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-chhhccc---ccccCCEEEEe
Confidence 48999986 4456677778888888899999987544322 22345678999998 3333322 22357789999
Q ss_pred Ccccc
Q psy12466 509 EGHRL 513 (680)
Q Consensus 509 EaH~~ 513 (680)
.|+++
T Consensus 887 ~ad~f 891 (1147)
T PRK10689 887 RADHF 891 (1147)
T ss_pred cCCCC
Confidence 88765
No 159
>KOG0948|consensus
Probab=96.92 E-value=0.0024 Score=72.51 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=93.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
-+|-|||..++.-+ .++...++..-+-.|||+.| .|++..++... |++.--|- +|-.|=.+
T Consensus 128 F~LDpFQ~~aI~Ci---------dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ--------RVIYTSPIKALSNQKYR 190 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI---------DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ--------RVIYTSPIKALSNQKYR 190 (1041)
T ss_pred cccCchHhhhhhhh---------cCCceEEEEeecCCCcchHHHHHHHHHHHhcC--------eEEeeChhhhhcchhHH
Confidence 45888999999554 34577889899999999998 55555666554 58888884 66678888
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcccH-HH-HHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGKSK-LY-ELMT 525 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~s~-~~-~~l~ 525 (680)
|+..=+++ |.+..|+..- ......+|+|-+.++...-.-. -.....||+||.|+++..... .+ ..+.
T Consensus 191 El~~EF~D--VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETII 261 (1041)
T KOG0948|consen 191 ELLEEFKD--VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETII 261 (1041)
T ss_pred HHHHHhcc--cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEE
Confidence 88776655 3444443322 1346688999999876432211 124677999999999874322 11 1222
Q ss_pred hc-ccceEEEEeCCC
Q psy12466 526 GL-NIRKRILLSGTP 539 (680)
Q Consensus 526 ~l-~~~~rllLTgTP 539 (680)
-+ ..-+-++||||-
T Consensus 262 llP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 262 LLPDNVRFVFLSATI 276 (1041)
T ss_pred eccccceEEEEeccC
Confidence 33 333558899994
No 160
>KOG0347|consensus
Probab=96.92 E-value=0.0025 Score=70.18 Aligned_cols=139 Identities=22% Similarity=0.272 Sum_probs=85.5
Q ss_pred eEEEcCCCCChHHH-HHHHHHHHHhcCCC---------CCCccceEEEEecc-chHHHHHHHHHHHhCC--CCeeEeecC
Q psy12466 400 AILADEMGLGKTLQ-CIALIWTLLRQGPY---------GMPVIRKVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVN 466 (680)
Q Consensus 400 ~iLaDemGlGKT~~-aiali~~~~~~~~~---------~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~--~~v~~~~~~ 466 (680)
.+=|.|+|.|||+. +|-++..+...+.. ..+ -.-.|||+|+ -|..|-.+.|...++. .++..+.|.
T Consensus 222 IlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~-k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GG 300 (731)
T KOG0347|consen 222 ILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYV-KPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGG 300 (731)
T ss_pred cccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccC-cceeEEecChHHHHHHHHHHHHHhccccCeEEEEeech
Confidence 44468999999986 45555533322211 000 0126999997 6778888888877654 444444444
Q ss_pred CcchhhhhhhcCCCCEEEEeHHHHHHHHHh----hhc-cCceEEEEcCcccc--cCcccHHHHHHHhcc------cceEE
Q psy12466 467 QKNKAEDYVYSRVSPVLIISYEMLIRAYQT----IVD-TEFDLLICDEGHRL--KNGKSKLYELMTGLN------IRKRI 533 (680)
Q Consensus 467 ~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~----l~~-~~~~~vIlDEaH~~--kn~~s~~~~~l~~l~------~~~rl 533 (680)
-.............+|||+|...|...+.. +.+ ....++|+|||.++ ++.-..+.+.+..|. .+--+
T Consensus 301 LavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTl 380 (731)
T KOG0347|consen 301 LAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTL 380 (731)
T ss_pred hHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceE
Confidence 333333333334789999999988665432 222 24679999999998 444445555555553 22348
Q ss_pred EEeCCC
Q psy12466 534 LLSGTP 539 (680)
Q Consensus 534 lLTgTP 539 (680)
+.|||-
T Consensus 381 VFSATl 386 (731)
T KOG0347|consen 381 VFSATL 386 (731)
T ss_pred EEEEEe
Confidence 999996
No 161
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.90 E-value=0.0061 Score=75.12 Aligned_cols=130 Identities=26% Similarity=0.243 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-----chHHHHHHHHHHHhCCCCeeEeecCCcchh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-----SLTSNWNDEFKKWLGLTRMCPYHVNQKNKA 471 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-----sll~qW~~E~~~~~~~~~v~~~~~~~~~~~ 471 (680)
+.-.|++-++|+|||.|.=.++.... .+. .+.+.+.-|. ++..+-.+|+..-.+.. + -|.. +.
T Consensus 89 ~~VviI~GeTGSGKTTqlPq~lle~g-~g~-----~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~-V-GY~v----rf 156 (1294)
T PRK11131 89 HQVVIVAGETGSGKTTQLPKICLELG-RGV-----KGLIGHTQPRRLAARTVANRIAEELETELGGC-V-GYKV----RF 156 (1294)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC-CCC-----CCceeeCCCcHHHHHHHHHHHHHHHhhhhcce-e-ceee----cC
Confidence 45688999999999997544443321 111 1122223353 44466666666433321 1 1111 11
Q ss_pred hhhhhcCCCCEEEEeHHHHHHHHHhh-hccCceEEEEcCcc-cccCcccHHHHHHHhc----ccceEEEEeCCCC
Q psy12466 472 EDYVYSRVSPVLIISYEMLIRAYQTI-VDTEFDLLICDEGH-RLKNGKSKLYELMTGL----NIRKRILLSGTPL 540 (680)
Q Consensus 472 ~~~~~~~~~~vvI~ty~~l~~~~~~l-~~~~~~~vIlDEaH-~~kn~~s~~~~~l~~l----~~~~rllLTgTP~ 540 (680)
.+. ......|+++|...+.+.+..- .-..+++||||||| +.-|.+-... .++.+ .....+++|||.-
T Consensus 157 ~~~-~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpdlKvILmSATid 229 (1294)
T PRK11131 157 NDQ-VSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILG-YLKELLPRRPDLKVIITSATID 229 (1294)
T ss_pred ccc-cCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHH-HHHHhhhcCCCceEEEeeCCCC
Confidence 111 1235689999999998765421 12468999999999 4555443322 23333 2346799999984
No 162
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=96.89 E-value=0.0016 Score=76.58 Aligned_cols=106 Identities=11% Similarity=0.084 Sum_probs=65.8
Q ss_pred CCCeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH-hhhcC---CCc-E
Q psy12466 191 YILRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-TIVDT---EFD-L 264 (680)
Q Consensus 191 ~~~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-~l~~~---~~~-~ 264 (680)
...++|||||. .|..||.++|.++.+. .+....+.............+|+|+++.++..... .+... ..+ +
T Consensus 292 ~~~~vl~lvdR~~L~~Q~~~~f~~~~~~---~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 292 KNPKVFFVVDRRELDYQLMKEFQSLQKD---CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhhCCC---CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 35689999995 5788999999998752 11111111222222333457899999999976322 22222 223 8
Q ss_pred EEEcCCCCCCCCCCCCCccc-cCCCCCCceeccCCCCC
Q psy12466 265 LICDEKSLLKPPSGNSPGND-SGIPSLPRKSDSGIGSL 301 (680)
Q Consensus 265 vI~DEaH~lKN~~s~~~~a~-~~l~~~~r~~LTG~~~~ 301 (680)
||+|||||.--. ...+.+ ..++...++.|||+...
T Consensus 369 vIvDEaHrs~~~--~~~~~l~~~~p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 369 VIFDEAHRSQYG--ELAKNLKKALKNASFFGFTGTPIF 404 (667)
T ss_pred EEEEcCccccch--HHHHHHHhhCCCCcEEEEeCCCcc
Confidence 999999986422 223334 34666789999987643
No 163
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.88 E-value=0.0045 Score=73.27 Aligned_cols=106 Identities=25% Similarity=0.290 Sum_probs=65.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.|-|--..+|.|||+++..-+......+ +.++||+|+ .|. .+|...+.++++ +++.++.+........
T Consensus 96 ~G~Iaem~TGeGKTL~a~Lpa~~~al~G-------~~V~VvTpn~yLA~qd~e~m~~l~~~lG-Ltv~~i~gg~~~~~r~ 167 (896)
T PRK13104 96 EGNIAEMRTGEGKTLVATLPAYLNAISG-------RGVHIVTVNDYLAKRDSQWMKPIYEFLG-LTVGVIYPDMSHKEKQ 167 (896)
T ss_pred cCccccccCCCCchHHHHHHHHHHHhcC-------CCEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCHHHHH
Confidence 4667778999999998654443323233 238999998 444 446666666655 4555554443322222
Q ss_pred hhhcCCCCEEEEeHHHHH-HHHHh--------hhccCceEEEEcCcccc
Q psy12466 474 YVYSRVSPVLIISYEMLI-RAYQT--------IVDTEFDLLICDEGHRL 513 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~-~~~~~--------l~~~~~~~vIlDEaH~~ 513 (680)
..+ ..+|++.|...+. ..+.. .....+.++|+|||+.+
T Consensus 168 ~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 168 EAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred HHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 222 5789999998872 22111 11247899999999986
No 164
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.70 E-value=0.0037 Score=61.91 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=55.8
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
-.++|||||.. ++.++.++++++.... ++..++++..............+|+|+|.+.+...... +.-..++++|
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lI 148 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLV 148 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEE
Confidence 35799999965 6788999999997533 33444444332222222224678999998887664432 1113578999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||+|.+-+.
T Consensus 149 vDE~h~~~~~ 158 (203)
T cd00268 149 LDEADRMLDM 158 (203)
T ss_pred EeChHHhhcc
Confidence 9999998754
No 165
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.011 Score=65.17 Aligned_cols=72 Identities=22% Similarity=0.301 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL 455 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~ 455 (680)
-|-+|+.-|.+.+ ..+.+.-.|--.+|+|||+++.-++.... +|+||++|+ .|..|-..||+.|+
T Consensus 16 DQP~AI~~Lv~gi----~~g~~~QtLLGvTGSGKTfT~AnVI~~~~----------rPtLV~AhNKTLAaQLy~Efk~fF 81 (663)
T COG0556 16 DQPEAIAELVEGI----ENGLKHQTLLGVTGSGKTFTMANVIAKVQ----------RPTLVLAHNKTLAAQLYSEFKEFF 81 (663)
T ss_pred CcHHHHHHHHHHH----hcCceeeEEeeeccCCchhHHHHHHHHhC----------CCeEEEecchhHHHHHHHHHHHhC
Confidence 5889999888753 33445566777899999999988886542 369999997 66799999999999
Q ss_pred CCCCeeE
Q psy12466 456 GLTRMCP 462 (680)
Q Consensus 456 ~~~~v~~ 462 (680)
|...|-.
T Consensus 82 P~NaVEY 88 (663)
T COG0556 82 PENAVEY 88 (663)
T ss_pred cCcceEE
Confidence 9876544
No 166
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.55 E-value=0.013 Score=72.61 Aligned_cols=136 Identities=23% Similarity=0.146 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
+.-.||+-++|.|||.|.=.++.... .+. .+.+++.-|.-+. ......+.+-.+. .+...-|.. .+....
T Consensus 82 ~~vvii~g~TGSGKTTqlPq~lle~~-~~~-----~~~I~~tQPRRlAA~svA~RvA~elg~-~lG~~VGY~-vR~~~~- 152 (1283)
T TIGR01967 82 NQVVIIAGETGSGKTTQLPKICLELG-RGS-----HGLIGHTQPRRLAARTVAQRIAEELGT-PLGEKVGYK-VRFHDQ- 152 (1283)
T ss_pred CceEEEeCCCCCCcHHHHHHHHHHcC-CCC-----CceEecCCccHHHHHHHHHHHHHHhCC-CcceEEeeE-EcCCcc-
Confidence 46789999999999998755543321 111 1234444454332 3333334333322 111111110 011111
Q ss_pred hcCCCCEEEEeHHHHHHHHHhh-hccCceEEEEcCcc-cccCcccHHH--HHHH-hcccceEEEEeCCCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTI-VDTEFDLLICDEGH-RLKNGKSKLY--ELMT-GLNIRKRILLSGTPLQ 541 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l-~~~~~~~vIlDEaH-~~kn~~s~~~--~~l~-~l~~~~rllLTgTP~~ 541 (680)
......|.++|...+.+.+..- .-..+++||+|||| +.-+.+-... +.+. ....-..++||||.-.
T Consensus 153 ~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~ 223 (1283)
T TIGR01967 153 VSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDP 223 (1283)
T ss_pred cCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCH
Confidence 1234679999999987654321 12368999999999 4555443322 2221 1133457999999843
No 167
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.54 E-value=0.0044 Score=59.13 Aligned_cols=83 Identities=24% Similarity=0.362 Sum_probs=58.2
Q ss_pred eEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhc-ccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYV-YSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
++||+||. +++.+=.+++.+++... ++..++++......... .....+|+|+|++.+...... +.-...++||+
T Consensus 46 ~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 46 RVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred eEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhhccccccccccccceeecc
Confidence 89999994 57888999999998653 44444444332212211 235689999999999877664 11234899999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||+|.+-..
T Consensus 126 DE~h~l~~~ 134 (169)
T PF00270_consen 126 DEAHHLSDE 134 (169)
T ss_dssp ETHHHHHHT
T ss_pred Ccccccccc
Confidence 999998774
No 168
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=96.51 E-value=0.0051 Score=68.75 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=55.3
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI~ 267 (680)
.++||++|+. |..++.+.+..|.... ++..++|+..............+|+|+|.+.+..... .+.-..+++||+
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLIL 153 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEE
Confidence 4799999976 5678888888887433 4444444433222222233456899999998866543 223345788999
Q ss_pred cCCCCCCC
Q psy12466 268 DEKSLLKP 275 (680)
Q Consensus 268 DEaH~lKN 275 (680)
||||++-.
T Consensus 154 DEah~~l~ 161 (434)
T PRK11192 154 DEADRMLD 161 (434)
T ss_pred ECHHHHhC
Confidence 99999864
No 169
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.47 E-value=0.009 Score=70.70 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=66.4
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.|.|--..+|-|||++|...+......|. .+-||+|+..+ .+|...+-+|++ +++.++.+........
T Consensus 96 ~G~iaEM~TGEGKTLvA~l~a~l~al~G~-------~VhvvT~ndyLA~RD~e~m~~l~~~lG-l~v~~i~~~~~~~err 167 (913)
T PRK13103 96 EGKIAEMRTGEGKTLVGTLAVYLNALSGK-------GVHVVTVNDYLARRDANWMRPLYEFLG-LSVGIVTPFQPPEEKR 167 (913)
T ss_pred cCccccccCCCCChHHHHHHHHHHHHcCC-------CEEEEeCCHHHHHHHHHHHHHHhcccC-CEEEEECCCCCHHHHH
Confidence 56677789999999976544433333332 38999998555 445555555554 4555554443333322
Q ss_pred hhhcCCCCEEEEeHHHH-----HHHHH----hhhccCceEEEEcCcccc
Q psy12466 474 YVYSRVSPVLIISYEML-----IRAYQ----TIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l-----~~~~~----~l~~~~~~~vIlDEaH~~ 513 (680)
..+ .++|++.|...| +..+. ......+.++|+||+|.+
T Consensus 168 ~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 168 AAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred HHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 222 388999998886 32221 223467899999999987
No 170
>PRK04296 thymidine kinase; Provisional
Probab=96.44 E-value=0.023 Score=56.06 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=26.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
.++.-+||.|||..++.++..+...+. +++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~-------~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGM-------KVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCC-------eEEEEec
Confidence 466779999999999999988876653 5777755
No 171
>KOG0346|consensus
Probab=96.40 E-value=0.019 Score=61.99 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=87.0
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCC-CCCccceEEEEecc-chHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPY-GMPVIRKVLIVTPS-SLTSNWNDEFKK 453 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~-~~~~~~~~LIV~P~-sll~qW~~E~~~ 453 (680)
-|..++-.+++ +...+--.-+|.|||..- |-++..+...... .....-..+|++|+ -|..|-+..+.+
T Consensus 45 IQs~aIplaLE---------gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viek 115 (569)
T KOG0346|consen 45 IQSSAIPLALE---------GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEK 115 (569)
T ss_pred hhhcccchhhc---------CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHH
Confidence 35566655544 234444478999999873 4456555543322 11222347999997 677777777655
Q ss_pred H---hC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccCccc--HHHHHH
Q psy12466 454 W---LG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKNGKS--KLYELM 524 (680)
Q Consensus 454 ~---~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn~~s--~~~~~l 524 (680)
. |+ +.++.-+..+..............+|+++|...+.+.... .......++|+|||.-+-..+. ...+..
T Consensus 116 L~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~ 195 (569)
T KOG0346|consen 116 LVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLR 195 (569)
T ss_pred HHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHH
Confidence 4 44 3333333322222233344456789999999988765432 1123467999999998754322 122222
Q ss_pred Hhccc-ceEEEEeCCC
Q psy12466 525 TGLNI-RKRILLSGTP 539 (680)
Q Consensus 525 ~~l~~-~~rllLTgTP 539 (680)
..|.. ---++||||-
T Consensus 196 ~~LPr~~Q~~LmSATl 211 (569)
T KOG0346|consen 196 SHLPRIYQCFLMSATL 211 (569)
T ss_pred HhCCchhhheeehhhh
Confidence 22321 1237777775
No 172
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=96.40 E-value=0.014 Score=69.00 Aligned_cols=119 Identities=20% Similarity=0.192 Sum_probs=70.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHH---HHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSN---WND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~q---W~~ 449 (680)
.++-|.-|.--| ..|.|.-..+|.|||+++...+......+. .+-||+|+. |..+ |..
T Consensus 82 ~~dvQlig~l~L-----------~~G~Iaem~TGeGKTLva~lpa~l~aL~G~-------~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 82 HFDVQLIGGMVL-----------HEGKIAEMKTGEGKTLVATLPAYLNALTGK-------GVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred CCccHHHhhHHh-----------cCCchhhhhcCCCcHHHHHHHHHHHHHcCC-------CEEEEecCHHHHHHHHHHHH
Confidence 445577666443 146677899999999986544432222332 277999985 4444 555
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHH-HH--------hhhccCceEEEEcCcccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA-YQ--------TIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~-~~--------~l~~~~~~~vIlDEaH~~ 513 (680)
.+-++++ +++.+..+..........+ ..+|++.|...+.-+ .. .+....+.++|+|||..+
T Consensus 144 ~l~~~LG-lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 144 PLYEFLG-LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred HHHhhcC-CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 5555544 3444444433333222222 378999998888322 11 122456889999999876
No 173
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=96.40 E-value=0.0058 Score=68.79 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=55.8
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCCee--EEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTRMC--PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI~ 267 (680)
.++|||||+. |..+|.+++.++.....+. .+.++..............+|+|+|.+.+..... .+.-...++||+
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lVi 155 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVL 155 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEe
Confidence 3789999965 5679999999997544443 3333332222222233567899999998865443 122245889999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-..
T Consensus 156 DEah~ll~~ 164 (456)
T PRK10590 156 DEADRMLDM 164 (456)
T ss_pred ecHHHHhcc
Confidence 999998653
No 174
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.39 E-value=0.015 Score=68.01 Aligned_cols=67 Identities=27% Similarity=0.403 Sum_probs=52.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~E 450 (680)
..|-+.|+.+|.+.+. .....++--.+|+|||.++++++..+...+. ++||++|+. .+.+-.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~--------~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-------~VLv~a~sn~Avd~l~e~ 220 (637)
T TIGR00376 156 PNLNESQKEAVSFALS--------SKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-------RVLVTAPSNIAVDNLLER 220 (637)
T ss_pred CCCCHHHHHHHHHHhc--------CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-------CEEEEcCcHHHHHHHHHH
Confidence 4688999999988753 2245778889999999999999888776653 599999974 55777777
Q ss_pred HHH
Q psy12466 451 FKK 453 (680)
Q Consensus 451 ~~~ 453 (680)
+..
T Consensus 221 l~~ 223 (637)
T TIGR00376 221 LAL 223 (637)
T ss_pred HHh
Confidence 765
No 175
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=96.37 E-value=0.0056 Score=68.98 Aligned_cols=83 Identities=8% Similarity=0.105 Sum_probs=56.5
Q ss_pred eEEEEECcc-cHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 194 RVLIVTPSS-LTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 194 ~~LIV~P~s-l~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
++||+||+- |..||.++++++.. ..++..++|+..............+|+|+|.+.+...... +.-..+++||+
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lVi 153 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVL 153 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEE
Confidence 689999965 56799999998862 3455556555433222222235678999999998765542 22235789999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 154 DEad~~l~~ 162 (460)
T PRK11776 154 DEADRMLDM 162 (460)
T ss_pred ECHHHHhCc
Confidence 999988653
No 176
>KOG1802|consensus
Probab=96.33 E-value=0.0099 Score=66.91 Aligned_cols=68 Identities=24% Similarity=0.383 Sum_probs=55.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~E 450 (680)
.+|..-|..||...+++ .=.||--.+|+|||+++.+++..+...+ .+|+||++|+. .+.|-.+.
T Consensus 409 pkLN~SQ~~AV~~VL~r---------plsLIQGPPGTGKTvtsa~IVyhl~~~~------~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQR---------PLSLIQGPPGTGKTVTSATIVYHLARQH------AGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhhchHHHHHHHHHHcC---------CceeeecCCCCCceehhHHHHHHHHHhc------CCceEEEcccchhHHHHHHH
Confidence 46888999999998765 4468889999999999999988887774 35799999975 55888887
Q ss_pred HHHH
Q psy12466 451 FKKW 454 (680)
Q Consensus 451 ~~~~ 454 (680)
|.+-
T Consensus 474 Ih~t 477 (935)
T KOG1802|consen 474 IHKT 477 (935)
T ss_pred HHhc
Confidence 7763
No 177
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.27 E-value=0.0079 Score=67.01 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=56.2
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI~ 267 (680)
.++||+||+. |..+|.+++.++... .++..++++..............+|+|+|.+.+..... .+.-..+.++|+
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 4789999965 467899998888743 44555555443222222223456899999998866543 223345889999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 164 DEad~l~~~ 172 (423)
T PRK04837 164 DEADRMFDL 172 (423)
T ss_pred ecHHHHhhc
Confidence 999998653
No 178
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=96.25 E-value=0.019 Score=68.10 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=78.2
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hH---HHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LT---SNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.|-|.-..+|-|||+++...+......+. .+.||+|+. |. ..|...+.+|++. ++.+..+........
T Consensus 96 ~G~IaEm~TGEGKTL~a~lp~~l~al~g~-------~VhIvT~ndyLA~RD~e~m~~l~~~lGl-sv~~i~~~~~~~~r~ 167 (908)
T PRK13107 96 SNRIAEMRTGEGKTLTATLPAYLNALTGK-------GVHVITVNDYLARRDAENNRPLFEFLGL-TVGINVAGLGQQEKK 167 (908)
T ss_pred CCccccccCCCCchHHHHHHHHHHHhcCC-------CEEEEeCCHHHHHHHHHHHHHHHHhcCC-eEEEecCCCCHHHHH
Confidence 46677789999999986544433333332 389999984 43 6788888888764 444333322221111
Q ss_pred hhhcCCCCEEEEeHHHHHHHH---------HhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAY---------QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~---------~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~ 544 (680)
..-.++|+..|-..+.-++ +......+.++|+||+..+--. .++.-+++||.+ ...
T Consensus 168 --~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD-----------EArtPLIISg~~-~~~- 232 (908)
T PRK13107 168 --AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID-----------EARTPLIISGAA-EDS- 232 (908)
T ss_pred --hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc-----------cCCCceeecCCC-ccc-
Confidence 1124688888876662211 1223367889999999876332 233457888854 333
Q ss_pred HHHHHHHh
Q psy12466 545 QEFFYLND 552 (680)
Q Consensus 545 ~el~sll~ 552 (680)
.++|..+.
T Consensus 233 ~~~y~~~~ 240 (908)
T PRK13107 233 SELYIKIN 240 (908)
T ss_pred hHHHHHHH
Confidence 45555443
No 179
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.25 E-value=0.042 Score=66.16 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=43.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHH-HHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNW-NDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW-~~E 450 (680)
+.|+-|.+-...+.+.+ ..+...++-..+|+|||+.-+.-+.... . ..+++|.||+..+ .|- .++
T Consensus 245 e~R~~Q~~ma~~V~~~l-----~~~~~~~~eA~tGtGKT~ayllp~l~~~-~-------~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 245 EERPKQESFAKLVGEDF-----HDGPASFIEAQTGIGKTYGYLLPLLAQS-D-------QRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred ccCHHHHHHHHHHHHHH-----hCCCcEEEECCCCCcHHHHHHHHHHHhc-C-------CCcEEEEeCcHHHHHHHHHHH
Confidence 57888988777776653 2335566778999999987554322211 1 1369999998544 554 344
Q ss_pred HHH
Q psy12466 451 FKK 453 (680)
Q Consensus 451 ~~~ 453 (680)
+..
T Consensus 312 i~~ 314 (820)
T PRK07246 312 VKA 314 (820)
T ss_pred HHH
Confidence 443
No 180
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.21 E-value=0.027 Score=65.25 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=80.4
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~~ 449 (680)
.++-|.-|...|+ .|.|.-..+|-|||++|...+......|. .+.||+|+..+ .+|..
T Consensus 79 ~ydvQlig~l~Ll-----------~G~VaEM~TGEGKTLvA~l~a~l~AL~G~-------~VhvvT~NdyLA~RDae~m~ 140 (764)
T PRK12326 79 PFDVQLLGALRLL-----------AGDVIEMATGEGKTLAGAIAAAGYALQGR-------RVHVITVNDYLARRDAEWMG 140 (764)
T ss_pred cchHHHHHHHHHh-----------CCCcccccCCCCHHHHHHHHHHHHHHcCC-------CeEEEcCCHHHHHHHHHHHH
Confidence 4456877776653 35677788899999998766655555443 48999998655 55666
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHH-----HHHH----HhhhccCceEEEEcCcccccCcccHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRAY----QTIVDTEFDLLICDEGHRLKNGKSKL 520 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l-----~~~~----~~l~~~~~~~vIlDEaH~~kn~~s~~ 520 (680)
.+-+|++ +++.+..+..........+ .++|+-+|-..+ +..+ +......++++|+||+..+--.
T Consensus 141 ~ly~~LG-Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID---- 213 (764)
T PRK12326 141 PLYEALG-LTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD---- 213 (764)
T ss_pred HHHHhcC-CEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec----
Confidence 6666655 3455444433333222222 356665554433 2221 2233457899999999865211
Q ss_pred HHHHHhcccceEEEEeCCC
Q psy12466 521 YELMTGLNIRKRILLSGTP 539 (680)
Q Consensus 521 ~~~l~~l~~~~rllLTgTP 539 (680)
.++.-+.+||.+
T Consensus 214 -------eArtPLiISg~~ 225 (764)
T PRK12326 214 -------EALVPLVLAGST 225 (764)
T ss_pred -------cccCceeeeCCC
Confidence 234457777755
No 181
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=96.20 E-value=0.013 Score=70.58 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=61.9
Q ss_pred CeEEEEECcccHHH-HHHHHHHHh---C-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHH-------HhhhcC
Q psy12466 193 LRVLIVTPSSLTSN-WNDEFKKWL---G-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY-------QTIVDT 260 (680)
Q Consensus 193 ~~~LIV~P~sl~~n-W~~E~~k~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~-------~~l~~~ 260 (680)
.++|+|=|+..+.| =.++|++|. | ...+..|.|+..............+|++|||+|+-... ..+. .
T Consensus 116 a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~-~ 194 (851)
T COG1205 116 ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLL-R 194 (851)
T ss_pred ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHH-h
Confidence 48899999877655 556788886 3 23455666655444443344567889999999995521 1222 2
Q ss_pred CCcEEEEcCCCCCCCCC-CCCCccccCCCCC
Q psy12466 261 EFDLLICDEKSLLKPPS-GNSPGNDSGIPSL 290 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN~~-s~~~~a~~~l~~~ 290 (680)
.+.+||+||+|.-+-.- |..+-.+++|.-.
T Consensus 195 ~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~ 225 (851)
T COG1205 195 NLKYLVVDELHTYRGVQGSEVALLLRRLLRR 225 (851)
T ss_pred cCcEEEEecceeccccchhHHHHHHHHHHHH
Confidence 38899999999877543 2334444444433
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.19 E-value=0.043 Score=55.28 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=75.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
-.+||-|.+-+..|.+ ...+.+.++-.-||-|||...+=+++.....+. +=+-+|||++++.|-.+-+
T Consensus 22 iliR~~Q~~ia~~mi~------~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~------~LvrviVpk~Ll~q~~~~L 89 (229)
T PF12340_consen 22 ILIRPVQVEIAREMIS------PPSGKNSVMQLNMGEGKTSVIVPMLALALADGS------RLVRVIVPKALLEQMRQML 89 (229)
T ss_pred ceeeHHHHHHHHHHhC------CCCCCCeEeeecccCCccchHHHHHHHHHcCCC------cEEEEEcCHHHHHHHHHHH
Confidence 3589999999988864 245678899999999999988888887777664 2378999999999998888
Q ss_pred HHHhCCC---CeeEeecCCcchhh-----hh-----hhcCCCCEEEEeHHHHHH
Q psy12466 452 KKWLGLT---RMCPYHVNQKNKAE-----DY-----VYSRVSPVLIISYEMLIR 492 (680)
Q Consensus 452 ~~~~~~~---~v~~~~~~~~~~~~-----~~-----~~~~~~~vvI~ty~~l~~ 492 (680)
..-++.. ++..+..+...... .+ .-.....|++++.+.+..
T Consensus 90 ~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 90 RSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred HHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 7766431 23333332222111 11 112356799999887643
No 183
>KOG0340|consensus
Probab=96.14 E-value=0.023 Score=59.76 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=92.4
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
-|-|...+-.+++ |+.||=+.-+|.|||.. ++-.+..+ ...|++. =.||+.|+ -+..|-.+.|.
T Consensus 31 TpiQ~~cIpkILe---------Grdcig~AkTGsGKT~AFaLPil~rL-sedP~gi----FalvlTPTrELA~QiaEQF~ 96 (442)
T KOG0340|consen 31 TPIQQACIPKILE---------GRDCIGCAKTGSGKTAAFALPILNRL-SEDPYGI----FALVLTPTRELALQIAEQFI 96 (442)
T ss_pred CchHhhhhHHHhc---------ccccccccccCCCcchhhhHHHHHhh-ccCCCcc----eEEEecchHHHHHHHHHHHH
Confidence 3567777766653 57788899999999975 33333333 3334443 26999998 45566666655
Q ss_pred HHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh------hhccCceEEEEcCcccccCcccH-HHH-
Q psy12466 453 KWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT------IVDTEFDLLICDEGHRLKNGKSK-LYE- 522 (680)
Q Consensus 453 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~------l~~~~~~~vIlDEaH~~kn~~s~-~~~- 522 (680)
-.-. ..++.++.|....-..........++++++.+.+...... ..-.+..++|+|||.++-+..-. ...
T Consensus 97 alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~ 176 (442)
T KOG0340|consen 97 ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEG 176 (442)
T ss_pred HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhh
Confidence 4322 2455556555444444455556778999999888654322 12235678999999998664321 112
Q ss_pred HHHhcccc-eEEEEeCCC
Q psy12466 523 LMTGLNIR-KRILLSGTP 539 (680)
Q Consensus 523 ~l~~l~~~-~rllLTgTP 539 (680)
....+..+ --+++|||-
T Consensus 177 i~e~lP~~RQtLlfSATi 194 (442)
T KOG0340|consen 177 IEECLPKPRQTLLFSATI 194 (442)
T ss_pred hhccCCCccceEEEEeeh
Confidence 22233333 459999984
No 184
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.14 E-value=0.01 Score=69.35 Aligned_cols=84 Identities=10% Similarity=0.124 Sum_probs=55.7
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
.++||+||+. |..||.+++.+|.. ..++..++++..............+|+|+|-+.+..+... +.-....+||
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLV 154 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 4789999965 56899999998863 3455555555432222222234578999999988665432 2223577899
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||.+-+.
T Consensus 155 lDEAd~ml~~ 164 (629)
T PRK11634 155 LDEADEMLRM 164 (629)
T ss_pred eccHHHHhhc
Confidence 9999987544
No 185
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.09 E-value=0.063 Score=65.70 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=40.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SN 446 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~q 446 (680)
..||-|.+-.+.+.+.+. .+..+++-..+|+|||+.-+.-+....... .++++|-+++..+ .|
T Consensus 257 e~R~~Q~~m~~~v~~~l~-----~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~------~~~vvIsT~T~~LQ~Q 320 (928)
T PRK08074 257 EKREGQQEMMKEVYTALR-----DSEHALIEAGTGTGKSLAYLLPAAYFAKKK------EEPVVISTYTIQLQQQ 320 (928)
T ss_pred cCCHHHHHHHHHHHHHHh-----cCCCEEEECCCCCchhHHHHHHHHHHhhcc------CCeEEEEcCCHHHHHH
Confidence 678889887777766532 335566778999999997654443333221 1357777776443 45
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.94 E-value=0.034 Score=64.29 Aligned_cols=145 Identities=16% Similarity=0.220 Sum_probs=84.1
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKKW 454 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~~ 454 (680)
+.|+.++...+. ..-.+|.-.+|+|||.++..++..+....+... ..++++++|+.-. ....+-+...
T Consensus 148 ~~Qk~A~~~al~---------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~--~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALK---------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQG--KLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhh---------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccC--CCcEEEECCcHHHHHHHHHHHHhh
Confidence 689999877754 367899999999999999888887766543111 1258999998544 4444434332
Q ss_pred hCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHH--------HHHhhhccCceEEEEcCcccccCcccHHHHHHHh
Q psy12466 455 LGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIR--------AYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG 526 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~--------~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~ 526 (680)
...+... . .... ...+-..|...+.. ....-....+|+||||||-.+- .....+.+..
T Consensus 217 ~~~l~~~-----~-~~~~------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~a 282 (586)
T TIGR01447 217 VKNLAAA-----E-ALIA------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKLLKA 282 (586)
T ss_pred hcccccc-----h-hhhh------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHHHHh
Confidence 2111000 0 0000 00000111111100 0011112368999999999883 3455666777
Q ss_pred cccceEEEEeCCCCCCCHH
Q psy12466 527 LNIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 527 l~~~~rllLTgTP~~n~~~ 545 (680)
+....|++|.|=|.|--+.
T Consensus 283 l~~~~rlIlvGD~~QLpsV 301 (586)
T TIGR01447 283 LPPNTKLILLGDKNQLPSV 301 (586)
T ss_pred cCCCCEEEEECChhhCCCC
Confidence 7888899999998765433
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.92 E-value=0.11 Score=47.22 Aligned_cols=108 Identities=19% Similarity=0.141 Sum_probs=58.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+...++.-++|.|||..+-.++..+...+ .+++++........+.........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~------------------- 71 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPG-------APFLYLNASDLLEGLVVAELFGHF------------------- 71 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCC-------CCeEEEehhhhhhhhHHHHHhhhh-------------------
Confidence 456788899999999988877776665322 124444443333333222111100
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc-ccHHHHHHHhcc------cceEEEEeCCCCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG-KSKLYELMTGLN------IRKRILLSGTPLQN 542 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~-~s~~~~~l~~l~------~~~rllLTgTP~~n 542 (680)
. ..............++|+||++.+... .......+..+. ...++++++++...
T Consensus 72 -----------~--~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 72 -----------L--VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred -----------h--HhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 0 001111122345789999999987222 223334444442 45678888887664
No 188
>PRK09401 reverse gyrase; Reviewed
Probab=95.88 E-value=0.016 Score=71.97 Aligned_cols=83 Identities=13% Similarity=0.219 Sum_probs=58.7
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCe--eEEeecCCc--c-hhh---hcccCCCCEEEEehhHHHHHHHhhhcCCCc
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRM--CPYHVNQKN--K-AED---YVYSRVSPVLIISYEMLIRAYQTIVDTEFD 263 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~--~~~~~~~~~--~-~~~---~~~~~~~~V~itsYe~l~~~~~~l~~~~~~ 263 (680)
.++|||||+.. +.||.++|+++.....+ ....+++.. . ... ......++|+|+|.+.+....+.+....++
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~ 203 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFD 203 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccC
Confidence 57999999655 67999999999854333 333333321 1 111 112345799999999998887777667799
Q ss_pred EEEEcCCCCCCC
Q psy12466 264 LLICDEKSLLKP 275 (680)
Q Consensus 264 ~vI~DEaH~lKN 275 (680)
++|+||||++-.
T Consensus 204 ~lVvDEaD~~L~ 215 (1176)
T PRK09401 204 FVFVDDVDAVLK 215 (1176)
T ss_pred EEEEEChHHhhh
Confidence 999999998753
No 189
>KOG0351|consensus
Probab=95.86 E-value=0.018 Score=69.18 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=105.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
...||-|.++|.-.+ .+.-+++-..+|-||++.-- +-.+... +-+|||-|. +|+.--...
T Consensus 263 ~~FR~~Q~eaI~~~l---------~Gkd~fvlmpTG~GKSLCYQ--lPA~l~~--------gitvVISPL~SLm~DQv~~ 323 (941)
T KOG0351|consen 263 KGFRPNQLEAINATL---------SGKDCFVLMPTGGGKSLCYQ--LPALLLG--------GVTVVISPLISLMQDQVTH 323 (941)
T ss_pred ccCChhHHHHHHHHH---------cCCceEEEeecCCceeeEee--ccccccC--------CceEEeccHHHHHHHHHHh
Confidence 558999999998442 35778999999999997531 0001111 238999996 888655555
Q ss_pred HHHHhCCCCeeEeecCCcchhh----hhhhcC--CCCEEEEeHHHHHHHHHh---hhc----cCceEEEEcCcccccCc-
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAE----DYVYSR--VSPVLIISYEMLIRAYQT---IVD----TEFDLLICDEGHRLKNG- 516 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~----~~~~~~--~~~vvI~ty~~l~~~~~~---l~~----~~~~~vIlDEaH~~kn~- 516 (680)
+.. ..+....+++....... .....+ ...++-+|.+++...... +.. ....++|+||||....-
T Consensus 324 L~~--~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 324 LSK--KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred hhh--cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 522 23444455555444221 122223 567888999988653322 111 22689999999987432
Q ss_pred --ccHHHHHHHhc----ccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCC
Q psy12466 517 --KSKLYELMTGL----NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLG 560 (680)
Q Consensus 517 --~s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~ 560 (680)
-..-|+.+..+ ...-.++||||--..--.|+...|++-+|..+.
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK 451 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec
Confidence 22334444333 344679999999888888898888887777643
No 190
>PTZ00110 helicase; Provisional
Probab=95.84 E-value=0.013 Score=67.44 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=55.5
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCC--eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
..+|||||+. |..++.+++.++..... ....+++..............+|+|+|-+.+...... +.-...++||+
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 4689999965 56799999999975433 3444444332222222234578999999988655432 11234789999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 284 DEAd~mld~ 292 (545)
T PTZ00110 284 DEADRMLDM 292 (545)
T ss_pred ehHHhhhhc
Confidence 999998764
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.82 E-value=0.079 Score=62.96 Aligned_cols=135 Identities=22% Similarity=0.195 Sum_probs=82.9
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDE 450 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E 450 (680)
...|.+-|++++..+.. .+-.+|.-..|+|||..+-+++..+...++ ..++++++|+........|
T Consensus 321 ~~~l~~~Q~~Ai~~~~~---------~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-----~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ---------HKVVILTGGPGTGKTTITRAIIELAEELGG-----LLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHHHh---------CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-----CceEEEEeCchHHHHHHHH
Confidence 34588999999987643 356899999999999988888777766542 1358889998766554443
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIR 530 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~ 530 (680)
. ++. ................ ... ..-.....++||+|||+.+. .....+.+..+...
T Consensus 387 ~---~g~---------~a~Tih~lL~~~~~~~-------~~~--~~~~~~~~~llIvDEaSMvd--~~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 387 V---TGL---------TASTIHRLLGYGPDTF-------RHN--HLEDPIDCDLLIVDESSMMD--TWLALSLLAALPDH 443 (720)
T ss_pred h---cCC---------ccccHHHHhhccCCcc-------chh--hhhccccCCEEEEeccccCC--HHHHHHHHHhCCCC
Confidence 2 111 0000000000000000 000 00012457899999999983 33455566667778
Q ss_pred eEEEEeCCCCCC
Q psy12466 531 KRILLSGTPLQN 542 (680)
Q Consensus 531 ~rllLTgTP~~n 542 (680)
.+++|-|=|-|-
T Consensus 444 ~rlilvGD~~QL 455 (720)
T TIGR01448 444 ARLLLVGDTDQL 455 (720)
T ss_pred CEEEEECccccc
Confidence 899999988665
No 192
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.76 E-value=0.016 Score=67.08 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=55.0
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCC--eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh---hhcCCCcEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~---l~~~~~~~vI 266 (680)
.++|||||+- |..++.+++.+|..... +..++++..............+|+|+|-+.+...... +.-...++||
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lV 164 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICV 164 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeE
Confidence 4799999965 56799999999975443 4444444332222222234568999999988665432 2223467899
Q ss_pred EcCCCCCCC
Q psy12466 267 CDEKSLLKP 275 (680)
Q Consensus 267 ~DEaH~lKN 275 (680)
+||||++-+
T Consensus 165 iDEAh~lld 173 (572)
T PRK04537 165 LDEADRMFD 173 (572)
T ss_pred ecCHHHHhh
Confidence 999998854
No 193
>PRK02362 ski2-like helicase; Provisional
Probab=95.75 E-value=0.026 Score=67.50 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=55.5
Q ss_pred CeEEEEEC-cccHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhc--CCCcEEEEc
Q psy12466 193 LRVLIVTP-SSLTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P-~sl~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~--~~~~~vI~D 268 (680)
.++|+|+| .+|..++.++|.++.+ ..++..+.|+..... .+....+|+|+|+|.+......-.. ...++||+|
T Consensus 68 ~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 68 GKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred CcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 47899999 5577899999998753 345666666543222 1224578999999988654432111 247999999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|+|.|-++
T Consensus 145 E~H~l~d~ 152 (737)
T PRK02362 145 EVHLIDSA 152 (737)
T ss_pred CccccCCC
Confidence 99999764
No 194
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=95.70 E-value=0.049 Score=50.85 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=43.9
Q ss_pred CeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH-hhhcCCCcEEEEcCCC
Q psy12466 193 LRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEKS 271 (680)
Q Consensus 193 ~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-~l~~~~~~~vI~DEaH 271 (680)
.|+||+.|+-++. +|+.+-+.... +.+....... .......|-+++|.++-.... -....+|++|||||+|
T Consensus 34 ~rvLvL~PTRvva---~em~~aL~~~~--~~~~t~~~~~---~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH 105 (148)
T PF07652_consen 34 LRVLVLAPTRVVA---EEMYEALKGLP--VRFHTNARMR---THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECH 105 (148)
T ss_dssp --EEEEESSHHHH---HHHHHHTTTSS--EEEESTTSS-------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT
T ss_pred CeEEEecccHHHH---HHHHHHHhcCC--cccCceeeec---cccCCCcccccccHHHHHHhcCcccccCccEEEEeccc
Confidence 4899999998874 68888875443 2222221111 223456688999998865433 2333679999999999
Q ss_pred CC
Q psy12466 272 LL 273 (680)
Q Consensus 272 ~l 273 (680)
..
T Consensus 106 ~~ 107 (148)
T PF07652_consen 106 FT 107 (148)
T ss_dssp --
T ss_pred cC
Confidence 84
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.69 E-value=0.056 Score=48.71 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=63.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH-HhCCCCeeEeecCCcchhhhhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK-WLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~-~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
...+|.-.+|+|||..+..++..+.... ..++++.+......+...... ...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 55 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVG-------------------- 55 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhh--------------------
Confidence 5678889999999999998887766553 126777776555444333220 000
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHH---------HHhcccceEEEEeCCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYEL---------MTGLNIRKRILLSGTP 539 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~---------l~~l~~~~rllLTgTP 539 (680)
...........+............+++|+||++.+.......... .........++++..+
T Consensus 56 --~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 56 --GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred --ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 000111122222333333334447999999999986655443322 1222445556666664
No 196
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.52 E-value=0.027 Score=63.78 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=55.0
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCC--CCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGL--TRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
.++|||+|+. |..++.++++.+... .++..++++...... ........+|+|+|.+++...... +.-...++||
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 4789999965 567899988887643 344555554332221 222234578999999998654331 1123468899
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||+|++.+.
T Consensus 243 iDEah~l~~~ 252 (475)
T PRK01297 243 LDEADRMLDM 252 (475)
T ss_pred echHHHHHhc
Confidence 9999998653
No 197
>KOG0334|consensus
Probab=95.51 E-value=0.039 Score=65.43 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=94.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.+.+|-|.+|+=.+ ..++-+|--..+|.|||+.-+. .+.+...+.+......--.||+||+ .+..|-.+
T Consensus 386 ~k~~~IQ~qAiP~I---------msGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r 456 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAI---------MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHR 456 (997)
T ss_pred CCCcchhhhhcchh---------ccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHH
Confidence 45667787776444 3467788889999999987533 3334333332211111126999997 66666666
Q ss_pred HHHHHh---CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh----hhc-cCceEEEEcCccccc--CcccH
Q psy12466 450 EFKKWL---GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT----IVD-TEFDLLICDEGHRLK--NGKSK 519 (680)
Q Consensus 450 E~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~----l~~-~~~~~vIlDEaH~~k--n~~s~ 519 (680)
++.+|+ +..-+++|.+............+ ..|+|+|...+...... +.+ .+..+||+|||.++- ...-+
T Consensus 457 ~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq 535 (997)
T KOG0334|consen 457 EVRKFLKLLGIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQ 535 (997)
T ss_pred HHHHHHhhcCceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcc
Confidence 666655 33344555555544443333333 88999998876543322 212 356799999999973 33455
Q ss_pred HHHHHHhcccce-EEEEeCCCC
Q psy12466 520 LYELMTGLNIRK-RILLSGTPL 540 (680)
Q Consensus 520 ~~~~l~~l~~~~-rllLTgTP~ 540 (680)
.++.+..+...+ -++.|||-.
T Consensus 536 ~~~Ii~nlrpdrQtvlfSatfp 557 (997)
T KOG0334|consen 536 ITRILQNLRPDRQTVLFSATFP 557 (997)
T ss_pred cchHHhhcchhhhhhhhhhhhh
Confidence 555666664433 356666643
No 198
>KOG0336|consensus
Probab=95.49 E-value=0.069 Score=57.14 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=90.4
Q ss_pred CCCceEEEcCCCCChHHHHHH--HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh--CCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIA--LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL--GLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aia--li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~--~~~~v~~~~~~~~~~ 470 (680)
.+.-+|-...+|.|||+.-+. +++........+.-..-.+||+.|. -|..|-.-|..++- +...+++|.+..+..
T Consensus 256 QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e 335 (629)
T KOG0336|consen 256 QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE 335 (629)
T ss_pred cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh
Confidence 345678888999999986543 2221111111111112248999997 55577777776654 445667776665543
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccC--cccHHHHHHHhcccceEEEEeCCCCCCCHHH
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKN--GKSKLYELMTGLNIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn--~~s~~~~~l~~l~~~~rllLTgTP~~n~~~e 546 (680)
.- ....+..+++|++...|.+..- .+.-....++|+|||.++-. ..-+..+.+..++..+-.+||..-....+..
T Consensus 336 qi-e~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~Vrr 414 (629)
T KOG0336|consen 336 QI-EDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRR 414 (629)
T ss_pred HH-HHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHH
Confidence 32 2334578899999988865421 12223578999999999844 4566677777777666655554444443333
No 199
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.46 E-value=0.29 Score=57.51 Aligned_cols=146 Identities=14% Similarity=0.084 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLG 456 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~ 456 (680)
.|...++.|.+.+.. ..-.+..||.-..|+|||..+..|+..+..........| -.|.. ..++.. ..
T Consensus 20 GQe~Vv~~L~~aL~~--gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC----G~C~s------Cr~I~~-G~ 86 (830)
T PRK07003 20 GQEHVVRALTHALDG--GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC----GVCRA------CREIDE-GR 86 (830)
T ss_pred CcHHHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC----cccHH------HHHHhc-CC
Confidence 466666665543211 111234478899999999999999988764322111001 12222 111111 00
Q ss_pred CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh----hccCceEEEEcCcccccCcc-cHHHHHHHhcccce
Q psy12466 457 LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDLLICDEGHRLKNGK-SKLYELMTGLNIRK 531 (680)
Q Consensus 457 ~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l----~~~~~~~vIlDEaH~~kn~~-s~~~~~l~~l~~~~ 531 (680)
...++.+...... +.+.++..++.. ...+|.++||||+|.+.+.. +.+.+.|..-....
T Consensus 87 h~DviEIDAas~r----------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 87 FVDYVEMDAASNR----------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred CceEEEecccccc----------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence 1112222211110 112222222221 23468999999999995432 22334444445567
Q ss_pred EEEEeCCCCCCCHHHHHHHH
Q psy12466 532 RILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 532 rllLTgTP~~n~~~el~sll 551 (680)
+++|+.|-.+.=+.-+.|-+
T Consensus 151 ~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred EEEEEECChhhccchhhhhe
Confidence 78888886555444444443
No 200
>KOG0352|consensus
Probab=95.39 E-value=0.11 Score=55.86 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=93.7
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
+-|..|+.-...+ .....++..+|.||++.--. -.+...+ -++||-|. .|+..-.+.+.+.
T Consensus 23 ~LQE~A~~c~VK~--------k~DVyVsMPTGaGKSLCyQL--PaL~~~g--------ITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 23 RLQEQAINCIVKR--------KCDVYVSMPTGAGKSLCYQL--PALVHGG--------ITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred hHHHHHHHHHHhc--------cCcEEEeccCCCchhhhhhc--hHHHhCC--------eEEEehHHHHHHHHHHHHHHhc
Confidence 3588999877653 46689999999999974211 1112222 27888886 6666666666553
Q ss_pred hCCCCeeEeecCCcc----hhh---hhh-hcCCCCEEEEeHHHHHH-----HHHhhhc-cCceEEEEcCcccccC-----
Q psy12466 455 LGLTRMCPYHVNQKN----KAE---DYV-YSRVSPVLIISYEMLIR-----AYQTIVD-TEFDLLICDEGHRLKN----- 515 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~----~~~---~~~-~~~~~~vvI~ty~~l~~-----~~~~l~~-~~~~~vIlDEaH~~kn----- 515 (680)
+|.+-...++- +.+ +.. ......++-+|.++... ....|.+ ....++++||||....
T Consensus 85 ----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDF 160 (641)
T KOG0352|consen 85 ----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDF 160 (641)
T ss_pred ----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhcccc
Confidence 33332222221 111 111 11233455555555432 2223332 3578999999998732
Q ss_pred -cccHHHHHHHhc-ccceEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy12466 516 -GKSKLYELMTGL-NIRKRILLSGTPLQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 516 -~~s~~~~~l~~l-~~~~rllLTgTP~~n~~~el~sll~fl~p~~ 558 (680)
++....-+++.. ..-.-++||||--..--+|+|..|.+-.|-.
T Consensus 161 RPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVA 205 (641)
T KOG0352|consen 161 RPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVA 205 (641)
T ss_pred CcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHH
Confidence 233333334332 3334589999998888889999988876653
No 201
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.36 E-value=0.081 Score=62.73 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=27.5
Q ss_pred CCCEEEEeHHHHHHHHHh-----hhccCceEEEEcCccccc
Q psy12466 479 VSPVLIISYEMLIRAYQT-----IVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~-----l~~~~~~~vIlDEaH~~k 514 (680)
..+|+||++..+..+... +.....+++||||||++-
T Consensus 219 ~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~ 259 (697)
T PRK11747 219 EADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLP 259 (697)
T ss_pred hCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchH
Confidence 457999999999877642 222347889999999994
No 202
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.35 E-value=0.028 Score=63.51 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=52.9
Q ss_pred eEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHHH---HHhh-hcCCCcE
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRA---YQTI-VDTEFDL 264 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~~---~~~l-~~~~~~~ 264 (680)
.+|||+|+ +|+.++.+.+.... .....+.+....... ........+|+++|.|.+... ...+ ....+++
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~g--i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKASG--IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 58999996 45677888887643 344444433322211 122345578999999987542 2334 4567999
Q ss_pred EEEcCCCCCCCCC
Q psy12466 265 LICDEKSLLKPPS 277 (680)
Q Consensus 265 vI~DEaH~lKN~~ 277 (680)
||+||||++-.+.
T Consensus 131 iViDEaH~i~~~g 143 (470)
T TIGR00614 131 IAVDEAHCISQWG 143 (470)
T ss_pred EEEeCCcccCccc
Confidence 9999999997543
No 203
>KOG0333|consensus
Probab=95.30 E-value=0.056 Score=59.63 Aligned_cols=130 Identities=21% Similarity=0.232 Sum_probs=82.6
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHH-HHHHHHHHHhcCCC----CCCccceEEEEecc-chHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQ-CIALIWTLLRQGPY----GMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~-aiali~~~~~~~~~----~~~~~~~~LIV~P~-sll~qW~ 448 (680)
-|-|+.++--+++ .+..|...|+|.|||.. .|-++..+....+. ........+|++|+ -|..|-.
T Consensus 269 tpIqR~aipl~lQ---------~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIe 339 (673)
T KOG0333|consen 269 TPIQRQAIPLGLQ---------NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIE 339 (673)
T ss_pred chHHHhhccchhc---------cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHH
Confidence 3567777765544 47788899999999953 33333333322211 11112347999998 5667888
Q ss_pred HHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccc
Q psy12466 449 DEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 449 ~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~ 513 (680)
+|-.+|.-. .+++.+-|..+.....+.....+.++|.|...+..... .|...+..+||+|||.++
T Consensus 340 eEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrm 408 (673)
T KOG0333|consen 340 EETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRM 408 (673)
T ss_pred HHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhh
Confidence 888887633 33333333333344445556678999999998866443 344457899999999987
No 204
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.25 E-value=0.083 Score=61.35 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=82.4
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKK 453 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~ 453 (680)
-+.|+.|+.-.+. .+-++|.-.+|+|||.++..++..+....... ..++++++|+.-. ..-.+.+..
T Consensus 154 ~d~Qk~Av~~a~~---------~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~---~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVALT---------RRISVISGGPGTGKTTTVAKLLAALIQLADGE---RCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHhc---------CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCC---CcEEEEECCcHHHHHHHHHHHHh
Confidence 3689999976543 36789999999999999988888776532110 1358889998544 333333322
Q ss_pred HhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHH--------HHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 454 WLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIR--------AYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 454 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~--------~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
-....... . .... ....-..|...+.. ..+.-....+|+||+|||..+ ......+.+.
T Consensus 222 ~~~~~~~~-----~--~~~~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv--d~~lm~~ll~ 287 (615)
T PRK10875 222 ALRQLPLT-----D--EQKK-----RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV--DLPMMARLID 287 (615)
T ss_pred hhhccccc-----h--hhhh-----cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc--cHHHHHHHHH
Confidence 11111000 0 0000 00000011111100 001112235799999999988 3455666777
Q ss_pred hcccceEEEEeCCCCCCCH
Q psy12466 526 GLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 526 ~l~~~~rllLTgTP~~n~~ 544 (680)
.+....|++|-|=|-|--.
T Consensus 288 al~~~~rlIlvGD~~QL~s 306 (615)
T PRK10875 288 ALPPHARVIFLGDRDQLAS 306 (615)
T ss_pred hcccCCEEEEecchhhcCC
Confidence 8888899999999877533
No 205
>KOG1805|consensus
Probab=95.24 E-value=0.14 Score=60.36 Aligned_cols=147 Identities=22% Similarity=0.176 Sum_probs=85.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|..-|++|+...+.. ... .++--=+|+|||.+..+++..+...+. ++|+.+=+ +.+.|-.-.
T Consensus 668 ~~LN~dQr~A~~k~L~a-------edy-~LI~GMPGTGKTTtI~~LIkiL~~~gk-------kVLLtsyThsAVDNILiK 732 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA-------EDY-ALILGMPGTGKTTTISLLIKILVALGK-------KVLLTSYTHSAVDNILIK 732 (1100)
T ss_pred hhcCHHHHHHHHHHHhc-------cch-heeecCCCCCchhhHHHHHHHHHHcCC-------eEEEEehhhHHHHHHHHH
Confidence 37889999999877653 122 344445899999999999999888774 68888876 556776655
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcC-CCCEEEEeHHHHHHHHHh---------------hhccCceEEEEcCccccc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSR-VSPVLIISYEMLIRAYQT---------------IVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~vvI~ty~~l~~~~~~---------------l~~~~~~~vIlDEaH~~k 514 (680)
+..+-- .+...|....-........ ...--+.+|+.+.+.++. +....||++|+|||-.+-
T Consensus 733 L~~~~i---~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 733 LKGFGI---YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred HhccCc---ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEccccccc
Confidence 555421 1222222221111110000 111223334444333221 345579999999997764
Q ss_pred CcccHHHHHHHhcccceEEEEeCCCCC
Q psy12466 515 NGKSKLYELMTGLNIRKRILLSGTPLQ 541 (680)
Q Consensus 515 n~~s~~~~~l~~l~~~~rllLTgTP~~ 541 (680)
-+- ++.-+.-..+++|-|-+.|
T Consensus 810 lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 810 LPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred cch-----hhhhhhhcceEEEeccccc
Confidence 332 3444556667888887654
No 206
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=95.20 E-value=0.056 Score=63.78 Aligned_cols=120 Identities=20% Similarity=0.165 Sum_probs=71.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~ 448 (680)
..++-|.-|.--|. .|.|.-..+|-|||++|...+......|. .+-||+|+..+ ..|.
T Consensus 80 ~~~dvQlig~l~l~-----------~G~iaEm~TGEGKTLvA~l~a~l~al~G~-------~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 80 RPFDVQIIGGIVLH-----------EGNIAEMKTGEGKTLTATLPVYLNALTGK-------GVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred CCchhHHHHHHHHh-----------cCCcccccCCCCCcHHHHHHHHHHHHcCC-------CeEEEeccHHHHHhhHHHH
Confidence 34556776664441 46677799999999998765555555543 38999998655 4566
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-----HH----HHhhhccCceEEEEcCcccc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-----RA----YQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-----~~----~~~l~~~~~~~vIlDEaH~~ 513 (680)
..+-++++ +++.+..+.......... -.++|+-+|-..+. .. .+......++++|+||+..+
T Consensus 142 ~~~~~~LG-l~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 142 GELYRWLG-LTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred HHHHHhcC-CeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhe
Confidence 66666655 445544443333222222 24566665544443 21 12233457889999999876
No 207
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=95.20 E-value=0.042 Score=62.93 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=53.9
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCC--eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
.++|||+|+. |..++.++++.+..... ...+.++..............+|+|+|.+.+...... +.-....+||+
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lVi 276 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVL 276 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEe
Confidence 4799999976 56789999998874333 3333333322222112224578999999988654432 22244778999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-..
T Consensus 277 DEad~ml~~ 285 (518)
T PLN00206 277 DEVDCMLER 285 (518)
T ss_pred ecHHHHhhc
Confidence 999998654
No 208
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.36 Score=52.94 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=97.8
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc--hHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS--LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s--ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.-.++.-.+|.|||.++.-++..+...... ...++.+|+-.. .-..|+ ++.|...+.+.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~---~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDD---KSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc---CCCeEEEEeccCccHHHHHH--HHHHhhcCCcce-------------
Confidence 346677899999999998888776543210 012455555542 112222 444443322221
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccH---HHHHHHhcc--cceEEEEeCCCCCCCHHHHHHH
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSK---LYELMTGLN--IRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~---~~~~l~~l~--~~~rllLTgTP~~n~~~el~sl 550 (680)
.+..+++.+......+ ..+++||+|++.+....... ..+.+.... ....++|+||-=++.+.+.+.-
T Consensus 237 ------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 237 ------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred ------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 1222455555544444 46899999999987533222 222222222 2466999999999999988887
Q ss_pred HhhhCCCC-----------CCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeee
Q psy12466 551 NDFANPGV-----------LGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRR 607 (680)
Q Consensus 551 l~fl~p~~-----------l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRr 607 (680)
+..+.+.. +|..=.+......|+..-.... .....+..-....|.+.+-.|-++-
T Consensus 309 ~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq--~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 309 FSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQ--IVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred hcCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCC--CChhhhhhCCHHHHHHHhcCCCccc
Confidence 76665443 2223344444455554433211 1111222333455555665565543
No 209
>PRK01172 ski2-like helicase; Provisional
Probab=95.09 E-value=0.056 Score=64.02 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=53.5
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh--cCCCcEEEEc
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~--~~~~~~vI~D 268 (680)
.++++|+|. +|..++.+++.++.. +.++....|+..... .. ....+|+|+|+|.+......-. -..+++||+|
T Consensus 66 ~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~-~~--~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViD 142 (674)
T PRK01172 66 LKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPP-DF--IKRYDVVILTSEKADSLIHHDPYIINDVGLIVAD 142 (674)
T ss_pred CcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCh-hh--hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEe
Confidence 478999995 567889999998753 244555555432211 11 2456999999998755433111 1347899999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|+|.+.+.
T Consensus 143 EaH~l~d~ 150 (674)
T PRK01172 143 EIHIIGDE 150 (674)
T ss_pred cchhccCC
Confidence 99999764
No 210
>PRK00254 ski2-like helicase; Provisional
Probab=95.08 E-value=0.058 Score=64.33 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=54.5
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh--cCCCcEEEEc
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~--~~~~~~vI~D 268 (680)
.++|+|+|.. |+.++.++|.+|.. ..++..++|+..... .+....+|+|+|+|.+......-. -...++||+|
T Consensus 69 ~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 69 GKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred CeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 4799999955 56789999988753 245555655543221 123457899999998865443110 1357899999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|+|.+-+.
T Consensus 146 E~H~l~~~ 153 (720)
T PRK00254 146 EIHLIGSY 153 (720)
T ss_pred CcCccCCc
Confidence 99999654
No 211
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.05 E-value=0.031 Score=65.55 Aligned_cols=77 Identities=13% Similarity=0.231 Sum_probs=54.0
Q ss_pred eEEEEECcccH-HHHHHHHHHHhCC--CCeeEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCCcEEE
Q psy12466 194 RVLIVTPSSLT-SNWNDEFKKWLGL--TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLI 266 (680)
Q Consensus 194 ~~LIV~P~sl~-~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI 266 (680)
++||++|+..+ .||.++|++|++. .++..++++....... .......+|+|.|...+..... + .+.++||
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~-~--~~l~lvV 362 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE-F--KRLALVI 362 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc-c--cccceEE
Confidence 78999997665 7999999999963 5566666654432221 2233457899999988753221 2 3578999
Q ss_pred EcCCCCC
Q psy12466 267 CDEKSLL 273 (680)
Q Consensus 267 ~DEaH~l 273 (680)
+||+|++
T Consensus 363 IDEaH~f 369 (630)
T TIGR00643 363 IDEQHRF 369 (630)
T ss_pred Eechhhc
Confidence 9999986
No 212
>KOG0949|consensus
Probab=94.96 E-value=0.12 Score=60.79 Aligned_cols=149 Identities=19% Similarity=0.139 Sum_probs=96.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh--CCCCeeEeecCCcchhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL--GLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~--~~~~v~~~~~~~~~~~~ 472 (680)
.+...++...+-.|||..+.-++....+... .+-++.|+|. +++.|=..++..-+ +.....+..-..-.+..
T Consensus 525 r~eSavIVAPTSaGKTfisfY~iEKVLResD-----~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEY 599 (1330)
T KOG0949|consen 525 RNESAVIVAPTSAGKTFISFYAIEKVLRESD-----SDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEY 599 (1330)
T ss_pred cccceEEEeeccCCceeccHHHHHHHHhhcC-----CCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHh
Confidence 4567889999999999999888888777654 2458889996 78888887775443 22111111111111111
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhh-hc----cCceEEEEcCcccccCcc-cHHHHHHHhcccceEEEEeCCCCCCCHHH
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTI-VD----TEFDLLICDEGHRLKNGK-SKLYELMTGLNIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l-~~----~~~~~vIlDEaH~~kn~~-s~~~~~l~~l~~~~rllLTgTP~~n~~~e 546 (680)
.. ....++|.||-.+-+....-.- .. .+..+||+||+|.+.+.. ......+-.+-..-.++||||- +++..
T Consensus 600 si-np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~LSATi--gN~~l 676 (1330)
T KOG0949|consen 600 SI-NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVLSATI--GNPNL 676 (1330)
T ss_pred cC-CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCCeeEEeccc--CCHHH
Confidence 11 1346889999999887644321 01 246799999999998864 4455555555666779999994 55555
Q ss_pred HHHHHh
Q psy12466 547 FFYLND 552 (680)
Q Consensus 547 l~sll~ 552 (680)
++-.++
T Consensus 677 ~qkWln 682 (1330)
T KOG0949|consen 677 FQKWLN 682 (1330)
T ss_pred HHHHHH
Confidence 554444
No 213
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=94.96 E-value=0.042 Score=68.40 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=58.0
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCC--e---eEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCC
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTR--M---CPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEF 262 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~--~---~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~ 262 (680)
.++|||+|+.- ..|+.++|++++.... . ..++++....... .......+|+|+|...+......+.. .+
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~ 200 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KF 200 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CC
Confidence 47999999665 5789999999985322 2 2344543322211 12234578999999999887776665 89
Q ss_pred cEEEEcCCCCCCC
Q psy12466 263 DLLICDEKSLLKP 275 (680)
Q Consensus 263 ~~vI~DEaH~lKN 275 (680)
+++|+||||++-.
T Consensus 201 ~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 201 DFIFVDDVDALLK 213 (1171)
T ss_pred CEEEEeChHhhhh
Confidence 9999999999865
No 214
>KOG4284|consensus
Probab=94.92 E-value=0.061 Score=60.67 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=90.3
Q ss_pred CceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhC---CCCeeEeecCCcchhh
Q psy12466 398 EGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLG---LTRMCPYHVNQKNKAE 472 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~---~~~v~~~~~~~~~~~~ 472 (680)
-.-|+-.-.|+|||+.- ++.+..+-.... . --.+||+|+ -+.-|-++-|.+.++ +++..+|-|.......
T Consensus 63 mDliVQaKSGTGKTlVfsv~av~sl~~~~~--~---~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d 137 (980)
T KOG4284|consen 63 MDLIVQAKSGTGKTLVFSVLAVESLDSRSS--H---IQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLD 137 (980)
T ss_pred cceEEEecCCCCceEEEEeeeehhcCcccC--c---ceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhh
Confidence 34688889999999873 333333322221 1 127999998 455777777887776 3455556555443322
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcccH---HHHHHHhc-ccceEEEEeCCCCCCCHHH
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKSK---LYELMTGL-NIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s~---~~~~l~~l-~~~~rllLTgTP~~n~~~e 546 (680)
........|+|.|...+...++. +.-...+++|+|||..+-...+- ....+..+ ..+-.++.|||=-+| +.+
T Consensus 138 -~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n-Ldn 215 (980)
T KOG4284|consen 138 -LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN-LDN 215 (980)
T ss_pred -hhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh-HHH
Confidence 22334567999999998776542 33346789999999998664433 33445555 455678999996544 444
Q ss_pred H
Q psy12466 547 F 547 (680)
Q Consensus 547 l 547 (680)
+
T Consensus 216 ~ 216 (980)
T KOG4284|consen 216 L 216 (980)
T ss_pred H
Confidence 3
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.91 E-value=0.21 Score=49.51 Aligned_cols=135 Identities=20% Similarity=0.255 Sum_probs=78.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
.+|.-..|.|||.++.-+++.+...+ +++.+||--.---.=.++++.|...+.+.++........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~-------~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~-------- 68 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKG-------KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDP-------- 68 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---------EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCH--------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcc-------ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhh--------
Confidence 35677899999999999998888773 246666654333333355555554444544443221111
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHh----c-ccceEEEEeCCCCCCCHHHHHHHHhhh
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG----L-NIRKRILLSGTPLQNDLQEFFYLNDFA 554 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~----l-~~~~rllLTgTP~~n~~~el~sll~fl 554 (680)
-+.+.+..+.+...++|+|++|-+-+..+... ....+.. + ....-++|++|--+..+.++......+
T Consensus 69 -------~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~-~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 69 -------AEIAREALEKFRKKGYDLVLIDTAGRSPRDEE-LLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp -------HHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHH-HHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred -------HHHHHHHHHHHhhcCCCEEEEecCCcchhhHH-HHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 11233334455566799999999876543322 2222222 2 445679999998777777666665655
Q ss_pred CCC
Q psy12466 555 NPG 557 (680)
Q Consensus 555 ~p~ 557 (680)
.+.
T Consensus 141 ~~~ 143 (196)
T PF00448_consen 141 GID 143 (196)
T ss_dssp STC
T ss_pred cCc
Confidence 444
No 216
>PLN03025 replication factor C subunit; Provisional
Probab=94.88 E-value=0.68 Score=49.52 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=35.9
Q ss_pred CceEEEEcCcccccCccc-HHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCC
Q psy12466 501 EFDLLICDEGHRLKNGKS-KLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVL 559 (680)
Q Consensus 501 ~~~~vIlDEaH~~kn~~s-~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l 559 (680)
.+.++|+||+|.+..... ...+.+.......+++++++....-+..+-+-+..+.-..+
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 588999999999843222 12223333345567888888766655666665544443333
No 217
>KOG0950|consensus
Probab=94.85 E-value=0.26 Score=58.28 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=86.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHH-HHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCC--eeEeecCCcchh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIW-TLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTR--MCPYHVNQKNKA 471 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~-~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~--v~~~~~~~~~~~ 471 (680)
.+.++|.+..++-|||+.+=-++. .....+ +.+|.+.|- +.+..=..++..|.-+.- +-.|.|....
T Consensus 239 e~~nliys~Pts~gktlvaeilml~~~l~~r-------r~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p-- 309 (1008)
T KOG0950|consen 239 ERKNLIYSLPTSAGKTLVAEILMLREVLCRR-------RNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPP-- 309 (1008)
T ss_pred cccceEEeCCCccchHHHHHHHHHHHHHHHh-------hceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCC--
Confidence 568899999999999998744333 222222 237888885 555555566666654332 2233322111
Q ss_pred hhhhhcCCCCEEEEeHHHHHHHHHhhhcc----CceEEEEcCcccccCc--ccHHHHHHHhc----ccc--eEEEEeCCC
Q psy12466 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDT----EFDLLICDEGHRLKNG--KSKLYELMTGL----NIR--KRILLSGTP 539 (680)
Q Consensus 472 ~~~~~~~~~~vvI~ty~~l~~~~~~l~~~----~~~~vIlDEaH~~kn~--~s~~~~~l~~l----~~~--~rllLTgTP 539 (680)
......-.+.|+|-++....++.+... ..++||+||-|.+... +.-.-..+.++ ... ..++||||-
T Consensus 310 --~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi 387 (1008)
T KOG0950|consen 310 --EKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATI 387 (1008)
T ss_pred --CCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeeccc
Confidence 112234579999999988877766543 4679999999998443 22222222222 122 369999998
Q ss_pred CCCCHHHHH
Q psy12466 540 LQNDLQEFF 548 (680)
Q Consensus 540 ~~n~~~el~ 548 (680)
-+|.+-.-|
T Consensus 388 ~N~~lL~~~ 396 (1008)
T KOG0950|consen 388 PNNSLLQDW 396 (1008)
T ss_pred CChHHHHHH
Confidence 777655443
No 218
>KOG0341|consensus
Probab=94.84 E-value=0.033 Score=59.06 Aligned_cols=141 Identities=19% Similarity=0.142 Sum_probs=70.9
Q ss_pred ceEEEcCCCCChHHH----HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHh--------CCCCeeEeec
Q psy12466 399 GAILADEMGLGKTLQ----CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWL--------GLTRMCPYHV 465 (680)
Q Consensus 399 g~iLaDemGlGKT~~----aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~--------~~~~v~~~~~ 465 (680)
..|=-.-+|.|||++ +|.|+..-...-|.......--|||||+ -|..|-.+-+..|+ |.++..+--|
T Consensus 209 DmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciG 288 (610)
T KOG0341|consen 209 DMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIG 288 (610)
T ss_pred ceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Confidence 333335589999986 3444433222111110000114999998 55566666666665 3333332222
Q ss_pred CCcchhhhhhhcCCCCEEEEeHHHHHHHHHh-h-hccCceEEEEcCcccccCcc--cHHHHHHHhccc-ceEEEEeCCC
Q psy12466 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-I-VDTEFDLLICDEGHRLKNGK--SKLYELMTGLNI-RKRILLSGTP 539 (680)
Q Consensus 466 ~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-l-~~~~~~~vIlDEaH~~kn~~--s~~~~~l~~l~~-~~rllLTgTP 539 (680)
....+..-..-.....++++|...+...... . .-.-..++.+|||.++-.-. ........-+++ +..++.|||.
T Consensus 289 G~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM 367 (610)
T KOG0341|consen 289 GVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM 367 (610)
T ss_pred CccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc
Confidence 2222221112223456888888877654322 1 11235689999999974422 222222222333 3358999995
No 219
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.80 E-value=0.52 Score=49.53 Aligned_cols=138 Identities=17% Similarity=0.124 Sum_probs=72.1
Q ss_pred HHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceE-EEEecc-chHHHHHHHHHHHhCC
Q psy12466 380 QGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKV-LIVTPS-SLTSNWNDEFKKWLGL 457 (680)
Q Consensus 380 ~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~-LIV~P~-sll~qW~~E~~~~~~~ 457 (680)
++++.|-+-+..-....-.+-+|.-+.|.|||..+=.|..........+.. ..|+ +|-+|. .-.......+-..++-
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~-~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAE-RIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCc-cccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 445544433222222334678888999999999776666544322211111 1244 445554 4556666666554321
Q ss_pred CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc-cCcccHHHHH---HHhcccce--
Q psy12466 458 TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL-KNGKSKLYEL---MTGLNIRK-- 531 (680)
Q Consensus 458 ~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~-kn~~s~~~~~---l~~l~~~~-- 531 (680)
. +....+ ....-......+...+..++||||.|++ .+...+.-.. ++.|....
T Consensus 123 P----~~~~~~-----------------~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 123 P----YRPRDR-----------------VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred c----cCCCCC-----------------HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 0 111000 0111122345677889999999999996 4443443333 33443332
Q ss_pred EEEEeCCC
Q psy12466 532 RILLSGTP 539 (680)
Q Consensus 532 rllLTgTP 539 (680)
-+++.||+
T Consensus 182 piV~vGt~ 189 (302)
T PF05621_consen 182 PIVGVGTR 189 (302)
T ss_pred CeEEeccH
Confidence 26777887
No 220
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.78 E-value=0.16 Score=52.61 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=23.1
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..+.+|.-++|+|||..|-+++..+...+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 34578999999999999988887765543
No 221
>PTZ00424 helicase 45; Provisional
Probab=94.75 E-value=0.055 Score=59.62 Aligned_cols=84 Identities=8% Similarity=0.033 Sum_probs=51.2
Q ss_pred CCeEEEEECccc-HHHHHHHHHHHhCCCCee--EEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEE
Q psy12466 192 ILRVLIVTPSSL-TSNWNDEFKKWLGLTRMC--PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~sl-~~nW~~E~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI 266 (680)
..++||++|..- ..++.+.+........+. ...++..............+|+|+|.+.+..... .+.-..+++||
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvV 175 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFI 175 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEE
Confidence 347999999654 567777777766433332 2333322211111122346899999998765433 22234589999
Q ss_pred EcCCCCCCC
Q psy12466 267 CDEKSLLKP 275 (680)
Q Consensus 267 ~DEaH~lKN 275 (680)
+||+|++-.
T Consensus 176 iDEah~~~~ 184 (401)
T PTZ00424 176 LDEADEMLS 184 (401)
T ss_pred EecHHHHHh
Confidence 999999865
No 222
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=94.75 E-value=0.13 Score=60.26 Aligned_cols=128 Identities=25% Similarity=0.294 Sum_probs=75.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
-++=..||+|||...+-++....... ..++|+|.-. +++.+-...|+...-. ....|........ ...
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~~------~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i----~~~ 120 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKNP------DKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYII----DGR 120 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccCC------CCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccccc----ccc
Confidence 35668999999998888776654321 1357888764 7878877777653211 1222322221111 112
Q ss_pred CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc-cc-------HHHHHHHhc--ccceEEEEeCCC
Q psy12466 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG-KS-------KLYELMTGL--NIRKRILLSGTP 539 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~-~s-------~~~~~l~~l--~~~~rllLTgTP 539 (680)
.++-+++..+.+.+....+. .+||+|||||+-.+-+. .| .....+..+ +++..++|-||-
T Consensus 121 ~~~rLivqIdSL~R~~~~~l-~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDGSLL-DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred ccCeEEEEehhhhhcccccc-cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 46788888888876544322 24999999997543221 11 112222222 677888888875
No 223
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.69 E-value=0.55 Score=54.50 Aligned_cols=44 Identities=18% Similarity=0.041 Sum_probs=29.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|...++.|.+.+.. ..-.+..|+.-..|+|||..|.+++..+..
T Consensus 20 Qe~vv~~L~~aI~~--grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 20 QNHVSRALSSALER--GRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred cHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 55555555443221 112345589999999999999999888754
No 224
>KOG1132|consensus
Probab=94.59 E-value=0.19 Score=58.86 Aligned_cols=84 Identities=17% Similarity=0.102 Sum_probs=51.3
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHH----HHHHHHHhcC----------------CC--
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI----ALIWTLLRQG----------------PY-- 427 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~ai----ali~~~~~~~----------------~~-- 427 (680)
+-.+.+|-|+.-...++.++. ...+|+|-+.+|+|||+.-| |+...+.... +.
T Consensus 18 fP~qpY~~Q~a~M~rvl~~L~-----~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~ 92 (945)
T KOG1132|consen 18 FPFQPYPTQLAFMTRVLSCLD-----RKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDS 92 (945)
T ss_pred ccCCcchHHHHHHHHHHHHHH-----HhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccC
Confidence 444567778777666666542 34669999999999999743 3333333110 00
Q ss_pred --------CCC----ccceEEEEecc--chHHHHHHHHHHHhCCC
Q psy12466 428 --------GMP----VIRKVLIVTPS--SLTSNWNDEFKKWLGLT 458 (680)
Q Consensus 428 --------~~~----~~~~~LIV~P~--sll~qW~~E~~~~~~~~ 458 (680)
+.| ...|.++.+.. +-+.|=.+|+.+..-..
T Consensus 93 ~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~v 137 (945)
T KOG1132|consen 93 GGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRV 137 (945)
T ss_pred CCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCC
Confidence 011 12356777775 34788889998875433
No 225
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.56 E-value=0.081 Score=56.33 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=29.2
Q ss_pred cCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCC
Q psy12466 500 TEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541 (680)
Q Consensus 500 ~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~ 541 (680)
..-.+||+||||++. .....-.+.+.-..-++.+||-|-|
T Consensus 350 l~~~FiIIDEaQNLT--pheikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 350 LPDSFIIIDEAQNLT--PHELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred cccceEEEehhhccC--HHHHHHHHHhccCCCEEEEcCCHHH
Confidence 345689999999983 3344445566677789999998855
No 226
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=94.53 E-value=0.18 Score=59.83 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=65.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hH---HHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LT---SNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.|.|--..+|=|||+++...+....-.| +.+-||+++. |. ..|...+-+|++. .+.+...........
T Consensus 99 ~G~IAEM~TGEGKTL~atlpaylnAL~G-------kgVhVVTvNdYLA~RDae~m~~vy~~LGL-tvg~i~~~~~~~err 170 (939)
T PRK12902 99 EGQIAEMKTGEGKTLVATLPSYLNALTG-------KGVHVVTVNDYLARRDAEWMGQVHRFLGL-SVGLIQQDMSPEERK 170 (939)
T ss_pred CCceeeecCCCChhHHHHHHHHHHhhcC-------CCeEEEeCCHHHHHhHHHHHHHHHHHhCC-eEEEECCCCChHHHH
Confidence 5777789999999998654333222232 2388898884 44 7899999999875 444433222222222
Q ss_pred hhhcCCCCEEEEeHHHH-----HHHHHh----hhccCceEEEEcCcccc
Q psy12466 474 YVYSRVSPVLIISYEML-----IRAYQT----IVDTEFDLLICDEGHRL 513 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l-----~~~~~~----l~~~~~~~vIlDEaH~~ 513 (680)
..-.++|+.+|-..+ +..+.. .....++++|+||+..+
T Consensus 171 --~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 171 --KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred --HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 122567777765555 333322 23457889999999876
No 227
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.42 E-value=0.083 Score=60.19 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=53.5
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhh--hc--ccCCCCEEEEehhHHHHHHHhhhcCCCcEEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED--YV--YSRVSPVLIISYEMLIRAYQTIVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~ 267 (680)
+++||++|. +|..++.+.|++.++ .++.++++.-...... +. .....+|+|.|...+.. .-.++++||+
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf~-----p~~~l~lIIV 99 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALFL-----PFKNLGLIIV 99 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHcC-----cccCCCEEEE
Confidence 479999995 577899999999886 5677777654332221 11 23456899999886631 1235799999
Q ss_pred cCCCCCC
Q psy12466 268 DEKSLLK 274 (680)
Q Consensus 268 DEaH~lK 274 (680)
||.|..-
T Consensus 100 DEeh~~s 106 (505)
T TIGR00595 100 DEEHDSS 106 (505)
T ss_pred ECCCccc
Confidence 9999753
No 228
>COG1204 Superfamily II helicase [General function prediction only]
Probab=94.41 E-value=0.08 Score=62.99 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=58.7
Q ss_pred CeEEEEEC-cccHHHHHHHHHHHh-CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhc--CCCcEEEEc
Q psy12466 193 LRVLIVTP-SSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P-~sl~~nW~~E~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~--~~~~~vI~D 268 (680)
.+++-||| .+|...=.+||.+|- -+.++..+.|+..... .+...++|+|||||.+-...+.-.. ...++||+|
T Consensus 77 ~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViD 153 (766)
T COG1204 77 GKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVID 153 (766)
T ss_pred CcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEe
Confidence 47899999 567778888999553 2367777777764332 2236789999999998654443222 458999999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|+|.|...
T Consensus 154 EiH~l~d~ 161 (766)
T COG1204 154 EIHLLGDR 161 (766)
T ss_pred eeeecCCc
Confidence 99999887
No 229
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.32 E-value=0.77 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.1
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.-|+.-..|+|||..+..++..+...
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34788999999999999999888753
No 230
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=1.3 Score=50.58 Aligned_cols=45 Identities=22% Similarity=0.102 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..+.+.+. ...-.. -++.-..|+|||..|..++..+...
T Consensus 20 Gq~~v~~~L~~~~~---~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 20 GQAPVVRALSNALD---QQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCHHHHHHHHHHHH---hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 46666666655432 122233 4788999999999999999887654
No 231
>PRK08116 hypothetical protein; Validated
Probab=94.28 E-value=1.5 Score=45.83 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
+.|.+|.-++|+|||..+.+++..+...+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~ 142 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG 142 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45688999999999999999999988764
No 232
>KOG0925|consensus
Probab=94.27 E-value=0.078 Score=58.00 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc----hH---HHHHHHHHHHhCCC---CeeEeec
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS----LT---SNWNDEFKKWLGLT---RMCPYHV 465 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s----ll---~qW~~E~~~~~~~~---~v~~~~~ 465 (680)
++.-.++.-|+|.|||.|.=-++........ ..|.|... .+ ..-.+|+.--.+.. .+..-.-
T Consensus 61 ~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--------~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC 132 (699)
T KOG0925|consen 61 NNQIIVLVGETGSGKTTQIPQFVLEYELSHL--------TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDC 132 (699)
T ss_pred cCceEEEEecCCCCccccCcHHHHHHHHhhc--------cceeecCchHHHHHHHHHHHHHHhccccchhcccccccccc
Confidence 4567889999999999998777665544332 36666531 11 12222222111110 0000000
Q ss_pred CCcchhhhhhhcCCCCEEEEeHHHHHHH-HHhhhccCceEEEEcCcccccCcccHHHHHHHhc--------ccceEEEEe
Q psy12466 466 NQKNKAEDYVYSRVSPVLIISYEMLIRA-YQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL--------NIRKRILLS 536 (680)
Q Consensus 466 ~~~~~~~~~~~~~~~~vvI~ty~~l~~~-~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l--------~~~~rllLT 536 (680)
.+......+ +|-.++.+. +..-.-.+|.++|+||||. .+..+..+..+ ..-..++||
T Consensus 133 ~~~~T~Lky----------~tDgmLlrEams~p~l~~y~viiLDeahE----RtlATDiLmGllk~v~~~rpdLk~vvmS 198 (699)
T KOG0925|consen 133 TSPNTLLKY----------CTDGMLLREAMSDPLLGRYGVIILDEAHE----RTLATDILMGLLKEVVRNRPDLKLVVMS 198 (699)
T ss_pred CChhHHHHH----------hcchHHHHHHhhCcccccccEEEechhhh----hhHHHHHHHHHHHHHHhhCCCceEEEee
Confidence 011111111 222222221 1212224799999999994 34444444433 222459999
Q ss_pred CCCCCCCHHHHHHHHhhh
Q psy12466 537 GTPLQNDLQEFFYLNDFA 554 (680)
Q Consensus 537 gTP~~n~~~el~sll~fl 554 (680)
+|-.-..+..+|.=.-++
T Consensus 199 atl~a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 199 ATLDAEKFQRYFGNAPLL 216 (699)
T ss_pred cccchHHHHHHhCCCCee
Confidence 999888887777644444
No 233
>COG4889 Predicted helicase [General function prediction only]
Probab=94.23 E-value=0.12 Score=60.09 Aligned_cols=32 Identities=38% Similarity=0.548 Sum_probs=25.4
Q ss_pred EEEEehhHHHHHHH--hhhcCCCcEEEEcCCCCC
Q psy12466 242 VLIISYEMLIRAYQ--TIVDTEFDLLICDEKSLL 273 (680)
Q Consensus 242 V~itsYe~l~~~~~--~l~~~~~~~vI~DEaH~l 273 (680)
|+..+|..+-+... ...-..||+||||||||-
T Consensus 283 vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRT 316 (1518)
T COG4889 283 VVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRT 316 (1518)
T ss_pred EEEEcccchHHHHHHHHcCCCCccEEEecchhcc
Confidence 88899998866443 444477999999999985
No 234
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.18 E-value=0.42 Score=48.04 Aligned_cols=44 Identities=18% Similarity=-0.024 Sum_probs=30.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
+..++..|.+.. ........+|.-+.|+|||..+.+++......
T Consensus 22 ~~~~~~~l~~~~---~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~ 65 (226)
T TIGR03420 22 NAELLAALRQLA---AGKGDRFLYLWGESGSGKSHLLQAACAAAEER 65 (226)
T ss_pred cHHHHHHHHHHH---hcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 445555554421 12345678888999999999999888776654
No 235
>KOG0922|consensus
Probab=94.16 E-value=0.16 Score=57.75 Aligned_cols=145 Identities=22% Similarity=0.241 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-----hHHHHHHHHHHHhCCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-----LTSNWNDEFKKWLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-----ll~qW~~E~~~~~~~~~v~~~~~~~~~~ 470 (680)
.+.-.|+.-|+|.|||.|.=-++... |... .+.+-+.=|.- +..-=.+|..--.+..-...+.
T Consensus 65 ~nqvlIviGeTGsGKSTQipQyL~ea---G~~~---~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR------ 132 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQIPQYLAEA---GFAS---SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR------ 132 (674)
T ss_pred HCCEEEEEcCCCCCccccHhHHHHhc---cccc---CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE------
Confidence 45789999999999999987766432 2111 12233334432 2233334443322321111111
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCcccHHHHHHHhc---ccc-eEEEEeCCCCCCCHH
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLYELMTGL---NIR-KRILLSGTPLQNDLQ 545 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l---~~~-~rllLTgTP~~n~~~ 545 (680)
.++ .......|..+|-.++.+.+-. -.-.++++||+||||.=.-.+--+.-.++++ +.. +.+++|||---..+.
T Consensus 133 Fed-~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS 211 (674)
T KOG0922|consen 133 FED-STSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFS 211 (674)
T ss_pred ecc-cCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHH
Confidence 111 0112455888888888765432 1124699999999995211222222233333 333 569999999877777
Q ss_pred HHHHHHhh
Q psy12466 546 EFFYLNDF 553 (680)
Q Consensus 546 el~sll~f 553 (680)
++|+-...
T Consensus 212 ~yF~~a~i 219 (674)
T KOG0922|consen 212 EYFNNAPI 219 (674)
T ss_pred HHhcCCce
Confidence 77765443
No 236
>KOG0329|consensus
Probab=94.12 E-value=0.14 Score=51.64 Aligned_cols=133 Identities=11% Similarity=0.191 Sum_probs=80.3
Q ss_pred EEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH---HHHhCCCCeeEeecCCcchhhhhh
Q psy12466 401 ILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF---KKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 401 iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~---~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
+--.-.|+|||.. +++.+..+.... .--.+||+|.+ .|..|-.+|. .++.|+.++.++.|.-..+.....
T Consensus 83 lcqaksgmgktavfvl~tlqqiepv~-----g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~ 157 (387)
T KOG0329|consen 83 LCQAKSGMGKTAVFVLATLQQIEPVD-----GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEEL 157 (387)
T ss_pred heecccCCCceeeeehhhhhhcCCCC-----CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHH
Confidence 3345679999975 444444333221 12358999997 5667776665 555689888888776554443333
Q ss_pred hcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccCcccHHHHHHHhc-----ccceEEEEeCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----NIRKRILLSGTP 539 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----~~~~rllLTgTP 539 (680)
......|++.|...+..... .+.-......|+||+..+-. .-...+-+..+ ..+....+|||-
T Consensus 158 lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle-~lDMrRDvQEifr~tp~~KQvmmfsatl 227 (387)
T KOG0329|consen 158 LKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE-QLDMRRDVQEIFRMTPHEKQVMMFSATL 227 (387)
T ss_pred HhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH-HHHHHHHHHHHhhcCcccceeeeeeeec
Confidence 33456788999888755432 23333567899999986532 22223333333 334457888885
No 237
>KOG0926|consensus
Probab=94.11 E-value=0.25 Score=57.25 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc--hH---HHHHHHHHHHhCCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS--LT---SNWNDEFKKWLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s--ll---~qW~~E~~~~~~~~~v~~~~~~~~~~ 470 (680)
.+.-.|+|-++|.|||.|.=-|+....-..+... ..+=+=|-=|.- .+ .--..|+..+-......+.. .+
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~-~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf-d~--- 344 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSS-SPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF-DG--- 344 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCC-CCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe-cc---
Confidence 4567999999999999998877754322221110 001123333432 22 22233444311111111111 11
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHH-hhhccCceEEEEcCcccccCcccHHH-HHHH--------------hcccceEEE
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEGHRLKNGKSKLY-ELMT--------------GLNIRKRIL 534 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~-~l~~~~~~~vIlDEaH~~kn~~s~~~-~~l~--------------~l~~~~rll 534 (680)
.......|-++|-..+.+.+. .+.-.++.+||+||||.= +-++... -.+. +++.-.-++
T Consensus 345 ----ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLII 419 (1172)
T KOG0926|consen 345 ----TIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLII 419 (1172)
T ss_pred ----ccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEE
Confidence 011245688898888876553 344457999999999952 2222211 1111 112334599
Q ss_pred EeCCCCCCCHHH
Q psy12466 535 LSGTPLQNDLQE 546 (680)
Q Consensus 535 LTgTP~~n~~~e 546 (680)
||||---.++.|
T Consensus 420 MSATLRVsDFte 431 (1172)
T KOG0926|consen 420 MSATLRVSDFTE 431 (1172)
T ss_pred EeeeEEeccccc
Confidence 999985555544
No 238
>PRK14974 cell division protein FtsY; Provisional
Probab=94.10 E-value=0.9 Score=48.93 Aligned_cols=120 Identities=11% Similarity=0.107 Sum_probs=64.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc----chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS----SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~----sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.-.++.-..|.|||.++..++..+...+. +++++... ....||.....+. .+.++........
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~-------~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~dp-- 207 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGF-------SVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGADP-- 207 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCC-------eEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCCH--
Confidence 34667789999999998888887766542 36666543 3446665444432 1222211110000
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----ccceEEEEeCCCCCCCH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----NIRKRILLSGTPLQNDL 544 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----~~~~rllLTgTP~~n~~ 544 (680)
...+............|+||+|.|++..+.... ...+..+ .....+++++|.-++.+
T Consensus 208 -------------~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~l-m~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 208 -------------AAVAYDAIEHAKARGIDVVLIDTAGRMHTDANL-MDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred -------------HHHHHHHHHHHHhCCCCEEEEECCCccCCcHHH-HHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 011122222333456899999999988644333 2233332 23345788887644333
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.09 E-value=0.62 Score=47.55 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+..++..+.+.. ........+|.-..|+|||..+.+++......+
T Consensus 28 ~n~~a~~~l~~~~---~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~ 73 (235)
T PRK08084 28 DNDSLLAALQNAL---RQEHSGYIYLWSREGAGRSHLLHAACAELSQRG 73 (235)
T ss_pred ccHHHHHHHHHHH---hCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 3455555554321 122345788999999999999988887766543
No 240
>KOG0344|consensus
Probab=94.08 E-value=0.091 Score=58.83 Aligned_cols=133 Identities=19% Similarity=0.231 Sum_probs=82.0
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
.|-|+.++-.++. ++.++-+..+|.|||+.-+. ++..+...........-+.+|+.|. .|..|-..|+.
T Consensus 160 t~iq~~aipvfl~---------~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~ 230 (593)
T KOG0344|consen 160 TPIQKQAIPVFLE---------KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMR 230 (593)
T ss_pred Ccccchhhhhhhc---------ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHH
Confidence 3568888877755 36788889999999876433 3334433321111223468999996 78899999999
Q ss_pred HHh--CCCCeeEeecCCc--ch-hhhhhhcCCCCEEEEeHHHHHHHHHh----hhccCceEEEEcCcccccCc
Q psy12466 453 KWL--GLTRMCPYHVNQK--NK-AEDYVYSRVSPVLIISYEMLIRAYQT----IVDTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 453 ~~~--~~~~v~~~~~~~~--~~-~~~~~~~~~~~vvI~ty~~l~~~~~~----l~~~~~~~vIlDEaH~~kn~ 516 (680)
++. +............ .. .........++++|.|...+...+.. +.-.....+|+|||..+..+
T Consensus 231 k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 231 KYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred hcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 987 3322222111111 11 11122233567888888887665543 22235678999999999877
No 241
>PRK13767 ATP-dependent helicase; Provisional
Probab=94.07 E-value=0.084 Score=64.26 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=51.5
Q ss_pred CeEEEEECccc-HHHHHH-------HHHHHh-------CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--
Q psy12466 193 LRVLIVTPSSL-TSNWND-------EFKKWL-------GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-- 255 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~-------E~~k~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-- 255 (680)
-++|+|+|+-- ..++.+ ++.+|+ +..++.+.+|+..............+|+|||.|++.....
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~ 164 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP 164 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh
Confidence 36899999654 445544 454554 2345566666654333322223457899999999864332
Q ss_pred ----hhhcCCCcEEEEcCCCCCCCC
Q psy12466 256 ----TIVDTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 256 ----~l~~~~~~~vI~DEaH~lKN~ 276 (680)
.+ .+.++||+||+|.+-+.
T Consensus 165 ~~~~~l--~~l~~VVIDE~H~l~~~ 187 (876)
T PRK13767 165 KFREKL--RTVKWVIVDEIHSLAEN 187 (876)
T ss_pred hHHHHH--hcCCEEEEechhhhccC
Confidence 12 24688999999999754
No 242
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.05 E-value=0.6 Score=51.03 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
+.-.+|.-++|.|||..++.++..+...+ .++|+|.-.....|......++--..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g-------~~VlYvs~EEs~~qi~~Ra~rlg~~~------------------ 136 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEESPEQIKLRADRLGIST------------------ 136 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcC-------CeEEEEECCcCHHHHHHHHHHcCCCc------------------
Confidence 44567889999999999999988776653 25888876655555554444431000
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.++.+.....+......+...+.++||||+.+.+.
T Consensus 137 ---~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 ---ENLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ---ccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 11222222223333444556789999999999874
No 243
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.93 E-value=1 Score=52.64 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=29.8
Q ss_pred cHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...+..|.+.+. ...-.. .|+.-+.|+|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~~l~---~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALD---LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 5555555554432 112233 4788999999999999999887664
No 244
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=93.83 E-value=0.18 Score=59.82 Aligned_cols=119 Identities=22% Similarity=0.274 Sum_probs=69.5
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~~ 449 (680)
.++-|.-|.--| ..|.|.-..+|-|||+++...+....-.| +.+-||+++.-+ .+|..
T Consensus 77 ~ydvQlig~l~L-----------~~G~IaEm~TGEGKTL~a~l~ayl~aL~G-------~~VhVvT~NdyLA~RD~e~m~ 138 (870)
T CHL00122 77 HFDVQLIGGLVL-----------NDGKIAEMKTGEGKTLVATLPAYLNALTG-------KGVHIVTVNDYLAKRDQEWMG 138 (870)
T ss_pred CCchHhhhhHhh-----------cCCccccccCCCCchHHHHHHHHHHHhcC-------CceEEEeCCHHHHHHHHHHHH
Confidence 445577665333 25677778999999997654443222233 248999998444 77999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHH-----HHHH----HhhhccCceEEEEcCcccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRAY----QTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l-----~~~~----~~l~~~~~~~vIlDEaH~~ 513 (680)
.+-+|++. .+.+.............+ .++|+-+|-..+ +..+ .......+.++|+||+..+
T Consensus 139 pvy~~LGL-svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 139 QIYRFLGL-TVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHHHHcCC-ceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 99999884 444433322222222222 345555544332 2221 1223456899999999875
No 245
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=93.81 E-value=0.097 Score=60.99 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCCCCeEEEEEC-cccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh-------hhcC
Q psy12466 189 RSYILRVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-------IVDT 260 (680)
Q Consensus 189 ~~~~~~~LIV~P-~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~-------l~~~ 260 (680)
...+||+|-.+= .+|+.|=..+|+.+.|......+..+... ...+.|.|.+|-++...... +...
T Consensus 212 ~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g 284 (875)
T COG4096 212 SGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPG 284 (875)
T ss_pred cchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCC
Confidence 346788998886 77788888899999996555544433221 12578999999999764432 3335
Q ss_pred CCcEEEEcCCCCCCCCCCCCCccccCCCCCCceecc
Q psy12466 261 EFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDS 296 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LT 296 (680)
.||+||+|||||=- .+.++++..--+..+++||
T Consensus 285 ~FDlIvIDEaHRgi---~~~~~~I~dYFdA~~~gLT 317 (875)
T COG4096 285 FFDLIVIDEAHRGI---YSEWSSILDYFDAATQGLT 317 (875)
T ss_pred ceeEEEechhhhhH---HhhhHHHHHHHHHHHHhhc
Confidence 59999999999721 2223344444444566775
No 246
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.80 E-value=0.76 Score=47.20 Aligned_cols=66 Identities=23% Similarity=0.243 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
+.|..++..+.+.... ......+.+|.-.+|+|||..+.+++..+...+. +++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~-~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~-------~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEE-FDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK-------SVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHh-hccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC-------eEEEE----EHHHHHHHHHH
Confidence 3466676665543211 1222357889999999999999999998877653 35555 24566665554
No 247
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=93.79 E-value=0.11 Score=54.93 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=35.6
Q ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHh--------ch------------hhHHHHHHHHHHhccCccccCCCCCcc
Q psy12466 620 RETLLVCRATPLQQSLYLRCVEYWDARA--------SR------------DSHLSVTHALRKICNHPGLVQQPDMME 676 (680)
Q Consensus 620 ~e~~v~v~ms~~Q~~lY~~l~~~~~~~~--------~~------------~~~l~~l~~LRqicnHP~L~~~~~~~~ 676 (680)
.++.+.++|+..|+++|+.++......+ .. ..+-..+.+|+.+|+||+|+-+-.|++
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk 80 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPK 80 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCcc
Confidence 3678999999999999999987554333 00 223446678999999999976665543
No 248
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.70 E-value=1.1 Score=49.02 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=74.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cc---hHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SS---LTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~s---ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
+...|.-..|.|||.++..++..+...+. ++++|.- .. .+.||..-.. ...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-------kVglI~aDt~RiaAvEQLk~yae----~lg-------------- 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-------TVGFITTDHSRIGTVQQLQDYVK----TIG-------------- 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC-------cEEEEecCCcchHHHHHHHHHhh----hcC--------------
Confidence 34567788999999999998887765542 3555554 32 4466653222 111
Q ss_pred hhhcCCCCEE-EEeHHHHHHHHHhhhc-cCceEEEEcCcccccCcccHHHHH---HHhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 474 YVYSRVSPVL-IISYEMLIRAYQTIVD-TEFDLLICDEGHRLKNGKSKLYEL---MTGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 474 ~~~~~~~~vv-I~ty~~l~~~~~~l~~-~~~~~vIlDEaH~~kn~~s~~~~~---l~~l~-~~~rllLTgTP~~n~~~el 547 (680)
.+++ ..+...+.+.+..+.. .++|+||+|-+=+..+........ +.... ....+.|+||--.+.+.++
T Consensus 297 ------ipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i 370 (436)
T PRK11889 297 ------FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 370 (436)
T ss_pred ------CcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHH
Confidence 1122 2234445555555543 368999999987654332222222 21112 2234778888777777777
Q ss_pred HHHHhhhCCC
Q psy12466 548 FYLNDFANPG 557 (680)
Q Consensus 548 ~sll~fl~p~ 557 (680)
...++.+..+
T Consensus 371 ~~~F~~~~id 380 (436)
T PRK11889 371 ITNFKDIHID 380 (436)
T ss_pred HHHhcCCCCC
Confidence 7776665444
No 249
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.65 E-value=1.5 Score=52.67 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=22.3
Q ss_pred Cce-EEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 398 EGA-ILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 398 ~g~-iLaDemGlGKT~~aiali~~~~~~ 424 (680)
... |+.-+.|+|||..+-.|+..+...
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 445 789999999999999999877643
No 250
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=93.61 E-value=0.14 Score=59.64 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=53.6
Q ss_pred eEEEEEC-cccHHHHHHHHHHHhCCCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHH--HHHhhhcCCCcEEE
Q psy12466 194 RVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLLI 266 (680)
Q Consensus 194 ~~LIV~P-~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~--~~~~l~~~~~~~vI 266 (680)
.+|||+| .+|+.++.+.++.. + ..+..++++...... ........++++++.|.+.. ....+.....++||
T Consensus 55 ~~lVisPl~sL~~dq~~~l~~~-g-i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 55 LTVVISPLISLMKDQVDQLRAA-G-VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred cEEEEcCCHHHHHHHHHHHHHc-C-CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 5799999 45667888888874 2 344444444322211 12233567899999998853 33456667899999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||.+-.+
T Consensus 133 iDEaH~i~~~ 142 (591)
T TIGR01389 133 VDEAHCVSQW 142 (591)
T ss_pred EeCCcccccc
Confidence 9999999653
No 251
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=93.57 E-value=0.2 Score=59.77 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=52.4
Q ss_pred CeEEEEECcccH-HHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHH--------HhhhcCCC
Q psy12466 193 LRVLIVTPSSLT-SNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY--------QTIVDTEF 262 (680)
Q Consensus 193 ~~~LIV~P~sl~-~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~--------~~l~~~~~ 262 (680)
-++||+||+--+ .+=.++++++.. ..++.++.|+.....+... ....+|+|+|-+++.... ..+. +.
T Consensus 82 ~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l 158 (742)
T TIGR03817 82 ATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA-REHARYVLTNPDMLHRGILPSHARWARFLR--RL 158 (742)
T ss_pred cEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH-hcCCCEEEEChHHHHHhhccchhHHHHHHh--cC
Confidence 479999996554 566777887752 3456666666543322222 234689999999885321 1122 46
Q ss_pred cEEEEcCCCCCCC
Q psy12466 263 DLLICDEKSLLKP 275 (680)
Q Consensus 263 ~~vI~DEaH~lKN 275 (680)
++||+||+|++..
T Consensus 159 ~~vViDEah~~~g 171 (742)
T TIGR03817 159 RYVVIDECHSYRG 171 (742)
T ss_pred CEEEEeChhhccC
Confidence 8899999999865
No 252
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.55 E-value=1.3 Score=49.89 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.|...+..|.+.+.. ..-+...++.-+.|.|||..|..++..+...
T Consensus 22 GQe~iv~~L~~~i~~--~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 22 HQDLAIGALQNALKS--GKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred ChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 466666555443211 1112235899999999999999998877654
No 253
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.50 E-value=0.083 Score=62.53 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=53.0
Q ss_pred eEEEEECccc-HHHHHHHHHHHhCC--CCeeEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCCcEEE
Q psy12466 194 RVLIVTPSSL-TSNWNDEFKKWLGL--TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLI 266 (680)
Q Consensus 194 ~~LIV~P~sl-~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI 266 (680)
++||++|+.. ..|..+.|++|++. .++..++|+....... .......+|+|.|.+.+.... .+ .+.++||
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v-~~--~~l~lvV 388 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV-EF--HNLGLVI 388 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc-hh--cccceEE
Confidence 7899999766 56899999999864 4555666654322211 223345789999988774321 12 3578999
Q ss_pred EcCCCCC
Q psy12466 267 CDEKSLL 273 (680)
Q Consensus 267 ~DEaH~l 273 (680)
+||+|++
T Consensus 389 IDE~Hrf 395 (681)
T PRK10917 389 IDEQHRF 395 (681)
T ss_pred Eechhhh
Confidence 9999997
No 254
>PRK06526 transposase; Provisional
Probab=93.46 E-value=0.47 Score=49.10 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=25.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.+.+|.-.+|+|||..+.++...+...+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 357789999999999999999988777655
No 255
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=93.41 E-value=0.14 Score=59.73 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=51.6
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHH--HHHhhhcCCCcEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~--~~~~l~~~~~~~v 265 (680)
..+|||+|. +|+.+|.+.+... + .....+.+....... .........+++++-|.+.. ....+...+++++
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~-g-i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~i 143 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLAN-G-VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALL 143 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHc-C-CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEE
Confidence 368999995 5566787887764 2 333333333221111 11223456788899888753 3445666789999
Q ss_pred EEcCCCCCCCC
Q psy12466 266 ICDEKSLLKPP 276 (680)
Q Consensus 266 I~DEaH~lKN~ 276 (680)
|+||||.+-.+
T Consensus 144 VIDEaH~i~~~ 154 (607)
T PRK11057 144 AVDEAHCISQW 154 (607)
T ss_pred EEeCccccccc
Confidence 99999998754
No 256
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.38 E-value=0.32 Score=51.21 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
+.+.+|.-++|+|||..|.+++..+...+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34678889999999999988888877654
No 257
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.21 E-value=1.3 Score=49.35 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=72.4
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHH-hcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~-~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
+-.++.-..|.|||.+++.++..+. ..+. .++.+|.-..--..=.+++..|.....+.++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g------~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~------------ 283 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGK------KKVALITLDTYRIGAVEQLKTYAKIMGIPVEV------------ 283 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCC------CeEEEEECCccHHHHHHHHHHHHHHhCCceEc------------
Confidence 3456667899999999998888776 3321 23555554321000012333332211111111
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc------ccceEEEEeCCCCCCCHHHHHHH
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL------NIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l------~~~~rllLTgTP~~n~~~el~sl 550 (680)
..+...+...+..+. .+|+||||-+-+...... ....+..+ .....++|++|.-.+.+.+++..
T Consensus 284 -------~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~-~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 284 -------VYDPKELAKALEQLR--DCDVILIDTAGRSQRDKR-LIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred -------cCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHH-HHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 112222333333333 589999999876533222 22222222 23457999999988888888888
Q ss_pred HhhhCCC
Q psy12466 551 NDFANPG 557 (680)
Q Consensus 551 l~fl~p~ 557 (680)
+..+.+.
T Consensus 354 f~~~~~~ 360 (424)
T PRK05703 354 FSRLPLD 360 (424)
T ss_pred hCCCCCC
Confidence 8877653
No 258
>KOG1131|consensus
Probab=93.19 E-value=0.72 Score=51.20 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=43.9
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch--HHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL--TSNWNDEF 451 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl--l~qW~~E~ 451 (680)
.+|-|.. +|.+-- ..-..++.|+|-...|+|||+.-++++..+....|.. -+-||-|...+ +..-..|+
T Consensus 17 iYPEQ~~---YM~elK--rsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~----~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 17 IYPEQYE---YMRELK--RSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE----HRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred cCHHHHH---HHHHHH--HhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc----cceEEEecCcchHHHHHHHHH
Confidence 5666654 444321 1224567899999999999999999887776655431 12477787543 34444444
Q ss_pred H
Q psy12466 452 K 452 (680)
Q Consensus 452 ~ 452 (680)
+
T Consensus 88 ~ 88 (755)
T KOG1131|consen 88 K 88 (755)
T ss_pred H
Confidence 3
No 259
>KOG0337|consensus
Probab=93.17 E-value=0.17 Score=54.59 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=78.5
Q ss_pred cCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHH---HHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 404 DEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNW---NDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 404 DemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW---~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
.-+|.|||..-+. .+..++... . ..-+.||+.|+ -|..|- ..++.+++..-..+.+++.+..... .....
T Consensus 65 artgsgktaaf~ipm~e~Lk~~s-~---~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf-~~l~~ 139 (529)
T KOG0337|consen 65 ARTGSGKTAAFLIPMIEKLKSHS-Q---TGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQF-ILLNE 139 (529)
T ss_pred eecCCcchhhHHHHHHHHHhhcc-c---cccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHH-HHhcc
Confidence 4589999976433 333343332 1 12368999997 454544 4455555554445555655433322 22334
Q ss_pred CCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccC--cccHHHHHHHhccc-ceEEEEeCCC
Q psy12466 479 VSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKN--GKSKLYELMTGLNI-RKRILLSGTP 539 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn--~~s~~~~~l~~l~~-~~rllLTgTP 539 (680)
..|++|+|...+...... +.-....+||+|||.++-. ..-+..+.+.++.. .-.+++|||-
T Consensus 140 npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 140 NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred CCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 678999888766422111 2223477999999999833 45667777778743 4579999995
No 260
>KOG0924|consensus
Probab=92.98 E-value=0.25 Score=56.25 Aligned_cols=148 Identities=23% Similarity=0.311 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-------chHHHHHHHHHHHhCCCCeeEeecCCc
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-------SLTSNWNDEFKKWLGLTRMCPYHVNQK 468 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-------sll~qW~~E~~~~~~~~~v~~~~~~~~ 468 (680)
.+.-.|+.-|+|.|||.|.--++. ..|- +.. -+|.|.. ++...-.+|+.--.+.. |. |.
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~---edGY-~~~----GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~-VG-Ys---- 435 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLY---EDGY-ADN----GMIGCTQPRRVAAISVAKRVAEEMGVTLGDT-VG-YS---- 435 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHH---hccc-ccC----CeeeecCchHHHHHHHHHHHHHHhCCccccc-cc-eE----
Confidence 456788999999999999765553 3321 111 2666642 22234444443222221 10 00
Q ss_pred chhhhhhhcCCCCEEEEeHHHHHHH-HHhhhccCceEEEEcCcccccCcccHHHHHHHhcccce----EEEEeCCCCCCC
Q psy12466 469 NKAEDYVYSRVSPVLIISYEMLIRA-YQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK----RILLSGTPLQND 543 (680)
Q Consensus 469 ~~~~~~~~~~~~~vvI~ty~~l~~~-~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~----rllLTgTP~~n~ 543 (680)
.+.++.- .....|=.+|-..+.+. +..-.-.++.+||+||||.=.-..-...-.++...+++ .++.|||.--..
T Consensus 436 IRFEdvT-~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~k 514 (1042)
T KOG0924|consen 436 IRFEDVT-SEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQK 514 (1042)
T ss_pred EEeeecC-CCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHH
Confidence 0000000 01122334444444332 11111236889999999963222222333333333333 378889987777
Q ss_pred HHHHHH-HHhhhCCCC
Q psy12466 544 LQEFFY-LNDFANPGV 558 (680)
Q Consensus 544 ~~el~s-ll~fl~p~~ 558 (680)
+.++|. .=.|--|+.
T Consensus 515 f~nfFgn~p~f~IpGR 530 (1042)
T KOG0924|consen 515 FSNFFGNCPQFTIPGR 530 (1042)
T ss_pred HHHHhCCCceeeecCC
Confidence 777776 334555554
No 261
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=92.95 E-value=0.35 Score=52.63 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=51.4
Q ss_pred eEEEEECc-ccHHHHHHHHHHHh----CCCCeeEEeecCCcchh--hh--------------------cccCCCCEEEEe
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWL----GLTRMCPYHVNQKNKAE--DY--------------------VYSRVSPVLIIS 246 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~----~~~~~~~~~~~~~~~~~--~~--------------------~~~~~~~V~its 246 (680)
++++++|. +|..+|.+.+++++ +...+.+.+.++..... .. .......+++|+
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~ 120 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTN 120 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEec
Confidence 57999995 46788888888887 22344444444431110 00 011245689999
Q ss_pred hhHHHHHHHhh---h-------cCCCcEEEEcCCCCCCCC
Q psy12466 247 YEMLIRAYQTI---V-------DTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 247 Ye~l~~~~~~l---~-------~~~~~~vI~DEaH~lKN~ 276 (680)
++++....... . -...++||+||+|.+...
T Consensus 121 p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~ 160 (357)
T TIGR03158 121 PDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAK 160 (357)
T ss_pred HHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcc
Confidence 99986533211 0 135799999999999753
No 262
>PRK14701 reverse gyrase; Provisional
Probab=92.94 E-value=0.2 Score=64.23 Aligned_cols=83 Identities=17% Similarity=0.367 Sum_probs=57.0
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCC----CCeeEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCCc
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGL----TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFD 263 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~~ 263 (680)
.++|||+|+. |+.|..+.|++++.. .++..++++.....+. ......++|+|+|=+.+......+....++
T Consensus 123 ~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~ 202 (1638)
T PRK14701 123 KKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFD 202 (1638)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCC
Confidence 4799999965 467899999998742 2334444443322221 122345789999999887666555557799
Q ss_pred EEEEcCCCCCCC
Q psy12466 264 LLICDEKSLLKP 275 (680)
Q Consensus 264 ~vI~DEaH~lKN 275 (680)
++|+||||++-.
T Consensus 203 ~iVVDEAD~ml~ 214 (1638)
T PRK14701 203 FIFVDDVDAFLK 214 (1638)
T ss_pred EEEEECceeccc
Confidence 999999998853
No 263
>KOG0326|consensus
Probab=92.93 E-value=0.24 Score=51.58 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=78.3
Q ss_pred ceEEE-cCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHHHHHHHhCCCCeeEeecCCcchhh
Q psy12466 399 GAILA-DEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWNDEFKKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 399 g~iLa-DemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~ 472 (680)
.-||| .--|+|||-.- |-.+..+..... .=-.+|++|. .+. +|-..++.++++ ..+.+..|...-+.+
T Consensus 123 rdiLaRaKNGTGKT~a~~IP~Lekid~~~~-----~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDD 196 (459)
T KOG0326|consen 123 RDILARAKNGTGKTAAYCIPVLEKIDPKKN-----VIQAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDD 196 (459)
T ss_pred hhhhhhccCCCCCccceechhhhhcCcccc-----ceeEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccc
Confidence 34555 56799999653 223322222111 1126899996 332 677788888777 455555554443333
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcccH--HHHHHHhc-ccceEEEEeCCC
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGKSK--LYELMTGL-NIRKRILLSGTP 539 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~s~--~~~~l~~l-~~~~rllLTgTP 539 (680)
-........++|.|...+....+.-. -....++|+|||..+-....+ ..+.+.-+ +.+..++.|||-
T Consensus 197 I~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATF 268 (459)
T KOG0326|consen 197 IMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATF 268 (459)
T ss_pred eeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEeccc
Confidence 22233456688999888765543311 124678999999998654332 33344444 455668888884
No 264
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.91 E-value=0.22 Score=58.90 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=53.3
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCCeeEEeecCCcchhh--hc--ccCCCCEEEEehhHHHHHHHhhhcCCCcEEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTRMCPYHVNQKNKAED--YV--YSRVSPVLIISYEMLIRAYQTIVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~ 267 (680)
+++||+||.. |..+|.+.|+++++ .++.++++........ +. .....+|+|.|.+.+. +.-.++++||+
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-----~p~~~l~liVv 264 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARFG-APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-----LPFKNLGLIIV 264 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhC-CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-----ccccCCCEEEE
Confidence 5799999965 67899999999887 5777777764432222 11 2245689999987652 11235899999
Q ss_pred cCCCCCC
Q psy12466 268 DEKSLLK 274 (680)
Q Consensus 268 DEaH~lK 274 (680)
||+|...
T Consensus 265 DEeh~~s 271 (679)
T PRK05580 265 DEEHDSS 271 (679)
T ss_pred ECCCccc
Confidence 9999653
No 265
>KOG0989|consensus
Probab=92.89 E-value=0.37 Score=50.32 Aligned_cols=44 Identities=23% Similarity=0.149 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
+|...|.-|.+.+.. .....-++--.+|+|||-++.+|+..+..
T Consensus 40 gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 798889888776432 45566788889999999999999988765
No 266
>PHA02533 17 large terminase protein; Provisional
Probab=92.85 E-value=0.74 Score=52.75 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=76.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~ 451 (680)
.|+|+|++-+..|.. ++-.++.-.=..|||..+.+++....-..+ ...+++++|..-. ..=-+.+
T Consensus 59 ~L~p~Q~~i~~~~~~---------~R~~ii~~aRq~GKStl~a~~al~~a~~~~-----~~~v~i~A~~~~QA~~vF~~i 124 (534)
T PHA02533 59 QMRDYQKDMLKIMHK---------NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-----DKNVGILAHKASMAAEVLDRT 124 (534)
T ss_pred CCcHHHHHHHHHHhc---------CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHH
Confidence 488999998877632 233466677789999988766544433222 1258888885211 1111333
Q ss_pred HHHh---CCC-CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHh-
Q psy12466 452 KKWL---GLT-RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG- 526 (680)
Q Consensus 452 ~~~~---~~~-~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~- 526 (680)
+... |.. ...+.. ... ..........|.+.+-+ .+.......+++|+||+|.+++.. ....++..
T Consensus 125 k~~ie~~P~l~~~~i~~-~~~---~~I~l~NGS~I~~lss~-----~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~ 194 (534)
T PHA02533 125 KQAIELLPDFLQPGIVE-WNK---GSIELENGSKIGAYASS-----PDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPV 194 (534)
T ss_pred HHHHHhCHHHhhcceee-cCc---cEEEeCCCCEEEEEeCC-----CCccCCCCCceEEEeccccCCCHH-HHHHHHHHH
Confidence 3222 221 100000 000 00101112222222211 233456678899999999987643 23333322
Q ss_pred cc--cceEEEEeCCCC-CCCHHHHHH
Q psy12466 527 LN--IRKRILLSGTPL-QNDLQEFFY 549 (680)
Q Consensus 527 l~--~~~rllLTgTP~-~n~~~el~s 549 (680)
+. ...++.+..||- .|+.-++|.
T Consensus 195 lasg~~~r~iiiSTp~G~n~fye~~~ 220 (534)
T PHA02533 195 ISSGRSSKIIITSTPNGLNHFYDIWT 220 (534)
T ss_pred HHcCCCceEEEEECCCchhhHHHHHH
Confidence 22 224688888884 244444443
No 267
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=92.83 E-value=0.083 Score=58.32 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=73.7
Q ss_pred eEEEEEC-cccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEEEc
Q psy12466 194 RVLIVTP-SSLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICD 268 (680)
Q Consensus 194 ~~LIV~P-~sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI~D 268 (680)
++|+++| .-|+.|=..-|.+.++ ...+..+.|.-....+...| ....|++.|=.++.++.. .+.-..+.++|+|
T Consensus 60 kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifD 138 (542)
T COG1111 60 KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFD 138 (542)
T ss_pred eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEec
Confidence 6788888 4667777778888874 35566666665554444443 356899999999988764 4555679999999
Q ss_pred CCCCCCCCCCCCCccccCCCCCCceeccCCCCCCCCC
Q psy12466 269 EKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKR 305 (680)
Q Consensus 269 EaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~~~~~~~ 305 (680)
||||----.+-..-|-.-++......+.|+.+.|-..
T Consensus 139 EAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~ 175 (542)
T COG1111 139 EAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSD 175 (542)
T ss_pred hhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCC
Confidence 9999754444443333344555555566666666544
No 268
>PRK05642 DNA replication initiation factor; Validated
Probab=92.81 E-value=1.3 Score=45.15 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=21.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
...+|.-+.|+|||.-+-+++..+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~ 72 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 567899999999999988877666544
No 269
>CHL00181 cbbX CbbX; Provisional
Probab=92.79 E-value=0.49 Score=49.88 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.1
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.+|.-.+|+|||..|-+++..+...+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3468899999999999999988776554
No 270
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.78 E-value=0.85 Score=54.58 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=74.6
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHH-HHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTS-NWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~-qW~~E 450 (680)
..|-+-|++++..+.. ..+-.+|....|+|||..+-+++..+...+. ++++++|+.... ...+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~--------s~~~~il~G~aGTGKTtll~~i~~~~~~~g~-------~V~~~ApTg~Aa~~L~~~ 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG--------SGDIAVVVGRAGTGKSTMLKAAREAWEAAGY-------RVIGAALSGKAAEGLQAE 415 (744)
T ss_pred CCCCHHHHHHHHHHhc--------CCCEEEEEecCCCCHHHHHHHHHHHHHhCCC-------eEEEEeCcHHHHHHHHhc
Confidence 3578899999987743 1346789999999999888877766665542 588899986553 23221
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccCcccHHHHHHHhc-
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKNGKSKLYELMTGL- 527 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l- 527 (680)
.+. ... |-..+..... ...-...++||+|||..+.. ....+.+...
T Consensus 416 ----~g~---------~a~----------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~--~~~~~Ll~~~~ 464 (744)
T TIGR02768 416 ----SGI---------ESR----------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS--RQMARVLKEAE 464 (744)
T ss_pred ----cCC---------cee----------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH--HHHHHHHHHHH
Confidence 110 000 0000100000 00123678999999998843 3333444322
Q ss_pred ccceEEEEeCCCCCC
Q psy12466 528 NIRKRILLSGTPLQN 542 (680)
Q Consensus 528 ~~~~rllLTgTP~~n 542 (680)
....+++|-|=|-|-
T Consensus 465 ~~~~kliLVGD~~QL 479 (744)
T TIGR02768 465 EAGAKVVLVGDPEQL 479 (744)
T ss_pred hcCCEEEEECChHHc
Confidence 466789999966544
No 271
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.75 E-value=1 Score=48.34 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=34.9
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.++..++..+..-+... ...+.+.+|.-++|+|||..+.|++..+...+
T Consensus 161 ~~~~~~~~~~~~~~f~~~f-~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENF-DKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred HHHHHHHHHHHHHHHHHHH-hccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 4445556665444322212 23457888999999999999999999888765
No 272
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.68 E-value=3.5 Score=46.71 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=29.7
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...++.+.+.+.. ..-.+.-++.-..|+|||..|..++..+...
T Consensus 18 Qe~vv~~L~~a~~~--~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 18 QDVLVRILRNAFTL--NKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred cHHHHHHHHHHHHc--CCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 55555555443211 2234568889999999999998888766543
No 273
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.63 E-value=0.32 Score=47.17 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=37.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHH
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 454 (680)
.++.-++|+|||..++.++......+. +++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~-------~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE-------PGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC-------cEEEEECCCCHHHHHHHHHHc
Confidence 367889999999999999888776553 489998877777766666554
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.59 E-value=0.78 Score=47.47 Aligned_cols=50 Identities=34% Similarity=0.419 Sum_probs=39.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
.+.+.+|.-.+|.|||..++|+...+...+. +++++.-+.++.+++..+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~-------sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI-------SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC-------eEEEEEHHHHHHHHHHHHh
Confidence 6788999999999999999999999985543 4777766667766666554
No 275
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=92.48 E-value=0.65 Score=55.14 Aligned_cols=119 Identities=20% Similarity=0.215 Sum_probs=69.1
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~ 449 (680)
.++-|.-|.--|. .|.|--..+|=|||++|..-+....-.| +.+-||+.+ .|. ..|..
T Consensus 79 ~ydVQliGglvLh-----------~G~IAEMkTGEGKTLvAtLpayLnAL~G-------kgVhVVTvNdYLA~RDae~mg 140 (925)
T PRK12903 79 PYDVQIIGGIILD-----------LGSVAEMKTGEGKTITSIAPVYLNALTG-------KGVIVSTVNEYLAERDAEEMG 140 (925)
T ss_pred cCchHHHHHHHHh-----------cCCeeeecCCCCccHHHHHHHHHHHhcC-------CceEEEecchhhhhhhHHHHH
Confidence 4455776664442 4667778999999998654332222222 237777776 444 78999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHH---------HhhhccCceEEEEcCcccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY---------QTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~---------~~l~~~~~~~vIlDEaH~~ 513 (680)
.+-+|++.. +.+.............+ .++|+-+|-..|.-++ +......++++|+||+..+
T Consensus 141 ~vy~fLGLs-vG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 141 KVFNFLGLS-VGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred HHHHHhCCc-eeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 999998853 33332221111111112 3677766655543321 2233457888999998876
No 276
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.45 E-value=0.88 Score=49.39 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=31.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|.+++..+...+.. ....+.-++.-+.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~--grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYRE--GKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHc--CCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 45556666554321 1223357788999999999999999888763
No 277
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=92.44 E-value=0.25 Score=53.60 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=52.9
Q ss_pred CCeEEEEEC-cccHHHHHHHHHHHhCCCCeeEEeecCCcch-----------hhh---cc----cCCCCEEEEehhHHHH
Q psy12466 192 ILRVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA-----------EDY---VY----SRVSPVLIISYEMLIR 252 (680)
Q Consensus 192 ~~~~LIV~P-~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~-----------~~~---~~----~~~~~V~itsYe~l~~ 252 (680)
..++++|+| .+|+.++.+.+..+++. .+..+++...... ... .. ....+|+++|.+.+..
T Consensus 29 ~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~ 107 (358)
T TIGR01587 29 ADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLK 107 (358)
T ss_pred CCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHH
Confidence 458999999 56788999999998863 4444444321000 000 00 1235799999998765
Q ss_pred HHHh--------hhcCCCcEEEEcCCCCCCC
Q psy12466 253 AYQT--------IVDTEFDLLICDEKSLLKP 275 (680)
Q Consensus 253 ~~~~--------l~~~~~~~vI~DEaH~lKN 275 (680)
.... +......+||+||+|.+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~ 138 (358)
T TIGR01587 108 SVFGEFGHYEFTLASIANSLLIFDEVHFYDE 138 (358)
T ss_pred HHhcccchHHHHHHHhcCCEEEEeCCCCCCH
Confidence 4332 2233457899999999875
No 278
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.40 E-value=0.57 Score=48.42 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~ 422 (680)
.+.+++..+...+ ....+-.+|.-+.|+|||..+-.++..+.
T Consensus 27 ~~~~~~~~l~~~~----~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 27 GHKRAMAYLEYGL----SQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHHH----hcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4455666554321 12233477899999999988877765543
No 279
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=92.38 E-value=0.62 Score=56.06 Aligned_cols=141 Identities=20% Similarity=0.210 Sum_probs=78.1
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWNDE 450 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~E 450 (680)
++-|.-|---|. .|-|-=..+|=|||++|..-+....-.|. .+-||+.+ .|. ..|...
T Consensus 140 ydVQLiGgivLh-----------~G~IAEM~TGEGKTLvatlp~yLnAL~G~-------gVHvVTvNDYLA~RDaewm~p 201 (1025)
T PRK12900 140 YDVQLIGGIVLH-----------SGKISEMATGEGKTLVSTLPTFLNALTGR-------GVHVVTVNDYLAQRDKEWMNP 201 (1025)
T ss_pred cchHHhhhHHhh-----------cCCccccCCCCCcchHhHHHHHHHHHcCC-------CcEEEeechHhhhhhHHHHHH
Confidence 345776664442 45666689999999987533322222221 25666665 555 889999
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHH-----HHH----HHhhhccCceEEEEcCcccccCcccHHH
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRA----YQTIVDTEFDLLICDEGHRLKNGKSKLY 521 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l-----~~~----~~~l~~~~~~~vIlDEaH~~kn~~s~~~ 521 (680)
+-+|++.. |.+.........+.. .-.+||+-+|-..| +.+ .+.+....+.+.|+||+..+-=
T Consensus 202 ~y~flGLt-Vg~i~~~~~~~~Rr~--aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLI------ 272 (1025)
T PRK12900 202 VFEFHGLS-VGVILNTMRPEERRE--QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLI------ 272 (1025)
T ss_pred HHHHhCCe-eeeeCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhh------
Confidence 99998854 333322211111111 12355555543333 222 2234456899999999985411
Q ss_pred HHHHhcccceEEEEeCCCCCCCHHHHH
Q psy12466 522 ELMTGLNIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 522 ~~l~~l~~~~rllLTgTP~~n~~~el~ 548 (680)
. .++.-+++||. +.+...++|
T Consensus 273 ---D--eARTPLIISgp-~~~~~~~~y 293 (1025)
T PRK12900 273 ---D--EARTPLIISGP-VPNADNSKF 293 (1025)
T ss_pred ---c--cccCceEEeCC-CCCcchHHH
Confidence 1 34455889984 334334333
No 280
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.37 E-value=2.1 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.6
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.-||.-..|+|||..+..|+..+.-
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3578899999999999999988764
No 281
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.43 Score=54.31 Aligned_cols=98 Identities=20% Similarity=0.212 Sum_probs=65.6
Q ss_pred ccCcccHHHHHHHHHhhhhh---ccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDL---ASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWND 449 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~---~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~ 449 (680)
..+...++++.|.+.+.... ......|.+|+-.+|+|||+.|-+++..... +++-|-...++..|.-
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~----------~fi~v~~~~l~sk~vG 318 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS----------RFISVKGSELLSKWVG 318 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC----------eEEEeeCHHHhccccc
Confidence 35567778888877763211 1245668999999999999999888863221 2444444488899988
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
|..+-. +.....-......+|++||...+..
T Consensus 319 esek~i-----------------------------------r~~F~~A~~~~p~iiFiDEiDs~~~ 349 (494)
T COG0464 319 ESEKNI-----------------------------------RELFEKARKLAPSIIFIDEIDSLAS 349 (494)
T ss_pred hHHHHH-----------------------------------HHHHHHHHcCCCcEEEEEchhhhhc
Confidence 877631 1222223356788999999998844
No 282
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=92.23 E-value=0.5 Score=56.55 Aligned_cols=141 Identities=21% Similarity=0.246 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-----HHHHHHHHHHhCCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-----SNWNDEFKKWLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-----~qW~~E~~~~~~~~~v~~~~~~~~~~ 470 (680)
.+.-.||.-++|.|||.|.=.++....-.+ .+.+.+.=|.-+. .-=.+|+..-.+. .|. |.. +
T Consensus 64 ~~~vvii~getGsGKTTqlP~~lle~g~~~------~g~I~~tQPRRlAArsvA~RvAeel~~~~G~-~VG-Y~i----R 131 (845)
T COG1643 64 QNQVVIIVGETGSGKTTQLPQFLLEEGLGI------AGKIGCTQPRRLAARSVAERVAEELGEKLGE-TVG-YSI----R 131 (845)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHHhhhccc------CCeEEecCchHHHHHHHHHHHHHHhCCCcCc-eee-EEE----E
Confidence 357899999999999999877665443211 1223444443222 2233333322221 111 111 1
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHH-hhhccCceEEEEcCcccccCcccHHHH-HHHh----ccc-ceEEEEeCCCCCCC
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEGHRLKNGKSKLYE-LMTG----LNI-RKRILLSGTPLQND 543 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~-~l~~~~~~~vIlDEaH~~kn~~s~~~~-~l~~----l~~-~~rllLTgTP~~n~ 543 (680)
.++.. .....+-++|=..|.+.+. ...-..+++||+||+|.= +-++...- .+.. .+. -+.++||||-=...
T Consensus 132 fe~~~-s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER-Sl~tDilLgllk~~~~~rr~DLKiIimSATld~~r 209 (845)
T COG1643 132 FESKV-SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER-SLNTDILLGLLKDLLARRRDDLKLIIMSATLDAER 209 (845)
T ss_pred eeccC-CCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhh-hHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHH
Confidence 11110 1234577788888776543 222346999999999951 11222211 1222 232 34599999986666
Q ss_pred HHHHHHH
Q psy12466 544 LQEFFYL 550 (680)
Q Consensus 544 ~~el~sl 550 (680)
+..++.-
T Consensus 210 fs~~f~~ 216 (845)
T COG1643 210 FSAYFGN 216 (845)
T ss_pred HHHHcCC
Confidence 6666553
No 283
>KOG0991|consensus
Probab=92.20 E-value=0.2 Score=50.20 Aligned_cols=128 Identities=15% Similarity=0.170 Sum_probs=68.2
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
.+-.+-|++-.+|.|||..+.++++.+....- ++.+.+. .. +..
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~---------------------ke~vLEL---------NA-Sde----- 89 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDSY---------------------KEAVLEL---------NA-SDE----- 89 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChhh---------------------hhHhhhc---------cC-ccc-----
Confidence 45678999999999999999999988765321 1111111 11 111
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-ccceEEEEeCCCCCCCHHHHHHHHhh
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NIRKRILLSGTPLQNDLQEFFYLNDF 553 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~~~rllLTgTP~~n~~~el~sll~f 553 (680)
+.-|||=..-.+|....-.+...+...||+|||..+.....+..+..+.+ ....|++|----...-.+-+.|-+..
T Consensus 90 ---RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAi 166 (333)
T KOG0991|consen 90 ---RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAI 166 (333)
T ss_pred ---cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHh
Confidence 11122222233333333345556789999999998866555555544444 33444444332222222224444445
Q ss_pred hCCCCCCC
Q psy12466 554 ANPGVLGS 561 (680)
Q Consensus 554 l~p~~l~~ 561 (680)
|+-..+.+
T Consensus 167 LRysklsd 174 (333)
T KOG0991|consen 167 LRYSKLSD 174 (333)
T ss_pred hhhcccCH
Confidence 54444443
No 284
>KOG0920|consensus
Probab=92.16 E-value=1.5 Score=52.81 Aligned_cols=163 Identities=21% Similarity=0.204 Sum_probs=87.6
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc--chH--HHHHHHHHHHhCCCCeeEeecCCcchhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS--SLT--SNWNDEFKKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~--sll--~qW~~E~~~~~~~~~v~~~~~~~~~~~~ 472 (680)
..-.++.-|+|.|||.|+-.++........ ...++++-=|. +.+ .++...=. ..+....+-|...-..+.
T Consensus 188 ~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----~~~~IicTQPRRIsAIsvAeRVa~ER-~~~~g~~VGYqvrl~~~~- 261 (924)
T KOG0920|consen 188 NQVVVISGETGCGKTTQVPQFILDEAIESG----AACNIICTQPRRISAISVAERVAKER-GESLGEEVGYQVRLESKR- 261 (924)
T ss_pred CceEEEeCCCCCCchhhhhHHHHHHHHhcC----CCCeEEecCCchHHHHHHHHHHHHHh-ccccCCeeeEEEeeeccc-
Confidence 477899999999999999998876654332 12333444443 233 44432211 111112222222111111
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhhh-ccCceEEEEcCcccccCcccH-HHHHHHhc----ccceEEEEeCCCCCCCHHH
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTIV-DTEFDLLICDEGHRLKNGKSK-LYELMTGL----NIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l~-~~~~~~vIlDEaH~~kn~~s~-~~~~l~~l----~~~~rllLTgTP~~n~~~e 546 (680)
.....+..+|+..+.+...... -.....||+||+|.= +-++. +.-.++.+ ..-+.++||||---..+.+
T Consensus 262 ----s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER-~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~ 336 (924)
T KOG0920|consen 262 ----SRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHER-SINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSD 336 (924)
T ss_pred ----CCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEc-cCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHH
Confidence 1125688899998876553311 135789999999962 22333 22333333 3335699999997656666
Q ss_pred HHHHHhhh-CCCC-CCCHHHHHHHhh
Q psy12466 547 FFYLNDFA-NPGV-LGSLREFRKNFE 570 (680)
Q Consensus 547 l~sll~fl-~p~~-l~~~~~F~~~f~ 570 (680)
.|.....+ -|++ |+-...|.+.+.
T Consensus 337 YF~~~pvi~i~grtfpV~~~fLEDil 362 (924)
T KOG0920|consen 337 YFGGCPVITIPGRTFPVKEYFLEDIL 362 (924)
T ss_pred HhCCCceEeecCCCcchHHHHHHHHH
Confidence 65533333 2343 333445544443
No 285
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.15 E-value=1.4 Score=49.47 Aligned_cols=101 Identities=22% Similarity=0.332 Sum_probs=59.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
...+|.-..|+|||..+-+++..+....+. .+++.+....+...+...+..-
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~-----~~v~yi~~~~~~~~~~~~~~~~----------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPN-----AKVVYVTSEKFTNDFVNALRNN----------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCC-----CeEEEEEHHHHHHHHHHHHHcC-----------------------
Confidence 457899999999999999999888765431 2355554444444443333210
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCccc---HHHHHHHhc-ccceEEEEeCCC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKS---KLYELMTGL-NIRKRILLSGTP 539 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s---~~~~~l~~l-~~~~rllLTgTP 539 (680)
+.+.+.. .+. ..+++||||.|.+.+... ..+..+..+ .....+++|++-
T Consensus 201 --------~~~~~~~---~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 201 --------TMEEFKE---KYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred --------cHHHHHH---HHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 1122222 222 488999999999865432 223333333 233457777764
No 286
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.08 E-value=3 Score=45.24 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=32.6
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|..|.+.+...+.... .....++.++.-+.|+|||..+-+++..+...
T Consensus 20 Re~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 20 RDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred cHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5566666654444321 12344678889999999999998888877543
No 287
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.00 E-value=1.8 Score=47.18 Aligned_cols=45 Identities=20% Similarity=0.094 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
-|...+..+.+.+.. ..-.+..++.-+.|+|||..|-+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~--~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSL--GRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHc--CCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 466666665554321 112233489999999999999999887753
No 288
>KOG0350|consensus
Probab=91.80 E-value=0.27 Score=54.23 Aligned_cols=85 Identities=21% Similarity=0.277 Sum_probs=58.7
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhh---hcccCC----CCEEEEehhHHHHHHHhhhc---CC
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAED---YVYSRV----SPVLIISYEMLIRAYQTIVD---TE 261 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~V~itsYe~l~~~~~~l~~---~~ 261 (680)
=|+|||+|+-. +.|-.++|.+|++..-+.+-...+..+..+ .+.... .+|+|++=+.+..+...... .+
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 48899999765 568999999999765555554444443332 222222 38999999999887764222 23
Q ss_pred CcEEEEcCCCCCCCCC
Q psy12466 262 FDLLICDEKSLLKPPS 277 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~~ 277 (680)
-.++|+|||.||-+-.
T Consensus 296 LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 296 LRFLVIDEADRLLDQS 311 (620)
T ss_pred ceEEEechHHHHHHHH
Confidence 5569999999997643
No 289
>PRK08181 transposase; Validated
Probab=91.78 E-value=1.6 Score=45.50 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=32.9
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
+...|..++..+... ...+.+.+|.-.+|+|||..+.+++..+...+
T Consensus 88 ~~~~~~~~L~~~~~~-----~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g 134 (269)
T PRK08181 88 VSKAQVMAIAAGDSW-----LAKGANLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred CCHHHHHHHHHHHHH-----HhcCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence 444566666443211 12457799999999999999999988777665
No 290
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.74 E-value=4.9 Score=47.21 Aligned_cols=46 Identities=22% Similarity=0.132 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..|.+.+.. ..-.+.-|+.-..|+|||..+.+++..+...
T Consensus 20 GQe~vv~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 20 GQEHVVKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CcHHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 355555555443211 1123445889999999999999998876544
No 291
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.73 E-value=0.39 Score=55.44 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=102.4
Q ss_pred cccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHH
Q psy12466 368 GFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSN 446 (680)
Q Consensus 368 ~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~q 446 (680)
........|||++-.+.|-. ..-....+.-..-+|||..++.++.+.....| .++|++.|+ .....
T Consensus 11 G~w~~~~~Py~~eimd~~~~-------~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P------~~~l~v~Pt~~~a~~ 77 (557)
T PF05876_consen 11 GPWRTDRTPYLREIMDALSD-------PSVREVVVMKSAQVGKTELLLNWIGYSIDQDP------GPMLYVQPTDDAAKD 77 (557)
T ss_pred CCCCCCCChhHHHHHHhcCC-------cCccEEEEEEcchhhHhHHHHhhceEEEEeCC------CCEEEEEEcHHHHHH
Confidence 33455678999988877632 33567888888999999988888877776665 469999998 56677
Q ss_pred HHHH-HHHHh---CCCCeeEeecCCcchhhh--hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc----cCc
Q psy12466 447 WNDE-FKKWL---GLTRMCPYHVNQKNKAED--YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL----KNG 516 (680)
Q Consensus 447 W~~E-~~~~~---~~~~v~~~~~~~~~~~~~--~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~----kn~ 516 (680)
|.++ |.-.+ |.++-.+.....+..... ........+.+.....- ..|.....+++++||...+ ++.
T Consensus 78 ~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~----~~l~s~~~r~~~~DEvD~~p~~~~~e 153 (557)
T PF05876_consen 78 FSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP----SNLRSRPARYLLLDEVDRYPDDVGGE 153 (557)
T ss_pred HHHHHHHHHHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCC----cccccCCcCEEEEechhhccccCccC
Confidence 7654 33332 322211111111111111 11112334555555432 3466778999999999987 334
Q ss_pred ccHHHHHHHhc---ccceEEEEeCCCCCCCHHHHHHH
Q psy12466 517 KSKLYELMTGL---NIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 517 ~s~~~~~l~~l---~~~~rllLTgTP~~n~~~el~sl 550 (680)
......+..+. ....++++..||-......+..+
T Consensus 154 Gdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 154 GDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred CCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 45555544443 46788999999987754444443
No 292
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.64 E-value=3.4 Score=48.22 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=30.9
Q ss_pred cHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 378 QRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
|...+..|.+.+. ...... -|+.-..|+|||..+..++..+...+
T Consensus 21 Qe~vv~~L~~~l~---~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~ 66 (618)
T PRK14951 21 QEHVVQALTNALT---QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQG 66 (618)
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 6666666555432 122233 47889999999999999998887543
No 293
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.52 E-value=1.8 Score=47.86 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=23.5
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
...+|.-..|+|||..+-+++..+....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~ 164 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENN 164 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 4568999999999999999988877653
No 294
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.43 E-value=1.4 Score=47.40 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=36.4
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
++|.|....+-+.++ ..-.+.-++.-..|+|||..|.+++..+.-..+
T Consensus 4 ~yPWl~~~~~~~~~~-----~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~ 51 (328)
T PRK05707 4 IYPWQQSLWQQLAGR-----GRHPHAYLLHGPAGIGKRALAERLAAALLCEAP 51 (328)
T ss_pred CCCCcHHHHHHHHHC-----CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 578888888877653 222345567889999999999999998876543
No 295
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.41 E-value=3.3 Score=39.61 Aligned_cols=138 Identities=13% Similarity=0.153 Sum_probs=67.4
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCC
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGL 457 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~ 457 (680)
|.+.+..+.+.+.. ..-...-|+.-+.|.||+..|.+++..+........ .|-.- .....+.. ..+
T Consensus 2 q~~~~~~L~~~~~~--~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~--------~c~~c---~~c~~~~~-~~~ 67 (162)
T PF13177_consen 2 QEEIIELLKNLIKS--GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED--------PCGEC---RSCRRIEE-GNH 67 (162)
T ss_dssp -HHHHHHHHHHHHC--TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT----------SSS---HHHHHHHT-T-C
T ss_pred cHHHHHHHHHHHHc--CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCC---HHHHHHHh-ccC
Confidence 55666666554321 122334577888999999999999998877654211 11110 01112221 111
Q ss_pred CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh----ccCceEEEEcCcccccCc-ccHHHHHHHhcccceE
Q psy12466 458 TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV----DTEFDLLICDEGHRLKNG-KSKLYELMTGLNIRKR 532 (680)
Q Consensus 458 ~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~----~~~~~~vIlDEaH~~kn~-~s~~~~~l~~l~~~~r 532 (680)
..+..+......+ ...-+.++.....+. ...+.++|+||||.+... .+.+.+.+..-...-+
T Consensus 68 ~d~~~~~~~~~~~-------------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~ 134 (162)
T PF13177_consen 68 PDFIIIKPDKKKK-------------SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTY 134 (162)
T ss_dssp TTEEEEETTTSSS-------------SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEE
T ss_pred cceEEEecccccc-------------hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEE
Confidence 2233332222111 011233333333322 235889999999998432 2334444444466777
Q ss_pred EEEeCCCCCC
Q psy12466 533 ILLSGTPLQN 542 (680)
Q Consensus 533 llLTgTP~~n 542 (680)
++|+.+-..+
T Consensus 135 fiL~t~~~~~ 144 (162)
T PF13177_consen 135 FILITNNPSK 144 (162)
T ss_dssp EEEEES-GGG
T ss_pred EEEEECChHH
Confidence 7777765443
No 296
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.30 E-value=0.98 Score=44.04 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=25.4
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..+.|.+|.-.+|+|||..|.+++..+...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g 75 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG 75 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC
Confidence 3567889999999999999999998888765
No 297
>PRK08727 hypothetical protein; Validated
Probab=91.22 E-value=1.2 Score=45.35 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=23.4
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
...+|.-..|+|||..+.+++......+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4588999999999999999888776654
No 298
>KOG0780|consensus
Probab=91.22 E-value=0.89 Score=48.93 Aligned_cols=98 Identities=21% Similarity=0.298 Sum_probs=61.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
.+++-=.|.|||.++.-++.++.+++. ++.+||-..--.---++++.+.-..++.+|........-
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~-------K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv------- 169 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGY-------KVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPV------- 169 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCC-------ceeEEeecccccchHHHHHHHhHhhCCeeEecccccchH-------
Confidence 455667899999999999999888874 355666544333333444554444555555532222211
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccH
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSK 519 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~ 519 (680)
.....-.+.+.+.+||+||+|=+-+.+-..+.
T Consensus 170 --------~ia~egv~~fKke~fdvIIvDTSGRh~qe~sL 201 (483)
T KOG0780|consen 170 --------KIASEGVDRFKKENFDVIIVDTSGRHKQEASL 201 (483)
T ss_pred --------HHHHHHHHHHHhcCCcEEEEeCCCchhhhHHH
Confidence 12234466778889999999999887655443
No 299
>KOG0734|consensus
Probab=91.21 E-value=1.7 Score=48.68 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=73.6
Q ss_pred HHHHHHHHh--hhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCC
Q psy12466 380 QGVSFLYER--VCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGL 457 (680)
Q Consensus 380 ~gv~~l~~~--~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~ 457 (680)
+-|.||.+= +..+...-..|.+|.-.+|+|||+.|=|++ |.
T Consensus 318 EiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvA------GE------------------------------- 360 (752)
T KOG0734|consen 318 EIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVA------GE------------------------------- 360 (752)
T ss_pred HHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhh------cc-------------------------------
Confidence 455555321 222333456789999999999999876655 11
Q ss_pred CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC---cccHH--HHHHHhc-----
Q psy12466 458 TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN---GKSKL--YELMTGL----- 527 (680)
Q Consensus 458 ~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn---~~s~~--~~~l~~l----- 527 (680)
..|..++.++..-.+.+.. ..-..++.....-....+.+|+|||...+.. +.... .+.+.+|
T Consensus 361 A~VPFF~~sGSEFdEm~VG--------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD 432 (752)
T KOG0734|consen 361 AGVPFFYASGSEFDEMFVG--------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD 432 (752)
T ss_pred cCCCeEeccccchhhhhhc--------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc
Confidence 1222333332221111110 1112233333444556799999999988733 33321 2233333
Q ss_pred ---ccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCC
Q psy12466 528 ---NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLG 560 (680)
Q Consensus 528 ---~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~ 560 (680)
+..-.+++-||-+...+..- +++|+.|+
T Consensus 433 GF~qNeGiIvigATNfpe~LD~A-----L~RPGRFD 463 (752)
T KOG0734|consen 433 GFKQNEGIIVIGATNFPEALDKA-----LTRPGRFD 463 (752)
T ss_pred CcCcCCceEEEeccCChhhhhHH-----hcCCCccc
Confidence 55678999999877766553 67888765
No 300
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.15 E-value=2.1 Score=48.05 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
+.-.+|.-++|.|||..++.++......+ .++|.|.-.....|......++--+..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g-------~~vlYvs~Ees~~qi~~ra~rlg~~~~----------------- 135 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAG-------GKVLYVSGEESASQIKLRAERLGLPSD----------------- 135 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEEccccHHHHHHHHHHcCCChh-----------------
Confidence 44467899999999999999988776543 258888876666666555554321110
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
++.+..-..+......+...+.++||+|+.+.+..
T Consensus 136 ----~l~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 ----NLYLLAETNLEAILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred ----cEEEeCCCCHHHHHHHHHhhCCCEEEEechhhhcc
Confidence 01121111123333445566899999999997643
No 301
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=91.15 E-value=6.5 Score=48.03 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=43.8
Q ss_pred CCCEEEEeHHHHHHHHHhh---------hccCceEEEEcCcccccCcccHHHHHHHh---cccceEEEEeCCCCCCCHHH
Q psy12466 479 VSPVLIISYEMLIRAYQTI---------VDTEFDLLICDEGHRLKNGKSKLYELMTG---LNIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l---------~~~~~~~vIlDEaH~~kn~~s~~~~~l~~---l~~~~rllLTgTP~~n~~~e 546 (680)
..+|+|+|-+.+......+ ....-..|||||+|.+-.........+.. .-....++||||--..-...
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 3568888888776544222 22335689999999874433332222222 24567899999987665555
Q ss_pred HHH
Q psy12466 547 FFY 549 (680)
Q Consensus 547 l~s 549 (680)
|+.
T Consensus 642 L~~ 644 (1110)
T TIGR02562 642 LFR 644 (1110)
T ss_pred HHH
Confidence 543
No 302
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.13 E-value=0.21 Score=48.46 Aligned_cols=38 Identities=24% Similarity=0.521 Sum_probs=25.9
Q ss_pred CCCCEEEEeHHHHHHHHH--hh--hccCceEEEEcCcccccC
Q psy12466 478 RVSPVLIISYEMLIRAYQ--TI--VDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~--~l--~~~~~~~vIlDEaH~~kn 515 (680)
...+|+|++|..+..... .+ ....-.+||+||||++-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 357899999999865322 12 234567999999999843
No 303
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.09 E-value=4.1 Score=43.25 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=30.2
Q ss_pred CceEEEEcCcccccCcc--cHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 501 EFDLLICDEGHRLKNGK--SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 501 ~~~~vIlDEaH~~kn~~--s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
..++||+||+|.+.... ......+.......++++|++....-...+.+-+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 46799999999883322 1122223444566678888876554444454443
No 304
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.09 E-value=6.7 Score=37.57 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=21.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.++.-..|.|||..+..++..+...+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 35678899999999999998887764
No 305
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.08 E-value=2.4 Score=47.69 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=58.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
..+.+|.-++|+|||..+-+++..+....+ ..+++.+....++......+..- .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-----~~~v~yv~~~~f~~~~~~~l~~~--~------------------- 194 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFS-----DLKVSYMSGDEFARKAVDILQKT--H------------------- 194 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCC-----CCeEEEEEHHHHHHHHHHHHHHh--h-------------------
Confidence 356789999999999998888877665432 12355555544444444333210 0
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCccc---HHHHHHHhc-ccceEEEEeCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKS---KLYELMTGL-NIRKRILLSGT 538 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s---~~~~~l~~l-~~~~rllLTgT 538 (680)
..++.+. ..+ ...+++|+||+|.+.+... ..+..+..+ .....+++|+.
T Consensus 195 --------~~~~~~~---~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 --------KEIEQFK---NEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred --------hHHHHHH---HHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 0011111 222 2578999999999865332 233333333 23335788843
No 306
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=91.02 E-value=0.51 Score=59.83 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=51.0
Q ss_pred CeEEEEECcccHHHHH-HHHHH----H------h----CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--
Q psy12466 193 LRVLIVTPSSLTSNWN-DEFKK----W------L----GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-- 255 (680)
Q Consensus 193 ~~~LIV~P~sl~~nW~-~E~~k----~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-- 255 (680)
-++|+|+|.--+.+-. +++++ + + ...++.+.+|+.....+........+|+|||.|.+.....
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk 117 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR 117 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh
Confidence 3799999976654432 22321 1 1 2345666666654433332333567999999999865422
Q ss_pred ---hhhcCCCcEEEEcCCCCCCCC
Q psy12466 256 ---TIVDTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 256 ---~l~~~~~~~vI~DEaH~lKN~ 276 (680)
.+ .+.++||+||+|.|-+.
T Consensus 118 ~r~~L--~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 118 ARETL--RGVETVIIDEVHAVAGS 139 (1490)
T ss_pred hhhhh--ccCCEEEEecHHHhccc
Confidence 12 34678999999999864
No 307
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=91.01 E-value=1 Score=54.42 Aligned_cols=132 Identities=19% Similarity=0.234 Sum_probs=73.7
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHHHHHHHhCCCCeeEeec-CCcchhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWNDEFKKWLGLTRMCPYHV-NQKNKAE 472 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~E~~~~~~~~~v~~~~~-~~~~~~~ 472 (680)
.|.|.=..+|=|||++|..-+....-.|. .+-||+.+ .|. ..|...+-+|++. .+.+... .......
T Consensus 183 ~G~IAEM~TGEGKTLvAtlp~yLnAL~Gk-------gVHvVTVNDYLA~RDaewmgply~fLGL-svg~i~~~~~~~~~r 254 (1112)
T PRK12901 183 QGKIAEMATGEGKTLVATLPVYLNALTGN-------GVHVVTVNDYLAKRDSEWMGPLYEFHGL-SVDCIDKHQPNSEAR 254 (1112)
T ss_pred CCceeeecCCCCchhHHHHHHHHHHHcCC-------CcEEEEechhhhhccHHHHHHHHHHhCC-ceeecCCCCCCHHHH
Confidence 57777799999999987543332222221 25666665 555 8899999999885 3433322 1111111
Q ss_pred hhhhcCCCCEEEEeHHHH-----HHH----HHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCC
Q psy12466 473 DYVYSRVSPVLIISYEML-----IRA----YQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQND 543 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l-----~~~----~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~ 543 (680)
... -.+||.-+|-..| +.+ .+.+....+.+.|+||+..+- +. .++.-+++||. ..+.
T Consensus 255 r~a--Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL---------ID--EARTPLIISGp-~~~~ 320 (1112)
T PRK12901 255 RKA--YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL---------ID--DARTPLIISGP-VPKG 320 (1112)
T ss_pred HHh--CCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh---------hc--cccCcEEEeCC-CCCc
Confidence 111 1345555443333 222 223445679999999998541 11 34445888885 3344
Q ss_pred HHHHHHHH
Q psy12466 544 LQEFFYLN 551 (680)
Q Consensus 544 ~~el~sll 551 (680)
..++|..+
T Consensus 321 ~~~~y~~~ 328 (1112)
T PRK12901 321 DDQEFEEL 328 (1112)
T ss_pred cHHHHHHH
Confidence 44454433
No 308
>PF13245 AAA_19: Part of AAA domain
Probab=90.94 E-value=0.79 Score=38.04 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=35.6
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEF 451 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~ 451 (680)
.+-.++--.+|+|||.+++..+..+...... + .+++||++|+... .+-.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~--~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARAD--P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcC--C-CCeEEEECCCHHHHHHHHHHH
Confidence 3446668999999999999988888754211 1 2469999998444 4433333
No 309
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=90.94 E-value=3.6 Score=38.19 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=25.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
++.-..|.|||..+..++......+ .+++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~-------~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKG-------GKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcC-------CEEEEEECC
Confidence 5667899999999999988776643 246666554
No 310
>PRK06893 DNA replication initiation factor; Validated
Probab=90.88 E-value=2.9 Score=42.43 Aligned_cols=28 Identities=14% Similarity=-0.105 Sum_probs=23.4
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
...+|.-..|+|||..+.+++..+...+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3458999999999999999988876654
No 311
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=90.85 E-value=3.6 Score=47.94 Aligned_cols=47 Identities=23% Similarity=0.155 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.|...++.+.+.+.. ..-.+.-||.-..|+|||..|..++..+....
T Consensus 28 Gq~~~v~~L~~~~~~--gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 28 GQEAMVRTLTNAFET--GRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred CcHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 466666666554321 12244578889999999999999998887554
No 312
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=90.82 E-value=0.44 Score=58.05 Aligned_cols=76 Identities=11% Similarity=0.120 Sum_probs=50.2
Q ss_pred eEEEEeccc-hHHHHHHHHHHHhCCCCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEc
Q psy12466 434 KVLIVTPSS-LTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICD 508 (680)
Q Consensus 434 ~~LIV~P~s-ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlD 508 (680)
.++|+||.. -+....+.+.+.+|..++..+||.-..... .....+..+|+|+|- .+..-+ .-.+.++||++
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-iie~GI---DIp~v~~VIi~ 737 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-IIETGI---DIPNANTIIIE 737 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hhhccc---ccccCCEEEEe
Confidence 489999974 345556667777788899999987554332 223456788999983 333322 22346789998
Q ss_pred Ccccc
Q psy12466 509 EGHRL 513 (680)
Q Consensus 509 EaH~~ 513 (680)
.++++
T Consensus 738 ~a~~~ 742 (926)
T TIGR00580 738 RADKF 742 (926)
T ss_pred cCCCC
Confidence 88764
No 313
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.73 E-value=2.2 Score=48.53 Aligned_cols=46 Identities=20% Similarity=0.093 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..+.+.+. ...-.+..+|.-+.|+|||..|-.++..+...
T Consensus 25 Gq~~vv~~L~~ai~--~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 25 GQEVLVKVLSYTIL--NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CcHHHHHHHHHHHH--cCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 46666665544321 12234578899999999999999999887654
No 314
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=90.59 E-value=0.83 Score=49.52 Aligned_cols=26 Identities=31% Similarity=0.179 Sum_probs=20.5
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
..-...||.-.+|+|||..|-.++..
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHh
Confidence 45577999999999999877666543
No 315
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.57 E-value=8.7 Score=42.47 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..+...+.. ..-...-|+.-+.|+|||..|.+++..+.-.
T Consensus 20 Gq~~~~~~L~~~~~~--~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 20 AQEHITRTIQNSLRM--GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ChHHHHHHHHHHHHh--CCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 355555554443211 1123346688999999999999999888654
No 316
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.55 E-value=4.2 Score=45.46 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=23.7
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..-.+++-..|.|||.++..++..+...+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g 123 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKG 123 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 34567788999999999999998887654
No 317
>PRK12377 putative replication protein; Provisional
Probab=90.51 E-value=2.2 Score=43.94 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=25.2
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..+.+|.-++|+|||..+.|++..+...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 46778999999999999999999888765
No 318
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.34 E-value=0.85 Score=53.62 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=55.2
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
..|-.++.-+.+.+. .+.+.-+|.--.|.|||+++..++.... +|+|||+|+ .+..||.+||+.|
T Consensus 12 ~~Q~~ai~~l~~~~~----~~~~~~~l~Gvtgs~kt~~~a~~~~~~~----------~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 12 GDQPKAIAKLVEGLT----DGEKHQTLLGVTGSGKTFTMANVIAQVN----------RPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred hHHHHHHHHHHHhhh----cCCCcEEEECCCCcHHHHHHHHHHHHhC----------CCEEEEECCHHHHHHHHHHHHHh
Confidence 378888888877532 2223446788899999999887775421 359999998 5668999999999
Q ss_pred hCCCCeeEe
Q psy12466 455 LGLTRMCPY 463 (680)
Q Consensus 455 ~~~~~v~~~ 463 (680)
+|...|..+
T Consensus 78 ~p~~~V~~f 86 (655)
T TIGR00631 78 FPENAVEYF 86 (655)
T ss_pred CCCCeEEEE
Confidence 998656554
No 319
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.30 E-value=2.5 Score=47.82 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=21.8
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
..|+.-++|+|||..|-+++..+...
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc
Confidence 45899999999999999988876543
No 320
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.24 E-value=1.8 Score=52.68 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=31.8
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|..-++.+++.++ .....+.+|.-++|.|||..+-+++..+..
T Consensus 178 r~~ei~~~~~~l~---r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 178 RDEEIRRTIQVLS---RRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred cHHHHHHHHHHHh---cCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5556777776543 234577899999999999999888876644
No 321
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.17 E-value=0.69 Score=52.20 Aligned_cols=104 Identities=15% Similarity=0.246 Sum_probs=56.8
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhC----CCCeeEeecCCcchhh---hhh
Q psy12466 404 DEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLG----LTRMCPYHVNQKNKAE---DYV 475 (680)
Q Consensus 404 DemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~----~~~v~~~~~~~~~~~~---~~~ 475 (680)
+.+|.|||+++.++|..+..+|- +.+|..|-. +++..-...|..-.. ....+.+.+. ..... .+.
T Consensus 4 matgsgkt~~ma~lil~~y~kgy------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~-~i~ikkvn~fs 76 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKGY------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDE-NIEIKKVNNFS 76 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhch------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCc-eeeeeeecccC
Confidence 57899999999999999988874 347777764 666544433321100 0001111111 11111 110
Q ss_pred -hcCCCCEEEEeHHHHHHHHHhhhc---------cCceEEEEcCccccc
Q psy12466 476 -YSRVSPVLIISYEMLIRAYQTIVD---------TEFDLLICDEGHRLK 514 (680)
Q Consensus 476 -~~~~~~vvI~ty~~l~~~~~~l~~---------~~~~~vIlDEaH~~k 514 (680)
....-.|++||-+.+..+...-.. ..--+++-||||++.
T Consensus 77 ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 77 EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 112345889998888765433221 112356679999993
No 322
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=90.16 E-value=2.4 Score=50.79 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=30.3
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCce-EEEcCCCCChHHHHHHHHHHHHh
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGA-ILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~-iLaDemGlGKT~~aiali~~~~~ 423 (680)
|.-|.+.+...+.... ......++ ++.-.+|+|||.++-.++..+..
T Consensus 760 REeEIeeLasfL~paI--kgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 760 REKEIKEVHGFLESGI--KQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred hHHHHHHHHHHHHHHH--hcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556666654444321 12233345 48999999999999998877754
No 323
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.07 E-value=9.4 Score=44.40 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.|...+..+.+.+. ...-.. -|+.-+.|+|||..+.+++..+...
T Consensus 20 Gq~~v~~~L~~~i~---~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 20 GQEHVSRTLQNAID---TGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 35555555554322 122233 4788899999999999999887643
No 324
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.04 E-value=2.4 Score=51.46 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=31.9
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|..-++.+++.++ .....+.||.-++|.|||..+=.++..+..
T Consensus 192 r~~ei~~~i~~l~---r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILL---RRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHh---cCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 5556777776432 234568899999999999998888777654
No 325
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.02 E-value=3.5 Score=47.84 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.|...+..|...+. ...-.. -|+.-..|+|||..|.+++..+.-
T Consensus 17 Gq~~i~~~L~~~i~---~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 17 GQEHVTEPLSSALD---AGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46666666655432 122233 478899999999999999987764
No 326
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=89.94 E-value=1.1 Score=40.28 Aligned_cols=21 Identities=38% Similarity=0.335 Sum_probs=17.4
Q ss_pred EEEcCCCCChHHHHHHHHHHH
Q psy12466 401 ILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~ 421 (680)
+|--.+|+|||..+-.++..+
T Consensus 2 ll~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc
Confidence 566789999999988888765
No 327
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=89.92 E-value=1.6 Score=53.43 Aligned_cols=129 Identities=17% Similarity=0.152 Sum_probs=74.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
.|-+-|++++..+.. ...-++|.-..|+|||.+.-++.......+. .++.++|+.....=..+
T Consensus 346 ~Ls~eQr~Av~~il~--------s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~-------~V~~~ApTGkAA~~L~e-- 408 (988)
T PRK13889 346 VLSGEQADALAHVTD--------GRDLGVVVGYAGTGKSAMLGVAREAWEAAGY-------EVRGAALSGIAAENLEG-- 408 (988)
T ss_pred CCCHHHHHHHHHHhc--------CCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-------eEEEecCcHHHHHHHhh--
Confidence 478899999987753 1235788899999999875555444444442 48888997654322211
Q ss_pred HHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHH--HhhhccCceEEEEcCcccccCcccHHHHHHHhc-cc
Q psy12466 453 KWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY--QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NI 529 (680)
Q Consensus 453 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~--~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~ 529 (680)
-.+ ...... ..+.... ....-...++||||||-.+. .....+.+... ..
T Consensus 409 -~tG---------i~a~TI----------------~sll~~~~~~~~~l~~~~vlIVDEASMv~--~~~m~~LL~~a~~~ 460 (988)
T PRK13889 409 -GSG---------IASRTI----------------ASLEHGWGQGRDLLTSRDVLVIDEAGMVG--TRQLERVLSHAADA 460 (988)
T ss_pred -ccC---------cchhhH----------------HHHHhhhcccccccccCcEEEEECcccCC--HHHHHHHHHhhhhC
Confidence 000 000000 0000000 00012346899999999883 23344444433 56
Q ss_pred ceEEEEeCCCCCCCHHH
Q psy12466 530 RKRILLSGTPLQNDLQE 546 (680)
Q Consensus 530 ~~rllLTgTP~~n~~~e 546 (680)
..+++|.|=|-|....+
T Consensus 461 garvVLVGD~~QLpsV~ 477 (988)
T PRK13889 461 GAKVVLVGDPQQLQAIE 477 (988)
T ss_pred CCEEEEECCHHHcCCCC
Confidence 78999999987765443
No 328
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=89.72 E-value=2.4 Score=47.53 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=23.7
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.+|.-+.|+|||..+-+++..+...+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~ 169 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG 169 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4678899999999999999998877653
No 329
>KOG0354|consensus
Probab=89.71 E-value=0.81 Score=53.43 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=44.3
Q ss_pred eEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCC---CcEEEEcC
Q psy12466 194 RVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTE---FDLLICDE 269 (680)
Q Consensus 194 ~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~---~~~vI~DE 269 (680)
+++..+|..- +.|=..+|...+-...+....++..........-...+|++.+=..+.++........ |.++|+||
T Consensus 108 KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE 187 (746)
T KOG0354|consen 108 KVVFLAPTRPLVNQQIACFSIYLIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDE 187 (746)
T ss_pred eEEEeeCCchHHHHHHHHHhhccCcccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcc
Confidence 4455555432 2333345555542233444444422222111122346789999888888766443333 99999999
Q ss_pred CCCCC
Q psy12466 270 KSLLK 274 (680)
Q Consensus 270 aH~lK 274 (680)
|||-.
T Consensus 188 ~Hra~ 192 (746)
T KOG0354|consen 188 CHRTS 192 (746)
T ss_pred ccccc
Confidence 99753
No 330
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.71 E-value=2 Score=45.84 Aligned_cols=44 Identities=30% Similarity=0.219 Sum_probs=29.6
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...+..+.+... .......++.-+.|+|||..+.+++..+...
T Consensus 20 ~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 20 QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4455555544321 1222368899999999999999998877643
No 331
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.69 E-value=10 Score=43.44 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHhhhhhccCCCCce-EEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGA-ILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~-iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.|...+..|.+.+. ...-... ++.-+.|.|||..+-+++..+...
T Consensus 18 Gqe~v~~~L~~~I~---~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 18 GQESVSKTLSLALD---NNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred CcHHHHHHHHHHHH---cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 35555555554332 1222333 788999999999999999887643
No 332
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=89.64 E-value=11 Score=43.73 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=28.4
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...+..+.+.+.. ...++.-|+.-+.|+|||..|-.++..+...
T Consensus 21 q~~v~~~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 21 QEHITKTLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred cHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44555544443221 1123345668999999999999988776544
No 333
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.60 E-value=11 Score=43.98 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...-|+.-+.|+|||..|..++..+..
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccc
Confidence 345667899999999999999988764
No 334
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.50 E-value=2.3 Score=51.63 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=30.1
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
..+-+..+.+.++ .....+.||.-++|.|||..+-+++..+..
T Consensus 184 r~~ei~~~~~~L~---r~~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 184 REKEIERVIQILG---RRTKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred cHHHHHHHHHHHc---ccccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3344455554432 234568899999999999999888877654
No 335
>KOG0332|consensus
Probab=89.47 E-value=1.3 Score=47.33 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhh
Q psy12466 395 LDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~ 472 (680)
.+.++-|--...|+|||..- ++.+...-..- -.| -.+.+||. -+..|-.+-+.+......+....+-...+..
T Consensus 127 ~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--~~P---Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~ 201 (477)
T KOG0332|consen 127 EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--VVP---QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK 201 (477)
T ss_pred CCchhhhhhhcCCCchhHHHHHHHHHhcCccc--cCC---CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc
Confidence 34555555578899999652 22222221111 111 25777997 4555554444443222222222211111111
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhhhc---cCceEEEEcCcccccCcc---cHHHHHHHhcc-cceEEEEeCCCC
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTIVD---TEFDLLICDEGHRLKNGK---SKLYELMTGLN-IRKRILLSGTPL 540 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l~~---~~~~~vIlDEaH~~kn~~---s~~~~~l~~l~-~~~rllLTgTP~ 540 (680)
+. ..-..+|+|-|..++......+.- ....++++|||..+-+.. -+..+.++.+. ....++.|||-.
T Consensus 202 rG-~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~ 275 (477)
T KOG0332|consen 202 RG-NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV 275 (477)
T ss_pred cC-CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhH
Confidence 11 111356999999998877665443 356799999999875433 23334444454 556688899863
No 336
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.44 E-value=2.4 Score=51.65 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=31.6
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|..-++.+++.++ .....+.+|.-++|.|||..+-+++..+..
T Consensus 183 r~~ei~~~i~iL~---r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 183 RDEEIRRTIQVLQ---RRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CHHHHHHHHHHHh---cCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4445777776433 235568999999999999999888877653
No 337
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=89.41 E-value=2.9 Score=45.65 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=71.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
.-.+++-|+|.||+..-+-+++.+...+ ++|.|+-.--..||+-...+.--
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~--------~vLYVsGEES~~QiklRA~RL~~--------------------- 144 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG--------KVLYVSGEESLQQIKLRADRLGL--------------------- 144 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC--------cEEEEeCCcCHHHHHHHHHHhCC---------------------
Confidence 3367789999999998888888887765 39999999999999888887521
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
...++++.....+......+.+.+++++|+|=.|.+-+
T Consensus 145 ~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 145 PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeec
Confidence 12456777777777777888889999999999998744
No 338
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.38 E-value=3.6 Score=46.16 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.1
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
...+|.-+.|+|||..+-+++..+....+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~ 159 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP 159 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCC
Confidence 45789999999999999999988776543
No 339
>PRK06921 hypothetical protein; Provisional
Probab=89.31 E-value=3 Score=43.49 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=25.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.+.+.+|.-++|+|||..+.|++..+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 45678899999999999999999888765
No 340
>KOG0951|consensus
Probab=89.22 E-value=2.5 Score=51.69 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=72.3
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-----HHHHHHHHHHhCCCCeeEeecCCc
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-----SNWNDEFKKWLGLTRMCPYHVNQK 468 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-----~qW~~E~~~~~~~~~v~~~~~~~~ 468 (680)
+..+...+++...|+|||+.|=-.+.. + ....++..|+|...+ .-|...|..- .+..+.-..|...
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae~a~l~-----~---~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s 1226 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAELALLR-----P---DTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETS 1226 (1674)
T ss_pred ecccceEEEecCCCCchhHHHHHHhcC-----C---ccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccc
Confidence 345678999999999999877322221 2 235678999998655 6687777765 3333443333322
Q ss_pred chhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc
Q psy12466 469 NKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 469 ~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~ 516 (680)
.+.......+|+|.|.+.+.... .-...++.|+||.|.+.+.
T Consensus 1227 ---~~lkl~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~ 1268 (1674)
T KOG0951|consen 1227 ---LDLKLLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGV 1268 (1674)
T ss_pred ---cchHHhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhccc
Confidence 22233346789999999886542 2345889999999999754
No 341
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.15 E-value=9.6 Score=39.79 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=74.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-c---chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-S---SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~---sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
....+.-..|.|||.....++..+...+. ++.+|.- . ..+.||...... ..+.++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~-------~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~--------- 135 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-------TVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA--------- 135 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCC-------eEEEEecCCCCHHHHHHHHHHhhh----cCceEEe---------
Confidence 45677788999999988777776654332 3555544 2 355677644332 1111111
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhc-cCceEEEEcCcccccCcccHHHHHHHhc----c-cceEEEEeCCCCCCCHHHH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVD-TEFDLLICDEGHRLKNGKSKLYELMTGL----N-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~-~~~~~vIlDEaH~~kn~~s~~~~~l~~l----~-~~~rllLTgTP~~n~~~el 547 (680)
..+.+.+...+..+.. .++|+||+|-+=+...... ....+..+ . ....++|+||--.+...+.
T Consensus 136 ----------~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~-~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 136 ----------VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASE-TVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred ----------cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHH-HHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 0122334444444433 3689999999866533222 22222222 2 2345789999988888888
Q ss_pred HHHHhhhCCC
Q psy12466 548 FYLNDFANPG 557 (680)
Q Consensus 548 ~sll~fl~p~ 557 (680)
...++-+.++
T Consensus 205 ~~~f~~~~~~ 214 (270)
T PRK06731 205 ITNFKDIHID 214 (270)
T ss_pred HHHhCCCCCC
Confidence 7776665444
No 342
>KOG0331|consensus
Probab=89.15 E-value=0.81 Score=51.54 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=65.1
Q ss_pred HHhhcCCCCCeEEEEECcc-cHHHHHHHHHHHhCCCC--eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hh
Q psy12466 184 QEKNRRSYILRVLIVTPSS-LTSNWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IV 258 (680)
Q Consensus 184 Q~~~~~~~~~~~LIV~P~s-l~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~ 258 (680)
|....++...++||+||+- |..|-++++.++....+ ...++|+....-+........+|+|.+=+.+..+.+. +.
T Consensus 157 ~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~ 236 (519)
T KOG0331|consen 157 QGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLN 236 (519)
T ss_pred cccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCcc
Confidence 4445556677899999976 45688999999985555 5555555544344333446678999999988665552 33
Q ss_pred cCCCcEEEEcCCCCCCCC
Q psy12466 259 DTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~ 276 (680)
-.+..++|+|||.|+-..
T Consensus 237 l~~v~ylVLDEADrMldm 254 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDM 254 (519)
T ss_pred ccceeEEEeccHHhhhcc
Confidence 346889999999999764
No 343
>PF13173 AAA_14: AAA domain
Probab=89.14 E-value=3.6 Score=37.49 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=26.8
Q ss_pred CceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCC
Q psy12466 501 EFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQND 543 (680)
Q Consensus 501 ~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~ 543 (680)
+..+|++||+|++.+.... .+.+..-..+.++++||.-...-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~-lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDA-LKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred CCcEEEEehhhhhccHHHH-HHHHHHhccCceEEEEccchHHH
Confidence 5679999999999653222 22222223456899999865443
No 344
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.05 E-value=0.34 Score=46.92 Aligned_cols=39 Identities=21% Similarity=0.426 Sum_probs=26.1
Q ss_pred CCCCEEEEehhHHHHHH--Hhh--hcCCCcEEEEcCCCCCCCC
Q psy12466 238 RVSPVLIISYEMLIRAY--QTI--VDTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 238 ~~~~V~itsYe~l~~~~--~~l--~~~~~~~vI~DEaH~lKN~ 276 (680)
...+|+|++|..+-... ..+ ....-.+||+||||.|=+.
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 44789999999886532 122 2345578999999998543
No 345
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=88.93 E-value=0.88 Score=52.55 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=78.1
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH----HHHhCCCCeeEeecCCcchhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF----KKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~----~~~~~~~~v~~~~~~~~~~~~ 472 (680)
+-.+..-.=--|||..+..++..+....+ .-.+++++|. .+...--+|+ ++|++...+....+ ...
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~-----Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG---e~I- 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFR-----GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG---ETI- 325 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCC-----CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC---cEE-
Confidence 33455555567999988777765554322 1258999995 4555555554 45655433322222 111
Q ss_pred hhhhc-CC-CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc--ccceEEEEeCCC---------
Q psy12466 473 DYVYS-RV-SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL--NIRKRILLSGTP--------- 539 (680)
Q Consensus 473 ~~~~~-~~-~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l--~~~~rllLTgTP--------- 539 (680)
.+... +. ..+.+.|- ..-..++...++++|+||||.++.. .....+--+ .....|.+|.|-
T Consensus 326 ~i~f~nG~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~--al~~ilp~l~~~n~k~I~ISS~Ns~~~sTSFL 399 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPD--AVQTIMGFLNQTNCKIIFVSSTNTGKASTSFL 399 (738)
T ss_pred EEEecCCCccEEEEEec----cCCCCccCCcccEEEEechhhCCHH--HHHHHHHHHhccCccEEEEecCCCCccchHHH
Confidence 11111 11 12333211 1123466678999999999999652 222222112 455567787662
Q ss_pred --CCCCHHHHHHHHhhhCCCC
Q psy12466 540 --LQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 540 --~~n~~~el~sll~fl~p~~ 558 (680)
+.|...+|.+...|++++-
T Consensus 400 ~nLk~a~~~lLNVVsYvCdeH 420 (738)
T PHA03368 400 YNLKGAADELLNVVTYICDEH 420 (738)
T ss_pred HhhcCchhhheeeEEEEChhh
Confidence 4455566666666665543
No 346
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.90 E-value=11 Score=39.68 Aligned_cols=44 Identities=27% Similarity=0.236 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.|.+.+..+...+. .......+|.-+.|+|||..+-+++..+..
T Consensus 21 g~~~~~~~l~~~i~---~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 21 GQEEIVERLKSYVK---EKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred CcHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 35555655554321 122345799999999999999888877644
No 347
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=88.89 E-value=3.1 Score=41.89 Aligned_cols=30 Identities=23% Similarity=0.070 Sum_probs=24.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.....+|.-+.|+|||..+.++.......+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~ 70 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG 70 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 456789999999999999988887765543
No 348
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.76 E-value=2.1 Score=43.80 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=59.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH------HHHHHHHHHHhCCCCeeEeecCCcch
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT------SNWNDEFKKWLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll------~qW~~E~~~~~~~~~v~~~~~~~~~~ 470 (680)
.+-+.+.-++|+|||+.+=+++..+.... .+.|+.|+.++ .-|..++.. -|.. .
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~--------~~~v~i~~~~~s~~~~~~ai~~~l~~-~p~~-----------~ 110 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQ--------VAVVVIDKPTLSDATLLEAIVADLES-QPKV-----------N 110 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCc--------eEEEEecCcchhHHHHHHHHHHHhcc-Cccc-----------h
Confidence 33566778999999998875555544322 24567776543 456665553 1110 0
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHHhhhcc-CceEEEEcCcccccCcccHHHHHHHhc----ccceEEEEeCCC
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQTIVDT-EFDLLICDEGHRLKNGKSKLYELMTGL----NIRKRILLSGTP 539 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~-~~~~vIlDEaH~~kn~~s~~~~~l~~l----~~~~rllLTgTP 539 (680)
+-......-+......... +.-++++||||.+....-...+.+..+ ....+++|-|-|
T Consensus 111 -----------~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp 173 (269)
T COG3267 111 -----------VNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP 173 (269)
T ss_pred -----------hHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc
Confidence 0000011111112222233 347999999999865444444444433 333457777777
No 349
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.66 E-value=4.4 Score=44.24 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=73.7
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCC---ccceEEEEeccchHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMP---VIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~---~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
-|.+++..+.+.+.. ..-.+.-++.-..|+||+..|.+|+..+.-..+.+.. .....|-+|+..-...|.. ..
T Consensus 23 Gq~~~~~~L~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~--~~ 98 (365)
T PRK07471 23 GHAAAEAALLDAYRS--GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA--AG 98 (365)
T ss_pred ChHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH--cc
Confidence 366666666554321 1223456788999999999999999999865532111 0123566666533333322 11
Q ss_pred HhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh----ccCceEEEEcCcccccCc-ccHHHHHHHhcc
Q psy12466 454 WLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV----DTEFDLLICDEGHRLKNG-KSKLYELMTGLN 528 (680)
Q Consensus 454 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~----~~~~~~vIlDEaH~~kn~-~s~~~~~l~~l~ 528 (680)
-.|+..++.-....+.. .. ... ++-+.++.....+. ...+.+|||||+|.+... .+...+.+....
T Consensus 99 ~HPDl~~i~~~~~~~~~--~~----~~~---I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 99 AHGGLLTLERSWNEKGK--RL----RTV---ITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred CCCCeEEEecccccccc--cc----ccc---ccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 12443222111001000 00 011 13444554444332 246889999999988321 122333333333
Q ss_pred cce-EEEEeCCC
Q psy12466 529 IRK-RILLSGTP 539 (680)
Q Consensus 529 ~~~-rllLTgTP 539 (680)
... .+++|-.|
T Consensus 170 ~~~~~IL~t~~~ 181 (365)
T PRK07471 170 ARSLFLLVSHAP 181 (365)
T ss_pred CCeEEEEEECCc
Confidence 333 34455544
No 350
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=88.55 E-value=3.4 Score=40.73 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH-HHHHHHH--hCCCCeeEeecCCcchhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW-NDEFKKW--LGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW-~~E~~~~--~~~~~v~~~~~~~~~~~~ 472 (680)
..+..++....|-|||..|++++......+. +++|| -.+...| ..|..-+ ++. +.+..........
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-------~V~iv--QFlKg~~~~GE~~~l~~l~~--v~~~~~g~~~~~~ 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGK-------KVGVV--QFIKGAWSTGERNLLEFGGG--VEFHVMGTGFTWE 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCC-------eEEEE--EEecCCCccCHHHHHhcCCC--cEEEECCCCCccc
Confidence 3456778899999999999999988887763 35554 2233333 1222221 232 2222111100000
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc----ccHHHHHHHhcccceEEEEeCCCCCCCHHHHH
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG----KSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~----~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~ 548 (680)
. .....-.-.--+.+......+....+|+||+||.-..-+. .......+..-...--++|||--....+.|+.
T Consensus 90 ~---~~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~A 166 (191)
T PRK05986 90 T---QDRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAA 166 (191)
T ss_pred C---CCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 0 0000000000011222234456778999999998654332 23334444443444569999986666555555
Q ss_pred HHHhhh
Q psy12466 549 YLNDFA 554 (680)
Q Consensus 549 sll~fl 554 (680)
.++.-+
T Consensus 167 DlVTEm 172 (191)
T PRK05986 167 DLVTEM 172 (191)
T ss_pred chheec
Confidence 444433
No 351
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.19 E-value=1.1 Score=53.61 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=61.0
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhC---CCCeeE-EeecCCcch----hhhcccCCCCEEEEehhHHHHHHHhhhcCCCc
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLG---LTRMCP-YHVNQKNKA----EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFD 263 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~---~~~~~~-~~~~~~~~~----~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~ 263 (680)
++++||+|+++ +.|=.+-+.++.. ..++.+ ||+.-..+. ........++|+|||=..+.+..+.|.+.+||
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFd 205 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFD 205 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCC
Confidence 78999999776 5788899999972 123332 555532222 12345567999999999999999999999999
Q ss_pred EEEEcCCCCC
Q psy12466 264 LLICDEKSLL 273 (680)
Q Consensus 264 ~vI~DEaH~l 273 (680)
+|++|-+.-+
T Consensus 206 fifVDDVDA~ 215 (1187)
T COG1110 206 FIFVDDVDAI 215 (1187)
T ss_pred EEEEccHHHH
Confidence 9999998743
No 352
>KOG0738|consensus
Probab=88.19 E-value=1.7 Score=46.97 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
.-+|.++.-.+|+|||+.|=|++.... .+.+=+. +.+...|.-|-++..
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~-----------tTFFNVSsstltSKwRGeSEKlv------------------- 293 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECG-----------TTFFNVSSSTLTSKWRGESEKLV------------------- 293 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhc-----------CeEEEechhhhhhhhccchHHHH-------------------
Confidence 446889999999999999888775432 2455444 567799987766531
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc--------ccHHHH--HHHhc--------ccceEEEEe
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG--------KSKLYE--LMTGL--------NIRKRILLS 536 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~--------~s~~~~--~l~~l--------~~~~rllLT 536 (680)
+-..+.-..+.+..|+|||...+-+. .|+..+ .+.++ ..+..++|-
T Consensus 294 ----------------RlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 294 ----------------RLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred ----------------HHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 11112222345778999998877331 222222 12222 234578899
Q ss_pred CCCCCCCHHHH
Q psy12466 537 GTPLQNDLQEF 547 (680)
Q Consensus 537 gTP~~n~~~el 547 (680)
||-+.=.+.|-
T Consensus 358 ATN~PWdiDEA 368 (491)
T KOG0738|consen 358 ATNFPWDIDEA 368 (491)
T ss_pred ccCCCcchHHH
Confidence 99887777664
No 353
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.01 E-value=4.1 Score=46.78 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=29.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...+..+...+.. .......|+.-+.|+|||..|..++..+...
T Consensus 21 q~~~v~~L~~~i~~--~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 21 QQHALNSLVHALET--QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred cHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 55555555443211 1122345788999999999999999877643
No 354
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.93 E-value=3.3 Score=49.51 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=23.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999998888766544
No 355
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=87.88 E-value=7.8 Score=39.06 Aligned_cols=28 Identities=29% Similarity=0.204 Sum_probs=22.8
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
...+|.-+.|+|||.-.-|++..+....
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~ 62 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQH 62 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 4578999999999998888887776654
No 356
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.85 E-value=6 Score=45.18 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHhhhhhccCCCCce-EEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGA-ILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~-iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
-|...+..+.+.+. ...-... ++.-+.|+|||..+.+++..+...+
T Consensus 18 Gq~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 18 GQEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred ChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 35555555544321 1222334 8889999999999999998876544
No 357
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.83 E-value=0.72 Score=52.59 Aligned_cols=139 Identities=20% Similarity=0.178 Sum_probs=75.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH----HHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCC
Q psy12466 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT----SNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480 (680)
Q Consensus 406 mGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll----~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 480 (680)
=-=|||...+++|+.+...-.. =.+..++.- ++. ..-...+.+|+|...+.-. ....-..... ....
T Consensus 211 RRHGKTWf~VpiIsllL~s~~g-----I~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~--k~~tI~~s~p-g~Ks 282 (668)
T PHA03372 211 RRHGKTWFIIPIISFLLKNIIG-----ISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN--KDNVISIDHR-GAKS 282 (668)
T ss_pred ccCCceehHHHHHHHHHHhhcC-----ceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee--cCcEEEEecC-CCcc
Confidence 3459999999988877763321 136777773 333 4445557889987654211 1100000000 0111
Q ss_pred CEEEEe-HHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCC-----------CCCCHHHHH
Q psy12466 481 PVLIIS-YEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTP-----------LQNDLQEFF 548 (680)
Q Consensus 481 ~vvI~t-y~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP-----------~~n~~~el~ 548 (680)
.++.++ |+ .+.++...|+++++||||-++-..-...--+...+....+.+|.|- +.|...++.
T Consensus 283 t~~fasc~n-----~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~Nsg~~sTSfL~~Lk~~~~~~l 357 (668)
T PHA03372 283 TALFASCYN-----TNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISSTNTTNDATCFLTKLNNSPFDML 357 (668)
T ss_pred eeeehhhcc-----CccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCCCCCCccchHHHhccCchhhhe
Confidence 122222 32 2457778899999999999865432222222333555567777552 345555566
Q ss_pred HHHhhhCCC
Q psy12466 549 YLNDFANPG 557 (680)
Q Consensus 549 sll~fl~p~ 557 (680)
+...|++++
T Consensus 358 nVVsYvC~~ 366 (668)
T PHA03372 358 NVVSYVCEE 366 (668)
T ss_pred eeEEEEchh
Confidence 655565544
No 358
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.82 E-value=2 Score=51.50 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=46.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
...|.+|.-.+|+|||..+-+++..... +++.|-+..++..|..+-.+
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~----------~fi~v~~~~l~~~~vGese~---------------------- 533 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGA----------NFIAVRGPEILSKWVGESEK---------------------- 533 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCC----------CEEEEehHHHhhcccCcHHH----------------------
Confidence 4567888999999999998888765321 25556555555555332221
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
.++..........+.++++||++.+
T Consensus 534 -------------~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 534 -------------AIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred -------------HHHHHHHHHHhcCCEEEEEEChhhh
Confidence 1222223334456789999999987
No 359
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.79 E-value=4.4 Score=45.58 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=56.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+.-.+|+-++|.|||..++.++..+...+ .++|.|.......|......++.-...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-------~kvlYvs~EEs~~qi~~ra~rlg~~~~---------------- 149 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ-------MKVLYVSGEESLQQIKMRAIRLGLPEP---------------- 149 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-------CcEEEEECcCCHHHHHHHHHHcCCChH----------------
Confidence 344468889999999999999988776553 248888887666676655554311000
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.+.+.....+......+...++++||+|..+.+.
T Consensus 150 -----~l~~~~e~~~~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 150 -----NLYVLSETNWEQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred -----HeEEcCCCCHHHHHHHHHhcCCcEEEEecchhhc
Confidence 1111111112233344556689999999998764
No 360
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.67 E-value=11 Score=43.37 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.|...++.+.+.+.. ..-.+.-|+.-..|+|||..|-.++..+..
T Consensus 20 Gq~~v~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 20 GQEHVVRALTNALEQ--QRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CcHHHHHHHHHHHHc--CCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455555555443211 112233478999999999999999887754
No 361
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.53 E-value=5.7 Score=46.10 Aligned_cols=101 Identities=24% Similarity=0.291 Sum_probs=58.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
...+|.-..|+|||..+.+++..+....+. .+++.+....++..+...+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g-----~~V~Yitaeef~~el~~al~~------------------------ 365 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPG-----TRVRYVSSEEFTNEFINSIRD------------------------ 365 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCC-----CeEEEeeHHHHHHHHHHHHHh------------------------
Confidence 347889999999999999988887653221 235555544444444333321
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccH---HHHHHHhccc-ceEEEEeCCC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSK---LYELMTGLNI-RKRILLSGTP 539 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~---~~~~l~~l~~-~~rllLTgTP 539 (680)
-.++.|.+. +. ..|+||||+.|.+.+.... ++..+..+.. ...+++|+.-
T Consensus 366 -------~~~~~f~~~---y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 366 -------GKGDSFRRR---YR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred -------ccHHHHHHH---hh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 012222222 22 3799999999999764432 3334444422 3446676654
No 362
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.43 E-value=4.1 Score=48.82 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=31.1
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|..-+..+++.++ .....+.||.-++|.|||..+-+++..+...
T Consensus 187 r~~ei~~~~~~L~---~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 187 REDELERTIQVLC---RRKKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred cHHHHHHHHHHHh---cCCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4444555555432 2345689999999999999998888777553
No 363
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=87.16 E-value=4 Score=45.01 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=22.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.+.-++.-..|.|||..|.+++..+...
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3456788999999999999998877654
No 364
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=87.14 E-value=8.2 Score=39.09 Aligned_cols=52 Identities=17% Similarity=0.367 Sum_probs=37.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 454 (680)
.+.-.++.-++|.|||..+..++......+ .+++++.-.....+..+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g-------~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQG-------KKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCC-------CEEEEEEcCCCHHHHHHHHHHC
Confidence 345577889999999999999987665544 2578887766666666666554
No 365
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.07 E-value=7.2 Score=42.65 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
++-.+|.-..|.|||.++..++..+..... ..++.+|+....-..=.+.+..|.....+.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G-----~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~---------- 201 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG-----ASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVK---------- 201 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCeEEEEecccccccHHHHHHHHHHHcCCceEecC----------
Confidence 455777899999999999999877653321 12355555543221222334443322222111111
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----~~~~rllLTgTP~~n~~~el~sll 551 (680)
+-..+......+ .+.++|+||++=+..... .....+..+ .....++|+||-=...+.+.+..+
T Consensus 202 ---------~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 202 ---------DGGDLQLALAEL--RNKHMVLIDTIGMSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred ---------CcccHHHHHHHh--cCCCEEEEcCCCCCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 111122222323 246999999996543222 233333333 234568999999888877775544
Q ss_pred h
Q psy12466 552 D 552 (680)
Q Consensus 552 ~ 552 (680)
.
T Consensus 270 ~ 270 (374)
T PRK14722 270 R 270 (374)
T ss_pred H
Confidence 4
No 366
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=86.94 E-value=2.5 Score=48.11 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+|.+|.-++|+|||..+-+++..+..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 35678999999999999998888877643
No 367
>KOG0327|consensus
Probab=86.92 E-value=1.2 Score=47.68 Aligned_cols=140 Identities=13% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHH-HHHHHHHHhCCCCeeEee--c-CCcchh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSN-WNDEFKKWLGLTRMCPYH--V-NQKNKA 471 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~q-W~~E~~~~~~~~~v~~~~--~-~~~~~~ 471 (680)
.+...+.-...|+|||.+-...+........ ...-+||++|...+.+ =.+-+..+....++.+.. + ....+.
T Consensus 62 ~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~----ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~ 137 (397)
T KOG0327|consen 62 KGHDVIAQAQSGTGKTAAFLISILQQIDMSV----KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRRE 137 (397)
T ss_pred cCCceeEeeeccccchhhhHHHHHhhcCcch----HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhh
Confidence 4577888899999999983222221111100 1122799999876644 344444444444444332 2 222222
Q ss_pred hhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCccccc--CcccHHHHHHHhcccc-eEEEEeCCC
Q psy12466 472 EDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLK--NGKSKLYELMTGLNIR-KRILLSGTP 539 (680)
Q Consensus 472 ~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~k--n~~s~~~~~l~~l~~~-~rllLTgTP 539 (680)
..........|++.|...+....+ .+......++++|||.... +...+.+.....+..+ ..+++|||-
T Consensus 138 ~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~ 210 (397)
T KOG0327|consen 138 DQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATM 210 (397)
T ss_pred hhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccC
Confidence 222223335577777755544332 3455568899999999764 4456666666666443 568899996
No 368
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=86.72 E-value=0.56 Score=49.48 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=27.0
Q ss_pred CCCCEEEEehhHHHHHH--Hhhh-cCCCcEEEEcCCCCCCC
Q psy12466 238 RVSPVLIISYEMLIRAY--QTIV-DTEFDLLICDEKSLLKP 275 (680)
Q Consensus 238 ~~~~V~itsYe~l~~~~--~~l~-~~~~~~vI~DEaH~lKN 275 (680)
...+|+|++|..+.... ..+. ...-.+||+||||+|-+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChHH
Confidence 45799999999986433 1111 23467999999999954
No 369
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=86.72 E-value=0.56 Score=49.48 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=27.0
Q ss_pred CCCCEEEEehhHHHHHH--Hhhh-cCCCcEEEEcCCCCCCC
Q psy12466 238 RVSPVLIISYEMLIRAY--QTIV-DTEFDLLICDEKSLLKP 275 (680)
Q Consensus 238 ~~~~V~itsYe~l~~~~--~~l~-~~~~~~vI~DEaH~lKN 275 (680)
...+|+|++|..+.... ..+. ...-.+||+||||+|-+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChHH
Confidence 45799999999986433 1111 23467999999999954
No 370
>PTZ00293 thymidine kinase; Provisional
Probab=86.40 E-value=4.4 Score=40.60 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=26.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
++.-.||+|||...|-.+..+...+. +++++-|.
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~ag~-------kv~~~kp~ 41 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYSEK-------KCVVIKYS 41 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCC-------ceEEEEec
Confidence 55778999999888888877766653 48888885
No 371
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=86.18 E-value=3.7 Score=50.80 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=77.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
.|-+-|++++..+. ...+-++|--..|+|||.+.-++.......+. +++.++|+.-.. ..+.
T Consensus 381 ~Ls~eQ~~Av~~i~--------~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~-------~V~g~ApTgkAA---~~L~ 442 (1102)
T PRK13826 381 RLSDEQKTAIEHVA--------GPARIAAVVGRAGAGKTTMMKAAREAWEAAGY-------RVVGGALAGKAA---EGLE 442 (1102)
T ss_pred CCCHHHHHHHHHHh--------ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-------eEEEEcCcHHHH---HHHH
Confidence 58889999998763 12355788889999999887777666655542 478888875443 2222
Q ss_pred HHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHH--HhhhccCceEEEEcCcccccCcccHHHHHHHhc-cc
Q psy12466 453 KWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY--QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NI 529 (680)
Q Consensus 453 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~--~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~ 529 (680)
+-.+. .. .|...+.... ....-..-++||||||..+. .....+.+... ..
T Consensus 443 e~~Gi-~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~--~~~m~~Ll~~~~~~ 495 (1102)
T PRK13826 443 KEAGI-QS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA--SRQMALFVEAVTRA 495 (1102)
T ss_pred HhhCC-Ce------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC--HHHHHHHHHHHHhc
Confidence 22111 00 0111110000 00001235799999999883 34444555554 46
Q ss_pred ceEEEEeCCCCCCCHHH
Q psy12466 530 RKRILLSGTPLQNDLQE 546 (680)
Q Consensus 530 ~~rllLTgTP~~n~~~e 546 (680)
..+++|-|=|-|..+.+
T Consensus 496 garvVLVGD~~QL~~V~ 512 (1102)
T PRK13826 496 GAKLVLVGDPEQLQPIE 512 (1102)
T ss_pred CCEEEEECCHHHcCCCC
Confidence 78999999998765544
No 372
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=4.8 Score=43.25 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=23.7
Q ss_pred ccCCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 393 ASLDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 393 ~~~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
.-....|.+|.-.+|+|||+.|=|.+..
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3467899999999999999998887754
No 373
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.10 E-value=15 Score=43.57 Aligned_cols=46 Identities=17% Similarity=0.035 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|..+++.+.+.+.. ..-.+.-++.-+.|.|||..|-+++..+...
T Consensus 22 GQe~~v~~L~~aI~~--~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 22 GQDHIVQTLKNIIKS--NKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred CcHHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 466666655554321 1223345788999999999999998777543
No 374
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.00 E-value=6.1 Score=46.26 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.|...+..|.+.+.. ..-...-|+.-+.|+|||..|.+++..+...
T Consensus 20 Gq~~i~~~L~~~l~~--~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALIS--NRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHc--CCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 455666655544321 1123456788999999999999999888654
No 375
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.95 E-value=19 Score=38.49 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=63.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
..+.-..|.|||.++..++..+...+ ++++++.-..--.-..+++..|.....+.++........
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g-------~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dp-------- 181 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQG-------KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADP-------- 181 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-------CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCH--------
Confidence 34556999999999999988877654 246666543211111111222221111211111100000
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHH--HHHHHh----c----ccceEEEEeCCCCCCCHHHHHH
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKL--YELMTG----L----NIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~--~~~l~~----l----~~~~rllLTgTP~~n~~~el~s 549 (680)
-......+.......+|+||+|=+-+..+..... .+.+.+ + .....+.+++|--++.+.....
T Consensus 182 -------a~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 182 -------ASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred -------HHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 0111122222334679999999998875544321 111111 1 2234599999966666665433
No 376
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=85.84 E-value=3.5 Score=43.66 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=24.6
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCC
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPY 427 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~ 427 (680)
--++.-..|.|||..|.+++..+....+.
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~ 54 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPT 54 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcc
Confidence 37788889999999999999999876643
No 377
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=85.61 E-value=1.6 Score=51.73 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=49.8
Q ss_pred eEEEEECcc-cHHHHHHHHHHHhCC--CCeeEEeecC-Cc-ch-hhhcccCCCCEEEEehhHHHHH--HH-------hhh
Q psy12466 194 RVLIVTPSS-LTSNWNDEFKKWLGL--TRMCPYHVNQ-KN-KA-EDYVYSRVSPVLIISYEMLIRA--YQ-------TIV 258 (680)
Q Consensus 194 ~~LIV~P~s-l~~nW~~E~~k~~~~--~~~~~~~~~~-~~-~~-~~~~~~~~~~V~itsYe~l~~~--~~-------~l~ 258 (680)
.++||+|.. |..+|.+++..++.. ..+....+++ .. .. .........+|+++|-+.+..+ .+ .+.
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~ 192 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKF 192 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcc
Confidence 589999987 456777776655422 3444433331 11 11 1112224578999988877321 11 122
Q ss_pred cCCCcEEEEcCCCCCCCCCCC
Q psy12466 259 DTEFDLLICDEKSLLKPPSGN 279 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~s~ 279 (680)
..++.++|+||||.|---.++
T Consensus 193 ~r~l~~~IVDEaDsILiDear 213 (762)
T TIGR03714 193 LRPFNYVIVDEVDSVLLDSAQ 213 (762)
T ss_pred cccCcEEEEecHhhHhhccCc
Confidence 346889999999998554443
No 378
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.60 E-value=11 Score=40.36 Aligned_cols=125 Identities=20% Similarity=0.288 Sum_probs=74.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
-++.---|.|||.+..-++..+...+. ++|+.+--+--.-=.++++.|.....+.++.+.......
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g~-------~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA------- 207 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQGK-------SVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA------- 207 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCCC-------eEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH-------
Confidence 445578899999888888888888764 577776655555555556666544444444432111110
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc---------ccceEEEE--eCCCCCCCHHHH
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL---------NIRKRILL--SGTPLQNDLQEF 547 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l---------~~~~rllL--TgTP~~n~~~el 547 (680)
-+-|+. +..-...++|+|++|=|-|+-|....+ ..+.++ .++|.++| =||-=||.+...
T Consensus 208 ----aVafDA----i~~Akar~~DvvliDTAGRLhnk~nLM-~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA 277 (340)
T COG0552 208 ----AVAFDA----IQAAKARGIDVVLIDTAGRLHNKKNLM-DELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA 277 (340)
T ss_pred ----HHHHHH----HHHHHHcCCCEEEEeCcccccCchhHH-HHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH
Confidence 012333 333445789999999999997754432 222222 24454444 588888876654
No 379
>KOG0342|consensus
Probab=85.47 E-value=1.6 Score=48.23 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=55.1
Q ss_pred eEEEEECcccHH-H---HHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhc---CCCcEEE
Q psy12466 194 RVLIVTPSSLTS-N---WNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD---TEFDLLI 266 (680)
Q Consensus 194 ~~LIV~P~sl~~-n---W~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~---~~~~~vI 266 (680)
.+|||||+--+. | =.+|+-++.+...+.++.|+...+..........+++|.+=+.|..+.+.-.. ...+++|
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 689999976543 3 44455555555566677776655544444445788999999988766553221 2347899
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+|||.||-..
T Consensus 236 lDEADrlLd~ 245 (543)
T KOG0342|consen 236 LDEADRLLDI 245 (543)
T ss_pred eecchhhhhc
Confidence 9999998643
No 380
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.43 E-value=3.3 Score=45.66 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=22.5
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
....|.+|.-++|+|||..|-+++..+
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHh
Confidence 456789999999999999988887653
No 381
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.42 E-value=5.5 Score=44.23 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=20.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
.....+|.-+.|+|||..+-+++...
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999888776543
No 382
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=85.33 E-value=31 Score=40.14 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=30.6
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
|...+..+.+.+.. ....+.-|+.-..|+|||..|.+++..+....
T Consensus 21 Qe~iv~~L~~aI~~--~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILN--NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 55555555443211 12234567889999999999999998886543
No 383
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=85.26 E-value=12 Score=41.81 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
-.+++-..|.|||.++..++..+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~ 125 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKK 125 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4678899999999999999988763
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=85.24 E-value=17 Score=40.46 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=21.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..++--.|.|||.++..++..+...+
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G 128 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKG 128 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 45677899999999999988877654
No 385
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=85.19 E-value=10 Score=36.13 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=65.4
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc---chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS---SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~---sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
+.+-.-|.|||..++.++..+...+. ++|+|-=. +.+. |. |...
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~-------~vllvD~D~q~~~~~-~~-----~~~~-------------------- 50 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGY-------KVGLLDADIYGPSIP-KM-----WRGP-------------------- 50 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCC-------cEEEEeCCCCCCCch-HH-----HhCc--------------------
Confidence 45667799999999999998887663 47776321 1111 11 0000
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANP 556 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p 556 (680)
.....+......+....+|+||+|=...+. .... .+..+.....+++..+|-..+..+...++.++..
T Consensus 51 -------~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~---~~~~-~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 51 -------MKMGAIKQFLTDVDWGELDYLVIDMPPGTG---DEHL-TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred -------chHHHHHHHHHHhhcCCCCEEEEeCCCCCc---HHHH-HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 001223333333333579999999877542 1111 1222234455666668888888888888877753
No 386
>KOG0733|consensus
Probab=85.10 E-value=8.4 Score=44.15 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
....|.+|+-.+|.|||+.|=|.+..-... ++=|=-.-|+..|.-|-++-
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~N----------FisVKGPELlNkYVGESErA-------------------- 592 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAGAN----------FISVKGPELLNKYVGESERA-------------------- 592 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhccCc----------eEeecCHHHHHHHhhhHHHH--------------------
Confidence 456789999999999999988877543221 34444456777776664431
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
++.....-+...+.+|++||...+
T Consensus 593 ---------------VR~vFqRAR~saPCVIFFDEiDaL 616 (802)
T KOG0733|consen 593 ---------------VRQVFQRARASAPCVIFFDEIDAL 616 (802)
T ss_pred ---------------HHHHHHHhhcCCCeEEEecchhhc
Confidence 112222233456889999999877
No 387
>PRK10867 signal recognition particle protein; Provisional
Probab=85.06 E-value=12 Score=41.85 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.3
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-.+++-..|.|||.++..++..+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 35677899999999999999888776
No 388
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=85.01 E-value=1.5 Score=46.70 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=32.1
Q ss_pred CceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCH
Q psy12466 501 EFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 501 ~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~ 544 (680)
+=.+||+||||+ ....+....+.+|-.+.+..+||.+.|-++
T Consensus 243 ~dAfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 243 NDAFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CCeEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 446899999998 344555666778888889999999976543
No 389
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.89 E-value=19 Score=42.06 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.|...+..|.+.+.. ..... -|+.-+.|+|||..+..++..+..
T Consensus 20 Gq~~~~~~L~~~i~~---~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 20 GQEHVVQTLRNAIAE---GRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467777766554321 12223 378999999999999999988754
No 390
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=84.88 E-value=0.64 Score=48.80 Aligned_cols=40 Identities=35% Similarity=0.482 Sum_probs=29.7
Q ss_pred CCCEEEEehhHHHHHHH----------hhhc---CCCc-EEEEcCCCCCCCCCC
Q psy12466 239 VSPVLIISYEMLIRAYQ----------TIVD---TEFD-LLICDEKSLLKPPSG 278 (680)
Q Consensus 239 ~~~V~itsYe~l~~~~~----------~l~~---~~~~-~vI~DEaH~lKN~~s 278 (680)
..+|+.++|.+++.... +|.+ ..|| +||+||+|+.||-.+
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 56799999999987631 2222 2455 888999999999865
No 391
>PRK08939 primosomal protein DnaI; Reviewed
Probab=84.85 E-value=5.4 Score=42.45 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=25.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.|.+|.-.+|+|||..+.|++..+...+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g 184 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG 184 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 456788889999999999999999988665
No 392
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=84.81 E-value=5 Score=40.35 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=39.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhc-CCCCCCccceEEEEeccchHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQ-GPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~-~~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 454 (680)
.+.-.+++-++|+|||..++.++...... +. ++++|.-..-..+..+++..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge-------~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE-------KVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT---------EEEEESSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC-------cEEEEEecCCHHHHHHHHHHc
Confidence 44557888899999999999999877666 54 488888877777777777765
No 393
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=84.63 E-value=17 Score=40.01 Aligned_cols=134 Identities=21% Similarity=0.203 Sum_probs=78.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
++-..|.-.+|.|||.+..-+++.+..... .+++=||.- +.=+ -=.++++.|+.-+.+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-----~~kVaiITtDtYRI-GA~EQLk~Ya~im~vp~------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-----KKKVAIITTDTYRI-GAVEQLKTYADIMGVPL------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-----CcceEEEEeccchh-hHHHHHHHHHHHhCCce-------------
Confidence 555677789999999888777777762221 123444443 3322 22334444432222111
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----ccceEEEEeCCCCCCCHHHHHHH
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----NIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----~~~~rllLTgTP~~n~~~el~sl 550 (680)
.++.+..-|...+..+.+ +|+|.+|=+-+---... ...-+..+ ....-+.||+|-=.+.+.+++..
T Consensus 264 ------~vv~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~-~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 264 ------EVVYSPKELAEAIEALRD--CDVILVDTAGRSQYDKE-KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred ------EEecCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHH-HHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 233445555555555554 59999997654211111 12222222 34456999999999999999999
Q ss_pred HhhhCCCC
Q psy12466 551 NDFANPGV 558 (680)
Q Consensus 551 l~fl~p~~ 558 (680)
+.++...-
T Consensus 335 f~~~~i~~ 342 (407)
T COG1419 335 FSLFPIDG 342 (407)
T ss_pred hccCCcce
Confidence 99887654
No 394
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=84.61 E-value=23 Score=38.78 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=25.6
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
....+.++.-..|+|||..+-.++..+....
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 3456789999999999999999988876654
No 395
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=84.23 E-value=16 Score=39.07 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=39.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..++|.|......+...+.. ..-.+.-++.-..|+||+..|.+|+..+.-..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDA--GRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHc--CCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 46889999998887765321 12234566789999999999999998887654
No 396
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=84.17 E-value=7 Score=47.08 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=70.9
Q ss_pred CCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcccHHHHHHHhc----ccceEEEEeCCCCCC--CHHHHHHH
Q psy12466 479 VSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKSKLYELMTGL----NIRKRILLSGTPLQN--DLQEFFYL 550 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l----~~~~rllLTgTP~~n--~~~el~sl 550 (680)
...|+++|-..+..++-. +.-..+..+|+||||++.+..+-.+ .++.+ +..+..++|+.|-.. ....+-.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaF-I~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAF-ILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHH-HHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 467888888888776421 2223578999999999964433322 22333 456789999999652 33444444
Q ss_pred HhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeeechhHHhhcCCC--cEEEEEEecC
Q psy12466 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNS--KRETLLVCRA 628 (680)
Q Consensus 551 l~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrtk~~v~~~LP~--k~e~~v~v~m 628 (680)
+.-|.-... ++.=|.-.+|...|-. .....+.|+|
T Consensus 86 mk~L~i~~v-------------------------------------------~l~prf~~~V~~~l~~~~~~V~ei~V~l 122 (814)
T TIGR00596 86 MRNLFLRHV-------------------------------------------YLWPRFHVEVASSLEKHKAEVIELHVSL 122 (814)
T ss_pred HHHhCcCeE-------------------------------------------EEeCCCchHHHHHhccCCCeEEEEEeCC
Confidence 444332211 1111222333333332 3456678999
Q ss_pred CHHHHHHHHHHHHHH
Q psy12466 629 TPLQQSLYLRCVEYW 643 (680)
Q Consensus 629 s~~Q~~lY~~l~~~~ 643 (680)
|+..+++...+.+-.
T Consensus 123 ~~~m~~Iq~~l~~~l 137 (814)
T TIGR00596 123 TDSMSQIQSAILECL 137 (814)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999988887766533
No 397
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=84.15 E-value=7.4 Score=41.83 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.|...+..+.+.+.. ..-.+.-++.-+.|.|||..+.+++..+....
T Consensus 10 ~q~~~~~~L~~~~~~--~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~ 56 (329)
T PRK08058 10 LQPVVVKMLQNSIAK--NRLSHAYLFEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred hHHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 455566655544211 11233348889999999999999998876544
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.10 E-value=15 Score=40.77 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=71.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHH-hcCCCCCCccceEEEEeccc--hHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 400 AILADEMGLGKTLQCIALIWTLL-RQGPYGMPVIRKVLIVTPSS--LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~-~~~~~~~~~~~~~LIV~P~s--ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
.++.-..|.|||.++..++..+. ..+. +++++.-.. ....| .+.+|.....+..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~-------~V~Lit~Dt~R~aA~e--QLk~yAe~lgvp~~------------- 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGK-------SVSLYTTDNYRIAAIE--QLKRYADTMGMPFY------------- 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCC-------eEEEecccchhhhHHH--HHHHHHHhcCCCee-------------
Confidence 45678999999999999987653 3332 344444322 22334 44444332211111
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc--------ccceEEEEeCCCCCCCHHHHH
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL--------NIRKRILLSGTPLQNDLQEFF 548 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l--------~~~~rllLTgTP~~n~~~el~ 548 (680)
....+......+....+|+||+|=+-+..... .....+..+ .....++|+||-=++.+.+..
T Consensus 284 ---------~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 284 ---------PVKDIKKFKETLARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred ---------ehHHHHHHHHHHHhCCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 11112222333444678999999776543222 223333322 224569999999888888888
Q ss_pred HHHhhhCCC
Q psy12466 549 YLNDFANPG 557 (680)
Q Consensus 549 sll~fl~p~ 557 (680)
..+..+.+.
T Consensus 354 ~~f~~~~~~ 362 (432)
T PRK12724 354 KAYESLNYR 362 (432)
T ss_pred HHhcCCCCC
Confidence 777666554
No 399
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=83.97 E-value=2.5 Score=46.68 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
..+.|.+|.-.+|+|||..+-+++..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45688999999999999998877754
No 400
>KOG0923|consensus
Probab=83.86 E-value=3.9 Score=46.99 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec--c-----chHHHHHHHHHHHhCCCCeeEeecCCcc
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP--S-----SLTSNWNDEFKKWLGLTRMCPYHVNQKN 469 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P--~-----sll~qW~~E~~~~~~~~~v~~~~~~~~~ 469 (680)
+.-.|+.-|+|.|||.|.=-++..-.-... .-+|-|. . |+..--.+|+.--++.- |. | +.
T Consensus 280 ~QVLiI~GeTGSGKTTQiPQyL~EaGytk~-------gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e-VG-Y----sI 346 (902)
T KOG0923|consen 280 HQVLIIVGETGSGKTTQIPQYLYEAGYTKG-------GKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE-VG-Y----SI 346 (902)
T ss_pred CcEEEEEcCCCCCccccccHHHHhcccccC-------CceEeecCcchHHHHHHHHHHHHHhCcccccc-cc-e----EE
Confidence 466788999999999997665543221111 1234443 2 23333444443322221 00 0 00
Q ss_pred hhhhhhhcCCCCEEEEeHHHHHHHHH-hhhccCceEEEEcCcccccCcccHHHHHHHhc---ccce-EEEEeCCCCCCCH
Q psy12466 470 KAEDYVYSRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEGHRLKNGKSKLYELMTGL---NIRK-RILLSGTPLQNDL 544 (680)
Q Consensus 470 ~~~~~~~~~~~~vvI~ty~~l~~~~~-~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l---~~~~-rllLTgTP~~n~~ 544 (680)
+.++-. ....-+=.+|-.++.+..- ...--.+.++|+||||.=.-..-.+.-.+..+ +..- .++.|||---..+
T Consensus 347 RFEdcT-SekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekF 425 (902)
T KOG0923|consen 347 RFEDCT-SEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKF 425 (902)
T ss_pred Eecccc-CcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHH
Confidence 100000 0112233566666655432 11123588999999996322222233333322 3333 3777888765566
Q ss_pred HHHHHHHh-hhCCCC
Q psy12466 545 QEFFYLND-FANPGV 558 (680)
Q Consensus 545 ~el~sll~-fl~p~~ 558 (680)
.++|.-.. |..|+.
T Consensus 426 S~fFDdapIF~iPGR 440 (902)
T KOG0923|consen 426 SAFFDDAPIFRIPGR 440 (902)
T ss_pred HHhccCCcEEeccCc
Confidence 66554322 445554
No 401
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=83.84 E-value=22 Score=36.11 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=30.6
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCC-----CCccceEEEEecc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYG-----MPVIRKVLIVTPS 441 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~-----~~~~~~~LIV~P~ 441 (680)
-++|+-..|+|||..++.++..+..-.+.. .....++|+++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E 50 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE 50 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC
Confidence 378999999999999999988765432211 1224578999954
No 402
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=83.77 E-value=3.6 Score=48.51 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=57.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|.++|..++.-+.+.+. .+....++.--.|.|||+.+.+++... + +++|||+|. ....+|.+++
T Consensus 12 ~~~~~Q~~ai~~l~~~~~----~~~~~~ll~Gl~gs~ka~lia~l~~~~---~-------r~vLIVt~~~~~A~~l~~dL 77 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIE----AGEKHQTLLGVTGSGKTFTMANVIARL---Q-------RPTLVLAHNKTLAAQLYSEF 77 (652)
T ss_pred CCChHHHHHHHHHHHhhh----cCCCcEEEEcCCCcHHHHHHHHHHHHh---C-------CCEEEEECCHHHHHHHHHHH
Confidence 477899999998877542 222345688889999999877655432 1 359999998 6669999999
Q ss_pred HHHhCCCCeeEe
Q psy12466 452 KKWLGLTRMCPY 463 (680)
Q Consensus 452 ~~~~~~~~v~~~ 463 (680)
..|+|...|..+
T Consensus 78 ~~~~~~~~v~~f 89 (652)
T PRK05298 78 KEFFPENAVEYF 89 (652)
T ss_pred HHhcCCCeEEEe
Confidence 999998666655
No 403
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=83.75 E-value=6.2 Score=38.86 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=59.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCC
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 480 (680)
++.-.|..|||..-|-.+..+...+. +++|..|.. ...+....+.-..|.+ ..
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g~-------~v~vfkp~i---------D~R~~~~~V~Sr~G~~-----------~~ 60 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAGM-------KVLVFKPAI---------DTRYGVGKVSSRIGLS-----------SE 60 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcCC-------eEEEEeccc---------ccccccceeeeccCCc-----------cc
Confidence 45678999999988877777777663 588888851 1111111111111111 11
Q ss_pred CEEEEeHHHHHHHHHhhhc-cCceEEEEcCcccccCcccHHHHHHHhccc--ceEEEEeCC
Q psy12466 481 PVLIISYEMLIRAYQTIVD-TEFDLLICDEGHRLKNGKSKLYELMTGLNI--RKRILLSGT 538 (680)
Q Consensus 481 ~vvI~ty~~l~~~~~~l~~-~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~--~~rllLTgT 538 (680)
-++|-+-..+...+..... ...++|.+||||-+.. ..-..+..+.. ..++++.|.
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 2333333333333333222 2368999999998843 44445555533 456666664
No 404
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=83.67 E-value=30 Score=36.13 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=60.9
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
-.++.-..|.|||.++..++..+...+ .++++|.-..--..=.+++..|.....+.++........
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g-------~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp------- 139 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQG-------KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADP------- 139 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC-------CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCH-------
Confidence 344557999999999999998886654 246666643211111344454543333333221111000
Q ss_pred CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----------ccceEEEEeCCC
Q psy12466 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----------NIRKRILLSGTP 539 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----------~~~~rllLTgTP 539 (680)
-..............+|+||+|=+-+... +......+..+ .....+++++|-
T Consensus 140 --------~~~~~~~l~~~~~~~~D~ViIDT~G~~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~ 202 (272)
T TIGR00064 140 --------AAVAFDAIQKAKARNIDVVLIDTAGRLQN-KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT 202 (272)
T ss_pred --------HHHHHHHHHHHHHCCCCEEEEeCCCCCcc-hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC
Confidence 01111222223345689999999877654 22222222222 233458888873
No 405
>KOG0740|consensus
Probab=83.64 E-value=2.7 Score=46.40 Aligned_cols=49 Identities=29% Similarity=0.288 Sum_probs=38.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
...+|-+|+-+.|.|||..+.|++..... .+.=|.|.+|...|..|-++
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~a----------tff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGA----------TFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcc----------eEeeccHHHhhhhccChHHH
Confidence 34567889999999999999888865433 25678888999999777654
No 406
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.64 E-value=23 Score=40.24 Aligned_cols=44 Identities=27% Similarity=0.097 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHhhhhhccCCCCc-eEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEG-AILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g-~iLaDemGlGKT~~aiali~~~~~ 423 (680)
-|...+..+.+.+.. ....+ -++.-+.|.|||..|..++..+..
T Consensus 20 Gq~~i~~~L~~~i~~---~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 20 GQEIVVRILKNAVKL---QRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 466666666554321 12233 467999999999999888877654
No 407
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=83.47 E-value=5 Score=39.71 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=55.5
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
-..+|...+|.|||..++.-+..+...|.+ +||. .+-.+=..|......++.+......
T Consensus 6 LkIflG~apGVGKTy~ML~ea~~l~~~G~D--------VViG--~vethgR~et~~l~~gLe~iP~~~i----------- 64 (211)
T PF02702_consen 6 LKIFLGAAPGVGKTYAMLQEAHRLKEQGVD--------VVIG--YVETHGRPETEALLEGLEVIPRKKI----------- 64 (211)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT----------EEEE--E---TT-HHHHHHHCTS-B---EEE-----------
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHCCCC--------EEEE--EecCCCcHHHHHHHcCCCcCCCeeE-----------
Confidence 357899999999999999999999988742 2221 1111112333333333322211100
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcC-cccc--cCcccHHHHHHHhcccceEEEEeCC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDE-GHRL--KNGKSKLYELMTGLNIRKRILLSGT 538 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDE-aH~~--kn~~s~~~~~l~~l~~~~rllLTgT 538 (680)
......+.-+ +.+.+...++++|++|| ||.= .+...+.++-+..|-..-.=..|..
T Consensus 65 ~y~g~~~~E~-----DldaiL~R~P~vvLVDELAHtN~pgsr~~kR~qDVeeLL~aGIdV~TTl 123 (211)
T PF02702_consen 65 EYRGRTLEEM-----DLDAILARRPQVVLVDELAHTNAPGSRHKKRYQDVEELLDAGIDVYTTL 123 (211)
T ss_dssp EETTEEEEE-------HHHHHHH--SEEEES-TT-B--TT-SSSBHHHHHHHHHHTT-EEEEEE
T ss_pred eeCCEecccC-----CHHHHHhcCCCEEEeCcccccCCCCCCCcccHHhHHHHHHCCCeEEEee
Confidence 0011222222 23455566899999999 7742 2345666777666644333333333
No 408
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=83.46 E-value=13 Score=37.74 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=36.0
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
..+...+++-++|.|||..++.++......+. ++++|.-.....+-.+.+..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge-------~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------PGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-------cEEEEEeeCCHHHHHHHHHH
Confidence 34556778999999999999998877665543 47888765444444444443
No 409
>KOG0729|consensus
Probab=83.43 E-value=9 Score=39.42 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=22.6
Q ss_pred hccCCCCceEEEcCCCCChHHHHHHHH
Q psy12466 392 LASLDLEGAILADEMGLGKTLQCIALI 418 (680)
Q Consensus 392 ~~~~~~~g~iLaDemGlGKT~~aiali 418 (680)
+......|.+|.-.+|+|||+.|-|.+
T Consensus 206 lgidppkgvllygppgtgktl~arava 232 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVA 232 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHh
Confidence 445678899999999999999887766
No 410
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=83.22 E-value=1.7 Score=42.05 Aligned_cols=139 Identities=20% Similarity=0.215 Sum_probs=67.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH-HHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW-NDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW-~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
..+.-..|-|||..|++++......+. +++|| -.+...| ..|..-+-. ..+.+............ ..
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~~g~-------~v~iv--QFlKg~~~~GE~~~l~~-~~~~~~~~g~g~~~~~~--~~ 75 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALGHGK-------KVGVI--QFIKGAWPNGERAAFEP-HGVEFQVMGTGFTWETQ--NR 75 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCC-------eEEEE--EEecCCcccChHHHHHh-cCcEEEECCCCCeecCC--Cc
Confidence 445677999999999999988887763 45555 1122223 122222111 11222111110000000 00
Q ss_pred CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc----ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG----KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~----~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
..+. -.-.+.+......+....+|+||+||.-..-+. .......+..-....-++|||.-....+.|+..++
T Consensus 76 ~~~~-~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 76 EADT-AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred HHHH-HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCcee
Confidence 0000 000111222234455678999999998754332 23344444443455579999986655555554443
No 411
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=82.94 E-value=4.2 Score=38.92 Aligned_cols=133 Identities=23% Similarity=0.212 Sum_probs=67.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH-HHH--HHHHhCCCCeeEeecCCc----chhhh
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW-NDE--FKKWLGLTRMCPYHVNQK----NKAED 473 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW-~~E--~~~~~~~~~v~~~~~~~~----~~~~~ 473 (680)
.+.-..|.|||..|++++......+. ++++|= .+...| ..| +-+.+|...+..+..... .....
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~~g~-------~v~~vQ--FlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALGHGY-------RVGVVQ--FLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEE--EeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHH
Confidence 44567899999999999988877763 456531 111112 112 222234332222211100 00000
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc----ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG----KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~----~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~s 549 (680)
... ..+.+......+....+|+||+||.=..-+. .......+..-....-++|||--.+..+.|+..
T Consensus 77 ~~~---------a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 77 IAA---------AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred HHH---------HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 000 0111222233455678999999998665322 233444444444455699999876666666544
Q ss_pred HH
Q psy12466 550 LN 551 (680)
Q Consensus 550 ll 551 (680)
++
T Consensus 148 ~V 149 (159)
T cd00561 148 LV 149 (159)
T ss_pred ee
Confidence 43
No 412
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.90 E-value=6.4 Score=43.35 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=54.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 479 (680)
.+++-=.|.|||.++.-++.++...+. ++|+||-..--.--.++++.......+.+|........
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~~-------kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~P-------- 167 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKGK-------KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDP-------- 167 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcCC-------ceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCH--------
Confidence 566777899999999999999998543 35666654333333444555544455555554221111
Q ss_pred CCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 480 SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 480 ~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
-+...+.++......+|+||+|=|-|+.
T Consensus 168 -------v~Iak~al~~ak~~~~DvvIvDTAGRl~ 195 (451)
T COG0541 168 -------VEIAKAALEKAKEEGYDVVIVDTAGRLH 195 (451)
T ss_pred -------HHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 1123334445555566677777666553
No 413
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=82.84 E-value=6.5 Score=38.28 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=26.5
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
++.-.|+.|||...|..+..+...+. +++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~~-------~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAGK-------KVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--------EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCCC-------eEEEEEec
Confidence 34568999999999998888777653 58888885
No 414
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.83 E-value=28 Score=40.83 Aligned_cols=46 Identities=17% Similarity=0.064 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..+.+.+.. ..-...-|+.-..|.|||..|..++..+.-.
T Consensus 20 GQe~i~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 20 AQEHITHTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 466666665553211 1223446688999999999999999887654
No 415
>KOG0339|consensus
Probab=82.72 E-value=4.4 Score=45.15 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=55.3
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHh--CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWL--GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
.=.||+||+ ++..|-..|.++|. ...++...|+++....+.........+++++=+.+...... ..=.+-.++|+
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 346899996 45678888999885 34566666666543332222225678999999988654432 11234678999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
|||.|+-..
T Consensus 377 DEadrmfdm 385 (731)
T KOG0339|consen 377 DEADRMFDM 385 (731)
T ss_pred echhhhhcc
Confidence 999999764
No 416
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=82.65 E-value=13 Score=43.10 Aligned_cols=45 Identities=22% Similarity=0.108 Sum_probs=29.7
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
|...+..|...+.. ..-.+.-++.-+.|.|||..+-+++..+...
T Consensus 21 qe~iv~~L~~~i~~--~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 21 QDFVVETLKHSIES--NKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred cHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 55555555443321 1122336788999999999999999887643
No 417
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=82.58 E-value=2.7 Score=45.77 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
....|.+|.-+.|+|||..+-+++..+
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 346789999999999999988887643
No 418
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.58 E-value=26 Score=40.05 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=61.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cc---hHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SS---LTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~s---ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
+...|.-..|.|||.++..++..+...+. .+++.+|.- .. -..||...- ..+.+.+...
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~-----gkkVaLIdtDtyRigA~EQLk~ya----~iLgv~v~~a-------- 413 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHA-----PRDVALVTTDTQRVGGREQLHSYG----RQLGIAVHEA-------- 413 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCceEEEecccccccHHHHHHHhh----cccCceeEec--------
Confidence 34445578999999999888877655421 123555543 21 224443221 1111111110
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc----ccceEEEEeCCCCCCCHHHHHH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL----NIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l----~~~~rllLTgTP~~n~~~el~s 549 (680)
.+-..+...+..+ ..+++||||.+-....... ....+..+ .....+++++++-...+.++..
T Consensus 414 -----------~d~~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~-l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 414 -----------DSAESLLDLLERL--RDYKLVLIDTAGMGQRDRA-LAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred -----------CcHHHHHHHHHHh--ccCCEEEecCCCcchhhHH-HHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHH
Confidence 0112233333333 2589999999976532222 11112111 3455688888875555555544
Q ss_pred HHh
Q psy12466 550 LND 552 (680)
Q Consensus 550 ll~ 552 (680)
.+.
T Consensus 480 ~f~ 482 (559)
T PRK12727 480 RFA 482 (559)
T ss_pred HHH
Confidence 433
No 419
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=82.04 E-value=15 Score=37.23 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSN 446 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~q 446 (680)
.+.-.++.-+.|.|||..++.++......+. +++.|+......+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~-------~~~yi~~e~~~~~ 66 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGY-------SVSYVSTQLTTTE 66 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCC-------cEEEEeCCCCHHH
Confidence 3456788899999999999998887765542 4777776543333
No 420
>PRK04195 replication factor C large subunit; Provisional
Probab=81.87 E-value=19 Score=40.93 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.6
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
....+|.-+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5779999999999999988887654
No 421
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=81.81 E-value=2.4 Score=50.64 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=67.7
Q ss_pred eEEEEECcccHHH-HHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHH------HhhhcCCCcE
Q psy12466 194 RVLIVTPSSLTSN-WNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY------QTIVDTEFDL 264 (680)
Q Consensus 194 ~~LIV~P~sl~~n-W~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~------~~l~~~~~~~ 264 (680)
.+|=|.|.-.+.| -.+-++.|.. +..+.+-||+.....+........+|+|||=|++.... ..|.+.+ +
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr--~ 152 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVR--Y 152 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCc--E
Confidence 5688888655544 4555555542 25566777776666655556677889999999997543 3455544 5
Q ss_pred EEEcCCCCCCCCCCC--CCccccCCC----CCCceeccCCCC
Q psy12466 265 LICDEKSLLKPPSGN--SPGNDSGIP----SLPRKSDSGIGS 300 (680)
Q Consensus 265 vI~DEaH~lKN~~s~--~~~a~~~l~----~~~r~~LTG~~~ 300 (680)
||+||.|-+.+.+-. .+-++.+|. ...|+.||-+..
T Consensus 153 VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~ 194 (814)
T COG1201 153 VIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVG 194 (814)
T ss_pred EEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccC
Confidence 999999999976533 344443333 234888887544
No 422
>PRK09183 transposase/IS protein; Provisional
Probab=81.61 E-value=13 Score=38.42 Aligned_cols=30 Identities=37% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.+.+|.-+.|.|||..+.+++......+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G 130 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAG 130 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 356788889999999999999876655544
No 423
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=81.54 E-value=6.8 Score=50.88 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=77.2
Q ss_pred ccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHH
Q psy12466 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWN 448 (680)
Q Consensus 369 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~ 448 (680)
.+...|-+-|++|+..++. ...+-.+|.--.|+|||.+.-+++..+....... ...++.++|+.-...
T Consensus 963 ~~~~~Lt~~Q~~Av~~il~-------s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~---~~~V~glAPTgrAAk-- 1030 (1747)
T PRK13709 963 ELMEGLTSGQRAATRMILE-------STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESE---RPRVVGLGPTHRAVG-- 1030 (1747)
T ss_pred HhcCCCCHHHHHHHHHHHh-------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhccc---CceEEEECCcHHHHH--
Confidence 3445688999999988764 2345788889999999988766665554321110 124788899754422
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~ 528 (680)
++.. .+ ........+.... +.+.. .........+++|||||-.+.+ ....+.+..+.
T Consensus 1031 -~L~e-~G---------i~A~TI~s~L~~~---------~~~~~-~~~~~~~~~~llIVDEaSMv~~--~~m~~Ll~~~~ 1087 (1747)
T PRK13709 1031 -EMRS-AG---------VDAQTLASFLHDT---------QLQQR-SGETPDFSNTLFLLDESSMVGN--TDMARAYALIA 1087 (1747)
T ss_pred -HHHh-cC---------cchhhHHHHhccc---------ccccc-cccCCCCCCcEEEEEccccccH--HHHHHHHHhhh
Confidence 2222 11 0111111110000 00000 0001113458999999998843 33444455444
Q ss_pred -cceEEEEeCCCCCCCH
Q psy12466 529 -IRKRILLSGTPLQNDL 544 (680)
Q Consensus 529 -~~~rllLTgTP~~n~~ 544 (680)
...|++|-|=+-|...
T Consensus 1088 ~~garvVLVGD~~QL~s 1104 (1747)
T PRK13709 1088 AGGGRAVSSGDTDQLQA 1104 (1747)
T ss_pred cCCCEEEEecchHhcCC
Confidence 3578999998766533
No 424
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=81.18 E-value=8 Score=46.26 Aligned_cols=70 Identities=21% Similarity=0.172 Sum_probs=50.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|-|-|+++|.. ..+.+++....|+|||.+.++-+.++....... ...+|+|+-+ .....-.+.+
T Consensus 4 ~Ln~~Q~~av~~-----------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~---p~~IL~lTFTnkAA~em~~Rl 69 (715)
T TIGR01075 4 GLNDKQREAVAA-----------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENAS---PHSIMAVTFTNKAAAEMRHRI 69 (715)
T ss_pred ccCHHHHHHHcC-----------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCC---HHHeEeeeccHHHHHHHHHHH
Confidence 478899999832 235678888999999999999888887653211 2468999986 5556666667
Q ss_pred HHHhC
Q psy12466 452 KKWLG 456 (680)
Q Consensus 452 ~~~~~ 456 (680)
.+..+
T Consensus 70 ~~~~~ 74 (715)
T TIGR01075 70 GALLG 74 (715)
T ss_pred HHHhc
Confidence 66544
No 425
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=80.31 E-value=23 Score=36.56 Aligned_cols=50 Identities=22% Similarity=0.160 Sum_probs=35.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhc-CCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQ-GPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~-~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
.+.-.+|+-.+|.|||..++.++...... + .+++++.-..-..+....+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g-------~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHG-------VRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC-------ceEEEEEcccCHHHHHHHHH
Confidence 34567899999999999999988877654 3 24788876544444444443
No 426
>PRK11054 helD DNA helicase IV; Provisional
Probab=80.21 E-value=7.8 Score=45.94 Aligned_cols=70 Identities=24% Similarity=0.276 Sum_probs=48.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHH-H
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDE-F 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E-~ 451 (680)
.|.+-|+++|.. ..+..++....|+|||.+.++-+.++...+.. ....+|+++.+.-..+...+ +
T Consensus 196 ~L~~~Q~~av~~-----------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~---~~~~IL~ltft~~AA~em~eRL 261 (684)
T PRK11054 196 PLNPSQARAVVN-----------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQA---QPEQILLLAFGRQAAEEMDERI 261 (684)
T ss_pred CCCHHHHHHHhC-----------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC---CHHHeEEEeccHHHHHHHHHHH
Confidence 488899999842 12345666779999999999998888765421 12469999998666555444 6
Q ss_pred HHHhC
Q psy12466 452 KKWLG 456 (680)
Q Consensus 452 ~~~~~ 456 (680)
...++
T Consensus 262 ~~~lg 266 (684)
T PRK11054 262 RERLG 266 (684)
T ss_pred HHhcC
Confidence 65544
No 427
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=80.16 E-value=16 Score=39.15 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=34.6
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
++|.|...-.-+.+.+.. ..-.+.-++.-+.|+||+..|.+++..+.-..
T Consensus 3 ~yPW~~~~~~~l~~~~~~--~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQ--GLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHc--CCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 467777666666554321 12234555788999999999999998887654
No 428
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=80.15 E-value=38 Score=36.21 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.++.-..|+|||..+.+++..+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHh
Confidence 35678999999999999998887665
No 429
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=80.01 E-value=21 Score=38.44 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=37.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
.++|+|...-+.+.+.+.. ..-.+.-++.-+.|+||+..|.+++..+.-..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~--~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~ 53 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQA--GRGHHALLIQALPGMGDDALIYALSRWLMCQQP 53 (334)
T ss_pred CCCCCChHHHHHHHHHHHc--CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 3678888888777665321 122345567899999999999999998876543
No 430
>KOG0739|consensus
Probab=79.76 E-value=3.7 Score=42.95 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=50.8
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
-+|.+|.-.+|+||+..|-|.+...- ..+.-|-.+-|+..|.-|-++...
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn----------STFFSvSSSDLvSKWmGESEkLVk-------------------- 215 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN----------STFFSVSSSDLVSKWMGESEKLVK-------------------- 215 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC----------CceEEeehHHHHHHHhccHHHHHH--------------------
Confidence 46788899999999998877664321 124555556788999888766421
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
.....-+...+.+|++||...+..
T Consensus 216 ---------------nLFemARe~kPSIIFiDEiDslcg 239 (439)
T KOG0739|consen 216 ---------------NLFEMARENKPSIIFIDEIDSLCG 239 (439)
T ss_pred ---------------HHHHHHHhcCCcEEEeehhhhhcc
Confidence 222333456788999999987643
No 431
>CHL00176 ftsH cell division protein; Validated
Probab=79.57 E-value=12 Score=43.98 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
...|.+|.-++|+|||..+=+++..
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999998888654
No 432
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=79.40 E-value=2 Score=50.13 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=31.6
Q ss_pred cCCCCEEEEehhHHHHHHHhhhc--CCCcEEEEcCCCCCCCCCCCC
Q psy12466 237 SRVSPVLIISYEMLIRAYQTIVD--TEFDLLICDEKSLLKPPSGNS 280 (680)
Q Consensus 237 ~~~~~V~itsYe~l~~~~~~l~~--~~~~~vI~DEaH~lKN~~s~~ 280 (680)
....+|+|||+.++......-.. ..++.||+||||.|-+..++.
T Consensus 180 a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d~A~~~ 225 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQNISRV 225 (636)
T ss_pred cccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHHHHHHH
Confidence 35679999999999765432111 347999999999997655443
No 433
>KOG0730|consensus
Probab=79.39 E-value=9.4 Score=44.09 Aligned_cols=117 Identities=17% Similarity=0.197 Sum_probs=67.7
Q ss_pred ccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cchHHHHHHHHHHHhCCCCeeEeecCCcchh
Q psy12466 393 ASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA 471 (680)
Q Consensus 393 ~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~ 471 (680)
.-...+|.+|.-++|.|||..|=+++..... .++-++ .-|+..|..|=++.
T Consensus 464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~-----------nFlsvkgpEL~sk~vGeSEr~----------------- 515 (693)
T KOG0730|consen 464 GISPPKGVLLYGPPGCGKTLLAKALANEAGM-----------NFLSVKGPELFSKYVGESERA----------------- 515 (693)
T ss_pred cCCCCceEEEECCCCcchHHHHHHHhhhhcC-----------CeeeccCHHHHHHhcCchHHH-----------------
Confidence 3456788999999999999998887754322 133333 45667775554432
Q ss_pred hhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc-----cHHHHHH----Hhc----ccceEEEEeCC
Q psy12466 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK-----SKLYELM----TGL----NIRKRILLSGT 538 (680)
Q Consensus 472 ~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~-----s~~~~~l----~~l----~~~~rllLTgT 538 (680)
++...+.-+...+.++++||...+.... ...-+.+ ..+ ..+..+++-||
T Consensus 516 ------------------ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 516 ------------------IREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAAT 577 (693)
T ss_pred ------------------HHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEecc
Confidence 2222333345567899999998873221 1122222 222 34466777777
Q ss_pred CCCCCHHHHHHHHhhhCCCCCC
Q psy12466 539 PLQNDLQEFFYLNDFANPGVLG 560 (680)
Q Consensus 539 P~~n~~~el~sll~fl~p~~l~ 560 (680)
- ++..+= -.+++|+.|+
T Consensus 578 N---Rpd~ID--~ALlRPGRlD 594 (693)
T KOG0730|consen 578 N---RPDMID--PALLRPGRLD 594 (693)
T ss_pred C---ChhhcC--HHHcCCcccc
Confidence 4 333331 1356777764
No 434
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=79.38 E-value=1.6 Score=51.83 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=30.7
Q ss_pred CCCCEEEEehhHHHHHHHh-----hhcCCCcEEEEcCCCCCCCCCCC
Q psy12466 238 RVSPVLIISYEMLIRAYQT-----IVDTEFDLLICDEKSLLKPPSGN 279 (680)
Q Consensus 238 ~~~~V~itsYe~l~~~~~~-----l~~~~~~~vI~DEaH~lKN~~s~ 279 (680)
...+|+|||...+..+... |-....+++|+||||+|-...+.
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d~A~~ 264 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPDVARD 264 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHHHHHH
Confidence 5579999999999776632 21234788999999999754443
No 435
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.32 E-value=9.2 Score=45.63 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=21.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
.....||.-++|+|||..+-+++...
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999888777543
No 436
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=79.18 E-value=13 Score=44.09 Aligned_cols=69 Identities=25% Similarity=0.322 Sum_probs=48.3
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
|.|-|+++|.+ ..+.+++-...|+|||.+.+.-+..+....... .+.+|+|+.+ ....+-.+.+.
T Consensus 2 Ln~~Q~~av~~-----------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~---p~~IL~vTFt~~Aa~em~~Rl~ 67 (664)
T TIGR01074 2 LNPQQQEAVEY-----------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYK---ARNIAAVTFTNKAAREMKERVA 67 (664)
T ss_pred CCHHHHHHHhC-----------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCC---HHHeEEEeccHHHHHHHHHHHH
Confidence 66788888843 235677888899999999999888887642211 2357777664 66677777777
Q ss_pred HHhC
Q psy12466 453 KWLG 456 (680)
Q Consensus 453 ~~~~ 456 (680)
+.++
T Consensus 68 ~~l~ 71 (664)
T TIGR01074 68 KTLG 71 (664)
T ss_pred HHhC
Confidence 6554
No 437
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.02 E-value=1.9 Score=51.33 Aligned_cols=60 Identities=18% Similarity=0.479 Sum_probs=38.2
Q ss_pred HHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHH--Hhh-hcCCCcEEEEcCCCCCCC
Q psy12466 209 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY--QTI-VDTEFDLLICDEKSLLKP 275 (680)
Q Consensus 209 ~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~--~~l-~~~~~~~vI~DEaH~lKN 275 (680)
+|+.++.....+++|..... .....+|+|.+|..+-.-. ..+ ....-.+||+||||+|=+
T Consensus 172 EdL~~~g~~~~~CPY~~sr~-------~~~~advIi~pYnyl~dp~~r~~~~~~l~~~ivI~DEAHNL~d 234 (705)
T TIGR00604 172 EDLVEYGELLGLCPYFATRK-------MLPFANIVLLPYQYLLDPKIRSAVSIELKDSIVIFDEAHNLDN 234 (705)
T ss_pred HHHHHhcccCCCCccHHHHH-------hhhcCCEEEechHHhcCHHHHHHhhcccccCEEEEECccchHH
Confidence 56666665556777765432 1245799999999884211 111 223347899999999954
No 438
>KOG0651|consensus
Probab=79.01 E-value=4.2 Score=42.83 Aligned_cols=76 Identities=21% Similarity=0.198 Sum_probs=50.6
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
....|++|.-..|.|||++|=++++.+-.. +|.++...++....-|-.+.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~n----------fl~v~ss~lv~kyiGEsaRl-------------------- 213 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVN----------FLKVVSSALVDKYIGESARL-------------------- 213 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCc----------eEEeeHhhhhhhhcccHHHH--------------------
Confidence 456899999999999999998888765432 46666666665544333321
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn 515 (680)
++..+....+....++.+||.+.+.+
T Consensus 214 ---------------IRemf~yA~~~~pciifmdeiDAigG 239 (388)
T KOG0651|consen 214 ---------------IRDMFRYAREVIPCIIFMDEIDAIGG 239 (388)
T ss_pred ---------------HHHHHHHHhhhCceEEeehhhhhhcc
Confidence 22233334445568888999888754
No 439
>PRK04328 hypothetical protein; Provisional
Probab=78.91 E-value=22 Score=36.56 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=34.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
.+.-.+++-++|+|||..++.++......+. ++++|.=.....+-.+.+..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge-------~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------PGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------cEEEEEeeCCHHHHHHHHHH
Confidence 3445677999999999999999887665553 36777654444443343333
No 440
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=78.71 E-value=19 Score=40.86 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=60.9
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
..+.-.++.-++|.|||..++.|+......+. ++|++.-.--..|-...+..+--+. ..+
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge-------~~~y~s~eEs~~~i~~~~~~lg~~~-------------~~~ 320 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKE-------RAILFAYEESRAQLLRNAYSWGIDF-------------EEM 320 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEeeCCHHHHHHHHHHcCCCh-------------HHH
Confidence 34555788899999999999999988877653 4788887777777766666542110 000
Q ss_pred hhcCCCCEEEEe--------HHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 475 VYSRVSPVLIIS--------YEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 475 ~~~~~~~vvI~t--------y~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
. ....+.+.. -+.+......+...+.++||+|=...+
T Consensus 321 ~--~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 321 E--QQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred h--hCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 0 001122222 233444445566678899999976654
No 441
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=78.68 E-value=10 Score=45.27 Aligned_cols=135 Identities=20% Similarity=0.246 Sum_probs=77.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.|.|.-.-+|=|||+++..-+....-.+ +.+.||..+ .|. ..|...+-+|.+...-+...+.... ...
T Consensus 94 ~g~iaEM~TGEGKTL~atlp~ylnaL~g-------kgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~-ek~ 165 (822)
T COG0653 94 LGDIAEMRTGEGKTLVATLPAYLNALAG-------KGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPE-EKR 165 (822)
T ss_pred CCceeeeecCCchHHHHHHHHHHHhcCC-------CCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChH-HHH
Confidence 6788889999999999865443333332 237777776 444 7899999999875433333333221 111
Q ss_pred hhhcCCCCEEEEeHHHHHHHH---------HhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCH
Q psy12466 474 YVYSRVSPVLIISYEMLIRAY---------QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~---------~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~ 544 (680)
.. -.+||.-+|-+.+--++ +.....+..+.|+||+..+- --.++..+.+|| |...+.
T Consensus 166 ~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL-----------IDEARtPLiISG-~~~~~~ 231 (822)
T COG0653 166 AA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL-----------IDEARTPLIISG-PAEDSS 231 (822)
T ss_pred HH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee-----------eeccccceeeec-ccccCc
Confidence 11 12444444433332111 11223468899999997541 114556699999 888874
Q ss_pred HHHHHHHhhh
Q psy12466 545 QEFFYLNDFA 554 (680)
Q Consensus 545 ~el~sll~fl 554 (680)
.....+.+|+
T Consensus 232 ~~Y~~~~~~v 241 (822)
T COG0653 232 ELYKKVDDLV 241 (822)
T ss_pred hHHHHHHHHH
Confidence 4433333343
No 442
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=78.41 E-value=1.8 Score=52.86 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=27.9
Q ss_pred CCEEEEehhHHHHHHHhhhc--CCCcEEEEcCCCCCCCCCC
Q psy12466 240 SPVLIISYEMLIRAYQTIVD--TEFDLLICDEKSLLKPPSG 278 (680)
Q Consensus 240 ~~V~itsYe~l~~~~~~l~~--~~~~~vI~DEaH~lKN~~s 278 (680)
.+|+||||..+..+...-.. ...+.+|+||||+|-....
T Consensus 417 AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~ 457 (850)
T TIGR01407 417 AQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAE 457 (850)
T ss_pred CCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHH
Confidence 56999999999776532111 3457999999999965433
No 443
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=78.34 E-value=3 Score=43.73 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=65.3
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWNDEFKK 453 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~E~~~ 453 (680)
-+-|.++|.+ ..+..++-...|+|||.+.+.-+..+...+.. ...++|+|+++. ....-.+.+..
T Consensus 2 ~~eQ~~~i~~-----------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~---~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 2 TDEQRRIIRS-----------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV---PPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp -HHHHHHHHS------------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS---TGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-----------CCCCEEEEeCCCCCchHHHHHHHHHhhccccC---ChHHheecccCHHHHHHHHHHHHH
Confidence 3557777755 23566777789999999999888877766532 134699999974 44555555555
Q ss_pred HhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH----hhhccCceEEEEcCcc
Q psy12466 454 WLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ----TIVDTEFDLLICDEGH 511 (680)
Q Consensus 454 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~----~l~~~~~~~vIlDEaH 511 (680)
.++..... ......... .......+.|.|++.+...+- .......+.-|+|+..
T Consensus 68 ~l~~~~~~---~~~~~~~~~-~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 68 LLEEEQQE---SSDNERLRR-QLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HHHHCCHC---CTT-HHHHH-HHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred hcCccccc---ccccccccc-cccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 43221000 000001111 111245678888887754321 1222344566677665
No 444
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=78.32 E-value=14 Score=38.26 Aligned_cols=38 Identities=24% Similarity=0.187 Sum_probs=28.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
+.-.+++-++|+|||..++.++......+. +++++.-.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge-------~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGN-------PVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCC-------cEEEEEec
Confidence 334677899999999999999887665543 47877743
No 445
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=78.32 E-value=5 Score=48.06 Aligned_cols=84 Identities=11% Similarity=0.102 Sum_probs=53.8
Q ss_pred CeEEEEECcccHH----HHHHHHHHHhCCCCeeEEeecCC-cchhhhcccCCCCEEEEeh-----hHHHHHH----Hhhh
Q psy12466 193 LRVLIVTPSSLTS----NWNDEFKKWLGLTRMCPYHVNQK-NKAEDYVYSRVSPVLIISY-----EMLIRAY----QTIV 258 (680)
Q Consensus 193 ~~~LIV~P~sl~~----nW~~E~~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~V~itsY-----e~l~~~~----~~l~ 258 (680)
+.++||+|+..+. .|-..+-+|++ .++..+.++.. ..... .....+|++.|- ++++... ....
T Consensus 120 ~~v~VvTpt~~LA~qd~e~~~~l~~~lG-l~v~~i~g~~~~~~~r~--~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~ 196 (790)
T PRK09200 120 KGVHLITVNDYLAKRDAEEMGQVYEFLG-LTVGLNFSDIDDASEKK--AIYEADIIYTTNSELGFDYLRDNLADSKEDKV 196 (790)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCcHHHHH--HhcCCCEEEECCccccchhHHhccccchhhhc
Confidence 3689999988864 58888888876 56666655543 22222 223478998884 4444422 1233
Q ss_pred cCCCcEEEEcCCCCCCCCCCC
Q psy12466 259 DTEFDLLICDEKSLLKPPSGN 279 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~s~ 279 (680)
..+++++|+||+++|-=-.+.
T Consensus 197 ~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 197 QRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred ccccceEEEeccccceeccCC
Confidence 367899999999988654444
No 446
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=78.20 E-value=5.8 Score=46.84 Aligned_cols=69 Identities=26% Similarity=0.280 Sum_probs=49.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~E 450 (680)
...|+.|++....+.+. ..++..+++=..+|+|||+..++.+........ ++++|.+++. +..|-.++
T Consensus 14 ~~~r~~Q~~~~~~v~~a-----~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~------~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 14 FEPRPEQREMAEAVAEA-----LKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG------KKVIISTRTKALQEQLLEE 82 (654)
T ss_pred CCCCHHHHHHHHHHHHH-----HcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC------CcEEEECCCHHHHHHHHHh
Confidence 45899999998888754 244566899999999999999887777665542 2466666664 44555554
Q ss_pred H
Q psy12466 451 F 451 (680)
Q Consensus 451 ~ 451 (680)
.
T Consensus 83 ~ 83 (654)
T COG1199 83 D 83 (654)
T ss_pred h
Confidence 3
No 447
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.20 E-value=29 Score=38.07 Aligned_cols=88 Identities=23% Similarity=0.188 Sum_probs=50.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-c---chHHHHHHHHHHHhCCCCeeEeecCCcchhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-S---SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~---sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~ 472 (680)
+.-.+++-..|.|||.++..++..+...+. ++.+|+- + ..+.||..-... ..+.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~-------~V~lItaDtyR~gAveQLk~yae~----lgvpv~~-------- 266 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNR-------TVGFITTDTFRSGAVEQFQGYADK----LDVELIV-------- 266 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEEeCCccCccHHHHHHHHhhc----CCCCEEe--------
Confidence 334556778999999999988877765542 3555554 2 246777654332 2221111
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHhhhc-cCceEEEEcCccccc
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQTIVD-TEFDLLICDEGHRLK 514 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~l~~-~~~~~vIlDEaH~~k 514 (680)
..+...+...+..+.. ..+|+||+|=+-+..
T Consensus 267 -----------~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 267 -----------ATSPAELEEAVQYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred -----------cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCc
Confidence 1223334333343432 458999999887654
No 448
>KOG0744|consensus
Probab=78.03 E-value=11 Score=39.97 Aligned_cols=96 Identities=26% Similarity=0.196 Sum_probs=58.8
Q ss_pred hhhhccccCCCCCCCccccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 346 MEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.++.|...- ....++..|..|-..++.|--.++....-..++=.+|--.+|+|||-.+=|++..+.-+.
T Consensus 135 ~eF~glWEsLi---------yds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~ 205 (423)
T KOG0744|consen 135 AEFDGLWESLI---------YDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRT 205 (423)
T ss_pred hhhhhhHHHHh---------hcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeee
Confidence 45677787532 334577888888888887765543322222334455667999999999988888765432
Q ss_pred CCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 426 PYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 426 ~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
.... .+..||=.-. ++...|-.|-.
T Consensus 206 ~~~y--~~~~liEinshsLFSKWFsESg 231 (423)
T KOG0744|consen 206 NDRY--YKGQLIEINSHSLFSKWFSESG 231 (423)
T ss_pred cCcc--ccceEEEEehhHHHHHHHhhhh
Confidence 2111 1224555544 67788866643
No 449
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=77.95 E-value=3 Score=49.18 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=65.2
Q ss_pred CCeEEEEECcccHHH--------HHHHH-HHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHH---HHh---
Q psy12466 192 ILRVLIVTPSSLTSN--------WNDEF-KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA---YQT--- 256 (680)
Q Consensus 192 ~~~~LIV~P~sl~~n--------W~~E~-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~---~~~--- 256 (680)
.-+++||||+-.|.- -.++| .......+...|..+.......+.......|+|++...+.+. ...
T Consensus 104 ~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~ 183 (985)
T COG3587 104 LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINS 183 (985)
T ss_pred ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHhhccCCCceEEEEehhhhccccccccccch
Confidence 558899999765532 34455 444444566666665333334455555566888888777654 211
Q ss_pred ------------------hhcCCCcEEEEcCCCCCCCCCCCCCccccCCCCCC--ceecc
Q psy12466 257 ------------------IVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLP--RKSDS 296 (680)
Q Consensus 257 ------------------l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~--r~~LT 296 (680)
|...+ -+||+||=|++.-. ++.+++++++.+.. |+.-|
T Consensus 184 ~s~~~~~~~~~~~spvd~la~~r-PIvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgAT 241 (985)
T COG3587 184 ESMENTNLFNGATSPVDALASMR-PIVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGAT 241 (985)
T ss_pred hhhcccCccccccCHHHHHHhcC-CEEEecChhhcccc-hHHHHHHHhhCceEEEEeccc
Confidence 22222 26899999999865 78888889888875 44433
No 450
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=77.70 E-value=23 Score=36.52 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=18.8
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
..+..+++.-+.|.|||..+-.++..+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356677888889999997554444433
No 451
>KOG0338|consensus
Probab=77.70 E-value=3.4 Score=46.05 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCCeEEEEECccc----HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhc---CCCc
Q psy12466 191 YILRVLIVTPSSL----TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD---TEFD 263 (680)
Q Consensus 191 ~~~~~LIV~P~sl----~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~---~~~~ 263 (680)
.+-|+||+||+-= +.+--+.+..|+. ..++.-+|+-.-+.+........+|+|.+=+.+..+...-.. -...
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~-I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiE 329 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTD-ITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIE 329 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhcc-ceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCcccccee
Confidence 3669999999754 4567778888886 555555555444444444345578999999988776653222 3356
Q ss_pred EEEEcCCCCCC
Q psy12466 264 LLICDEKSLLK 274 (680)
Q Consensus 264 ~vI~DEaH~lK 274 (680)
++|+|||.|+-
T Consensus 330 VLvlDEADRML 340 (691)
T KOG0338|consen 330 VLVLDEADRML 340 (691)
T ss_pred EEEechHHHHH
Confidence 79999999874
No 452
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=77.60 E-value=12 Score=48.08 Aligned_cols=143 Identities=16% Similarity=0.101 Sum_probs=77.4
Q ss_pred ccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHH
Q psy12466 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWN 448 (680)
Q Consensus 369 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~ 448 (680)
.+...|-+-|++++..++. ...+-++|.-..|+|||.+.-+++..+....... ...++.++|++-...=.
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLt-------s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~---g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILE-------TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESE---RPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred hhhcccCHHHHHHHHHHHh-------CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhcc---CceEEEEechHHHHHHH
Confidence 3445789999999987754 2345688889999999998655554443211000 12477889975442221
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~ 528 (680)
.+. + ........+.... . .+. ....-.....+++|||||-.+.+ ..+.+.+..+.
T Consensus 901 ~e~----G---------i~A~TIasfL~~~--~-------~~~-~~~~~~~~~~~llIVDEASMV~~--~~m~~ll~~~~ 955 (1623)
T PRK14712 901 RSA----G---------VDAQTLASFLHDT--Q-------LQQ-RSGETPDFSNTLFLLDESSMVGN--TDMARAYALIA 955 (1623)
T ss_pred HHh----C---------chHhhHHHHhccc--c-------chh-hcccCCCCCCcEEEEEccccccH--HHHHHHHHhhh
Confidence 221 1 0000011110000 0 000 00001113468999999998843 33444444443
Q ss_pred -cceEEEEeCCCCCCCHHH
Q psy12466 529 -IRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 529 -~~~rllLTgTP~~n~~~e 546 (680)
...|++|-|=+-|....+
T Consensus 956 ~~garvVLVGD~~QL~sV~ 974 (1623)
T PRK14712 956 AGGGRAVASGDTDQLQAIA 974 (1623)
T ss_pred hCCCEEEEEcchhhcCCCC
Confidence 357899999987775544
No 453
>CHL00206 ycf2 Ycf2; Provisional
Probab=77.49 E-value=8.7 Score=49.80 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=30.5
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
...+|.+|.-.+|+|||..|=|++..... |++-|....++..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~V----------PFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYV----------PFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCC----------ceEEEEHHHHhhcc
Confidence 45779999999999999998887754321 24555555666655
No 454
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=77.46 E-value=5.1 Score=43.95 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=21.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.++++++..+.|.|||..+-.++..+...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 45667777789999998777766666554
No 455
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=77.37 E-value=13 Score=44.58 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=49.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|.|-|+++|.. ..+..++-...|+|||.+.+.-+.++....... ...+|+|+-+ .....-++.
T Consensus 8 ~~Ln~~Q~~av~~-----------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~---p~~IL~lTFT~kAA~Em~~R 73 (721)
T PRK11773 8 DSLNDKQREAVAA-----------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENAS---PYSIMAVTFTNKAAAEMRHR 73 (721)
T ss_pred HhcCHHHHHHHhC-----------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCC---hhHeEeeeccHHHHHHHHHH
Confidence 3588999999843 235677778899999999999888887643211 2458999886 455666666
Q ss_pred HHHHhC
Q psy12466 451 FKKWLG 456 (680)
Q Consensus 451 ~~~~~~ 456 (680)
+.+..+
T Consensus 74 l~~~~~ 79 (721)
T PRK11773 74 IEQLLG 79 (721)
T ss_pred HHHHhc
Confidence 666544
No 456
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=76.98 E-value=6.2 Score=39.94 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=18.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~ 420 (680)
-...||.-.+|+|||..|-.++..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCccchhHHHHHHHhc
Confidence 457999999999999877655544
No 457
>PRK04132 replication factor C small subunit; Provisional
Probab=76.96 E-value=8.9 Score=46.30 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=36.7
Q ss_pred CceEEEEcCcccccCc-ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCC
Q psy12466 501 EFDLLICDEGHRLKNG-KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVL 559 (680)
Q Consensus 501 ~~~~vIlDEaH~~kn~-~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l 559 (680)
++.++|+||||++... ...+.+.+.......+++|+.++...-+.-+.|-+..+.-..+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~l 689 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL 689 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCC
Confidence 4789999999999432 1222233333356778999988876665556665544443333
No 458
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=76.96 E-value=58 Score=36.67 Aligned_cols=46 Identities=20% Similarity=0.065 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-|...+..+.+.+.. ..-.+.-|+.-+.|+|||..|.+++..+...
T Consensus 21 Gq~~~v~~L~~~i~~--~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 21 GQDAVVAVLKNALRF--NRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred CcHHHHHHHHHHHHc--CCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 466667666654321 1123345788999999999999999887654
No 459
>PRK06904 replicative DNA helicase; Validated
Probab=76.91 E-value=34 Score=38.81 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=65.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEe-ecCCcchh---
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPY-HVNQKNKA--- 471 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~-~~~~~~~~--- 471 (680)
++.=.|||.-+|+|||.-++.++........ .+++++....-..++...+-.........-+ .+..-...
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g------~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~ 293 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASE------KPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWA 293 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcC------CeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHH
Confidence 3445789999999999999888876654321 3589998887777777665544332221111 11010100
Q ss_pred --hhh-hhc-CCCCEEEE-----eHHHHHHHHHhhhc--cCceEEEEcCcccccC
Q psy12466 472 --EDY-VYS-RVSPVLII-----SYEMLIRAYQTIVD--TEFDLLICDEGHRLKN 515 (680)
Q Consensus 472 --~~~-~~~-~~~~vvI~-----ty~~l~~~~~~l~~--~~~~~vIlDEaH~~kn 515 (680)
... ... ...+++|. +.+.++.....+.. ...++||||=-|.+..
T Consensus 294 ~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 294 KISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 000 011 12346663 44555554444432 2588999998888753
No 460
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=76.83 E-value=4.2 Score=50.19 Aligned_cols=107 Identities=9% Similarity=0.047 Sum_probs=55.7
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchh--hhc----ccCCCCEEEEehhHHHH------HHHhhh-
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE--DYV----YSRVSPVLIISYEMLIR------AYQTIV- 258 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~V~itsYe~l~~------~~~~l~- 258 (680)
..+|||+|. +|+......+... + .+...+.++...... ... .....+|+++|=|.+.. ....+.
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~-G-I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~ 578 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQA-N-IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNS 578 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhC-C-CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhh
Confidence 468999996 4544344444331 1 333333333221111 111 11457899999998742 122222
Q ss_pred cCCCcEEEEcCCCCCCCCCCCC---Cc----cccCCCCCCceeccCCCCC
Q psy12466 259 DTEFDLLICDEKSLLKPPSGNS---PG----NDSGIPSLPRKSDSGIGSL 301 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~s~~---~~----a~~~l~~~~r~~LTG~~~~ 301 (680)
.....++|+||||.+-.+...- ++ ....+.....++||.+.+.
T Consensus 579 ~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~ 628 (1195)
T PLN03137 579 RGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATA 628 (1195)
T ss_pred ccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCH
Confidence 2447889999999996653210 11 1122334456777765533
No 461
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=76.41 E-value=7.7 Score=39.77 Aligned_cols=94 Identities=23% Similarity=0.404 Sum_probs=51.0
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCccceEEEE--eccchH-----------H----------HHHHHHHHHhCCCCee
Q psy12466 405 EMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV--TPSSLT-----------S----------NWNDEFKKWLGLTRMC 461 (680)
Q Consensus 405 emGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV--~P~sll-----------~----------qW~~E~~~~~~~~~v~ 461 (680)
-=|.|||..+.+++..+...+. ++|+| +|..++ . .|.+...+..++..+.
T Consensus 10 kGGvG~TTltAnLA~aL~~~G~-------~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~L 82 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALARLGE-------SVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDFL 82 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCCC-------cEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEEE
Confidence 3488999999999999998874 36665 443333 2 2333444444444444
Q ss_pred EeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh-ccCceEEEEcCcc
Q psy12466 462 PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV-DTEFDLLICDEGH 511 (680)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~-~~~~~~vIlDEaH 511 (680)
.|..........+.. +...-..+.+....+. ...+++||+|=.+
T Consensus 83 PfG~l~~~~~~~~~~------l~~~~~~l~~~l~~l~~~~~~~~iliD~P~ 127 (243)
T PF06564_consen 83 PFGQLTEAEREAFEQ------LAQDPQWLARALAALKALGPYDWILIDTPP 127 (243)
T ss_pred cCCCCCHHHHHHHHH------hhcCHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 444332222211100 1112233344445555 5678999999765
No 462
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=76.29 E-value=19 Score=34.91 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=22.8
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
+.-++.-+.|.|||..+..++..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 456788999999999999999888754
No 463
>PHA02518 ParA-like protein; Provisional
Probab=76.20 E-value=22 Score=34.86 Aligned_cols=38 Identities=34% Similarity=0.538 Sum_probs=27.6
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe--ccchHHHHHH
Q psy12466 405 EMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT--PSSLTSNWND 449 (680)
Q Consensus 405 emGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~--P~sll~qW~~ 449 (680)
-=|.|||..++.++..+...+. ++|+|- |..-...|..
T Consensus 9 KGGvGKTT~a~~la~~la~~g~-------~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGH-------KVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCC-------eEEEEeCCCCCChHHHHH
Confidence 3479999999999998887763 466653 4456677854
No 464
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=76.20 E-value=21 Score=47.52 Aligned_cols=150 Identities=18% Similarity=0.191 Sum_probs=82.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E 450 (680)
..|-+-|++++.-++. ...+-.+|--..|+|||.+.-+++......+ .++++++|+.-. ....++
T Consensus 428 ~~Ls~~Q~~Av~~il~-------s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G-------~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFT-------STKRFIIINGFGGTGSTEIAQLLLHLASEQG-------YEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCCHHHHHHHHHHHh-------CCCCeEEEEECCCCCHHHHHHHHHHHHHhcC-------CeEEEEeCCHHHHHHHHHH
Confidence 3577889999987754 3446688888999999988777776666554 358999998644 444433
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-cc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NI 529 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~ 529 (680)
...-.. ....+...........|-..|.. ....-..-++||||||..+- ...+...+... ..
T Consensus 494 ~g~~A~-------------Ti~~~l~~l~~~~~~~tv~~fl~--~~~~l~~~~vlIVDEAsMl~--~~~~~~Ll~~a~~~ 556 (1960)
T TIGR02760 494 IPRLAS-------------TFITWVKNLFNDDQDHTVQGLLD--KSSPFSNKDIFVVDEANKLS--NNELLKLIDKAEQH 556 (1960)
T ss_pred hcchhh-------------hHHHHHHhhcccccchhHHHhhc--ccCCCCCCCEEEEECCCCCC--HHHHHHHHHHHhhc
Confidence 221000 00000000000000001111110 00011246899999999872 33344444434 46
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 530 RKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 530 ~~rllLTgTP~~n~~~el~sll~ 552 (680)
..+++|-|=+-|....+--+.|.
T Consensus 557 garvVlvGD~~QL~sV~aG~~f~ 579 (1960)
T TIGR02760 557 NSKLILLNDSAQRQGMSAGSAID 579 (1960)
T ss_pred CCEEEEEcChhhcCccccchHHH
Confidence 78899999887765544333333
No 465
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=76.00 E-value=37 Score=37.58 Aligned_cols=116 Identities=21% Similarity=0.259 Sum_probs=64.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
..-.+|.-++|+|||--.=|+.......++. ..|.+.+. .++..++-.-.-
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~--------a~v~y~~s-e~f~~~~v~a~~-------------------- 163 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPN--------ARVVYLTS-EDFTNDFVKALR-------------------- 163 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCC--------ceEEeccH-HHHHHHHHHHHH--------------------
Confidence 5568999999999999887777777666542 22222111 111111111000
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHH---HHHHHhc-ccceEEEEeC--CCCCCC--HHHHH
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKL---YELMTGL-NIRKRILLSG--TPLQND--LQEFF 548 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~---~~~l~~l-~~~~rllLTg--TP~~n~--~~el~ 548 (680)
. -+.+.|++. + ..|++++|-.|.+.+..... .-.+..+ .....+++|+ +|-+-. ..+|.
T Consensus 164 ~-------~~~~~Fk~~---y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~ 230 (408)
T COG0593 164 D-------NEMEKFKEK---Y---SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLR 230 (408)
T ss_pred h-------hhHHHHHHh---h---ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHH
Confidence 0 011222221 1 58899999999987653332 2333333 2334789998 775543 35677
Q ss_pred HHHhhh
Q psy12466 549 YLNDFA 554 (680)
Q Consensus 549 sll~fl 554 (680)
|-+.+-
T Consensus 231 SR~~~G 236 (408)
T COG0593 231 SRLEWG 236 (408)
T ss_pred HHHhce
Confidence 776653
No 466
>KOG0952|consensus
Probab=75.64 E-value=3.1 Score=50.15 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH----HHHHHHHHHHhCCCCeeEeecCCcch
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT----SNWNDEFKKWLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll----~qW~~E~~~~~~~~~v~~~~~~~~~~ 470 (680)
...+.++.+..|.|||+.+-..+.......+ .+++.+|+|. .++ ..|...+.. ++.++.-..+.....
T Consensus 942 td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-----~~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd 1014 (1230)
T KOG0952|consen 942 TDLNFLLGAPTGSGKTVVAELAIFRALSYYP-----GSKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD 1014 (1230)
T ss_pred cchhhhhcCCccCcchhHHHHHHHHHhccCC-----CccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC
Confidence 4456788999999999988655555554443 3579999995 454 567555442 344444443333222
Q ss_pred hhhhhhcCCCCEEEEeHHHHHHHHHhhhcc----CceEEEEcCcccccCc
Q psy12466 471 AEDYVYSRVSPVLIISYEMLIRAYQTIVDT----EFDLLICDEGHRLKNG 516 (680)
Q Consensus 471 ~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~----~~~~vIlDEaH~~kn~ 516 (680)
.......+++|||.+............ .+..+|+||.|.++..
T Consensus 1015 ---~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 ---VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ---hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 233346789999999875544322222 3567999999998665
No 467
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=75.62 E-value=26 Score=37.64 Aligned_cols=46 Identities=20% Similarity=0.081 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.|...++.+.+.+.. ....+..+|.-+.|+|||..+-+++..+...
T Consensus 18 g~~~~~~~l~~~~~~--~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 18 GQEHIVQTLKNAIKN--GRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred CcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 466666666554321 1122345789999999999999988887643
No 468
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=75.38 E-value=8.5 Score=43.84 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=21.6
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
...+|.+|.-.+|+|||..+-+++..
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999998887654
No 469
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=75.32 E-value=17 Score=38.23 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=21.4
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
-.++.-..|.|||.++..++..+...
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45567889999999999998888654
No 470
>KOG0345|consensus
Probab=74.99 E-value=5.3 Score=44.12 Aligned_cols=202 Identities=15% Similarity=0.113 Sum_probs=114.2
Q ss_pred eEEEEECcc----cHHHHHHHHHHHhCCCCeeEEeecCCcchhh-hcccCCCCEEEEehhHHHHHH----HhhhcCCCcE
Q psy12466 194 RVLIVTPSS----LTSNWNDEFKKWLGLTRMCPYHVNQKNKAED-YVYSRVSPVLIISYEMLIRAY----QTIVDTEFDL 264 (680)
Q Consensus 194 ~~LIV~P~s----l~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~itsYe~l~~~~----~~l~~~~~~~ 264 (680)
..|||.|+- =|.+-...|-..++......++|+..-.... -......+|+|.|=+.+.... ..+.-..-.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 569999953 4677888888888877788888874322211 112344679998877664433 3355456889
Q ss_pred EEEcCCCCCCCCC--CCCCccccCCCCCCceeccCCCCCCCCCCchhhhHHHhhhcccCCcccHHHHHHHhhCCCCCCCC
Q psy12466 265 LICDEKSLLKPPS--GNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGLVQQ 342 (680)
Q Consensus 265 vI~DEaH~lKN~~--s~~~~a~~~l~~~~r~~LTG~~~~~~~~~~~e~~~~~~~~~~~~~~ls~~~~l~~~~~~~~~~~~ 342 (680)
+|+|||.||-... .....-+..|..++|-.| |+++..+ ++.+..+--.+.|-.+..
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGL--FSATq~~--------------------~v~dL~raGLRNpv~V~V 218 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLPKQRRTGL--FSATQTQ--------------------EVEDLARAGLRNPVRVSV 218 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhccccccccc--ccchhhH--------------------HHHHHHHhhccCceeeee
Confidence 9999999997653 223344445555555332 2222111 111111111122221100
Q ss_pred CcchhhhccccCCCCCCCccccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHH
Q psy12466 343 PDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422 (680)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~ 422 (680)
. . . ... ..|..+. +. .-.+=+| -|+.+.+.++....
T Consensus 219 ~---~-k-~~~-----------~tPS~L~----------~~--------------Y~v~~a~----eK~~~lv~~L~~~~ 254 (567)
T KOG0345|consen 219 K---E-K-SKS-----------ATPSSLA----------LE--------------YLVCEAD----EKLSQLVHLLNNNK 254 (567)
T ss_pred c---c-c-ccc-----------cCchhhc----------ce--------------eeEecHH----HHHHHHHHHHhccc
Confidence 0 0 0 000 0111110 00 0122233 38888888776522
Q ss_pred hcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcch
Q psy12466 423 RQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNK 470 (680)
Q Consensus 423 ~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~ 470 (680)
.++++|.-|+ ..+.-|..-|.++.+...++.+||.-...
T Consensus 255 ---------~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~ 294 (567)
T KOG0345|consen 255 ---------DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQK 294 (567)
T ss_pred ---------cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcch
Confidence 2458888887 88899999999998999999999876554
No 471
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=74.71 E-value=31 Score=37.28 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=34.3
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
++|.|...-+-+... ...-.+.-++.-..|+||+..|.+++..+.-..
T Consensus 2 ~yPW~~~~~~~l~~~----~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQAL----RARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHh----cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 467777766665542 223344566788999999999999998887654
No 472
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=74.21 E-value=4.4 Score=40.72 Aligned_cols=43 Identities=37% Similarity=0.508 Sum_probs=27.7
Q ss_pred cCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHH
Q psy12466 500 TEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 500 ~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~ 545 (680)
..++.+||||++.+-.. .. ..+..+.....+.+-|=|.|-...
T Consensus 61 ~~~~~liiDE~~~~~~g--~l-~~l~~~~~~~~~~l~GDp~Q~~~~ 103 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPG--YL-LLLLSLSPAKNVILFGDPLQIPYI 103 (234)
T ss_pred CcCCEEEEeccccCChH--HH-HHHHhhccCcceEEEECchhccCC
Confidence 35899999999987321 12 223444444467888999886544
No 473
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=74.17 E-value=7.2 Score=47.49 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=58.7
Q ss_pred CCeEEEEECcccHHH----------HHHHHHHHhCCCCeeEEeecCCc-----------chhhhcccC-----CCCEEEE
Q psy12466 192 ILRVLIVTPSSLTSN----------WNDEFKKWLGLTRMCPYHVNQKN-----------KAEDYVYSR-----VSPVLII 245 (680)
Q Consensus 192 ~~~~LIV~P~sl~~n----------W~~E~~k~~~~~~~~~~~~~~~~-----------~~~~~~~~~-----~~~V~it 245 (680)
..++|||||...|.. =+.-|..-++..++..+..++.. ....+.... .-.|+|+
T Consensus 89 ~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~ 168 (986)
T PRK15483 89 LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLI 168 (986)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEE
Confidence 468999999855432 22333333344556666555422 122233332 3469999
Q ss_pred ehhHHHHHH------Hhh--hc--CC-------CcEEEEcCCCCCCCCCCCCCccccCCCCCCcee
Q psy12466 246 SYEMLIRAY------QTI--VD--TE-------FDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKS 294 (680)
Q Consensus 246 sYe~l~~~~------~~l--~~--~~-------~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~ 294 (680)
|-.++.... +.+ .. .+ --+||+||.|++.. ..+..+++..++..+.+.
T Consensus 169 niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lr 233 (986)
T PRK15483 169 NAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIR 233 (986)
T ss_pred ehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-chHHHHHHHhcCcccEEE
Confidence 999885421 111 11 12 23689999999965 234667888888877443
No 474
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=74.12 E-value=19 Score=36.53 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCccceEEEEe--ccchHHHHHH
Q psy12466 407 GLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT--PSSLTSNWND 449 (680)
Q Consensus 407 GlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~--P~sll~qW~~ 449 (680)
|.|||..++.++..+...+. +++||= |..-+..|.+
T Consensus 12 GvGKTT~a~nLA~~la~~G~-------~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 12 GAGKTTALMGLCAALASDGK-------RVALFEADENRPLTRWKE 49 (231)
T ss_pred CccHHHHHHHHHHHHHhCCC-------cEEEEeCCCCCCHHHHHH
Confidence 78999999999999888763 355553 3455677865
No 475
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=73.77 E-value=40 Score=36.07 Aligned_cols=51 Identities=16% Similarity=-0.032 Sum_probs=36.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.++|.|...-+.+.+.+.. ..-.+.-++.-..|+||+..|.+++..+.-..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~--~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDA--GRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHc--CCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 3677787777766654311 22344567789999999999999998887654
No 476
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=73.75 E-value=6.5 Score=43.99 Aligned_cols=27 Identities=33% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
....|.+|.-++|+|||..+=+++..+
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999988887653
No 477
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=73.70 E-value=24 Score=40.82 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.4
Q ss_pred CCCCceEEEcCCCCChHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALI 418 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali 418 (680)
.-..|.+|+-++|+|||+.|-|.+
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvA 204 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVA 204 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHh
Confidence 346899999999999999887766
No 478
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.30 E-value=47 Score=39.01 Aligned_cols=45 Identities=16% Similarity=0.075 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
-|...+..+.+.+.. ..-.+.-|+.-+.|.|||..+..++..+.-
T Consensus 21 Gq~~~~~~L~~~i~~--~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 21 GQEALTTTLKNAIAT--NKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred CcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 355555555443211 112334678899999999988888877653
No 479
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.23 E-value=32 Score=37.43 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.|...+..+.+.+.. ..-....++.-+.|.|||..+-+++..+..
T Consensus 21 g~~~~~~~l~~~i~~--~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 21 GQSHITNTLLNAIEN--NHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 566666666554321 122346778999999999999888766654
No 480
>KOG0335|consensus
Probab=72.96 E-value=5.6 Score=44.39 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhCCCCee--EEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLGLTRMC--PYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI 266 (680)
..++||++|+. |..|=-+|-+|+.....+. +.+++..-........+.++|++++-+.+....+ .+.--...++|
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~v 231 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLV 231 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEE
Confidence 45789999965 6789999999998654444 3333322222333344668999999999876544 22223344899
Q ss_pred EcCCCCCCCCCCCCCccccCCCCCCceeccCCCC
Q psy12466 267 CDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGS 300 (680)
Q Consensus 267 ~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~~ 300 (680)
+|||.|+-.. ..+...-|+++.-...
T Consensus 232 LDEADrMlD~--------mgF~p~Ir~iv~~~~~ 257 (482)
T KOG0335|consen 232 LDEADRMLDE--------MGFEPQIRKIVEQLGM 257 (482)
T ss_pred ecchHHhhhh--------ccccccHHHHhcccCC
Confidence 9999998653 3445555666655443
No 481
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=72.11 E-value=29 Score=33.58 Aligned_cols=60 Identities=25% Similarity=0.307 Sum_probs=39.1
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCC-C--CCccceEEEEeccchHHHHHHHHHHHhC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPY-G--MPVIRKVLIVTPSSLTSNWNDEFKKWLG 456 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~-~--~~~~~~~LIV~P~sll~qW~~E~~~~~~ 456 (680)
+.-++++-..|.|||..++.++..+....+. + .+...++|+|....-..+..+.+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQ 94 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhc
Confidence 3458899999999999999999888753221 0 1123578999887777777777776653
No 482
>PRK08760 replicative DNA helicase; Provisional
Probab=72.04 E-value=46 Score=37.74 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=64.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhh---
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE--- 472 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~--- 472 (680)
++.=.+||..+|+|||..++.++........ .+++++....-..++...+..........-+....-....
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g------~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~ 301 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSK------KGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWAR 301 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcC------CceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHH
Confidence 3444789999999999999999987654321 2489998887778888776554333221111110000000
Q ss_pred ---hhhhcCCCCEEEE-----eHHHHHHHHHhhh-ccCceEEEEcCccccc
Q psy12466 473 ---DYVYSRVSPVLII-----SYEMLIRAYQTIV-DTEFDLLICDEGHRLK 514 (680)
Q Consensus 473 ---~~~~~~~~~vvI~-----ty~~l~~~~~~l~-~~~~~~vIlDEaH~~k 514 (680)
........+++|. +-+.++.....+. ....++||||=-|.++
T Consensus 302 ~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcC
Confidence 0011122345544 2344444444332 3468999999888775
No 483
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=71.59 E-value=3.6 Score=49.89 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=27.7
Q ss_pred CCEEEEehhHHHHHHHhhh-cCCCcEEEEcCCCCCCCC
Q psy12466 240 SPVLIISYEMLIRAYQTIV-DTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 240 ~~V~itsYe~l~~~~~~l~-~~~~~~vI~DEaH~lKN~ 276 (680)
.+|+|||..++..+...-. -..++.+|+||||+|-+.
T Consensus 414 AdivItNHall~~~~~~~~~~p~~~~lIiDEAH~l~~~ 451 (820)
T PRK07246 414 ARLLITNHAYFLTRVQDDKDFARNKVLVFDEAQKLMLQ 451 (820)
T ss_pred CCEEEEchHHHHHHHhhccCCCCCCEEEEECcchhHHH
Confidence 5699999998876543211 145899999999999754
No 484
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=71.41 E-value=20 Score=36.47 Aligned_cols=40 Identities=28% Similarity=0.582 Sum_probs=29.2
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCccceEEEE-e-ccchHHHHHHHHHH
Q psy12466 407 GLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV-T-PSSLTSNWNDEFKK 453 (680)
Q Consensus 407 GlGKT~~aiali~~~~~~~~~~~~~~~~~LIV-~-P~sll~qW~~E~~~ 453 (680)
|.|||..+++++..+..+|. ++.+| | |+.-+..|.+...+
T Consensus 12 GaGKTT~~~~LAs~la~~G~-------~V~lIDaDpn~pl~~W~~~a~~ 53 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGA-------RVALIDADPNQPLAKWAENAQR 53 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCC-------eEEEEeCCCCCcHHHHHHhccc
Confidence 78999999999999988774 34444 3 35667799665443
No 485
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=71.34 E-value=8.9 Score=46.01 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=21.2
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
..+.|.+|.-+.|+|||..+-+++..+
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh
Confidence 345788999999999998877766543
No 486
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=71.14 E-value=3.9 Score=50.31 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=29.3
Q ss_pred CCCCEEEEehhHHHHHHHhhhc--CCCcEEEEcCCCCCCCCC
Q psy12466 238 RVSPVLIISYEMLIRAYQTIVD--TEFDLLICDEKSLLKPPS 277 (680)
Q Consensus 238 ~~~~V~itsYe~l~~~~~~l~~--~~~~~vI~DEaH~lKN~~ 277 (680)
...+|+|||...+..+...-.. ..++++|+||||+|-...
T Consensus 430 ~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d~A 471 (928)
T PRK08074 430 KFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEEAA 471 (928)
T ss_pred hcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHHHH
Confidence 4467999999999776522111 347999999999997544
No 487
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=71.03 E-value=57 Score=30.92 Aligned_cols=31 Identities=32% Similarity=0.296 Sum_probs=21.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..+...+|.-+.|.|||...-+++..+...+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4456788899999999999998888887774
No 488
>KOG0731|consensus
Probab=70.88 E-value=30 Score=41.09 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALI 418 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali 418 (680)
.-.+|+||.-.+|+|||+.|-|.+
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHh
Confidence 456899999999999999888776
No 489
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=70.68 E-value=19 Score=42.66 Aligned_cols=69 Identities=28% Similarity=0.327 Sum_probs=49.6
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
|.+-|+++|.+ ..+.+++...+|+|||.+.++-+.++...... ...++|+|+-+ .....-.+.+.
T Consensus 3 Ln~~Q~~av~~-----------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v---~p~~IL~lTFT~kAA~em~~Rl~ 68 (672)
T PRK10919 3 LNPGQQQAVEF-----------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---QARHIAAVTFTNKAAREMKERVA 68 (672)
T ss_pred CCHHHHHHHhC-----------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---CHHHeeeEechHHHHHHHHHHHH
Confidence 67889999843 23567777889999999999988888764221 12468999996 55566666777
Q ss_pred HHhC
Q psy12466 453 KWLG 456 (680)
Q Consensus 453 ~~~~ 456 (680)
+.++
T Consensus 69 ~~l~ 72 (672)
T PRK10919 69 QTLG 72 (672)
T ss_pred HHhC
Confidence 6655
No 490
>KOG1133|consensus
Probab=69.57 E-value=4 Score=47.08 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=34.4
Q ss_pred CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccC
Q psy12466 457 LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 457 ~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn 515 (680)
..+.+.|.++... ...+++|+-.|+.+...-.. -...+=.+|||||||++-+
T Consensus 308 ~~~~CPYY~SR~a-------vp~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 308 ELRGCPYYASRRA-------VPQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred hcCCCCchhhhhc-------cccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHH
Confidence 3455666655432 24678999999998654322 1234556899999999855
No 491
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=69.44 E-value=60 Score=40.32 Aligned_cols=251 Identities=16% Similarity=0.200 Sum_probs=140.1
Q ss_pred CeEEEEECcccHH-HHHHHHHHHhCCCCeeEEeecCCcchh------hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEE
Q psy12466 193 LRVLIVTPSSLTS-NWNDEFKKWLGLTRMCPYHVNQKNKAE------DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~sl~~-nW~~E~~k~~~~~~~~~~~~~~~~~~~------~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~v 265 (680)
+.|-|+||++++. |=-+-|..-|-+..+.+-..+.-.+.. .....+.-+|+|=|.-.+..+... .+-++|
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~F---kdLGLl 720 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKF---KDLGLL 720 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEE---ecCCeE
Confidence 6889999999985 344445544544566665555422222 133456678998887776433321 337899
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCCCceeccCCCCCCCCCCchhhhHHHhhhcccCCcccHHHHHHHhhCCCCCCCCCcc
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGLVQQPDV 345 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~~~~~~~~~~e~~~~~~~~~~~~~~ls~~~~l~~~~~~~~~~~~~~~ 345 (680)
|+||=||..=. .=..++.|++.- =+|| ++++|.-|=|-=+.... ..|. ++..|+.
T Consensus 721 IIDEEqRFGVk---~KEkLK~Lr~~V-DvLT-LSATPIPRTL~Msm~Gi-------------RdlS-------vI~TPP~ 775 (1139)
T COG1197 721 IIDEEQRFGVK---HKEKLKELRANV-DVLT-LSATPIPRTLNMSLSGI-------------RDLS-------VIATPPE 775 (1139)
T ss_pred EEechhhcCcc---HHHHHHHHhccC-cEEE-eeCCCCcchHHHHHhcc-------------hhhh-------hccCCCC
Confidence 99999987422 223344554442 1344 22444444332211111 1111 2222221
Q ss_pred hhhhccccCCCCCCCccccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 346 MEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.. .| +.+-+.||--.-|+ =|++..+.+.|
T Consensus 776 ~R-----------~p---------V~T~V~~~d~~~ir-------------------------------eAI~REl~RgG 804 (1139)
T COG1197 776 DR-----------LP---------VKTFVSEYDDLLIR-------------------------------EAILRELLRGG 804 (1139)
T ss_pred CC-----------cc---------eEEEEecCChHHHH-------------------------------HHHHHHHhcCC
Confidence 10 01 22334444433332 23333343333
Q ss_pred CCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchh----hhhhhcCCCCEEEEeHHHHHHHHHh-hhc
Q psy12466 426 PYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKA----EDYVYSRVSPVLIISYEMLIRAYQT-IVD 499 (680)
Q Consensus 426 ~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~~~~-l~~ 499 (680)
.+-.|+|. .-+.+=.+++++..|..++.+-||.=..+. ......+.+||+++|-= ++. +.-
T Consensus 805 --------QvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTI-----IEtGIDI 871 (1139)
T COG1197 805 --------QVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTI-----IETGIDI 871 (1139)
T ss_pred --------EEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeee-----eecCcCC
Confidence 37888886 788999999999999999999998765543 23345678999998831 111 222
Q ss_pred cCceEEEEcCcccccCcccHHHHHHHhc-ccc---eEEEEeC
Q psy12466 500 TEFDLLICDEGHRLKNGKSKLYELMTGL-NIR---KRILLSG 537 (680)
Q Consensus 500 ~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~~---~rllLTg 537 (680)
-+-.-+|++-|+++ .-+++++.--+. +++ +-++|+-
T Consensus 872 PnANTiIIe~AD~f--GLsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 872 PNANTIIIERADKF--GLAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred CCCceEEEeccccc--cHHHHHHhccccCCccceEEEEEeec
Confidence 34678999999998 456666655444 333 3355543
No 492
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=69.29 E-value=57 Score=38.44 Aligned_cols=144 Identities=8% Similarity=0.110 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH---
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK--- 452 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~--- 452 (680)
+=.+-|..+.+.+ +..--++.-+=|-|||..+..++..+..... .+++|.+|. +....-.++++
T Consensus 173 ~~~~~id~~~~~f------kq~~tV~taPRqrGKS~iVgi~l~~La~f~G------i~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 173 RTLREIDRIFDEY------GKCYTAATVPRRCGKTTIMAIILAAMISFLE------IDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred hhHHHHHHHHHHH------hhcceEEEeccCCCcHHHHHHHHHHHHHhcC------CeEEEECCChhhHHHHHHHHHHHH
Confidence 3344455555542 2233455566899999987766555544221 258999995 33333333333
Q ss_pred ------HHhCCCC-eeEeecCCcchhhhhh----hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHH
Q psy12466 453 ------KWLGLTR-MCPYHVNQKNKAEDYV----YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLY 521 (680)
Q Consensus 453 ------~~~~~~~-v~~~~~~~~~~~~~~~----~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~ 521 (680)
.|+|... +....+.. ....-.. ..+...+.... +..+..+...+|++|+|||+.+.. ....
T Consensus 241 e~lg~~~~fp~~~~iv~vkgg~-E~I~f~~p~gak~G~sti~F~A-----rs~~s~RG~~~DLLIVDEAAfI~~--~~l~ 312 (752)
T PHA03333 241 HAYQHKPWFPEEFKIVTLKGTD-ENLEYISDPAAKEGKTTAHFLA-----SSPNAARGQNPDLVIVDEAAFVNP--GALL 312 (752)
T ss_pred HHhccccccCCCceEEEeeCCe-eEEEEecCcccccCcceeEEec-----ccCCCcCCCCCCEEEEECcccCCH--HHHH
Confidence 3444432 12122111 0000000 00001122211 112334556789999999999954 2222
Q ss_pred HHHHhcc-cceEEEEeCCCC
Q psy12466 522 ELMTGLN-IRKRILLSGTPL 540 (680)
Q Consensus 522 ~~l~~l~-~~~rllLTgTP~ 540 (680)
..+--+. ...++.+..+|.
T Consensus 313 aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 313 SVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHccCCCceEEEeCCC
Confidence 2222222 345566656664
No 493
>CHL00195 ycf46 Ycf46; Provisional
Probab=69.26 E-value=8 Score=43.91 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=21.5
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
...+|.+|.-.+|+|||..|=+++..
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 34678999999999999998777654
No 494
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.24 E-value=53 Score=36.61 Aligned_cols=133 Identities=16% Similarity=0.121 Sum_probs=68.7
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHh-cCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLR-QGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~-~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
+.-..|.-..|.|||.+...++..+.. .++. +-.+|.+...-+ ...+.+..|.....+.......
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~-----~v~~i~~d~~ri-galEQL~~~a~ilGvp~~~v~~-------- 256 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGAD-----KVALLTTDSYRI-GGHEQLRIYGKLLGVSVRSIKD-------- 256 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-----eEEEEecCCcch-hHHHHHHHHHHHcCCceecCCC--------
Confidence 344566789999999887666654322 2211 113444444333 3333344443222222211111
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-----ccceEEEEeCCCCCCCHHHHHHH
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-----NIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-----~~~~rllLTgTP~~n~~~el~sl 550 (680)
-..+......+ ..++++++|.+=+..+. ......+..+ .....++|++|--.+.+.++...
T Consensus 257 -----------~~dl~~al~~l--~~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~ 322 (420)
T PRK14721 257 -----------IADLQLMLHEL--RGKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISA 322 (420)
T ss_pred -----------HHHHHHHHHHh--cCCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 11111222222 35789999997443322 2233333333 23455899999888888888777
Q ss_pred HhhhCCC
Q psy12466 551 NDFANPG 557 (680)
Q Consensus 551 l~fl~p~ 557 (680)
+..+...
T Consensus 323 f~~~~~~ 329 (420)
T PRK14721 323 YQGHGIH 329 (420)
T ss_pred hcCCCCC
Confidence 7666544
No 495
>PRK06620 hypothetical protein; Validated
Probab=68.74 E-value=30 Score=34.65 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=28.0
Q ss_pred ceEEEEcCcccccCcccHHHHHHHhc-ccceEEEEeCCCCCCC--HHHHHHHHh
Q psy12466 502 FDLLICDEGHRLKNGKSKLYELMTGL-NIRKRILLSGTPLQND--LQEFFYLND 552 (680)
Q Consensus 502 ~~~vIlDEaH~~kn~~s~~~~~l~~l-~~~~rllLTgTP~~n~--~~el~sll~ 552 (680)
.+++++||+|.+. .......+..+ .....+++|||--... +.+|.|-+.
T Consensus 86 ~d~lliDdi~~~~--~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~ 137 (214)
T PRK06620 86 YNAFIIEDIENWQ--EPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIK 137 (214)
T ss_pred CCEEEEeccccch--HHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHh
Confidence 4789999999652 12233333333 4456789999843332 345555444
No 496
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=68.69 E-value=15 Score=38.80 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.8
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
..+.+|.-+.|+|||..+.+++..+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999988877654
No 497
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=68.67 E-value=8.8 Score=45.47 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=47.6
Q ss_pred eEEEEECcccHH----HHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHH-----HHH----HHhhhcC
Q psy12466 194 RVLIVTPSSLTS----NWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRA----YQTIVDT 260 (680)
Q Consensus 194 ~~LIV~P~sl~~----nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l-----~~~----~~~l~~~ 260 (680)
.++||+|+..+. .|-..+-++++ .++....++.... ........+|++.|-..+ +.. ...+...
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~LG-Lsv~~i~g~~~~~--~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r 175 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFLG-LSVGLILSGMSPE--ERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQR 175 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCC-CeEEEEeCCCCHH--HHHHhcCCCEEEECCCchhhHHHhcccccchhhhhcc
Confidence 589999988764 46666666665 5555554443322 212222368888766544 222 1123446
Q ss_pred CCcEEEEcCCCCCCC
Q psy12466 261 EFDLLICDEKSLLKP 275 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN 275 (680)
+++++|+||+|++-=
T Consensus 176 ~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 176 PFHFAIIDEVDSILI 190 (745)
T ss_pred ccceeEeecHHHHhH
Confidence 689999999998753
No 498
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=68.39 E-value=15 Score=35.59 Aligned_cols=136 Identities=21% Similarity=0.156 Sum_probs=56.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH-HHHH--HHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW-NDEF--KKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW-~~E~--~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
..+.--.|=|||..|+.++......+. +++||= .+...| ..|. .+.++... +..............
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~-------rV~ivQ--FlKg~~~~GE~~~l~~l~~~~--~~~~g~~f~~~~~~~ 74 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGM-------RVLIVQ--FLKGGRYSGELKALKKLPNVE--IERFGKGFVWRMNEE 74 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT---------EEEEE--SS--SS--HHHHHHGGGT--E--EEE--TT----GGGH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCC-------EEEEEE--EecCCCCcCHHHHHHhCCeEE--EEEcCCcccccCCCc
Confidence 344556889999999998877666653 355542 222323 2232 22333322 111111000000000
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc----ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHH
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG----KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~----~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~s 549 (680)
. .+ .-...+.+......+....||+||+||.-..-+. .......+..-....-++|||--.+..+.|+..
T Consensus 75 ~--~~-~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 75 E--ED-RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp H--HH-HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred H--HH-HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 0 00 0000111222233455678999999998654332 233334444434556699999876554444433
No 499
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=68.00 E-value=31 Score=39.32 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=27.9
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
|..-+..|.+.+. ...-.++-++.-.=|+|||..|=-++..+--..
T Consensus 21 Qe~v~~~L~nal~--~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 21 QEHVVKTLSNALE--NGRIAHAYLFSGPRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred cHHHHHHHHHHHH--hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC
Confidence 4444444444321 122344566777889999998877777765543
No 500
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=67.97 E-value=1e+02 Score=30.96 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=30.2
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
+.-.+|+-.+|.|||..++.++........ .+++++....
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g------~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQG------KPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CceEEEeCCC
Confidence 344688999999999999999887776521 2488888643
Done!