Query psy12466
Match_columns 680
No_of_seqs 487 out of 3638
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 20:03:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 1.7E-49 5.6E-54 460.3 24.4 309 363-671 45-368 (644)
2 3mwy_W Chromo domain-containin 100.0 4.2E-44 1.4E-48 424.8 26.0 280 369-672 232-529 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 1.9E-42 6.7E-47 389.7 28.3 278 367-672 31-317 (500)
4 3dmq_A RNA polymerase-associat 99.9 4E-28 1.4E-32 292.4 12.2 255 371-639 151-451 (968)
5 1wp9_A ATP-dependent RNA helic 99.8 5.1E-20 1.7E-24 203.5 20.4 169 372-558 8-184 (494)
6 2fwr_A DNA repair protein RAD2 99.8 1E-18 3.6E-23 194.7 16.8 194 371-644 91-287 (472)
7 1rif_A DAR protein, DNA helica 99.8 8.8E-19 3E-23 182.2 13.8 163 372-556 112-278 (282)
8 2oca_A DAR protein, ATP-depend 99.7 6E-17 2.1E-21 182.2 14.1 166 371-558 111-280 (510)
9 2fz4_A DNA repair protein RAD2 99.7 1.2E-16 4.2E-21 161.9 14.9 142 371-544 91-233 (237)
10 3tbk_A RIG-I helicase domain; 99.7 1.7E-16 5.7E-21 179.4 16.0 160 373-544 4-179 (555)
11 4a2p_A RIG-I, retinoic acid in 99.7 2.9E-16 9.9E-21 177.7 15.9 161 372-544 6-181 (556)
12 1z3i_X Similar to RAD54-like; 99.7 1.6E-17 5.5E-22 192.2 5.6 109 191-299 113-230 (644)
13 3h1t_A Type I site-specific re 99.7 7.6E-17 2.6E-21 184.9 10.3 167 371-551 176-353 (590)
14 4a2q_A RIG-I, retinoic acid in 99.7 4.4E-16 1.5E-20 184.7 16.9 164 371-546 246-424 (797)
15 2ykg_A Probable ATP-dependent 99.7 6.4E-16 2.2E-20 180.4 17.3 172 372-555 12-206 (696)
16 3mwy_W Chromo domain-containin 99.7 4.8E-17 1.6E-21 192.8 7.8 109 191-299 285-405 (800)
17 4a2w_A RIG-I, retinoic acid in 99.7 1.5E-15 5E-20 182.8 20.0 170 371-552 246-430 (936)
18 1z63_A Helicase of the SNF2/RA 99.6 1.4E-16 4.8E-21 178.8 7.3 103 191-299 85-187 (500)
19 4gl2_A Interferon-induced heli 99.6 6.7E-16 2.3E-20 180.3 10.8 175 372-556 6-215 (699)
20 2gxq_A Heat resistant RNA depe 99.6 6.7E-15 2.3E-19 144.9 16.2 164 373-547 23-192 (207)
21 3b6e_A Interferon-induced heli 99.6 3.7E-15 1.3E-19 147.3 13.0 135 371-515 31-176 (216)
22 2pl3_A Probable ATP-dependent 99.6 3.8E-14 1.3E-18 142.8 16.0 165 372-547 46-219 (236)
23 1t6n_A Probable ATP-dependent 99.6 3.5E-14 1.2E-18 141.4 15.6 161 373-547 36-207 (220)
24 1q0u_A Bstdead; DEAD protein, 99.5 5.7E-14 2E-18 139.9 15.8 161 373-547 26-198 (219)
25 1vec_A ATP-dependent RNA helic 99.5 8.2E-14 2.8E-18 137.0 16.1 155 373-540 25-188 (206)
26 1hv8_A Putative ATP-dependent 99.5 7E-14 2.4E-18 149.1 16.2 156 373-542 28-191 (367)
27 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 6.9E-14 2.4E-18 168.0 16.8 161 372-542 270-441 (1038)
28 3ber_A Probable ATP-dependent 99.5 1.4E-13 4.9E-18 140.2 16.0 161 373-547 65-234 (249)
29 1qde_A EIF4A, translation init 99.5 1.4E-13 4.9E-18 137.3 14.7 154 372-540 35-197 (224)
30 1wrb_A DJVLGB; RNA helicase, D 99.5 2.3E-13 7.8E-18 138.7 16.5 166 372-547 44-226 (253)
31 1xti_A Probable ATP-dependent 99.5 1.6E-13 5.6E-18 148.0 15.6 157 373-542 30-197 (391)
32 2oxc_A Probable ATP-dependent 99.5 3.1E-13 1.1E-17 135.8 16.2 152 373-539 46-208 (230)
33 1s2m_A Putative ATP-dependent 99.5 4.7E-13 1.6E-17 145.1 16.7 155 373-540 43-205 (400)
34 1fuu_A Yeast initiation factor 99.5 2.6E-13 8.9E-18 146.4 14.3 156 372-541 42-205 (394)
35 3bor_A Human initiation factor 99.5 4E-13 1.4E-17 135.7 14.1 156 372-540 51-215 (237)
36 2j0s_A ATP-dependent RNA helic 99.5 4.8E-13 1.6E-17 145.6 14.9 156 372-540 58-221 (410)
37 2z0m_A 337AA long hypothetical 99.4 6.7E-13 2.3E-17 139.9 14.6 149 373-541 16-172 (337)
38 3eiq_A Eukaryotic initiation f 99.4 6.1E-13 2.1E-17 144.6 14.1 156 372-540 61-225 (414)
39 3oiy_A Reverse gyrase helicase 99.4 7E-13 2.4E-17 144.8 13.2 157 373-545 21-209 (414)
40 3iuy_A Probable ATP-dependent 99.4 2.2E-12 7.5E-17 129.1 15.6 159 372-539 41-208 (228)
41 3pey_A ATP-dependent RNA helic 99.4 1.7E-12 5.7E-17 139.8 14.9 154 372-540 26-188 (395)
42 3ly5_A ATP-dependent RNA helic 99.4 2.3E-12 7.9E-17 132.3 15.2 165 372-547 75-249 (262)
43 3dkp_A Probable ATP-dependent 99.4 3.4E-12 1.2E-16 129.2 15.5 155 373-539 51-220 (245)
44 3fe2_A Probable ATP-dependent 99.4 8.1E-12 2.8E-16 126.4 16.8 166 372-547 50-224 (242)
45 2eyq_A TRCF, transcription-rep 99.3 8.1E-12 2.8E-16 152.7 16.7 160 371-546 601-768 (1151)
46 2db3_A ATP-dependent RNA helic 99.3 1.7E-11 5.8E-16 135.1 16.9 160 372-540 77-247 (434)
47 3fht_A ATP-dependent RNA helic 99.3 8.6E-12 2.9E-16 135.3 14.2 156 372-541 46-212 (412)
48 2i4i_A ATP-dependent RNA helic 99.3 1.9E-11 6.4E-16 133.1 15.9 160 372-540 36-221 (417)
49 3fho_A ATP-dependent RNA helic 99.3 9.9E-12 3.4E-16 139.8 13.6 155 373-540 141-302 (508)
50 1gm5_A RECG; helicase, replica 99.3 6.4E-12 2.2E-16 147.2 12.5 157 373-545 368-532 (780)
51 3dmq_A RNA polymerase-associat 99.3 2.1E-12 7.2E-17 155.6 7.6 109 190-299 198-316 (968)
52 2xgj_A ATP-dependent RNA helic 99.3 6.1E-11 2.1E-15 143.0 19.7 154 371-551 84-243 (1010)
53 3sqw_A ATP-dependent RNA helic 99.3 5.1E-11 1.7E-15 136.1 16.4 162 373-541 43-225 (579)
54 3i5x_A ATP-dependent RNA helic 99.2 3E-11 1E-15 137.3 13.4 163 372-541 93-276 (563)
55 1oyw_A RECQ helicase, ATP-depe 99.2 7E-11 2.4E-15 133.3 12.7 161 373-554 25-199 (523)
56 3fmp_B ATP-dependent RNA helic 99.2 7.7E-11 2.6E-15 131.3 12.3 156 372-541 113-279 (479)
57 3l9o_A ATP-dependent RNA helic 99.2 3.6E-10 1.2E-14 137.5 19.0 155 371-552 182-342 (1108)
58 2p6r_A Afuhel308 helicase; pro 99.2 2.2E-10 7.5E-15 133.9 16.4 158 373-551 25-192 (702)
59 2v1x_A ATP-dependent DNA helic 99.2 1.3E-10 4.6E-15 132.7 14.2 160 372-552 43-223 (591)
60 2va8_A SSO2462, SKI2-type heli 99.1 3.2E-10 1.1E-14 132.7 16.6 159 373-551 30-195 (715)
61 2zj8_A DNA helicase, putative 99.1 2.3E-10 8E-15 134.0 15.3 159 373-551 23-189 (720)
62 4a4z_A Antiviral helicase SKI2 99.1 3.3E-10 1.1E-14 136.6 16.7 157 371-552 37-199 (997)
63 3fmo_B ATP-dependent RNA helic 99.1 4.4E-10 1.5E-14 117.6 14.1 155 372-541 113-279 (300)
64 4ddu_A Reverse gyrase; topoiso 99.0 1.1E-09 3.7E-14 133.3 14.8 158 373-546 78-267 (1104)
65 1wp9_A ATP-dependent RNA helic 98.8 2E-09 6.9E-14 118.2 4.8 108 192-300 52-167 (494)
66 1z5z_A Helicase of the SNF2/RA 98.8 5.8E-09 2E-13 107.5 6.6 69 604-672 13-88 (271)
67 1gku_B Reverse gyrase, TOP-RG; 98.8 2.3E-08 8E-13 121.4 12.2 150 374-542 58-228 (1054)
68 3llm_A ATP-dependent RNA helic 98.7 1.4E-07 4.8E-12 94.7 14.8 155 373-542 61-221 (235)
69 2v6i_A RNA helicase; membrane, 98.6 1.8E-07 6.2E-12 102.7 12.1 129 397-542 2-137 (431)
70 1rif_A DAR protein, DNA helica 98.6 2.4E-08 8.2E-13 103.1 3.8 100 194-299 159-262 (282)
71 2fwr_A DNA repair protein RAD2 98.5 5.3E-08 1.8E-12 107.9 6.2 94 193-300 134-229 (472)
72 2fz4_A DNA repair protein RAD2 98.5 8.9E-08 3E-12 96.5 6.9 94 192-299 133-228 (237)
73 4f92_B U5 small nuclear ribonu 98.5 6.7E-07 2.3E-11 113.0 16.0 160 374-552 927-1104(1724)
74 3tbk_A RIG-I helicase domain; 98.5 8.6E-08 2.9E-12 107.7 6.1 118 192-309 52-184 (555)
75 3crv_A XPD/RAD3 related DNA he 98.5 3.7E-07 1.3E-11 103.4 11.0 128 373-515 3-187 (551)
76 4a2p_A RIG-I, retinoic acid in 98.5 8.5E-08 2.9E-12 108.0 5.1 116 192-309 55-186 (556)
77 2vl7_A XPD; helicase, unknown 98.4 6.7E-07 2.3E-11 101.1 11.6 125 373-514 7-188 (540)
78 4f92_B U5 small nuclear ribonu 98.4 2.4E-06 8.3E-11 107.9 17.6 167 372-551 78-264 (1724)
79 2jlq_A Serine protease subunit 98.4 1E-06 3.4E-11 97.4 12.0 128 398-542 20-154 (451)
80 2ykg_A Probable ATP-dependent 98.4 2.4E-07 8.1E-12 107.8 6.7 111 193-303 62-187 (696)
81 3b6e_A Interferon-induced heli 98.4 3.9E-07 1.3E-11 89.2 7.1 84 192-275 82-176 (216)
82 2gxq_A Heat resistant RNA depe 98.4 5.6E-07 1.9E-11 87.8 7.5 85 192-276 72-159 (207)
83 4a2q_A RIG-I, retinoic acid in 98.3 3.1E-07 1.1E-11 108.7 5.9 115 192-307 296-425 (797)
84 2z83_A Helicase/nucleoside tri 98.3 1.9E-06 6.4E-11 95.4 11.5 131 395-542 19-156 (459)
85 3o8b_A HCV NS3 protease/helica 98.3 9.6E-07 3.3E-11 101.1 9.3 127 396-541 231-362 (666)
86 4gl2_A Interferon-induced heli 98.3 5.4E-07 1.9E-11 104.8 7.1 84 193-276 57-151 (699)
87 4a2w_A RIG-I, retinoic acid in 98.3 3.2E-07 1.1E-11 110.3 4.6 116 192-308 296-426 (936)
88 2oca_A DAR protein, ATP-depend 98.3 2.5E-07 8.4E-12 103.6 3.0 100 194-299 159-262 (510)
89 3h1t_A Type I site-specific re 98.2 4.3E-07 1.5E-11 103.7 3.6 99 191-299 234-341 (590)
90 1yks_A Genome polyprotein [con 98.2 3.7E-06 1.3E-10 92.5 10.6 130 396-542 7-143 (440)
91 2whx_A Serine protease/ntpase/ 98.2 6.5E-06 2.2E-10 94.3 12.4 130 396-542 185-321 (618)
92 2wv9_A Flavivirin protease NS2 98.2 4.2E-06 1.4E-10 96.7 10.1 131 396-542 240-376 (673)
93 1hv8_A Putative ATP-dependent 98.1 1.8E-06 6.3E-11 91.3 6.2 108 192-299 74-188 (367)
94 2oxc_A Probable ATP-dependent 98.1 1.5E-06 5.2E-11 86.6 5.1 106 192-298 92-207 (230)
95 1vec_A ATP-dependent RNA helic 98.1 5.7E-06 2E-10 80.5 8.6 85 192-276 71-161 (206)
96 3hgt_A HDA1 complex subunit 3; 98.1 3.9E-06 1.3E-10 87.5 7.3 57 616-672 20-89 (328)
97 2pl3_A Probable ATP-dependent 98.1 1.8E-06 6E-11 86.4 4.6 106 192-298 97-211 (236)
98 1q0u_A Bstdead; DEAD protein, 98.1 4.7E-06 1.6E-10 82.3 7.4 107 192-298 72-190 (219)
99 1xti_A Probable ATP-dependent 98.1 4.8E-06 1.6E-10 89.2 7.5 85 192-276 76-167 (391)
100 3ber_A Probable ATP-dependent 98.1 5.5E-06 1.9E-10 83.8 7.5 107 192-298 111-226 (249)
101 1t6n_A Probable ATP-dependent 98.0 5.1E-06 1.8E-10 81.9 6.9 83 193-275 83-172 (220)
102 1fuu_A Yeast initiation factor 98.0 2.8E-06 9.4E-11 91.1 5.2 106 192-298 89-202 (394)
103 1qde_A EIF4A, translation init 98.0 8E-06 2.7E-10 80.7 8.2 84 192-276 82-170 (224)
104 3bor_A Human initiation factor 98.0 4.9E-06 1.7E-10 83.4 5.8 107 192-298 98-213 (237)
105 1s2m_A Putative ATP-dependent 97.9 1.5E-05 5.1E-10 85.7 8.2 85 192-276 89-178 (400)
106 3eiq_A Eukaryotic initiation f 97.9 8E-06 2.7E-10 88.1 5.7 107 192-298 108-223 (414)
107 2j0s_A ATP-dependent RNA helic 97.9 9.7E-06 3.3E-10 87.6 6.4 107 192-298 105-219 (410)
108 4a15_A XPD helicase, ATP-depen 97.9 3.6E-05 1.2E-09 88.2 11.1 71 373-455 3-75 (620)
109 2xau_A PRE-mRNA-splicing facto 97.9 9.9E-05 3.4E-09 86.7 14.6 149 376-539 96-250 (773)
110 1wrb_A DJVLGB; RNA helicase, D 97.8 2.2E-05 7.5E-10 79.2 7.0 84 193-276 101-189 (253)
111 2ipc_A Preprotein translocase 97.7 0.00026 8.9E-09 82.3 14.2 143 374-550 80-238 (997)
112 2z0m_A 337AA long hypothetical 97.7 3.4E-05 1.2E-09 80.4 6.1 83 193-276 57-144 (337)
113 3pey_A ATP-dependent RNA helic 97.7 7.1E-05 2.4E-09 79.8 8.3 82 192-275 75-159 (395)
114 3iuy_A Probable ATP-dependent 97.6 6E-05 2.1E-09 74.6 5.8 85 192-276 94-182 (228)
115 3dkp_A Probable ATP-dependent 97.6 0.0001 3.5E-09 73.8 7.2 83 193-275 99-189 (245)
116 3rc3_A ATP-dependent RNA helic 97.5 0.00029 1E-08 81.2 11.5 122 396-538 154-280 (677)
117 1nkt_A Preprotein translocase 97.5 0.00059 2E-08 79.5 13.3 120 374-514 112-244 (922)
118 3oiy_A Reverse gyrase helicase 97.5 7E-05 2.4E-09 81.1 5.4 82 193-274 65-152 (414)
119 2i4i_A ATP-dependent RNA helic 97.5 0.00011 3.7E-09 79.3 6.7 84 193-276 102-190 (417)
120 4b3f_X DNA-binding protein smu 97.5 0.00047 1.6E-08 79.4 12.4 70 370-454 186-256 (646)
121 2w00_A HSDR, R.ECOR124I; ATP-b 97.5 3E-05 1E-09 93.4 2.3 104 192-300 330-439 (1038)
122 2db3_A ATP-dependent RNA helic 97.5 0.00011 3.8E-09 80.4 6.5 85 192-276 129-218 (434)
123 2fsf_A Preprotein translocase 97.4 0.00037 1.3E-08 80.9 10.8 121 373-514 74-207 (853)
124 1tf5_A Preprotein translocase 97.4 0.00038 1.3E-08 81.0 9.5 120 374-514 84-216 (844)
125 3ly5_A ATP-dependent RNA helic 97.3 0.00024 8.2E-09 72.2 6.0 85 192-276 126-216 (262)
126 3fe2_A Probable ATP-dependent 97.2 0.00026 8.9E-09 70.8 5.8 85 192-276 102-191 (242)
127 3fht_A ATP-dependent RNA helic 97.2 0.00036 1.2E-08 74.9 7.0 80 193-275 96-182 (412)
128 3fho_A ATP-dependent RNA helic 97.2 0.00037 1.3E-08 77.9 6.3 82 192-275 189-273 (508)
129 3e1s_A Exodeoxyribonuclease V, 97.1 0.0018 6.3E-08 73.3 11.7 131 372-542 188-318 (574)
130 2gk6_A Regulator of nonsense t 97.0 0.0024 8.2E-08 73.2 11.8 148 372-542 179-376 (624)
131 2xgj_A ATP-dependent RNA helic 97.0 0.00087 3E-08 80.9 7.8 97 193-298 130-232 (1010)
132 1gm5_A RECG; helicase, replica 97.0 0.0017 5.9E-08 76.0 10.1 100 193-298 418-525 (780)
133 2v1x_A ATP-dependent DNA helic 96.9 0.00081 2.8E-08 76.6 6.7 83 193-277 85-181 (591)
134 1oyw_A RECQ helicase, ATP-depe 96.9 0.00089 3.1E-08 75.1 6.7 105 193-299 66-184 (523)
135 2xzl_A ATP-dependent helicase 96.8 0.0036 1.2E-07 73.6 10.8 147 372-542 359-554 (802)
136 3upu_A ATP-dependent DNA helic 96.8 0.0055 1.9E-07 67.4 11.6 143 372-541 24-166 (459)
137 3sqw_A ATP-dependent RNA helic 96.7 0.0013 4.4E-08 74.6 6.2 84 193-276 96-190 (579)
138 1w36_D RECD, exodeoxyribonucle 96.7 0.0046 1.6E-07 70.6 10.2 152 375-545 151-304 (608)
139 2o0j_A Terminase, DNA packagin 96.6 0.01 3.4E-07 63.7 11.9 155 373-553 163-325 (385)
140 2wjy_A Regulator of nonsense t 96.6 0.006 2E-07 71.7 10.7 148 372-542 355-552 (800)
141 3fmp_B ATP-dependent RNA helic 96.6 0.0023 7.8E-08 70.6 6.7 79 194-275 164-249 (479)
142 4a4z_A Antiviral helicase SKI2 96.4 0.0039 1.3E-07 75.1 7.9 99 193-298 83-187 (997)
143 2eyq_A TRCF, transcription-rep 96.4 0.0033 1.1E-07 77.0 7.3 101 193-299 653-761 (1151)
144 3fmo_B ATP-dependent RNA helic 96.4 0.0029 1E-07 65.5 5.6 80 193-275 163-249 (300)
145 3i5x_A ATP-dependent RNA helic 96.3 0.0032 1.1E-07 70.9 6.1 84 193-276 147-241 (563)
146 2p6r_A Afuhel308 helicase; pro 96.2 0.0055 1.9E-07 71.1 7.5 81 193-276 69-153 (702)
147 2zj8_A DNA helicase, putative 96.2 0.005 1.7E-07 71.7 6.9 80 193-275 69-152 (720)
148 2b8t_A Thymidine kinase; deoxy 96.2 0.029 9.9E-07 55.4 11.3 111 397-538 12-124 (223)
149 2orw_A Thymidine kinase; TMTK, 96.2 0.0064 2.2E-07 58.3 6.3 35 400-441 6-40 (184)
150 3cpe_A Terminase, DNA packagin 96.1 0.029 9.9E-07 63.7 12.6 150 373-542 163-316 (592)
151 3l9o_A ATP-dependent RNA helic 96.0 0.0081 2.8E-07 73.2 7.6 75 193-276 228-305 (1108)
152 2j9r_A Thymidine kinase; TK1, 95.9 0.045 1.5E-06 53.6 10.9 33 402-441 33-65 (214)
153 2va8_A SSO2462, SKI2-type heli 95.8 0.0091 3.1E-07 69.4 6.4 104 193-299 76-185 (715)
154 3lfu_A DNA helicase II; SF1 he 95.7 0.082 2.8E-06 60.3 14.2 73 370-456 6-79 (647)
155 3jux_A Protein translocase sub 95.6 0.14 4.9E-06 58.7 15.1 60 398-464 89-152 (822)
156 4ddu_A Reverse gyrase; topoiso 95.5 0.0097 3.3E-07 72.4 5.6 83 193-275 122-210 (1104)
157 1xx6_A Thymidine kinase; NESG, 95.2 0.047 1.6E-06 52.6 8.3 122 399-554 10-138 (191)
158 1gku_B Reverse gyrase, TOP-RG; 94.7 0.019 6.6E-07 69.6 4.8 81 193-275 100-189 (1054)
159 2p65_A Hypothetical protein PF 94.6 0.25 8.7E-06 45.7 11.5 42 379-423 28-69 (187)
160 2orv_A Thymidine kinase; TP4A 94.6 0.12 4.1E-06 51.1 9.3 35 400-441 22-56 (234)
161 4b4t_J 26S protease regulatory 94.5 0.12 4.2E-06 55.4 9.9 76 394-514 179-254 (405)
162 3vkw_A Replicase large subunit 94.3 0.054 1.9E-06 58.8 6.8 110 398-542 162-272 (446)
163 3syl_A Protein CBBX; photosynt 94.2 0.13 4.3E-06 52.8 9.1 30 396-425 66-95 (309)
164 3crv_A XPD/RAD3 related DNA he 94.0 0.049 1.7E-06 61.2 5.9 40 239-279 148-190 (551)
165 1l8q_A Chromosomal replication 93.9 0.56 1.9E-05 48.3 13.3 114 396-552 36-157 (324)
166 1a5t_A Delta prime, HOLB; zinc 93.8 0.46 1.6E-05 49.5 12.7 50 374-425 3-52 (334)
167 1jbk_A CLPB protein; beta barr 93.8 0.27 9.2E-06 45.5 9.8 29 395-423 41-69 (195)
168 1c4o_A DNA nucleotide excision 93.6 0.17 6E-06 58.1 9.6 77 373-463 8-85 (664)
169 3ec2_A DNA replication protein 93.5 0.21 7.2E-06 46.8 8.5 47 376-422 17-63 (180)
170 3eie_A Vacuolar protein sortin 93.5 0.15 5.3E-06 52.8 8.1 26 396-421 50-75 (322)
171 4b4t_L 26S protease subunit RP 92.9 0.22 7.5E-06 54.1 8.5 76 394-514 212-287 (437)
172 4b4t_I 26S protease regulatory 92.8 0.24 8.3E-06 53.4 8.5 76 394-514 213-288 (437)
173 2qby_B CDC6 homolog 3, cell di 92.7 0.61 2.1E-05 49.0 11.6 29 396-424 44-72 (384)
174 2vl7_A XPD; helicase, unknown 92.3 0.11 3.8E-06 58.2 5.4 35 239-273 144-187 (540)
175 4b4t_H 26S protease regulatory 92.2 0.38 1.3E-05 52.4 9.2 76 394-514 240-315 (467)
176 2d7d_A Uvrabc system protein B 92.2 0.38 1.3E-05 55.2 9.8 77 373-463 12-89 (661)
177 2qp9_X Vacuolar protein sortin 92.2 0.22 7.5E-06 52.6 7.2 26 396-421 83-108 (355)
178 3bos_A Putative DNA replicatio 92.1 0.33 1.1E-05 47.1 8.0 45 378-425 36-80 (242)
179 1w4r_A Thymidine kinase; type 91.7 0.46 1.6E-05 45.7 8.0 35 400-441 23-57 (195)
180 2chg_A Replication factor C sm 91.7 1.4 4.8E-05 41.6 11.8 28 397-424 38-65 (226)
181 3o8b_A HCV NS3 protease/helica 91.6 0.32 1.1E-05 55.6 8.1 71 194-273 259-330 (666)
182 4b4t_M 26S protease regulatory 91.5 0.21 7.1E-06 54.2 6.1 46 394-449 212-257 (434)
183 3vfd_A Spastin; ATPase, microt 91.4 1.1 3.8E-05 47.5 11.9 42 396-447 147-188 (389)
184 4b4t_K 26S protease regulatory 91.3 0.32 1.1E-05 52.7 7.4 44 394-447 203-246 (428)
185 3e2i_A Thymidine kinase; Zn-bi 91.3 0.44 1.5E-05 46.5 7.6 35 400-441 31-65 (219)
186 3u61_B DNA polymerase accessor 90.9 0.62 2.1E-05 47.9 8.9 55 501-555 105-161 (324)
187 3te6_A Regulatory protein SIR3 90.9 5.1 0.00017 41.4 15.7 49 375-425 25-73 (318)
188 1xwi_A SKD1 protein; VPS4B, AA 90.8 0.24 8.1E-06 51.5 5.5 26 396-421 44-69 (322)
189 2w58_A DNAI, primosome compone 90.7 0.88 3E-05 43.2 9.2 28 398-425 55-82 (202)
190 2qz4_A Paraplegin; AAA+, SPG7, 90.5 0.92 3.1E-05 44.8 9.5 26 396-421 38-63 (262)
191 3llm_A ATP-dependent RNA helic 90.3 0.45 1.5E-05 46.8 6.9 76 194-272 111-187 (235)
192 3h4m_A Proteasome-activating n 89.6 0.27 9.3E-06 49.6 4.7 26 395-420 49-74 (285)
193 3uk6_A RUVB-like 2; hexameric 89.5 0.91 3.1E-05 47.4 8.9 47 376-423 50-96 (368)
194 2z4s_A Chromosomal replication 89.4 1.7 6E-05 47.0 11.3 29 397-425 130-158 (440)
195 1d2n_A N-ethylmaleimide-sensit 89.4 1.1 3.9E-05 44.7 9.2 26 395-420 62-87 (272)
196 2gno_A DNA polymerase III, gam 89.3 1.9 6.6E-05 44.3 10.9 40 378-420 2-41 (305)
197 3dm5_A SRP54, signal recogniti 89.3 2.4 8.1E-05 46.0 12.0 27 399-425 102-128 (443)
198 1iqp_A RFCS; clamp loader, ext 88.8 2.2 7.4E-05 43.4 11.0 26 398-423 47-72 (327)
199 2jlq_A Serine protease subunit 88.2 0.81 2.8E-05 49.8 7.6 72 193-273 49-122 (451)
200 3kl4_A SRP54, signal recogniti 88.0 3.3 0.00011 44.7 12.2 118 399-540 99-224 (433)
201 1sxj_B Activator 1 37 kDa subu 87.6 1.1 3.7E-05 45.6 7.8 26 398-423 43-68 (323)
202 2zan_A Vacuolar protein sortin 87.4 0.44 1.5E-05 51.9 4.8 43 396-447 166-208 (444)
203 1fnn_A CDC6P, cell division co 87.0 7.9 0.00027 40.2 14.4 26 399-424 46-71 (389)
204 2v6i_A RNA helicase; membrane, 86.6 1.6 5.5E-05 47.1 8.7 52 434-487 173-225 (431)
205 1sxj_D Activator 1 41 kDa subu 86.4 1.8 6.3E-05 44.6 8.9 123 398-551 59-184 (353)
206 2v1u_A Cell division control p 86.4 3.7 0.00013 42.7 11.3 29 395-423 42-70 (387)
207 1njg_A DNA polymerase III subu 86.2 4.2 0.00014 38.6 10.8 27 398-424 46-72 (250)
208 1qvr_A CLPB protein; coiled co 86.0 3.1 0.00011 49.1 11.4 43 378-423 175-217 (854)
209 3d8b_A Fidgetin-like protein 1 85.8 0.99 3.4E-05 47.4 6.4 26 395-420 115-140 (357)
210 3cf0_A Transitional endoplasmi 85.7 0.8 2.7E-05 46.8 5.4 27 395-421 47-73 (301)
211 2r2a_A Uncharacterized protein 85.4 0.72 2.5E-05 44.4 4.6 22 400-421 8-29 (199)
212 1jr3_A DNA polymerase III subu 85.0 3.2 0.00011 43.1 9.9 26 398-423 39-64 (373)
213 1r6b_X CLPA protein; AAA+, N-t 84.9 2 6.9E-05 49.9 9.0 43 378-423 191-233 (758)
214 3n70_A Transport activator; si 84.5 0.68 2.3E-05 41.7 3.8 25 395-419 22-46 (145)
215 4dzz_A Plasmid partitioning pr 83.5 5.8 0.0002 37.2 10.2 112 403-554 8-121 (206)
216 3t15_A Ribulose bisphosphate c 83.5 1.5 5.1E-05 44.7 6.3 26 396-421 35-60 (293)
217 3pvs_A Replication-associated 83.3 2.3 7.8E-05 46.3 8.0 24 398-421 51-74 (447)
218 3cf2_A TER ATPase, transitiona 82.9 1.2 4E-05 52.1 5.8 75 395-514 509-583 (806)
219 2bjv_A PSP operon transcriptio 82.6 5.4 0.00018 39.4 10.0 26 396-421 28-53 (265)
220 1w5s_A Origin recognition comp 81.9 6.2 0.00021 41.5 10.7 49 375-423 27-78 (412)
221 2c9o_A RUVB-like 1; hexameric 81.6 1.7 5.7E-05 47.3 6.1 27 396-422 62-88 (456)
222 2fsf_A Preprotein translocase 81.4 0.83 2.8E-05 53.2 3.7 79 194-275 117-208 (853)
223 2kjq_A DNAA-related protein; s 81.4 3.8 0.00013 37.1 7.6 28 396-423 35-62 (149)
224 2zts_A Putative uncharacterize 80.9 4.6 0.00016 39.1 8.7 53 396-454 29-81 (251)
225 1g5t_A COB(I)alamin adenosyltr 80.9 3.7 0.00013 39.3 7.5 143 396-554 27-174 (196)
226 3b9p_A CG5977-PA, isoform A; A 80.6 1.2 4.2E-05 45.0 4.4 26 396-421 53-78 (297)
227 2q6t_A DNAB replication FORK h 80.4 17 0.00058 39.1 13.7 116 395-516 198-325 (444)
228 1nkt_A Preprotein translocase 79.9 1.2 4E-05 52.2 4.3 80 193-275 153-245 (922)
229 3hu3_A Transitional endoplasmi 79.8 2.2 7.6E-05 46.9 6.4 26 395-420 236-261 (489)
230 2z83_A Helicase/nucleoside tri 79.7 3 0.0001 45.4 7.3 51 434-486 192-243 (459)
231 2qby_A CDC6 homolog 1, cell di 79.5 6.8 0.00023 40.5 9.9 30 395-424 43-72 (386)
232 3cf2_A TER ATPase, transitiona 79.3 2.8 9.7E-05 48.9 7.3 25 395-419 236-260 (806)
233 2ce7_A Cell division protein F 79.2 4.8 0.00016 44.0 8.8 26 396-421 48-73 (476)
234 2r8r_A Sensor protein; KDPD, P 78.7 5.2 0.00018 39.2 7.9 29 398-426 7-35 (228)
235 1sxj_C Activator 1 40 kDa subu 78.4 5.1 0.00018 41.3 8.4 43 378-423 30-72 (340)
236 1sxj_A Activator 1 95 kDa subu 78.3 5.6 0.00019 43.9 9.1 25 397-421 77-101 (516)
237 3bh0_A DNAB-like replicative h 77.9 26 0.00088 35.7 13.5 114 395-515 66-195 (315)
238 2whx_A Serine protease/ntpase/ 77.7 5.8 0.0002 44.9 9.1 72 193-273 216-289 (618)
239 3co5_A Putative two-component 77.6 2.1 7.2E-05 38.3 4.5 23 396-418 26-48 (143)
240 1tf5_A Preprotein translocase 77.4 1.5 5.2E-05 51.1 4.2 79 193-274 125-216 (844)
241 2r6a_A DNAB helicase, replicat 77.3 19 0.00065 38.8 12.9 115 395-515 201-327 (454)
242 1vma_A Cell division protein F 77.2 7.8 0.00027 39.7 9.2 26 400-425 107-132 (306)
243 1uaa_A REP helicase, protein ( 76.6 6.6 0.00023 44.8 9.4 70 373-456 2-72 (673)
244 2chq_A Replication factor C sm 76.5 1.1 3.9E-05 45.4 2.6 42 378-422 22-63 (319)
245 3rc3_A ATP-dependent RNA helic 76.4 2.5 8.6E-05 48.4 5.7 73 194-276 181-254 (677)
246 2cvh_A DNA repair and recombin 76.0 32 0.0011 32.2 12.9 44 396-449 19-64 (220)
247 2dr3_A UPF0273 protein PH0284; 75.4 17 0.00059 34.8 10.9 50 396-452 22-71 (247)
248 4fcw_A Chaperone protein CLPB; 75.4 4.3 0.00015 41.0 6.7 26 398-423 48-73 (311)
249 2px0_A Flagellar biosynthesis 75.4 15 0.00051 37.3 10.7 25 399-423 107-131 (296)
250 2w0m_A SSO2452; RECA, SSPF, un 74.4 31 0.0011 32.5 12.4 49 396-451 22-70 (235)
251 4a1f_A DNAB helicase, replicat 74.3 17 0.00059 37.7 11.0 113 396-515 45-170 (338)
252 1sxj_E Activator 1 40 kDa subu 74.2 12 0.0004 38.5 9.8 44 377-422 18-61 (354)
253 2ipc_A Preprotein translocase 73.4 1.9 6.4E-05 50.6 3.5 79 193-274 121-215 (997)
254 1zu4_A FTSY; GTPase, signal re 73.1 22 0.00075 36.5 11.4 34 400-440 108-141 (320)
255 1ojl_A Transcriptional regulat 72.6 8 0.00027 39.4 7.9 25 396-420 24-48 (304)
256 2xau_A PRE-mRNA-splicing facto 72.5 3.9 0.00013 47.7 6.1 77 193-272 141-219 (773)
257 3pfi_A Holliday junction ATP-d 72.2 19 0.00066 36.6 10.9 25 396-420 54-78 (338)
258 1ls1_A Signal recognition part 69.8 21 0.00073 36.1 10.3 33 401-440 102-134 (295)
259 2zr9_A Protein RECA, recombina 69.5 7.3 0.00025 40.7 6.9 45 396-447 60-104 (349)
260 3bgw_A DNAB-like replicative h 69.1 28 0.00096 37.5 11.6 114 395-515 195-324 (444)
261 3pxi_A Negative regulator of g 68.9 6.8 0.00023 45.4 7.1 26 399-424 523-548 (758)
262 4a15_A XPD helicase, ATP-depen 68.9 1.7 5.8E-05 49.3 1.9 39 238-276 174-219 (620)
263 2fna_A Conserved hypothetical 67.2 34 0.0012 34.5 11.5 24 398-421 31-54 (357)
264 2xxa_A Signal recognition part 67.2 11 0.00038 40.6 7.8 35 399-440 102-137 (433)
265 2wv9_A Flavivirin protease NS2 67.0 4.6 0.00016 46.2 5.0 51 434-486 412-463 (673)
266 1xp8_A RECA protein, recombina 66.6 22 0.00076 37.3 9.9 91 396-514 73-165 (366)
267 1qvr_A CLPB protein; coiled co 65.9 25 0.00087 41.2 11.3 26 398-423 589-614 (854)
268 1pjr_A PCRA; DNA repair, DNA r 65.6 12 0.0004 43.2 8.1 71 371-455 9-80 (724)
269 1yks_A Genome polyprotein [con 65.5 4.2 0.00014 43.9 4.2 51 434-486 179-230 (440)
270 2zpa_A Uncharacterized protein 63.0 16 0.00054 41.6 8.3 52 373-441 175-226 (671)
271 2z43_A DNA repair and recombin 62.4 40 0.0014 34.3 10.8 47 396-443 106-152 (324)
272 2qgz_A Helicase loader, putati 62.2 16 0.00056 37.1 7.7 29 397-425 152-181 (308)
273 1r6b_X CLPA protein; AAA+, N-t 62.0 20 0.0007 41.3 9.4 23 399-421 490-512 (758)
274 2ffh_A Protein (FFH); SRP54, s 61.9 22 0.00077 38.1 9.0 34 400-440 101-134 (425)
275 1u94_A RECA protein, recombina 60.5 39 0.0013 35.2 10.3 40 396-442 62-101 (356)
276 3fkq_A NTRC-like two-domain pr 58.2 68 0.0023 33.3 11.9 33 400-439 147-179 (373)
277 3hjh_A Transcription-repair-co 57.1 28 0.00096 38.0 8.8 83 398-491 15-114 (483)
278 1n0w_A DNA repair protein RAD5 53.3 1.1E+02 0.0036 28.9 11.6 25 396-420 23-47 (243)
279 2v3c_C SRP54, signal recogniti 53.0 22 0.00074 38.3 7.0 35 399-440 101-135 (432)
280 3k1j_A LON protease, ATP-depen 52.9 29 0.00099 38.9 8.4 53 396-448 59-118 (604)
281 3hr8_A Protein RECA; alpha and 52.0 64 0.0022 33.6 10.2 42 397-445 61-102 (356)
282 1nlf_A Regulatory protein REPA 51.8 1.3E+02 0.0046 29.4 12.4 58 396-453 29-89 (279)
283 1j8m_F SRP54, signal recogniti 51.7 28 0.00096 35.2 7.3 34 400-440 101-134 (297)
284 1ixz_A ATP-dependent metallopr 51.6 19 0.00065 35.1 5.9 26 396-421 48-73 (254)
285 3cmu_A Protein RECA, recombina 51.1 42 0.0014 43.1 9.9 44 394-444 1424-1467(2050)
286 3u4q_B ATP-dependent helicase/ 50.2 26 0.00091 42.6 8.0 51 402-456 6-56 (1166)
287 1v5w_A DMC1, meiotic recombina 49.7 1.1E+02 0.0039 31.2 11.8 46 396-442 121-166 (343)
288 1byi_A Dethiobiotin synthase; 49.2 18 0.00063 34.2 5.2 34 400-440 5-38 (224)
289 4ehx_A Tetraacyldisaccharide 4 48.6 32 0.0011 35.2 7.1 20 405-424 46-65 (315)
290 3io5_A Recombination and repai 48.2 52 0.0018 33.9 8.5 41 399-444 30-70 (333)
291 3cmu_A Protein RECA, recombina 47.6 34 0.0012 43.9 8.4 90 396-515 731-824 (2050)
292 2x8a_A Nuclear valosin-contain 46.4 32 0.0011 34.2 6.7 26 395-420 42-67 (274)
293 2dhr_A FTSH; AAA+ protein, hex 46.3 41 0.0014 36.8 8.0 24 397-420 64-87 (499)
294 1q57_A DNA primase/helicase; d 45.4 73 0.0025 34.5 10.0 50 395-451 240-290 (503)
295 3bfv_A CAPA1, CAPB2, membrane 45.4 41 0.0014 33.4 7.3 53 379-438 63-117 (271)
296 2j37_W Signal recognition part 45.1 47 0.0016 36.4 8.2 35 399-440 103-137 (504)
297 1iy2_A ATP-dependent metallopr 44.7 29 0.001 34.3 6.1 25 397-421 73-97 (278)
298 1u0j_A DNA replication protein 44.2 45 0.0015 33.3 7.2 25 397-421 104-128 (267)
299 3cio_A ETK, tyrosine-protein k 44.1 39 0.0013 34.1 6.9 32 401-439 109-140 (299)
300 2orw_A Thymidine kinase; TMTK, 43.0 3.7 0.00013 38.6 -1.0 48 261-311 76-124 (184)
301 1vc3_B L-aspartate-alpha-decar 42.7 9.9 0.00034 31.7 1.7 31 242-274 61-91 (96)
302 1cr0_A DNA primase/helicase; R 42.7 1.1E+02 0.0036 30.3 10.0 41 395-441 33-73 (296)
303 3fwy_A Light-independent proto 42.4 17 0.00058 37.2 3.9 27 406-439 57-83 (314)
304 2i1q_A DNA repair and recombin 42.1 1.1E+02 0.0038 30.7 10.2 26 396-421 97-122 (322)
305 1ofh_A ATP-dependent HSL prote 40.6 34 0.0012 33.9 5.9 26 396-421 49-74 (310)
306 3u4q_A ATP-dependent helicase/ 40.4 30 0.001 42.4 6.3 69 372-452 9-78 (1232)
307 1g3q_A MIND ATPase, cell divis 40.1 26 0.00088 33.5 4.7 33 401-440 7-39 (237)
308 1ypw_A Transitional endoplasmi 39.5 26 0.00089 40.9 5.3 25 395-419 236-260 (806)
309 1cp2_A CP2, nitrogenase iron p 39.2 20 0.00068 35.2 3.7 23 403-425 7-29 (269)
310 3of5_A Dethiobiotin synthetase 39.1 23 0.00077 34.4 4.0 27 400-426 8-34 (228)
311 1hyq_A MIND, cell division inh 38.3 31 0.0011 33.5 5.1 33 400-439 6-38 (263)
312 3kjh_A CO dehydrogenase/acetyl 38.0 14 0.0005 35.4 2.5 29 403-438 6-34 (254)
313 3q9l_A Septum site-determining 37.9 29 0.00098 33.6 4.7 64 486-555 98-161 (260)
314 2oze_A ORF delta'; para, walke 37.7 23 0.00077 35.5 3.9 28 404-438 44-71 (298)
315 3cmw_A Protein RECA, recombina 37.6 98 0.0033 39.1 10.2 45 395-446 730-774 (1706)
316 3qxc_A Dethiobiotin synthetase 37.4 24 0.00081 34.7 3.9 27 400-426 25-51 (242)
317 3end_A Light-independent proto 37.2 23 0.00078 35.7 3.9 29 403-438 47-75 (307)
318 2afh_E Nitrogenase iron protei 36.7 24 0.00082 35.2 3.9 23 403-425 8-30 (289)
319 2ph1_A Nucleotide-binding prot 35.9 31 0.0011 33.8 4.6 33 400-439 22-54 (262)
320 1tue_A Replication protein E1; 35.5 27 0.00092 33.6 3.8 24 398-421 59-82 (212)
321 2ehv_A Hypothetical protein PH 35.4 1.8E+02 0.0062 27.3 10.1 25 396-420 29-53 (251)
322 3k9g_A PF-32 protein; ssgcid, 34.5 24 0.00081 34.6 3.4 30 401-438 32-61 (267)
323 3la6_A Tyrosine-protein kinase 34.2 38 0.0013 34.0 4.9 33 400-439 96-128 (286)
324 3fgn_A Dethiobiotin synthetase 34.2 28 0.00097 34.4 3.9 27 400-426 30-56 (251)
325 3zq6_A Putative arsenical pump 34.2 37 0.0013 34.6 5.0 34 400-440 17-50 (324)
326 3plx_B Aspartate 1-decarboxyla 33.5 13 0.00045 31.3 1.1 31 242-274 60-90 (102)
327 2c45_A Aspartate 1-decarboxyla 33.4 20 0.00068 31.8 2.2 32 242-275 85-116 (139)
328 3ea0_A ATPase, para family; al 33.4 38 0.0013 32.4 4.6 25 400-424 8-32 (245)
329 3lda_A DNA repair protein RAD5 33.2 4E+02 0.014 27.9 12.9 47 395-442 176-222 (400)
330 3cwq_A Para family chromosome 32.8 1.6E+02 0.0053 27.6 8.9 42 401-450 5-48 (209)
331 3ug7_A Arsenical pump-driving 32.5 41 0.0014 34.8 5.0 33 400-439 29-61 (349)
332 1um8_A ATP-dependent CLP prote 31.3 37 0.0013 35.3 4.4 26 396-421 71-96 (376)
333 2r44_A Uncharacterized protein 30.4 39 0.0013 34.2 4.3 25 397-421 46-70 (331)
334 3pg5_A Uncharacterized protein 30.2 26 0.00088 36.5 2.9 28 404-438 9-36 (361)
335 1pqh_A Aspartate 1-decarboxyla 29.7 20 0.00069 31.9 1.6 32 242-275 102-133 (143)
336 3vkw_A Replicase large subunit 29.3 9.3 0.00032 41.3 -0.7 82 193-297 185-267 (446)
337 3hws_A ATP-dependent CLP prote 28.8 60 0.002 33.4 5.5 26 396-421 50-75 (363)
338 2woo_A ATPase GET3; tail-ancho 28.7 51 0.0017 33.7 4.9 34 399-439 21-54 (329)
339 1wcv_1 SOJ, segregation protei 27.8 33 0.0011 33.4 3.1 30 403-439 13-42 (257)
340 2j9r_A Thymidine kinase; TK1, 27.4 14 0.00048 35.7 0.2 50 261-313 101-151 (214)
341 3pxg_A Negative regulator of g 27.4 63 0.0021 34.8 5.5 43 378-423 185-227 (468)
342 2xj4_A MIPZ; replication, cell 27.3 44 0.0015 33.2 4.0 40 403-449 11-53 (286)
343 1ihu_A Arsenical pump-driving 27.3 68 0.0023 35.6 6.0 36 397-439 8-43 (589)
344 2b8t_A Thymidine kinase; deoxy 27.1 18 0.00062 35.1 1.0 66 242-310 69-136 (223)
345 2r2a_A Uncharacterized protein 26.9 20 0.00067 34.2 1.2 17 259-275 85-101 (199)
346 2orv_A Thymidine kinase; TP4A 26.4 15 0.00051 36.0 0.2 49 260-312 89-138 (234)
347 2r62_A Cell division protease 26.3 33 0.0011 33.5 2.8 26 396-421 43-68 (268)
348 1lv7_A FTSH; alpha/beta domain 26.1 47 0.0016 32.2 3.9 25 397-421 45-69 (257)
349 1xx6_A Thymidine kinase; NESG, 24.6 13 0.00046 35.1 -0.5 49 261-312 81-130 (191)
350 3iqw_A Tail-anchored protein t 23.9 64 0.0022 33.2 4.6 43 398-447 17-61 (334)
351 3ez2_A Plasmid partition prote 23.5 54 0.0018 34.4 4.0 23 401-423 113-135 (398)
352 2qen_A Walker-type ATPase; unk 22.9 55 0.0019 32.9 3.8 23 398-420 32-54 (350)
353 2woj_A ATPase GET3; tail-ancho 22.5 71 0.0024 33.1 4.6 34 400-440 21-56 (354)
354 3tqf_A HPR(Ser) kinase; transf 22.0 56 0.0019 30.6 3.2 24 396-419 15-38 (181)
355 2ewv_A Twitching motility prot 21.6 6.4E+02 0.022 25.8 11.9 28 397-424 136-163 (372)
356 3igf_A ALL4481 protein; two-do 20.8 42 0.0014 35.3 2.4 37 404-447 9-46 (374)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-49 Score=460.25 Aligned_cols=309 Identities=42% Similarity=0.734 Sum_probs=267.3
Q ss_pred ccccCcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 363 ~~~~p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
.+.+||.+...|||||++|++||++++.+....++.||||||+||+|||+|+|+++..+...++...|..+++|||||.+
T Consensus 45 ~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~s 124 (644)
T 1z3i_X 45 HVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS 124 (644)
T ss_dssp CEECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH
T ss_pred eEeeChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHH
Confidence 35678889999999999999999987543323567899999999999999999999999888776666778899999999
Q ss_pred hHHHHHHHHHHHhCC-CCeeEeecCCcchh-h---hhhhc----CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc
Q psy12466 443 LTSNWNDEFKKWLGL-TRMCPYHVNQKNKA-E---DYVYS----RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513 (680)
Q Consensus 443 ll~qW~~E~~~~~~~-~~v~~~~~~~~~~~-~---~~~~~----~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~ 513 (680)
++.||.+||.+|++. ..+..+++...... . .+... ..++|+|+||+++......+....|++||+||||++
T Consensus 125 ll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 125 LVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceec
Confidence 999999999999975 44444444332211 1 11111 247899999999999888888899999999999999
Q ss_pred cCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHH
Q psy12466 514 KNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593 (680)
Q Consensus 514 kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~ 593 (680)
||..++.++++..+++.+||+|||||++|++.|||++++|++|+.+++...|.+.|..|+..+...+.+......+..+.
T Consensus 205 kn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 284 (644)
T 1z3i_X 205 KNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKL 284 (644)
T ss_dssp CTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHH
T ss_pred CChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888877888888889
Q ss_pred HHHHHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHhccCcc
Q psy12466 594 SQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------SRDSHLSVTHALRKICNHPG 667 (680)
Q Consensus 594 ~~L~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------~~~~~l~~l~~LRqicnHP~ 667 (680)
..|+.++.||++||+++++...||++.+.+++|+||+.|+++|+.+++...... .....+..+++|||+||||.
T Consensus 285 ~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 285 QELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999999999999999999987764332 23467899999999999999
Q ss_pred ccCC
Q psy12466 668 LVQQ 671 (680)
Q Consensus 668 L~~~ 671 (680)
|+..
T Consensus 365 l~~~ 368 (644)
T 1z3i_X 365 LIYE 368 (644)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9853
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-44 Score=424.80 Aligned_cols=280 Identities=30% Similarity=0.402 Sum_probs=231.6
Q ss_pred ccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHH
Q psy12466 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWN 448 (680)
Q Consensus 369 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~ 448 (680)
....+|||||++||+||+.. ...++||||||+||+|||+|+|+++..+...... .+|+|||||.+++.||.
T Consensus 232 ~~~~~Lr~yQ~egv~~l~~~-----~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~----~~~~LIV~P~sll~qW~ 302 (800)
T 3mwy_W 232 IKGGELRDFQLTGINWMAFL-----WSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ----NGPHIIVVPLSTMPAWL 302 (800)
T ss_dssp CCSSCCCTHHHHHHHHHHHH-----HTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC----CSCEEEECCTTTHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHH-----hhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC----CCCEEEEECchHHHHHH
Confidence 34679999999999999864 3457899999999999999999999887654332 35699999999999999
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhh------------hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDY------------VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~------------~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~ 516 (680)
+||.+|+|...+.++++....+.... .....++|+|+||+++.+....+....|++||+||||++||.
T Consensus 303 ~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 303 DTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp HHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCS
T ss_pred HHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCc
Confidence 99999999999999998876543211 123467899999999999988899999999999999999999
Q ss_pred ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHH
Q psy12466 517 KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQL 596 (680)
Q Consensus 517 ~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L 596 (680)
.++.++++..+++.+||+|||||++|++.|||++++||.|+.|+....|...... .........|
T Consensus 383 ~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---------------~~~~~~~~~L 447 (800)
T 3mwy_W 383 ESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---------------EEQEEYIHDL 447 (800)
T ss_dssp SSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---------------THHHHHHHHH
T ss_pred hhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccc---------------hhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876665321111 1123456789
Q ss_pred HHHhccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHhccCccccC
Q psy12466 597 AKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA------SRDSHLSVTHALRKICNHPGLVQ 670 (680)
Q Consensus 597 ~~~l~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~------~~~~~l~~l~~LRqicnHP~L~~ 670 (680)
+.+++||++||++.++...||++.+.+++|+||+.|+++|+.++......+ .....++.+++||++||||+|+.
T Consensus 448 ~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~ 527 (800)
T 3mwy_W 448 HRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFD 527 (800)
T ss_dssp HHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSS
T ss_pred HHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhc
Confidence 999999999999999999999999999999999999999999887543222 34568999999999999999986
Q ss_pred CC
Q psy12466 671 QP 672 (680)
Q Consensus 671 ~~ 672 (680)
..
T Consensus 528 ~~ 529 (800)
T 3mwy_W 528 NA 529 (800)
T ss_dssp SH
T ss_pred ch
Confidence 54
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.9e-42 Score=389.67 Aligned_cols=278 Identities=29% Similarity=0.489 Sum_probs=239.5
Q ss_pred CcccccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHH
Q psy12466 367 DGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSN 446 (680)
Q Consensus 367 p~~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~q 446 (680)
|..+...|+|||++|+.||.... ..+.||||||+||+|||+++++++..+...+. .+++|||||.+++.|
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~-----~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-----~~~~LIv~P~~l~~q 100 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMN-----KLGFGICLADDMGLGKTLQTIAVFSDAKKENE-----LTPSLVICPLSVLKN 100 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHH-----HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-----CSSEEEEECSTTHHH
T ss_pred ChhhhccchHHHHHHHHHHHHHh-----hCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-----CCCEEEEccHHHHHH
Confidence 66788999999999999997642 34579999999999999999999998876553 356999999999999
Q ss_pred HHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHh
Q psy12466 447 WNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG 526 (680)
Q Consensus 447 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~ 526 (680)
|.+|+.+|+|..++.++++.... .....++|+|+||+++.+... +....|++||+||||+++|..++.++++..
T Consensus 101 w~~e~~~~~~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~ 174 (500)
T 1z63_A 101 WEEELSKFAPHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKE 174 (500)
T ss_dssp HHHHHHHHCTTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHT
T ss_pred HHHHHHHHCCCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHh
Confidence 99999999999988888776532 122357899999999987654 667789999999999999999999999999
Q ss_pred cccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceee
Q psy12466 527 LNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606 (680)
Q Consensus 527 l~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lR 606 (680)
+.+.++|+|||||++|++.|+|++++|++|+.+++...|.+.|..|+..+. ......|+.++.||++|
T Consensus 175 l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~------------~~~~~~l~~~l~~~~lr 242 (500)
T 1z63_A 175 LKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD------------NMAKEELKAIISPFILR 242 (500)
T ss_dssp SCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC------------HHHHHHHHHHHTTTEEC
T ss_pred hccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc------------HHHHHHHHHHHhhHeee
Confidence 999999999999999999999999999999999999999999999886531 23456799999999999
Q ss_pred echhH--HhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHhccCccccCCC
Q psy12466 607 RTSDV--QASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA-------SRDSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 607 rtk~~--v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-------~~~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
|++.+ +...||++.+.+++|+|++.|+++|+.+.+...... +.+..+..+++||++|+||.++...
T Consensus 243 r~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~ 317 (500)
T 1z63_A 243 RTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 317 (500)
T ss_dssp CCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred ecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCc
Confidence 99864 667899999999999999999999999887654433 3345788899999999999987643
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.95 E-value=4e-28 Score=292.38 Aligned_cols=255 Identities=20% Similarity=0.297 Sum_probs=188.4
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDE 450 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E 450 (680)
...|+|||.+++.|++.. .+.++||||+||+|||+++++++..+...+. .+++|||||.+++.||.+|
T Consensus 151 ~~~LrpyQ~eav~~~l~~-------~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----~~rvLIVvP~sLl~Qw~~E 218 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRR-------HAPRVLLADEVGLGKTIEAGMILHQQLLSGA-----AERVLIIVPETLQHQWLVE 218 (968)
T ss_dssp SSCCCHHHHHHHHHHHHS-------SSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-----CCCEEEECCTTTHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHh-------cCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-----CCeEEEEeCHHHHHHHHHH
Confidence 356999999999999763 3578999999999999999999998887664 3569999999999999999
Q ss_pred HHHHhCCCCeeEeecCCcchhhh--hhhcCCCCEEEEeHHHHHHHH---HhhhccCceEEEEcCcccccCcccH---HHH
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAED--YVYSRVSPVLIISYEMLIRAY---QTIVDTEFDLLICDEGHRLKNGKSK---LYE 522 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~vvI~ty~~l~~~~---~~l~~~~~~~vIlDEaH~~kn~~s~---~~~ 522 (680)
|.++++ ..+.++++........ ......++|+|+||+.+.+.. ..+....|++||+||||+++|..+. .++
T Consensus 219 ~~~~f~-l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 219 MLRRFN-LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp HHHHSC-CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred HHHHhC-CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHH
Confidence 988884 5666666543222111 122245789999999997642 3456678999999999999987654 477
Q ss_pred HHHhc--ccceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhh---------ccCCCCChHH-------
Q psy12466 523 LMTGL--NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPIL---------ESRSPNSTEA------- 584 (680)
Q Consensus 523 ~l~~l--~~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~---------~~~~~~~~~~------- 584 (680)
++..+ +++++|+|||||++|++.|+|++++|+.|+.+++...|...+..... .+........
T Consensus 298 ~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l 377 (968)
T 3dmq_A 298 AIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMI 377 (968)
T ss_dssp HHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTT
T ss_pred HHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 88877 67889999999999999999999999999999999999877543110 0000000000
Q ss_pred ---------------HHHhhhhHHHHHHHHh-----ccceeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHH
Q psy12466 585 ---------------QKSLGELRSSQLAKRT-----AGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRC 639 (680)
Q Consensus 585 ---------------~~~~~~~~~~~L~~~l-----~~f~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l 639 (680)
...........+..++ ...++|+++..+. .+|.+....+.+++++.++.+|+..
T Consensus 378 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~ 451 (968)
T 3dmq_A 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVS 451 (968)
T ss_dssp CTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHH
T ss_pred cchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHH
Confidence 0000011122333333 3467777777764 7999999999999999999999753
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.84 E-value=5.1e-20 Score=203.48 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=128.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+|+|||.+++.++++ +++||+++||+|||+++++++....... .+++|||||. +|+.||.++
T Consensus 8 ~~l~~~Q~~~i~~~~~----------~~~ll~~~tG~GKT~~~~~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~ 71 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----------TNCLIVLPTGLGKTLIAMMIAEYRLTKY------GGKVLMLAPTKPLVLQHAES 71 (494)
T ss_dssp HCCCHHHHHHHHHGGG----------SCEEEECCTTSCHHHHHHHHHHHHHHHS------CSCEEEECSSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh----------CCEEEEcCCCCCHHHHHHHHHHHHHhcC------CCeEEEEECCHHHHHHHHHH
Confidence 4699999999999853 1899999999999999999887766521 2469999997 899999999
Q ss_pred HHHHh--CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH--hhhccCceEEEEcCcccccCcccHHH--HHH
Q psy12466 451 FKKWL--GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICDEGHRLKNGKSKLY--ELM 524 (680)
Q Consensus 451 ~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~--~l~~~~~~~vIlDEaH~~kn~~s~~~--~~l 524 (680)
+.+|+ +...+..+++........ ......+|+|+||+.+..... .+...+|++||+||||++++..+... +.+
T Consensus 72 ~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~ 150 (494)
T 1wp9_A 72 FRRLFNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150 (494)
T ss_dssp HHHHBCSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHHhCcchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHH
Confidence 99998 445777777765543221 112357899999999988665 34456799999999999986432221 112
Q ss_pred H-hcccceEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy12466 525 T-GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 525 ~-~l~~~~rllLTgTP~~n~~~el~sll~fl~p~~ 558 (680)
. .....++++|||||. ++..+++.++.++....
T Consensus 151 ~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~ 184 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEH 184 (494)
T ss_dssp HHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCE
T ss_pred HhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChhe
Confidence 1 225678999999999 77888888888886553
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.78 E-value=1e-18 Score=194.68 Aligned_cols=194 Identities=19% Similarity=0.223 Sum_probs=148.7
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...|+|||.+++.++++ +++++|+++||+|||++++.++... + +++|||||. +|+.||.+
T Consensus 91 ~~~l~~~Q~~ai~~i~~---------~~~~ll~~~TGsGKT~~~l~~i~~~---~-------~~~Lvl~P~~~L~~Q~~~ 151 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV---------DKRGCIVLPTGSGKTHVAMAAINEL---S-------TPTLIVVPTLALAEQWKE 151 (472)
T ss_dssp CCCBCHHHHHHHHHHTT---------TTEEEEECCTTSCHHHHHHHHHHHH---C-------SCEEEEESSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh---------cCCEEEEeCCCCCHHHHHHHHHHHc---C-------CCEEEEECCHHHHHHHHH
Confidence 35799999999998753 2569999999999999998888765 1 259999998 89999999
Q ss_pred HHHHHhCCCC-eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcc
Q psy12466 450 EFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528 (680)
Q Consensus 450 E~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~ 528 (680)
+|.+| + .. +.++++.... ..+|+|+||+.+......+. .+|++||+||||++.+.... +.+..+.
T Consensus 152 ~~~~~-~-~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~ 217 (472)
T 2fwr_A 152 RLGIF-G-EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSI 217 (472)
T ss_dssp HGGGG-C-GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCC
T ss_pred HHHhC-C-CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcC
Confidence 99994 4 44 7776665432 46899999999987666543 46999999999999876544 3566668
Q ss_pred cceEEEEeCCCCCCCHHHHHHHHhhhCCCCCCCHHHHHHHhhhhhhccCCCCChHHHHHhhhhHHHHHHHHhccceeeec
Q psy12466 529 IRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608 (680)
Q Consensus 529 ~~~rllLTgTP~~n~~~el~sll~fl~p~~l~~~~~F~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~l~~f~lRrt 608 (680)
+.++++|||||.+++-.+ ..|..++.+.+.++.
T Consensus 218 ~~~~l~lSATp~~~~~~~-----------------------------------------------~~l~~~~~~~~~~~~ 250 (472)
T 2fwr_A 218 APFRLGLTATFEREDGRH-----------------------------------------------EILKEVVGGKVFELF 250 (472)
T ss_dssp CSEEEEEESCCCCTTSGG-----------------------------------------------GSHHHHTCCEEEECC
T ss_pred CCeEEEEecCccCCCCHH-----------------------------------------------HHHHHHhCCeEeecC
Confidence 889999999999754111 124455667777777
Q ss_pred hhHHhh-cCCCcEEEEEEecCCHHHHHHHHHHHHHHH
Q psy12466 609 SDVQAS-LLNSKRETLLVCRATPLQQSLYLRCVEYWD 644 (680)
Q Consensus 609 k~~v~~-~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~ 644 (680)
..++.. .+++.....+.+++++.++..|+.+.....
T Consensus 251 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (472)
T 2fwr_A 251 PDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYK 287 (472)
T ss_dssp HHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHH
T ss_pred HHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence 666643 377778888999999999999987765543
No 7
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.78 E-value=8.8e-19 Score=182.15 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=120.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+|+|||.+++.+++.. ++++|+++||+|||+++++++......+. +++|||||. .|+.||.++
T Consensus 112 ~~l~~~Q~~ai~~~l~~---------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------~~~lil~Pt~~L~~q~~~~ 176 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN---------RRRILNLPTSAGRSLIQALLARYYLENYE------GKILIIVPTTALTTQMADD 176 (282)
T ss_dssp CCCCHHHHHHHHHHHHH---------SEEEECCCTTSCHHHHHHHHHHHHHHHCS------SEEEEECSSHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhc---------CCeEEEcCCCCCcHHHHHHHHHHHHHcCC------CeEEEEECCHHHHHHHHHH
Confidence 36999999999988752 56899999999999999888776655432 369999997 788999999
Q ss_pred HHHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-
Q psy12466 451 FKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL- 527 (680)
Q Consensus 451 ~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l- 527 (680)
+.+|.... .+..+.+...... ......+|+|+||+.+.+.... .-..+++||+||||++.+. .....+..+
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~vIiDEaH~~~~~--~~~~il~~~~ 250 (282)
T 1rif_A 177 FVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLN 250 (282)
T ss_dssp HHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHTTTCT
T ss_pred HHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhHHH-HHhhCCEEEEECCccCCcc--cHHHHHHHhh
Confidence 99996542 3333333322211 2224678999999988654332 2246899999999999753 444455666
Q ss_pred ccceEEEEeCCCCCCCHHHHHHHHhhhCC
Q psy12466 528 NIRKRILLSGTPLQNDLQEFFYLNDFANP 556 (680)
Q Consensus 528 ~~~~rllLTgTP~~n~~~el~sll~fl~p 556 (680)
...++++|||||. |...+++.++.+++|
T Consensus 251 ~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 251 NCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp TCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred cCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 6788999999996 445788888888765
No 8
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.70 E-value=6e-17 Score=182.18 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=122.0
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+|+|||.+++.++++. .+++|+++||+|||.+++.++......+. +++|||||. .|..||.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~---------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------~~vlvl~P~~~L~~Q~~~ 175 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN---------RRRILNLPTSAGRSLIQALLARYYLENYE------GKILIIVPTTALTTQMAD 175 (510)
T ss_dssp EECCCHHHHHHHHHHHHH---------SEEEEECCSTTTHHHHHHHHHHHHHHHCS------SEEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHHhCCC------CeEEEEECcHHHHHHHHH
Confidence 347999999999998752 67999999999999999887776665432 379999997 78899999
Q ss_pred HHHHH--hCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc
Q psy12466 450 EFKKW--LGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL 527 (680)
Q Consensus 450 E~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l 527 (680)
+|.+| ++...+..+.+....... .....+|+|+||+.+.+... ..-..|++||+||||++.+ ....+.+..+
T Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~~~-~~~~~~~liIiDE~H~~~~--~~~~~il~~~ 249 (510)
T 2oca_A 176 DFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPK-EWFSQFGMMMNDECHLATG--KSISSIISGL 249 (510)
T ss_dssp HHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTSCG-GGGGGEEEEEEETGGGCCH--HHHHHHGGGC
T ss_pred HHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhchh-hhhhcCCEEEEECCcCCCc--ccHHHHHHhc
Confidence 99998 444456655554433222 23568999999998765422 2224689999999999976 2334444666
Q ss_pred -ccceEEEEeCCCCCCCHHHHHHHHhhhCCCC
Q psy12466 528 -NIRKRILLSGTPLQNDLQEFFYLNDFANPGV 558 (680)
Q Consensus 528 -~~~~rllLTgTP~~n~~~el~sll~fl~p~~ 558 (680)
...++++||||| .+...+++++..+.++..
T Consensus 250 ~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~ 280 (510)
T 2oca_A 250 NNCMFKFGLSGSL-RDGKANIMQYVGMFGEIF 280 (510)
T ss_dssp TTCCEEEEEESCG-GGCSSCHHHHHHHHCSEE
T ss_pred ccCcEEEEEEeCC-CCCcccHHHhHHhhCCeE
Confidence 667899999999 555566677766665543
No 9
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.70 E-value=1.2e-16 Score=161.91 Aligned_cols=142 Identities=22% Similarity=0.263 Sum_probs=107.3
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...|+|||.+++..+++ +..+++++++|+|||.++++++... + +++|||||. .++.||.+
T Consensus 91 ~~~l~~~Q~~ai~~~~~---------~~~~ll~~~tG~GKT~~a~~~~~~~---~-------~~~liv~P~~~L~~q~~~ 151 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV---------DKRGCIVLPTGSGKTHVAMAAINEL---S-------TPTLIVVPTLALAEQWKE 151 (237)
T ss_dssp CCCCCHHHHHHHHHHTT---------TSEEEEEESSSTTHHHHHHHHHHHS---C-------SCEEEEESSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh---------CCCEEEEeCCCCCHHHHHHHHHHHc---C-------CCEEEEeCCHHHHHHHHH
Confidence 45799999999987643 2459999999999999998887653 1 359999998 88899999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~ 529 (680)
++.+ ++...+..+.+... ...+|+|+||+.+......+. ..|++||+||||++.+.. ..+.+..+..
T Consensus 152 ~~~~-~~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~ 218 (237)
T 2fz4_A 152 RLGI-FGEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIA 218 (237)
T ss_dssp HHGG-GCGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCC
T ss_pred HHHh-CCCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccC
Confidence 9999 44322666655442 246899999999987666543 469999999999997643 3345566688
Q ss_pred ceEEEEeCCCCCCCH
Q psy12466 530 RKRILLSGTPLQNDL 544 (680)
Q Consensus 530 ~~rllLTgTP~~n~~ 544 (680)
.++++|||||.+++-
T Consensus 219 ~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 219 PFRLGLTATFEREDG 233 (237)
T ss_dssp SEEEEEEESCC----
T ss_pred CEEEEEecCCCCCCC
Confidence 899999999998754
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.69 E-value=1.7e-16 Score=179.35 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=117.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+|+|||.+++.++++ ++++|+++++|+|||++++..+.......+. ...+++|||||. .|+.||.+++
T Consensus 4 ~~~~~Q~~~i~~~~~---------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~ 72 (555)
T 3tbk_A 4 KPRNYQLELALPAKK---------GKNTIICAPTGCGKTFVSLLICEHHLKKFPC--GQKGKVVFFANQIPVYEQQATVF 72 (555)
T ss_dssp CCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--SCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhC---------CCCEEEEeCCCChHHHHHHHHHHHHHHhccc--CCCCEEEEEeCCHHHHHHHHHHH
Confidence 589999999998853 3689999999999999988887766655431 113469999998 8999999999
Q ss_pred HHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--h-hccCceEEEEcCcccccCcccHHHHHHHh
Q psy12466 452 KKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEGHRLKNGKSKLYELMTG 526 (680)
Q Consensus 452 ~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l-~~~~~~~vIlDEaH~~kn~~s~~~~~l~~ 526 (680)
.++++ ..++..+++...............+|+|+|++.+...... + .-..|++||+||||++.+... ....+..
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~ 151 (555)
T 3tbk_A 73 SRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFR 151 (555)
T ss_dssp HHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHH
T ss_pred HHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHH
Confidence 99986 5567777766543332222223578999999999876654 2 234689999999999987653 2222222
Q ss_pred c----------ccceEEEEeCCCCCCCH
Q psy12466 527 L----------NIRKRILLSGTPLQNDL 544 (680)
Q Consensus 527 l----------~~~~rllLTgTP~~n~~ 544 (680)
+ ...++++|||||..++.
T Consensus 152 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~ 179 (555)
T 3tbk_A 152 YLDHKLGESRDPLPQVVGLTASVGVGDA 179 (555)
T ss_dssp HHHHHTSSCCSCCCEEEEEESCCCCTTC
T ss_pred HHHhhhccccCCCCeEEEEecCcccCcc
Confidence 2 22478999999998873
No 11
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.67 E-value=2.9e-16 Score=177.73 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=114.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.+|+|||.+++.+++. +.++|+++++|+|||++++..+.......+.+ ...++|||||. .|+.||.++
T Consensus 6 ~~~~~~Q~~~i~~~~~---------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~ 74 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN---------GKNALICAPTGSGKTFVSILICEHHFQNMPAG--RKAKVVFLATKVPVYEQQKNV 74 (556)
T ss_dssp --CCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSS--CCCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEcCCCChHHHHHHHHHHHHHHhCccc--CCCeEEEEeCCHHHHHHHHHH
Confidence 3689999999998853 36799999999999999888777666554321 13469999998 899999999
Q ss_pred HHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--h-hccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 451 FKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 451 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l-~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
+.++++ ..++..+++...............+|+|+|++.+...... + .-..|++||+||||++.+... ....+.
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~ 153 (556)
T 4a2p_A 75 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMT 153 (556)
T ss_dssp HHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHH
T ss_pred HHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHH
Confidence 999987 5667777666543332222223578999999999876654 2 234689999999999987654 222222
Q ss_pred hc---------ccceEEEEeCCCCCCCH
Q psy12466 526 GL---------NIRKRILLSGTPLQNDL 544 (680)
Q Consensus 526 ~l---------~~~~rllLTgTP~~n~~ 544 (680)
.+ ...++++|||||..++.
T Consensus 154 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~ 181 (556)
T 4a2p_A 154 RYLEQKFNSASQLPQILGLTASVGVGNA 181 (556)
T ss_dssp HHHHHHHCC---CCEEEEEESCCCCTTC
T ss_pred HHHHhhhcccCCCCeEEEEeCCcccCch
Confidence 22 23578999999988764
No 12
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.67 E-value=1.6e-17 Score=192.24 Aligned_cols=109 Identities=29% Similarity=0.454 Sum_probs=87.4
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCC-CCeeEEeecCCcchh----hhcc----cCCCCEEEEehhHHHHHHHhhhcCC
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGL-TRMCPYHVNQKNKAE----DYVY----SRVSPVLIISYEMLIRAYQTIVDTE 261 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~-~~~~~~~~~~~~~~~----~~~~----~~~~~V~itsYe~l~~~~~~l~~~~ 261 (680)
.++++|||||.+++.||.+||.+|++. ..+..++++...... .+.. ...++|+||||++++.....+....
T Consensus 113 ~~~~~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~ 192 (644)
T 1z3i_X 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGK 192 (644)
T ss_dssp SCSCEEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSC
T ss_pred CCCcEEEEecHHHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCC
Confidence 467899999999999999999999974 223333333221111 1111 1247899999999999988898999
Q ss_pred CcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 262 FDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|++||+||||+|||+.++.++++..+.+.+||+|||+.
T Consensus 193 ~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTP 230 (644)
T 1z3i_X 193 VGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTP 230 (644)
T ss_dssp CCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSC
T ss_pred ccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCc
Confidence 99999999999999999999999999999999999864
No 13
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.67 E-value=7.6e-17 Score=184.85 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=104.7
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCC--CCCccceEEEEec-cchHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPY--GMPVIRKVLIVTP-SSLTSNW 447 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~--~~~~~~~~LIV~P-~sll~qW 447 (680)
...|||||.+|+.++++.+. .+.++++|+++||+|||++++.++..+...+.. .....+++||||| ..|+.||
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~----~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~ 251 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVL----QGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDP 251 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHH----TTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC--------
T ss_pred CCCchHHHHHHHHHHHHHHh----cCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHH
Confidence 35799999999999987542 244678999999999999999999888765410 1112457999999 5888999
Q ss_pred H-HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH------hhhccCceEEEEcCcccccCcc-cH
Q psy12466 448 N-DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ------TIVDTEFDLLICDEGHRLKNGK-SK 519 (680)
Q Consensus 448 ~-~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~------~l~~~~~~~vIlDEaH~~kn~~-s~ 519 (680)
. +++..|.+. +..+.+. ......+|+|+||+.+..... .+....|++||+||||++.+.. +.
T Consensus 252 ~~~~~~~~~~~--~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~ 321 (590)
T 3h1t_A 252 KDKTFTPFGDA--RHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSN 321 (590)
T ss_dssp ---CCTTTCSS--EEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHHHhcchh--hhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHH
Confidence 9 788876542 2222111 122457899999999977532 2334569999999999997653 33
Q ss_pred HHHHHHhcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 520 LYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 520 ~~~~l~~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
....+..+...++++|||||..+...+++.++
T Consensus 322 ~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f 353 (590)
T 3h1t_A 322 WREILEYFEPAFQIGMTATPLREDNRDTYRYF 353 (590)
T ss_dssp CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHS
T ss_pred HHHHHHhCCcceEEEeccccccccchhHHHHc
Confidence 34455566778899999999999888877665
No 14
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.67 E-value=4.4e-16 Score=184.66 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=117.3
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...|+|||.+++.+++. ++++|++++||+|||++++..+.......+.+ ..+++|||||. .|+.||.+
T Consensus 246 ~~~l~~~Q~~~i~~~l~---------~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~--~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN---------GKNALICAPTGSGKTFVSILICEHHFQNMPAG--RKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp --CCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSS--CCCCEEEECSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh---------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccc--CCCeEEEEeCCHHHHHHHHH
Confidence 56899999999998853 36899999999999999888877766654311 13469999996 68999999
Q ss_pred HHHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--h-hccCceEEEEcCcccccCcccHHHHHH
Q psy12466 450 EFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 450 E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l-~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
++.++++ ..++..+++...............+|+|+|++.+...... + .-..|++||+||||++.+... ....+
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~ 393 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLM 393 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHH
T ss_pred HHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHH
Confidence 9999997 6677777776644433223334689999999999876643 1 223579999999999987654 22222
Q ss_pred Hhc---------ccceEEEEeCCCCCCCHHH
Q psy12466 525 TGL---------NIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 525 ~~l---------~~~~rllLTgTP~~n~~~e 546 (680)
..+ ...++++|||||.+++..+
T Consensus 394 ~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~ 424 (797)
T 4a2q_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKN 424 (797)
T ss_dssp HHHHHHHHTTCCCCCEEEEEESCCCCTTCCS
T ss_pred HHHHHHhhccCCCCCeEEEEcCCcccccccc
Confidence 222 2256899999998865433
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.66 E-value=6.4e-16 Score=180.41 Aligned_cols=172 Identities=17% Similarity=0.148 Sum_probs=121.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|+|||.+++.++++ ++++|++++||+|||++++..+......++.+ ..+++|||+|. .|+.||.++
T Consensus 12 ~~lr~~Q~~~i~~~l~---------g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~--~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK---------GKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp -CCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT--CCCCEEEECSSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHc---------CCCEEEEcCCCchHHHHHHHHHHHHHHhCccC--CCCeEEEEECCHHHHHHHHHH
Confidence 4699999999999863 47899999999999999988877655544321 12469999997 899999999
Q ss_pred HHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--h-hccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 451 FKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 451 ~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l-~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
+.++++ +.++..+.|...............+|+|+|++.+...... + .-..|++||+||||++.+...- ...+.
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~-~~i~~ 159 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY-NMIMF 159 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH-HHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH-HHHHH
Confidence 999987 5666667665543322222223589999999999887653 2 2346899999999999876532 22221
Q ss_pred -hc---------ccceEEEEeCCCCCCC-------HHHHHHHHhhhC
Q psy12466 526 -GL---------NIRKRILLSGTPLQND-------LQEFFYLNDFAN 555 (680)
Q Consensus 526 -~l---------~~~~rllLTgTP~~n~-------~~el~sll~fl~ 555 (680)
.+ ...++++|||||..++ ..+++.++..++
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~ 206 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLD 206 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcC
Confidence 11 3467899999998554 344555554443
No 16
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.8e-17 Score=192.84 Aligned_cols=109 Identities=21% Similarity=0.239 Sum_probs=94.6
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhh------------cccCCCCEEEEehhHHHHHHHhhh
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY------------VYSRVSPVLIISYEMLIRAYQTIV 258 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~V~itsYe~l~~~~~~l~ 258 (680)
..+++|||||.+|+.||.+||.+|+|..++.+++|....+.... .....++|+||||+++.+....+.
T Consensus 285 ~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~ 364 (800)
T 3mwy_W 285 QNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG 364 (800)
T ss_dssp CCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH
T ss_pred CCCCEEEEECchHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHh
Confidence 35679999999999999999999999888888888765432210 123457899999999999999999
Q ss_pred cCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 259 DTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
...|++||+||||++||+.++.++++..+.+.+|++|||+.
T Consensus 365 ~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTP 405 (800)
T 3mwy_W 365 SIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTP 405 (800)
T ss_dssp TSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCC
T ss_pred cCCcceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCc
Confidence 99999999999999999999999999999999999999874
No 17
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.66 E-value=1.5e-15 Score=182.76 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=120.0
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...|+|||.+++.++++ +.++|++++||+|||++++..+.......+.+ ..+++|||||. .|+.||.+
T Consensus 246 ~~~~r~~Q~~ai~~il~---------g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~--~~~~vLvl~Pt~~L~~Q~~~ 314 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN---------GKNALICAPTGSGKTFVSILICEHHFQNMPAG--RKAKVVFLATKVPVYEQQKN 314 (936)
T ss_dssp --CCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSS--CCCCEEEECSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc---------CCCEEEEeCCCchHHHHHHHHHHHHHHhcccc--CCCeEEEEeCCHHHHHHHHH
Confidence 56799999999999853 36899999999999999888776655443211 13469999997 68999999
Q ss_pred HHHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--h-hccCceEEEEcCcccccCcccHHHHHH
Q psy12466 450 EFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 450 E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l-~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
++.++++ ..++..++|...............+|+|+|++.+...... + .-..|++||+||||++.+... ....+
T Consensus 315 ~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~ 393 (936)
T 4a2w_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLM 393 (936)
T ss_dssp HHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHH
T ss_pred HHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHH
Confidence 9999987 5677777776544332222223578999999999876653 1 223589999999999987654 33333
Q ss_pred Hhc---------ccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 525 TGL---------NIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 525 ~~l---------~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
..+ ...++++|||||.+++..++...++
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~ 430 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIE 430 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHH
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHH
Confidence 222 1257899999999887766554443
No 18
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.63 E-value=1.4e-16 Score=178.75 Aligned_cols=103 Identities=19% Similarity=0.369 Sum_probs=88.3
Q ss_pred CCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 191 YILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 191 ~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
..+++|||||.+|+.||.+||++|+|..++.++++.... .....++|+|+||+++.+... +....|++||+|||
T Consensus 85 ~~~~~LIv~P~~l~~qw~~e~~~~~~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEa 158 (500)
T 1z63_A 85 ELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEA 158 (500)
T ss_dssp CCSSEEEEECSTTHHHHHHHHHHHCTTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETG
T ss_pred CCCCEEEEccHHHHHHHHHHHHHHCCCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCc
Confidence 357899999999999999999999988888777765422 122457899999999977655 67789999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 271 SLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
|++||+.++.++++..+.+.+|++|||+.
T Consensus 159 H~~kn~~~~~~~~l~~l~~~~~l~LTaTP 187 (500)
T 1z63_A 159 QNIKNPQTKIFKAVKELKSKYRIALTGTP 187 (500)
T ss_dssp GGGSCTTSHHHHHHHTSCEEEEEEECSSC
T ss_pred cccCCHhHHHHHHHHhhccCcEEEEecCC
Confidence 99999999999999999999999999864
No 19
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.62 E-value=6.7e-16 Score=180.31 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=119.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHH-HH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNW-ND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW-~~ 449 (680)
-+|+|||.+++.++++ +.++|++++||+|||++++..+..+...+.. ....+++|||||. .|+.|| .+
T Consensus 6 ~~l~~~Q~~~i~~il~---------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~vlvl~P~~~L~~Q~~~~ 75 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE---------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-ASEPGKVIVLVNKVLLVEQLFRK 75 (699)
T ss_dssp -CCCHHHHHHHHHHHS---------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-HTCCCCBCCEESCSHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHh---------CCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-cCCCCeEEEEECCHHHHHHHHHH
Confidence 3599999999999864 4679999999999999998877665443210 0011458999997 688999 99
Q ss_pred HHHHHhCC-CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHH--------hhhccCceEEEEcCcccccCcc---
Q psy12466 450 EFKKWLGL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--------TIVDTEFDLLICDEGHRLKNGK--- 517 (680)
Q Consensus 450 E~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~--------~l~~~~~~~vIlDEaH~~kn~~--- 517 (680)
++.++++. .++..+++...............+|+|+|++.+..... .+....|++||+||||++....
T Consensus 76 ~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~ 155 (699)
T 4gl2_A 76 EFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 155 (699)
T ss_dssp THHHHHTTTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSC
T ss_pred HHHHHcCcCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHH
Confidence 99999987 77888877665443322333568999999999986542 2334579999999999985432
Q ss_pred cHHHHHHHh-c-------------ccceEEEEeCCCCCCC-------HHHHHHHHhhhCC
Q psy12466 518 SKLYELMTG-L-------------NIRKRILLSGTPLQND-------LQEFFYLNDFANP 556 (680)
Q Consensus 518 s~~~~~l~~-l-------------~~~~rllLTgTP~~n~-------~~el~sll~fl~p 556 (680)
......+.. + ....+++|||||..++ ..++..++..+++
T Consensus 156 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 156 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp SHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCC
Confidence 111111211 1 3457899999999863 3445555566665
No 20
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.61 E-value=6.7e-15 Score=144.90 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=114.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+.+ ++.+++..++|+|||++++..+......... .....++||+||. .+..||.+++
T Consensus 23 ~~~~~Q~~~i~~~~~---------~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-~~~~~~~lil~P~~~L~~q~~~~~ 92 (207)
T 2gxq_A 23 TPTPIQAAALPLALE---------GKDLIGQARTGTGKTLAFALPIAERLAPSQE-RGRKPRALVLTPTRELALQVASEL 92 (207)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-TTCCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcC---------CCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCcEEEEECCHHHHHHHHHHH
Confidence 589999999988754 3679999999999999866555444322110 1113469999998 8889999999
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHHHhc
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELMTGL 527 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l~~l 527 (680)
.++++..++..+.+...............+|+|+|++.+...... +.-..+++||+||||++.+. .......+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~ 172 (207)
T 2gxq_A 93 TAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSAT 172 (207)
T ss_dssp HHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhC
Confidence 999988777777766554333222334689999999998776543 22346899999999987443 23333344444
Q ss_pred c-cceEEEEeCCCCCCCHHHH
Q psy12466 528 N-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 528 ~-~~~rllLTgTP~~n~~~el 547 (680)
. ....+++|||+- +...++
T Consensus 173 ~~~~~~i~~SAT~~-~~~~~~ 192 (207)
T 2gxq_A 173 PPSRQTLLFSATLP-SWAKRL 192 (207)
T ss_dssp CTTSEEEEECSSCC-HHHHHH
T ss_pred CccCeEEEEEEecC-HHHHHH
Confidence 3 456799999984 334444
No 21
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.60 E-value=3.7e-15 Score=147.33 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=90.9
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHH-HH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSN-WN 448 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~q-W~ 448 (680)
...|+|||.+++..+++ +.++++..++|+|||++++..+......... .....++|||||. .++.| |.
T Consensus 31 ~~~l~~~Q~~~i~~~~~---------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~~lil~p~~~L~~q~~~ 100 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE---------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-ASEPGKVIVLVNKVLLVEQLFR 100 (216)
T ss_dssp CCCCCHHHHHHHHHHHT---------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-TTCCCCEEEEESSHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhc---------CCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-ccCCCcEEEEECHHHHHHHHHH
Confidence 34699999999998753 3679999999999999998877655432110 0012469999998 67788 99
Q ss_pred HHHHHHhCC-CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--------hhccCceEEEEcCcccccC
Q psy12466 449 DEFKKWLGL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--------IVDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 449 ~E~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--------l~~~~~~~vIlDEaH~~kn 515 (680)
+++.+|.+. ..+..+.+...............+|+|+||+.+...... +.-..+++||+||||++..
T Consensus 101 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 101 KEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HTHHHHHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred HHHHHHhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 999999864 455555554433221111123578999999999876654 2235789999999999854
No 22
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.56 E-value=3.8e-14 Score=142.81 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=110.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|||.+++..+++ ++.+++..++|+|||++++..+...............++|||||. .+..||.++
T Consensus 46 ~~~~~~Q~~~i~~~~~---------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 116 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ---------GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEV 116 (236)
T ss_dssp CBCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHH
Confidence 3589999999988753 367999999999999987654443322211111112469999998 888999999
Q ss_pred HHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCc--ccHHHHH
Q psy12466 451 FKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNG--KSKLYEL 523 (680)
Q Consensus 451 ~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~--~s~~~~~ 523 (680)
+.++... ..+..+.+........ ......+|+|+|++.+....... .-..+++||+||||++.+. .......
T Consensus 117 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 195 (236)
T 2pl3_A 117 LRKVGKNHDFSAGLIIGGKDLKHEA-ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAV 195 (236)
T ss_dssp HHHHTTTSSCCEEEECCC--CHHHH-HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHH
T ss_pred HHHHhCCCCeeEEEEECCCCHHHHH-HhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHH
Confidence 9999865 4555555544332221 12246899999999997765442 2346899999999988543 3344444
Q ss_pred HHhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 524 MTGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP~~n~~~el 547 (680)
+..+. ...++++|||+- +.+.++
T Consensus 196 ~~~~~~~~~~l~~SAT~~-~~~~~~ 219 (236)
T 2pl3_A 196 IENLPKKRQTLLFSATQT-KSVKDL 219 (236)
T ss_dssp HHTSCTTSEEEEEESSCC-HHHHHH
T ss_pred HHhCCCCCeEEEEEeeCC-HHHHHH
Confidence 55554 445799999974 334443
No 23
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.56 E-value=3.5e-14 Score=141.37 Aligned_cols=161 Identities=11% Similarity=0.125 Sum_probs=110.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+++ ++.+++..++|+|||+.++..+........ ...++|||||. .+..||.+++
T Consensus 36 ~~~~~Q~~~i~~~~~---------~~~~li~~~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~ 102 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL---------GMDVLCQAKSGMGKTAVFVLATLQQLEPVT----GQVSVLVMCHTRELAFQISKEY 102 (220)
T ss_dssp CCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHCCCCT----TCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCCchhhhhhHHHHHhhhccC----CCEEEEEEeCCHHHHHHHHHHH
Confidence 489999999988754 367999999999999988766655443321 12369999997 8889999999
Q ss_pred HHHhC---CCCeeEeecCCcchhh-hhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc-c--cHHHH
Q psy12466 452 KKWLG---LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG-K--SKLYE 522 (680)
Q Consensus 452 ~~~~~---~~~v~~~~~~~~~~~~-~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~-~--s~~~~ 522 (680)
.++.. ..++..+.+....... ........+|+|+|++.+...... +.-..++++|+||||++... . .....
T Consensus 103 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~ 182 (220)
T 1t6n_A 103 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 182 (220)
T ss_dssp HHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHH
T ss_pred HHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHH
Confidence 99874 5566666665443222 222234569999999998765543 22346899999999998542 1 22222
Q ss_pred HHHhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 523 LMTGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 523 ~l~~l~-~~~rllLTgTP~~n~~~el 547 (680)
.+..+. ...++++||||-.+ ..++
T Consensus 183 i~~~~~~~~~~i~~SAT~~~~-~~~~ 207 (220)
T 1t6n_A 183 IFRMTPHEKQVMMFSATLSKE-IRPV 207 (220)
T ss_dssp HHHTSCSSSEEEEEESCCCTT-THHH
T ss_pred HHHhCCCcCeEEEEEeecCHH-HHHH
Confidence 333333 45779999999543 4444
No 24
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.55 E-value=5.7e-14 Score=139.94 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=108.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+++ ++.+++..++|+|||++++..+........ ...++|||||. .+..||.+++
T Consensus 26 ~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~ 92 (219)
T 1q0u_A 26 KPTEIQERIIPGALR---------GESMVGQSQTGTGKTHAYLLPIMEKIKPER----AEVQAVITAPTRELATQIYHET 92 (219)
T ss_dssp SCCHHHHHHHHHHHH---------TCCEEEECCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHHhCc----CCceEEEEcCcHHHHHHHHHHH
Confidence 489999999998865 267899999999999986554444332211 12369999997 7889999999
Q ss_pred HHHhCC------CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHH
Q psy12466 452 KKWLGL------TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLY 521 (680)
Q Consensus 452 ~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~ 521 (680)
.++... ..+..+.+...............+|+|+|++.+...... +.-..+++||+||||++.+.. ....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~ 172 (219)
T 1q0u_A 93 LKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVD 172 (219)
T ss_dssp HHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHH
T ss_pred HHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHH
Confidence 998753 344444444332222222224678999999999765543 222468899999999985432 3344
Q ss_pred HHHHhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 522 ELMTGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 522 ~~l~~l~-~~~rllLTgTP~~n~~~el 547 (680)
..+..+. ...++++|||+ .+.+.++
T Consensus 173 ~i~~~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 173 QIAARMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp HHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred HHHHhCCcccEEEEEecCC-CHHHHHH
Confidence 4445553 45689999997 4445444
No 25
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.54 E-value=8.2e-14 Score=137.04 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=107.5
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+++ ++++++..++|+|||+.++..+........ ...++|||||. .+..||.+++
T Consensus 25 ~~~~~Q~~~i~~~~~---------~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~ 91 (206)
T 1vec_A 25 KPSPIQEESIPIALS---------GRDILARAKNGTGKSGAYLIPLLERLDLKK----DNIQAMVIVPTRELALQVSQIC 91 (206)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCSSSTTHHHHHHHHHHHCCTTS----CSCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcc---------CCCEEEECCCCCchHHHHHHHHHHHhcccC----CCeeEEEEeCcHHHHHHHHHHH
Confidence 589999999988753 367999999999999877654444332211 12369999997 7889999999
Q ss_pred HHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 452 KKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 452 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
.++.. ...+..+.+...............+|+|+|++.+...... +.-.+++++|+||||++.... ......+
T Consensus 92 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~ 171 (206)
T 1vec_A 92 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDII 171 (206)
T ss_dssp HHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred HHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHH
Confidence 99874 4456666655443333233345688999999998765543 122368999999999875532 2223333
Q ss_pred Hhcc-cceEEEEeCCCC
Q psy12466 525 TGLN-IRKRILLSGTPL 540 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~ 540 (680)
..+. ...++++|||+-
T Consensus 172 ~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 172 LTLPKNRQILLYSATFP 188 (206)
T ss_dssp HHSCTTCEEEEEESCCC
T ss_pred HhCCccceEEEEEeeCC
Confidence 4443 567899999983
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.53 E-value=7e-14 Score=149.11 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=109.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|||.+++..+++ ++.++++..++|+|||++++..+.......+ ..++|||||. .+..||.+++
T Consensus 28 ~~~~~Q~~~i~~~~~--------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~-----~~~~lil~P~~~L~~q~~~~~ 94 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN--------DEYNIVAQARTGSGKTASFAIPLIELVNENN-----GIEAIILTPTRELAIQVADEI 94 (367)
T ss_dssp SCCHHHHHHHHHHHH--------TCSEEEEECCSSSSHHHHHHHHHHHHSCSSS-----SCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC--------CCCCEEEECCCCChHHHHHHHHHHHHhcccC-----CCcEEEEcCCHHHHHHHHHHH
Confidence 589999999998865 2367899999999999998877665544321 2469999997 7889999999
Q ss_pred HHHhCCCC--eeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHHH
Q psy12466 452 KKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELMT 525 (680)
Q Consensus 452 ~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l~ 525 (680)
.++++... +....+...... ........+|+|+|++.+...... +.-.++++||+||||.+.+.. ......+.
T Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 173 (367)
T 1hv8_A 95 ESLKGNKNLKIAKIYGGKAIYP-QIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILN 173 (367)
T ss_dssp HHHHCSSCCCEEEECTTSCHHH-HHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHH
T ss_pred HHHhCCCCceEEEEECCcchHH-HHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHH
Confidence 99987543 443443332221 112223689999999999876543 223468999999999986644 22233333
Q ss_pred hc-ccceEEEEeCCCCCC
Q psy12466 526 GL-NIRKRILLSGTPLQN 542 (680)
Q Consensus 526 ~l-~~~~rllLTgTP~~n 542 (680)
.+ ...+.+++||||...
T Consensus 174 ~~~~~~~~i~~SAT~~~~ 191 (367)
T 1hv8_A 174 ACNKDKRILLFSATMPRE 191 (367)
T ss_dssp TSCSSCEEEEECSSCCHH
T ss_pred hCCCCceEEEEeeccCHH
Confidence 33 456779999999653
No 27
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.52 E-value=6.9e-14 Score=168.02 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=111.5
Q ss_pred cccCcccHHHHHHHHHhhhhhc-----cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLA-----SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTS 445 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~-----~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~ 445 (680)
..+||||.+|+..+++++.... ...+++|++.+.+|+|||++++.++..+...+ ...++|||||. .|..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~-----~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELD-----FIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCT-----TCCEEEEEECGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeCcHHHHH
Confidence 4699999999999988643211 11246899999999999999977764443221 23579999995 7889
Q ss_pred HHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh----hccCceEEEEcCcccccCcccHHH
Q psy12466 446 NWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDLLICDEGHRLKNGKSKLY 521 (680)
Q Consensus 446 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l----~~~~~~~vIlDEaH~~kn~~s~~~ 521 (680)
||.++|.+|.+.. +..+...............+|+|+|++++....... .-..+++||+||||+.... ...
T Consensus 345 Q~~~~f~~f~~~~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~ 419 (1038)
T 2w00_A 345 QTMKEYQRFSPDS---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQ 419 (1038)
T ss_dssp HHHHHHHTTSTTC---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHH
T ss_pred HHHHHHHHhcccc---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHH
Confidence 9999999987642 122222222222222346889999999998765431 1226899999999997532 233
Q ss_pred HHH-HhcccceEEEEeCCCCCC
Q psy12466 522 ELM-TGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 522 ~~l-~~l~~~~rllLTgTP~~n 542 (680)
+.+ ..+....+++|||||...
T Consensus 420 ~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 420 KNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHCSSEEEEEEESSCCCS
T ss_pred HHHHHhCCcccEEEEeCCcccc
Confidence 444 445667899999999864
No 28
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.52 E-value=1.4e-13 Score=140.24 Aligned_cols=161 Identities=18% Similarity=0.194 Sum_probs=110.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+++ ++.+++..++|+|||++++..+.......+. ..++|||||. .+..||.+++
T Consensus 65 ~~~~~Q~~~i~~i~~---------~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~----~~~~lil~Ptr~L~~q~~~~~ 131 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ---------GRDIIGLAETGSGKTGAFALPILNALLETPQ----RLFALVLTPTRELAFQISEQF 131 (249)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCC----SSCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEEcCCCCCchhHhHHHHHHHHhcCCC----CceEEEEeCCHHHHHHHHHHH
Confidence 689999999988753 3679999999999999866554433322221 2359999997 7889999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCc--ccHHHHHH
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNG--KSKLYELM 524 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~--~s~~~~~l 524 (680)
.++... .++..+.+...............+|+|+|++.+....... .-..+++||+||||++.+. .....+.+
T Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~ 211 (249)
T 3ber_A 132 EALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 211 (249)
T ss_dssp HHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHH
T ss_pred HHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHH
Confidence 998763 4555555544433333333457899999999998765542 2245889999999987543 23334444
Q ss_pred Hhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 525 TGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 525 ~~l~-~~~rllLTgTP~~n~~~el 547 (680)
..+. ...++++|||+- +.+.++
T Consensus 212 ~~~~~~~~~l~~SAT~~-~~v~~~ 234 (249)
T 3ber_A 212 KVIPRDRKTFLFSATMT-KKVQKL 234 (249)
T ss_dssp HSSCSSSEEEEEESSCC-HHHHHH
T ss_pred HhCCCCCeEEEEeccCC-HHHHHH
Confidence 4443 556799999984 334443
No 29
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.51 E-value=1.4e-13 Score=137.26 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=101.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHH-HHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI-ALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~ai-ali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..++|||.+++..+++ ++.+++..++|+|||++.+ .++..+..... ..++|||||. .+..||.+
T Consensus 35 ~~~~~~Q~~~i~~~~~---------~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~-----~~~~lil~Pt~~L~~q~~~ 100 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE---------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVK-----APQALMLAPTRELALQIQK 100 (224)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHCCTTCC-----SCCEEEECSSHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhc---------CCCEEEECCCCCcHHHHHHHHHHHHHhccCC-----CceEEEEECCHHHHHHHHH
Confidence 3589999999988753 3679999999999999854 44443322211 2469999998 78899999
Q ss_pred HHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 450 EFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 450 E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
++.++... ..+..+.+........ ......+|+|+|++.+...... +.-.++++||+||||++.+.+ ......
T Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i 179 (224)
T 1qde_A 101 VVMALAFHMDIKVHACIGGTSFVEDA-EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 179 (224)
T ss_dssp HHHHHTTTSCCCEEEECC-----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcccCceEEEEeCCcchHHHH-hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHH
Confidence 99999764 3444444433222211 1122488999999998765543 222458999999999875432 233334
Q ss_pred HHhc-ccceEEEEeCCCC
Q psy12466 524 MTGL-NIRKRILLSGTPL 540 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~ 540 (680)
+..+ ....++++|||+-
T Consensus 180 ~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 180 FTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp HHHSCTTCEEEEEESSCC
T ss_pred HHhCCccCeEEEEEeecC
Confidence 4444 3456799999984
No 30
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.51 E-value=2.3e-13 Score=138.67 Aligned_cols=166 Identities=16% Similarity=0.180 Sum_probs=110.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCC-----CCCccceEEEEecc-chHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPY-----GMPVIRKVLIVTPS-SLTS 445 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~-----~~~~~~~~LIV~P~-sll~ 445 (680)
..++|||.+++..+++ ++.+++..++|+|||+.++..+......... ......++|||||. .|..
T Consensus 44 ~~~~~~Q~~~i~~i~~---------~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 114 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE---------HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAI 114 (253)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHH
Confidence 3589999999988754 3679999999999999876555443322110 01112469999997 7889
Q ss_pred HHHHHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCc--ccH
Q psy12466 446 NWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNG--KSK 519 (680)
Q Consensus 446 qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~--~s~ 519 (680)
||.+++.++... ..+..+.+...............+|+|+|++.+....... .-..+++||+||||++.+. ...
T Consensus 115 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~ 194 (253)
T 1wrb_A 115 QILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQ 194 (253)
T ss_dssp HHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHH
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHH
Confidence 999999999765 3444455544433332333456799999999997765432 2235789999999997543 233
Q ss_pred HHHHHHhc--c---cceEEEEeCCCCCCCHHHH
Q psy12466 520 LYELMTGL--N---IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 520 ~~~~l~~l--~---~~~rllLTgTP~~n~~~el 547 (680)
....+..+ . ...++++||||- +.+.++
T Consensus 195 ~~~i~~~~~~~~~~~~q~l~~SAT~~-~~~~~~ 226 (253)
T 1wrb_A 195 IRKIIEESNMPSGINRQTLMFSATFP-KEIQKL 226 (253)
T ss_dssp HHHHHHSSCCCCGGGCEEEEEESSCC-HHHHHH
T ss_pred HHHHHhhccCCCCCCcEEEEEEEeCC-HHHHHH
Confidence 34444432 2 345899999973 334444
No 31
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.50 E-value=1.6e-13 Score=147.97 Aligned_cols=157 Identities=10% Similarity=0.110 Sum_probs=109.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|||.+++.++++ +.++++++++|+|||++++..+........ ...++|||||. .|..||.+++
T Consensus 30 ~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~L~~q~~~~~ 96 (391)
T 1xti_A 30 HPSEVQHECIPQAIL---------GMDVLCQAKSGMGKTAVFVLATLQQLEPVT----GQVSVLVMCHTRELAFQISKEY 96 (391)
T ss_dssp SCCHHHHHHHHHHTT---------TCCEEEECSSCSSHHHHHHHHHHHHCCCCT----TCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---------CCcEEEECCCCCcHHHHHHHHHHHhhcccC----CCeeEEEECCCHHHHHHHHHHH
Confidence 489999999988753 367999999999999988766655433221 12369999998 7889999999
Q ss_pred HHHhC---CCCeeEeecCCcchhh-hhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCccc--HHHH-
Q psy12466 452 KKWLG---LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKS--KLYE- 522 (680)
Q Consensus 452 ~~~~~---~~~v~~~~~~~~~~~~-~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s--~~~~- 522 (680)
.++.. ..++..+.+....... ........+|+|+|++.+...... +.-..+++||+||||++.+... ....
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~ 176 (391)
T 1xti_A 97 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQE 176 (391)
T ss_dssp HHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHH
T ss_pred HHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHH
Confidence 99864 5667666665443322 222234579999999999875543 2234789999999999865321 1122
Q ss_pred HHHhc-ccceEEEEeCCCCCC
Q psy12466 523 LMTGL-NIRKRILLSGTPLQN 542 (680)
Q Consensus 523 ~l~~l-~~~~rllLTgTP~~n 542 (680)
.+... ....++++||||-..
T Consensus 177 ~~~~~~~~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 177 IFRMTPHEKQVMMFSATLSKE 197 (391)
T ss_dssp HHHTSCSSSEEEEEESSCCST
T ss_pred HHhhCCCCceEEEEEeeCCHH
Confidence 22222 355689999998654
No 32
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.49 E-value=3.1e-13 Score=135.82 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=106.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.++|||.+++..+.+ ++.+++..++|+|||++.+. ++..+..... ..++|||||. .+..||.++
T Consensus 46 ~~~~~Q~~~i~~~~~---------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~lil~Pt~~L~~q~~~~ 111 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC---------GLDLIVQAKSGTGKTCVFSTIALDSLVLENL-----STQILILAPTREIAVQIHSV 111 (230)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHCCTTSC-----SCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCC-----CceEEEEeCCHHHHHHHHHH
Confidence 489999999988753 36799999999999998544 3333322221 2469999997 888999999
Q ss_pred HHHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc---ccHHHH
Q psy12466 451 FKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG---KSKLYE 522 (680)
Q Consensus 451 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~---~s~~~~ 522 (680)
+.++.. ..++..+.+........ ......+|+|+|++.+...... +.-.++++||+||||++... ......
T Consensus 112 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~ 190 (230)
T 2oxc_A 112 ITAIGIKMEGLECHVFIGGTPLSQDK-TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINW 190 (230)
T ss_dssp HHHHTTTSTTCCEEEECTTSCHHHHH-HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCCCHHHHH-HhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHH
Confidence 999864 45666666654433222 1224689999999999775542 22246889999999998543 233334
Q ss_pred HHHhcc-cceEEEEeCCC
Q psy12466 523 LMTGLN-IRKRILLSGTP 539 (680)
Q Consensus 523 ~l~~l~-~~~rllLTgTP 539 (680)
.+..+. ...++++|||+
T Consensus 191 i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 191 IYSSLPASKQMLAVSATY 208 (230)
T ss_dssp HHHHSCSSCEEEEEESCC
T ss_pred HHHhCCCCCeEEEEEecc
Confidence 445554 45679999996
No 33
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.47 E-value=4.7e-13 Score=145.09 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=107.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|||.+++.++++ ++++++..++|+|||++++..+........ ...++|||||. .|..||.+++
T Consensus 43 ~~~~~Q~~~i~~i~~---------~~~~li~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~ 109 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT---------GRDILARAKNGTGKTAAFVIPTLEKVKPKL----NKIQALIMVPTRELALQTSQVV 109 (400)
T ss_dssp SCCHHHHHHHHHHHH---------TCCEEEECCTTSCHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEECCCCcHHHHHHHHHHHHHHhhcc----CCccEEEEcCCHHHHHHHHHHH
Confidence 589999999999865 256999999999999987766655433221 12369999997 7889999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc-cHHHHHHHh
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK-SKLYELMTG 526 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~-s~~~~~l~~ 526 (680)
.++.+. ..+..+.+...............+|+|+|++.+...... ..-.++++||+||||++.+.. ......+..
T Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~ 189 (400)
T 1s2m_A 110 RTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILS 189 (400)
T ss_dssp HHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHT
T ss_pred HHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHH
Confidence 999864 344444444433322222345679999999998765543 223468999999999886543 111222222
Q ss_pred -c-ccceEEEEeCCCC
Q psy12466 527 -L-NIRKRILLSGTPL 540 (680)
Q Consensus 527 -l-~~~~rllLTgTP~ 540 (680)
+ .....++||||+-
T Consensus 190 ~~~~~~~~i~lSAT~~ 205 (400)
T 1s2m_A 190 FLPPTHQSLLFSATFP 205 (400)
T ss_dssp TSCSSCEEEEEESCCC
T ss_pred hCCcCceEEEEEecCC
Confidence 2 3456799999984
No 34
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.47 E-value=2.6e-13 Score=146.43 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=107.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..|+|||.+++.++++ ++.+++..++|+|||++++..+........ ...++|||||. .+..||.++
T Consensus 42 ~~~~~~Q~~~i~~i~~---------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~L~~q~~~~ 108 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE---------GHDVLAQAQSGTGKTGTFSIAALQRIDTSV----KAPQALMLAPTRELALQIQKV 108 (394)
T ss_dssp CSCCHHHHHHHHHHHH---------TCCEEECCCSSHHHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHhhccC----CCCCEEEEcCCHHHHHHHHHH
Confidence 3689999999999865 267999999999999986554443332221 12469999997 788999999
Q ss_pred HHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHHH
Q psy12466 451 FKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYELM 524 (680)
Q Consensus 451 ~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~l 524 (680)
+.++.+. .++..+.+......... .....+|+|+|++.+...... +...++++||+||||++... .......+
T Consensus 109 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~ 187 (394)
T 1fuu_A 109 VMALAFHMDIKVHACIGGTSFVEDAE-GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 187 (394)
T ss_dssp HHHHTTTSCCCEEEECSSCCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCeeEEEEeCCCchHHHHh-hcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHH
Confidence 9999865 34444554433222111 112578999999998776542 22347899999999997433 23333444
Q ss_pred Hhc-ccceEEEEeCCCCC
Q psy12466 525 TGL-NIRKRILLSGTPLQ 541 (680)
Q Consensus 525 ~~l-~~~~rllLTgTP~~ 541 (680)
..+ ....+++|||||-.
T Consensus 188 ~~~~~~~~~i~~SAT~~~ 205 (394)
T 1fuu_A 188 TLLPPTTQVVLLSATMPN 205 (394)
T ss_dssp HHSCTTCEEEEECSSCCH
T ss_pred HhCCCCceEEEEEEecCH
Confidence 444 34568999999954
No 35
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.46 E-value=4e-13 Score=135.70 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=102.2
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|||.+++..+++ ++.+++..++|+|||++.+..+........ ...++|||||. .+..||.++
T Consensus 51 ~~~~~~Q~~ai~~i~~---------~~~~li~apTGsGKT~~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~ 117 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK---------GYDVIAQAQSGTGKTATFAISILQQLEIEF----KETQALVLAPTRELAQQIQKV 117 (237)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEECCCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCCcHHHHHHHHHHHHHHhcC----CCceEEEEECcHHHHHHHHHH
Confidence 3589999999988753 367999999999999886554444332211 12369999997 788999999
Q ss_pred HHHHhCCC--CeeEeecCCcchhh-hhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccC--cccHHHHH
Q psy12466 451 FKKWLGLT--RMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKN--GKSKLYEL 523 (680)
Q Consensus 451 ~~~~~~~~--~v~~~~~~~~~~~~-~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn--~~s~~~~~ 523 (680)
+.++.... .+....+....... ........+|+|+|++.+...... +.-..+++||+||||++.. ........
T Consensus 118 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i 197 (237)
T 3bor_A 118 ILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEI 197 (237)
T ss_dssp HHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHH
Confidence 99997643 33333333222211 112223478999999998765543 2234589999999998743 33444555
Q ss_pred HHhcc-cceEEEEeCCCC
Q psy12466 524 MTGLN-IRKRILLSGTPL 540 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP~ 540 (680)
+..+. ....+++|||+-
T Consensus 198 ~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 198 FQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp HHHSCTTCEEEEECSSCC
T ss_pred HHhCCCCCeEEEEEEecC
Confidence 55554 446699999984
No 36
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.45 E-value=4.8e-13 Score=145.59 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=107.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|||.+++.++++ ++.+++..++|+|||++++..+........ ...++|||||. .|..||.++
T Consensus 58 ~~~~~~Q~~ai~~i~~---------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~Pt~~L~~q~~~~ 124 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK---------GRDVIAQSQSGTGKTATFSISVLQCLDIQV----RETQALILAPTRELAVQIQKG 124 (410)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHTCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCCCchHHHHHHHHHHHhhcc----CCceEEEEcCcHHHHHHHHHH
Confidence 3589999999998864 367999999999999988766554432211 12469999997 688999999
Q ss_pred HHHHhCCCCe--eEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHH
Q psy12466 451 FKKWLGLTRM--CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELM 524 (680)
Q Consensus 451 ~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l 524 (680)
+.++.....+ ....+...............+|+|+|++.+...... +....+++||+||||++.+.. ......+
T Consensus 125 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~ 204 (410)
T 2j0s_A 125 LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 204 (410)
T ss_dssp HHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred HHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHH
Confidence 9998765433 333443332222222234578999999998765543 233468999999999986544 2223333
Q ss_pred Hhc-ccceEEEEeCCCC
Q psy12466 525 TGL-NIRKRILLSGTPL 540 (680)
Q Consensus 525 ~~l-~~~~rllLTgTP~ 540 (680)
..+ .....+++||||-
T Consensus 205 ~~~~~~~~~i~~SAT~~ 221 (410)
T 2j0s_A 205 RYLPPATQVVLISATLP 221 (410)
T ss_dssp TTSCTTCEEEEEESCCC
T ss_pred HhCccCceEEEEEcCCC
Confidence 333 3557899999984
No 37
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.44 E-value=6.7e-13 Score=139.90 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=104.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|||.+++.++.+ ++.+++..++|+|||++++..+... + .++|||||. .++.||.+++
T Consensus 16 ~l~~~Q~~~i~~i~~---------~~~~lv~~~TGsGKT~~~~~~~~~~---~-------~~~liv~P~~~L~~q~~~~~ 76 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ---------GKNVVVRAKTGSGKTAAYAIPILEL---G-------MKSLVVTPTRELTRQVASHI 76 (337)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHH---T-------CCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEEcCCCCcHHHHHHHHHHhh---c-------CCEEEEeCCHHHHHHHHHHH
Confidence 489999999998853 3689999999999999877665432 2 248999997 7889999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHHH
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELMT 525 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l~ 525 (680)
.++.+. ..+..+.+....... .......+|+|+|++.+...... +.-..|++||+||||++.+.. ......+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~ 155 (337)
T 2z0m_A 77 RDIGRYMDTKVAEVYGGMPYKAQ-INRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILA 155 (337)
T ss_dssp HHHTTTSCCCEEEECTTSCHHHH-HHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhhcCCcEEEEECCcchHHH-HhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHh
Confidence 998754 344445544332221 12223589999999999876543 223468999999999985443 22233334
Q ss_pred hccc-ceEEEEeCCCCC
Q psy12466 526 GLNI-RKRILLSGTPLQ 541 (680)
Q Consensus 526 ~l~~-~~rllLTgTP~~ 541 (680)
.+.. ...+++||||-.
T Consensus 156 ~~~~~~~~~~~SAT~~~ 172 (337)
T 2z0m_A 156 QTSNRKITGLFSATIPE 172 (337)
T ss_dssp HCTTCSEEEEEESCCCH
T ss_pred hCCcccEEEEEeCcCCH
Confidence 4433 445678999954
No 38
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.43 E-value=6.1e-13 Score=144.60 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=107.0
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|||.+++..+++ ++.+++..++|+|||++++..+........ ...++|||||. .|..||.++
T Consensus 61 ~~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~ 127 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK---------GYDVIAQAQSGTGKTATFAISILQQIELDL----KATQALVLAPTRELAQQIQKV 127 (414)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEECCCSCSSSHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHhC---------CCCEEEECCCCCcccHHHHHHHHHHHhhcC----CceeEEEEeChHHHHHHHHHH
Confidence 3689999999988754 356999999999999997666554433221 12469999997 688999999
Q ss_pred HHHHhCCCC--eeEeecCCcchhh-hhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 451 FKKWLGLTR--MCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 451 ~~~~~~~~~--v~~~~~~~~~~~~-~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
+.++..... +....+....... ........+|+|+|++.+...... +....+++||+||||++.+.. ......
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~ 207 (414)
T 3eiq_A 128 VMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 207 (414)
T ss_dssp HHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHH
T ss_pred HHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHH
Confidence 999875433 3333332222221 122225679999999998776544 333458999999999975432 334444
Q ss_pred HHhc-ccceEEEEeCCCC
Q psy12466 524 MTGL-NIRKRILLSGTPL 540 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~ 540 (680)
+..+ .....++|||||-
T Consensus 208 ~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 208 FQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp HTTSCTTCEEEEECSCCC
T ss_pred HHhCCCCCeEEEEEEecC
Confidence 5555 4556799999984
No 39
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.42 E-value=7e-13 Score=144.85 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=112.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+++|+|.+++..+++ +..+++..++|+|||+.++..+......+ .++|||+|. .|+.||.+++
T Consensus 21 ~~~~~Q~~~i~~i~~---------~~~~lv~apTGsGKT~~~l~~~~~~~~~~-------~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQ---------GKSFTMVAPTGVGKTTFGMMTALWLARKG-------KKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp CCCHHHHHHHHHHTT---------TCCEECCSCSSSSHHHHHHHHHHHHHTTT-------CCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEEeCCCCCHHHHHHHHHHHHhcCC-------CEEEEEECCHHHHHHHHHHH
Confidence 578999999988743 36799999999999996555544444222 359999997 7889999999
Q ss_pred HHHhC-CCCeeEeecCCcchh----hhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccC-----------
Q psy12466 452 KKWLG-LTRMCPYHVNQKNKA----EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN----------- 515 (680)
Q Consensus 452 ~~~~~-~~~v~~~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn----------- 515 (680)
.++.+ ..++..+++...... ......+..+|+|+|++.+......+....+++||+||||.+..
T Consensus 85 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 85 QKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp HHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred HHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhh
Confidence 99886 556666666654321 12222345899999999998777666667899999999998632
Q ss_pred --cccH-HHHHHHhc------------ccceEEEEeCCCCCCCHH
Q psy12466 516 --GKSK-LYELMTGL------------NIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 516 --~~s~-~~~~l~~l------------~~~~rllLTgTP~~n~~~ 545 (680)
.... ....+..+ .....+++||||......
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 209 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhH
Confidence 2222 22333333 445679999997776655
No 40
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.41 E-value=2.2e-12 Score=129.12 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=102.5
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCC--CCCCccceEEEEecc-chHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP--YGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~--~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
..++|+|.+++..+++ ++.+++...+|.|||+.++..+........ .......++|||||. .+..||.
T Consensus 41 ~~~~~~Q~~~i~~~~~---------~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 111 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ---------GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVE 111 (228)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHH
Confidence 3689999999988753 367899999999999986554433222110 000113458999997 7889999
Q ss_pred HHHHHHh-CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHH
Q psy12466 449 DEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYEL 523 (680)
Q Consensus 449 ~E~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~ 523 (680)
+++.++. ....+....+...............+|+|+|++.+...... +.-.++++||+||||++.+. .......
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 191 (228)
T 3iuy_A 112 AECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKI 191 (228)
T ss_dssp HHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHH
Confidence 9999985 34455555544433332223344689999999999765432 12235899999999987543 2333444
Q ss_pred HHhcc-cceEEEEeCCC
Q psy12466 524 MTGLN-IRKRILLSGTP 539 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP 539 (680)
+..+. ....+++|||.
T Consensus 192 ~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 192 LLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHSCSSCEEEEEESCC
T ss_pred HHhCCcCCeEEEEEeeC
Confidence 44453 45679999996
No 41
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.40 E-value=1.7e-12 Score=139.82 Aligned_cols=154 Identities=13% Similarity=0.113 Sum_probs=104.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|||.+++..++. ..++++++..++|+|||++++..+........ ...++|||||. .|..||.++
T Consensus 26 ~~~~~~Q~~~i~~~~~-------~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~ 94 (395)
T 3pey_A 26 QKPSKIQERALPLLLH-------NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED----ASPQAICLAPSRELARQTLEV 94 (395)
T ss_dssp CSCCHHHHHHHHHHHC-------SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------CCCCeEEEECCCCCcHHHHHHHHHHHHhccCC----CCccEEEECCCHHHHHHHHHH
Confidence 3589999999988853 23478999999999999988766655433221 12469999997 688999999
Q ss_pred HHHHhCCCCe--eEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCccc--HHHHHH
Q psy12466 451 FKKWLGLTRM--CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKS--KLYELM 524 (680)
Q Consensus 451 ~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~s--~~~~~l 524 (680)
+.++.....+ ....+...... .....+|+|+|++.+...... +.-.++++||+||||++.+... .....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 170 (395)
T 3pey_A 95 VQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170 (395)
T ss_dssp HHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHH
T ss_pred HHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHH
Confidence 9998754333 33332222111 123578999999999765543 2234689999999998854221 222222
Q ss_pred H-hc-ccceEEEEeCCCC
Q psy12466 525 T-GL-NIRKRILLSGTPL 540 (680)
Q Consensus 525 ~-~l-~~~~rllLTgTP~ 540 (680)
. .+ .....+++||||-
T Consensus 171 ~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 171 KRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp HHTSCTTCEEEEEESCCC
T ss_pred HHhCCCCcEEEEEEecCC
Confidence 2 22 3456799999984
No 42
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.40 E-value=2.3e-12 Score=132.27 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=108.2
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHH-HHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIW-TLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~-~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..++|+|.+++..++. ++.+++..++|.|||+.++..+. .+.... .......++|||||. .|..||.+
T Consensus 75 ~~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~~~lil~Pt~~La~q~~~ 144 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE---------GRDLLAAAKTGSGKTLAFLIPAVELIVKLR-FMPRNGTGVLILSPTRELAMQTFG 144 (262)
T ss_dssp CBCCHHHHHHHHHHHH---------TCCCEECCCTTSCHHHHHHHHHHHHHHHTT-CCGGGCCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCcEEEEccCCCCchHHHHHHHHHHHHhcc-ccccCCceEEEEeCCHHHHHHHHH
Confidence 3489999999988764 26789999999999998655443 333311 111112459999997 78899999
Q ss_pred HHHHHhCCC--CeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCc--ccHHHH
Q psy12466 450 EFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNG--KSKLYE 522 (680)
Q Consensus 450 E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~--~s~~~~ 522 (680)
++.++.... .+....+...............+|+|+|++.+....... .-.++++||+||||++-.. ......
T Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~ 224 (262)
T 3ly5_A 145 VLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQ 224 (262)
T ss_dssp HHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHH
Confidence 999988643 334444433332222222234889999999997765442 2245899999999987543 233333
Q ss_pred HHHhcc-cceEEEEeCCCCCCCHHHH
Q psy12466 523 LMTGLN-IRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 523 ~l~~l~-~~~rllLTgTP~~n~~~el 547 (680)
.+..+. ....++||||+- +.+.++
T Consensus 225 i~~~~~~~~q~l~~SAT~~-~~v~~~ 249 (262)
T 3ly5_A 225 IIKLLPTRRQTMLFSATQT-RKVEDL 249 (262)
T ss_dssp HHHHSCSSSEEEEECSSCC-HHHHHH
T ss_pred HHHhCCCCCeEEEEEecCC-HHHHHH
Confidence 444443 456799999984 334443
No 43
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.39 E-value=3.4e-12 Score=129.17 Aligned_cols=155 Identities=21% Similarity=0.190 Sum_probs=101.6
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|||.+++..+++ ++.+++...+|.|||+.++..+......... ...++|||||. .|..||.+++
T Consensus 51 ~~~~~Q~~~i~~~~~---------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~~lil~Pt~~L~~q~~~~~ 118 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH---------GRELLASAPTGSGKTLAFSIPILMQLKQPAN---KGFRALIISPTRELASQIHREL 118 (245)
T ss_dssp SCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHCSCCS---SSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCCcHHHHHHHHHHHHHhhccc---CCceEEEEeCCHHHHHHHHHHH
Confidence 589999999987753 3678999999999999865544333322111 12359999997 7889999999
Q ss_pred HHHhCCCCe--eEeecCCcchh-hhhhhcCCCCEEEEeHHHHHHHHHhh----hccCceEEEEcCcccccCc-----ccH
Q psy12466 452 KKWLGLTRM--CPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDLLICDEGHRLKNG-----KSK 519 (680)
Q Consensus 452 ~~~~~~~~v--~~~~~~~~~~~-~~~~~~~~~~vvI~ty~~l~~~~~~l----~~~~~~~vIlDEaH~~kn~-----~s~ 519 (680)
.+++....+ ....+...... .........+|+|+|++.+....... .-.++++||+||||++... ...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 198 (245)
T 3dkp_A 119 IKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQ 198 (245)
T ss_dssp HHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHH
T ss_pred HHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHH
Confidence 999865433 33332221111 11122346789999999997765432 2235889999999998532 122
Q ss_pred HHHHHHhc--ccceEEEEeCCC
Q psy12466 520 LYELMTGL--NIRKRILLSGTP 539 (680)
Q Consensus 520 ~~~~l~~l--~~~~rllLTgTP 539 (680)
....+..+ .....++||||+
T Consensus 199 ~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 199 LASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHHHCCCTTCEEEEEESSC
T ss_pred HHHHHHhcCCCCcEEEEEeccC
Confidence 22233333 245679999998
No 44
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.37 E-value=8.1e-12 Score=126.39 Aligned_cols=166 Identities=14% Similarity=0.087 Sum_probs=108.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHH-HHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIW-TLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~-~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..++|+|.+++..+++ ++.+++...+|.|||+..+..+. .+............++|||||. .|..||.+
T Consensus 50 ~~~~~~Q~~~i~~~~~---------g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 120 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS---------GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQ 120 (242)
T ss_dssp CSCCHHHHHHHHHHHH---------TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHH
Confidence 3589999999988764 36799999999999998655443 3332211111123469999997 78899999
Q ss_pred HHHHHhC--CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc--ccHHHHH
Q psy12466 450 EFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG--KSKLYEL 523 (680)
Q Consensus 450 E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~--~s~~~~~ 523 (680)
++.++.. ...+..+.+...............+|+|+|++.+...... +.-.++++||+||||++-.. .......
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i 200 (242)
T 3fe2_A 121 VAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 200 (242)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHH
Confidence 9998864 3455555554443333223334579999999999765543 22246889999999987543 2233333
Q ss_pred HHhc-ccceEEEEeCCCCCCCHHHH
Q psy12466 524 MTGL-NIRKRILLSGTPLQNDLQEF 547 (680)
Q Consensus 524 l~~l-~~~~rllLTgTP~~n~~~el 547 (680)
+..+ .....+++|||. .+.+.++
T Consensus 201 ~~~~~~~~q~~~~SAT~-~~~~~~~ 224 (242)
T 3fe2_A 201 VDQIRPDRQTLMWSATW-PKEVRQL 224 (242)
T ss_dssp HTTSCSSCEEEEEESCC-CHHHHHH
T ss_pred HHhCCccceEEEEEeec-CHHHHHH
Confidence 4444 345679999996 3334333
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.33 E-value=8.1e-12 Score=152.73 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=112.0
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-.++|+|.+++..+++.+ .......++++.++|+|||.+++..+......+ +++||+||+ .|..||.+
T Consensus 601 ~~~~t~~Q~~ai~~il~~~---~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-------~~vlvlvPt~~La~Q~~~ 670 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDM---CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-------KQVAVLVPTTLLAQQHYD 670 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHH---HSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-------CEEEEECSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH---hcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CeEEEEechHHHHHHHHH
Confidence 4457999999999987642 112234799999999999999876554444433 369999998 57799999
Q ss_pred HHHHHhCCC--CeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHH
Q psy12466 450 EFKKWLGLT--RMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYEL 523 (680)
Q Consensus 450 E~~~~~~~~--~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~ 523 (680)
+|.++++.. ++..+.+....... .....+..+|+|+|++.+.+ .+.-.++++||+||+|++. ......
T Consensus 671 ~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~---~~~~~~l~lvIiDEaH~~g---~~~~~~ 744 (1151)
T 2eyq_A 671 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS---DVKFKDLGLLIVDEEHRFG---VRHKER 744 (1151)
T ss_dssp HHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS---CCCCSSEEEEEEESGGGSC---HHHHHH
T ss_pred HHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC---CccccccceEEEechHhcC---hHHHHH
Confidence 999988754 44445443332221 12234568999999988753 2334578999999999973 344455
Q ss_pred HHhcc-cceEEEEeCCCCCCCHHH
Q psy12466 524 MTGLN-IRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 524 l~~l~-~~~rllLTgTP~~n~~~e 546 (680)
+..+. ..+.++|||||..+.+..
T Consensus 745 l~~l~~~~~vl~lSATp~p~~l~~ 768 (1151)
T 2eyq_A 745 IKAMRANVDILTLTATPIPRTLNM 768 (1151)
T ss_dssp HHHHHTTSEEEEEESSCCCHHHHH
T ss_pred HHHhcCCCCEEEEcCCCChhhHHH
Confidence 55554 457899999998765443
No 46
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.32 E-value=1.7e-11 Score=135.05 Aligned_cols=160 Identities=17% Similarity=0.181 Sum_probs=109.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..++|+|.+++..++. ++..++..++|+|||+..+. ++..+............++|||||. .|..||.+
T Consensus 77 ~~pt~iQ~~ai~~i~~---------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 147 (434)
T 2db3_A 77 KIPTPIQKCSIPVISS---------GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFN 147 (434)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---------CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHH
Confidence 3588999999988753 47899999999999998655 4444444322111122469999997 78899999
Q ss_pred HHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHH
Q psy12466 450 EFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYEL 523 (680)
Q Consensus 450 E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~ 523 (680)
++.++... .++....+...............+|+|+|++.+...... +.-.++++||+||||++.+.+ ....+.
T Consensus 148 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i 227 (434)
T 2db3_A 148 EARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRI 227 (434)
T ss_dssp HHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred HHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHH
Confidence 99999854 345555554443333333345689999999999776543 223468999999999986543 233333
Q ss_pred HHhc---ccceEEEEeCCCC
Q psy12466 524 MTGL---NIRKRILLSGTPL 540 (680)
Q Consensus 524 l~~l---~~~~rllLTgTP~ 540 (680)
+..+ .....+++|||+-
T Consensus 228 ~~~~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 228 MTHVTMRPEHQTLMFSATFP 247 (434)
T ss_dssp HHCTTSCSSCEEEEEESCCC
T ss_pred HHhcCCCCCceEEEEeccCC
Confidence 3332 3456799999983
No 47
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.32 E-value=8.6e-12 Score=135.30 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=104.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|+|.+++..++. ..++.+++..++|+|||++++..+........ ...++|||||. .|..||.+.
T Consensus 46 ~~~~~~Q~~~i~~~~~-------~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~ 114 (412)
T 3fht_A 46 NRPSKIQENALPLMLA-------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----KYPQCLCLSPTYELALQTGKV 114 (412)
T ss_dssp CSCCHHHHHHHHHHHS-------SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-------CCCCeEEEECCCCchHHHHHHHHHHHHhhhcC----CCCCEEEECCCHHHHHHHHHH
Confidence 3589999999988753 23578999999999999997655544333222 12369999997 677999888
Q ss_pred HHHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccC--cccHHHH
Q psy12466 451 FKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKN--GKSKLYE 522 (680)
Q Consensus 451 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn--~~s~~~~ 522 (680)
+.++.. ...+....+....... .....+|+|+|++.+...... +.-.++++||+||||++.. .......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 191 (412)
T 3fht_A 115 IEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191 (412)
T ss_dssp HHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHH
T ss_pred HHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHH
Confidence 888764 4455544443322211 123568999999999776533 2224689999999998743 2222222
Q ss_pred HH-Hhc-ccceEEEEeCCCCC
Q psy12466 523 LM-TGL-NIRKRILLSGTPLQ 541 (680)
Q Consensus 523 ~l-~~l-~~~~rllLTgTP~~ 541 (680)
.+ ..+ .....+++||||-.
T Consensus 192 ~~~~~~~~~~~~i~~SAT~~~ 212 (412)
T 3fht_A 192 RIQRMLPRNCQMLLFSATFED 212 (412)
T ss_dssp HHHHTSCTTCEEEEEESCCCH
T ss_pred HHHhhCCCCceEEEEEeecCH
Confidence 33 333 34467999999843
No 48
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.31 E-value=1.9e-11 Score=133.05 Aligned_cols=160 Identities=17% Similarity=0.202 Sum_probs=105.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCC-------------CCCccceEEE
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPY-------------GMPVIRKVLI 437 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~-------------~~~~~~~~LI 437 (680)
..++|+|.+++..+.. ++.+++..++|+|||+..+. ++..+...+.. ......++||
T Consensus 36 ~~~~~~Q~~~i~~i~~---------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 106 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE---------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLV 106 (417)
T ss_dssp CSCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEE
T ss_pred CCCCHHHHHHHHHHcc---------CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEE
Confidence 3688999999987643 46799999999999987654 44444332210 0111235999
Q ss_pred Eecc-chHHHHHHHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCccc
Q psy12466 438 VTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHR 512 (680)
Q Consensus 438 V~P~-sll~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~ 512 (680)
|||. .|..||.+++.++... .++..+.+...............+|+|+|++.+...... +.-..+++||+||||+
T Consensus 107 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~ 186 (417)
T 2i4i_A 107 LAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR 186 (417)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHH
T ss_pred ECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhH
Confidence 9997 7889999999998754 445555554433322222334679999999999876543 2234688999999999
Q ss_pred ccCcc-cHHHHHHHh---cc---cceEEEEeCCCC
Q psy12466 513 LKNGK-SKLYELMTG---LN---IRKRILLSGTPL 540 (680)
Q Consensus 513 ~kn~~-s~~~~~l~~---l~---~~~rllLTgTP~ 540 (680)
+.... ......+.. +. ....+++|||+-
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 187 MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 221 (417)
T ss_dssp HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCC
T ss_pred hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCC
Confidence 75432 222223322 11 346799999983
No 49
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.30 E-value=9.9e-12 Score=139.76 Aligned_cols=155 Identities=12% Similarity=0.098 Sum_probs=102.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|+|.+++..+++ ..++.+|+...+|+|||.+++..+......+.. ..++|||||. .|+.||.+++
T Consensus 141 ~p~~~Q~~ai~~i~~-------~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~----~~~vLvl~P~~~L~~Q~~~~~ 209 (508)
T 3fho_A 141 XXXKIQEKALPLLLS-------NPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP----KPQAICLAPSRELARQIMDVV 209 (508)
T ss_dssp ECCCTTSSSHHHHHC-------SSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCC----SCCEEEECSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHc-------CCCCCEEEECCCCccHHHHHHHHHHHHHHhCCC----CceEEEEECcHHHHHHHHHHH
Confidence 589999999988753 135789999999999999876655544333221 2369999997 6889999999
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCc---ccHHHHHHHh
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNG---KSKLYELMTG 526 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~---~s~~~~~l~~ 526 (680)
.++++...+....+........ .....+|+|+|++.+...... +.-..+++||+||||++... .......+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~ 287 (508)
T 3fho_A 210 TEMGKYTEVKTAFGIKDSVPKG--AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHL 287 (508)
T ss_dssp HHHSTTSSCCEEC------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHH
T ss_pred HHhCCccCeeEEEEeCCccccc--ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHh
Confidence 9998765544433322221111 123678999999998765432 22346899999999998542 2222223333
Q ss_pred cc-cceEEEEeCCCC
Q psy12466 527 LN-IRKRILLSGTPL 540 (680)
Q Consensus 527 l~-~~~rllLTgTP~ 540 (680)
+. ....++|||||-
T Consensus 288 ~~~~~~~i~lSAT~~ 302 (508)
T 3fho_A 288 LPRNTQIVLFSATFS 302 (508)
T ss_dssp SCTTCEEEEEESCCS
T ss_pred CCcCCeEEEEeCCCC
Confidence 33 445699999984
No 50
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.30 E-value=6.4e-12 Score=147.19 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=110.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+++|.+++..+.+.+ ......+.++..++|+|||++++..+......+. ++||+||. .|..||.+++
T Consensus 368 ~lt~~Q~~ai~~I~~~l---~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~-------qvlvlaPtr~La~Q~~~~l 437 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDM---ISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF-------QTAFMVPTSILAIQHYRRT 437 (780)
T ss_dssp CCCHHHHHHHHHHHHHH---HSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS-------CEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhc---cccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCC-------eEEEEeCcHHHHHHHHHHH
Confidence 69999999999887642 2233457899999999999998776665554442 48999998 7779999999
Q ss_pred HHHhCC--CCeeEeecCCcchhhh----hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHH
Q psy12466 452 KKWLGL--TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525 (680)
Q Consensus 452 ~~~~~~--~~v~~~~~~~~~~~~~----~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~ 525 (680)
.++++. .++..+++........ ....+..+|+|+|++.+.. .+.-.++++||+||+|++.... . ..+.
T Consensus 438 ~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---~~~~~~l~lVVIDEaHr~g~~q--r-~~l~ 511 (780)
T 1gm5_A 438 VESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE---DVHFKNLGLVIIDEQHRFGVKQ--R-EALM 511 (780)
T ss_dssp HHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH---CCCCSCCCEEEEESCCCC--------CCCC
T ss_pred HHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh---hhhccCCceEEecccchhhHHH--H-HHHH
Confidence 999873 5666666665443221 1234568999999988744 3334578999999999973221 1 1111
Q ss_pred h-cccceEEEEeCCCCCCCHH
Q psy12466 526 G-LNIRKRILLSGTPLQNDLQ 545 (680)
Q Consensus 526 ~-l~~~~rllLTgTP~~n~~~ 545 (680)
. ....+.++|||||+...+.
T Consensus 512 ~~~~~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 512 NKGKMVDTLVMSATPIPRSMA 532 (780)
T ss_dssp SSSSCCCEEEEESSCCCHHHH
T ss_pred HhCCCCCEEEEeCCCCHHHHH
Confidence 1 1356789999999875544
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.29 E-value=2.1e-12 Score=155.65 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=83.5
Q ss_pred CCCCeEEEEECcccHHHHHHHHHHHhCCCCeeEEeecCCcchhh--hcccCCCCEEEEehhHHHHHH---HhhhcCCCcE
Q psy12466 190 SYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED--YVYSRVSPVLIISYEMLIRAY---QTIVDTEFDL 264 (680)
Q Consensus 190 ~~~~~~LIV~P~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~V~itsYe~l~~~~---~~l~~~~~~~ 264 (680)
...+++|||||.+|+.||.+||.+|++ .++.++++........ ......++|+|+||+++.+.. ..+....|++
T Consensus 198 g~~~rvLIVvP~sLl~Qw~~E~~~~f~-l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dl 276 (968)
T 3dmq_A 198 GAAERVLIIVPETLQHQWLVEMLRRFN-LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL 276 (968)
T ss_dssp SSCCCEEEECCTTTHHHHHHHHHHHSC-CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCE
T ss_pred CCCCeEEEEeCHHHHHHHHHHHHHHhC-CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCE
Confidence 345689999999999999999999995 6666665543221111 122245789999999997653 3466788999
Q ss_pred EEEcCCCCCCCCCCCC---CccccCC--CCCCceeccCCC
Q psy12466 265 LICDEKSLLKPPSGNS---PGNDSGI--PSLPRKSDSGIG 299 (680)
Q Consensus 265 vI~DEaH~lKN~~s~~---~~a~~~l--~~~~r~~LTG~~ 299 (680)
||+||||++||..++. ++++..+ .+.++++|||+.
T Consensus 277 VIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATP 316 (968)
T 3dmq_A 277 LVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATP 316 (968)
T ss_dssp EEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSC
T ss_pred EEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCC
Confidence 9999999999998887 6677777 677799999875
No 52
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.28 E-value=6.1e-11 Score=143.02 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=110.7
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-.|+|||.+++..+.. +.+++++.++|+|||+++...+......+ .++||++|. .|..||.+
T Consensus 84 ~f~L~~~Q~eai~~l~~---------g~~vLV~apTGSGKTlva~lai~~~l~~g-------~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR---------GESVLVSAHTSAGKTVVAEYAIAQSLKNK-------QRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH---------TCEEEEECCTTSCHHHHHHHHHHHHHHTT-------CEEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc---------CCCEEEECCCCCChHHHHHHHHHHHhccC-------CeEEEECChHHHHHHHHH
Confidence 34699999999998754 36799999999999998865555444433 369999997 88899999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh--hhccCceEEEEcCcccccCcc--cHHHHHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGK--SKLYELMT 525 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~--l~~~~~~~vIlDEaH~~kn~~--s~~~~~l~ 525 (680)
+|.++++ .+.++.|..... ...+|+|+|++.+...... ..-.++++||+||||++.+.. ......+.
T Consensus 148 ~l~~~~~--~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 148 ELLAEFG--DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp HHHHHHS--CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred HHHHHhC--CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 9999988 566666554322 2578999999998765432 222468999999999997652 22333444
Q ss_pred hc-ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 526 GL-NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 526 ~l-~~~~rllLTgTP~~n~~~el~sll 551 (680)
.+ .....++||||+- | ..++...+
T Consensus 219 ~l~~~~~il~LSATi~-n-~~e~a~~l 243 (1010)
T 2xgj_A 219 LLPDKVRYVFLSATIP-N-AMEFAEWI 243 (1010)
T ss_dssp HSCTTCEEEEEECCCT-T-HHHHHHHH
T ss_pred hcCCCCeEEEEcCCCC-C-HHHHHHHH
Confidence 44 3457799999953 3 45554444
No 53
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=5.1e-11 Score=136.09 Aligned_cols=162 Identities=21% Similarity=0.187 Sum_probs=104.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|+|.+++..++. ..+...|+...+|+|||++.+..+...............++|||||. .|..||.+++
T Consensus 43 ~~~~~Q~~~i~~il~-------~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~ 115 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS-------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 115 (579)
T ss_dssp SCCHHHHHHHHHHHC-------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-------cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHH
Confidence 589999999988752 23567899999999999986655444333322111223469999997 7889999999
Q ss_pred HHHhC------CCCeeEeecCCcchh-hhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCcc--cH
Q psy12466 452 KKWLG------LTRMCPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNGK--SK 519 (680)
Q Consensus 452 ~~~~~------~~~v~~~~~~~~~~~-~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~~--s~ 519 (680)
.+++. ...+....+...... .........+|+|+|++.+....... .-..+++||+||||++.... ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~ 195 (579)
T 3sqw_A 116 KKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDD 195 (579)
T ss_dssp HHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHH
Confidence 99752 233444443332222 12222346899999999997655432 23468999999999986543 22
Q ss_pred HHHHHHhc---c-----cceEEEEeCCCCC
Q psy12466 520 LYELMTGL---N-----IRKRILLSGTPLQ 541 (680)
Q Consensus 520 ~~~~l~~l---~-----~~~rllLTgTP~~ 541 (680)
....+..+ . ....+++|||+-.
T Consensus 196 ~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 196 LETISGILNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp HHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred HHHHHHHhhhhhcccccCceEEEEeccCCh
Confidence 22222222 1 3468999999853
No 54
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.24 E-value=3e-11 Score=137.30 Aligned_cols=163 Identities=21% Similarity=0.184 Sum_probs=104.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|+|.+++..++. ..++..|+...+|+|||++++..+......+........++|||+|. .|..||.++
T Consensus 93 ~~~~~~Q~~~i~~~l~-------~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS-------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp SSCCHHHHHHHHHHHS-------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-------CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHH
Confidence 3589999999988752 23567899999999999986655444333332212223469999997 788999999
Q ss_pred HHHHhC------CCCeeEeecCCcchh-hhhhhcCCCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccCcc--c
Q psy12466 451 FKKWLG------LTRMCPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKNGK--S 518 (680)
Q Consensus 451 ~~~~~~------~~~v~~~~~~~~~~~-~~~~~~~~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn~~--s 518 (680)
+.+++. ...+....+...... .........+|+|+|++.+....... .-..+++||+||||++.... .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~ 245 (563)
T 3i5x_A 166 VKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRD 245 (563)
T ss_dssp HHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHH
T ss_pred HHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHH
Confidence 998753 223343433332221 12222346799999999997655432 22458999999999985542 2
Q ss_pred HHHHHHHhc---c-----cceEEEEeCCCCC
Q psy12466 519 KLYELMTGL---N-----IRKRILLSGTPLQ 541 (680)
Q Consensus 519 ~~~~~l~~l---~-----~~~rllLTgTP~~ 541 (680)
.....+..+ . ....+++|||+-.
T Consensus 246 ~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 276 (563)
T 3i5x_A 246 DLETISGILNEKNSKSADNIKTLLFSATLDD 276 (563)
T ss_dssp HHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred HHHHHHHhhhhccccCccCceEEEEEccCCH
Confidence 222222222 1 3358999999853
No 55
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.18 E-value=7e-11 Score=133.26 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=111.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.++|+|.+++..+++ ++.+++..++|.|||+..+..+. ... +++|||+|. +|+.||.+++
T Consensus 25 ~~r~~Q~~~i~~il~---------g~d~lv~apTGsGKTl~~~lp~l--~~~--------g~~lvi~P~~aL~~q~~~~l 85 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS---------GRDCLVVMPTGGGKSLCYQIPAL--LLN--------GLTVVVSPLISLMKDQVDQL 85 (523)
T ss_dssp SCCTTHHHHHHHHHT---------TCCEEEECSCHHHHHHHHHHHHH--HSS--------SEEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEECCCCcHHHHHHHHHHH--HhC--------CCEEEECChHHHHHHHHHHH
Confidence 589999999998864 36799999999999986543322 221 358999997 8889999999
Q ss_pred HHHhCCCCeeEeecCCcchhh----hhhhcCCCCEEEEeHHHHHH--HHHhhhccCceEEEEcCcccccCcc---cHHHH
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLLICDEGHRLKNGK---SKLYE 522 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~vvI~ty~~l~~--~~~~l~~~~~~~vIlDEaH~~kn~~---s~~~~ 522 (680)
.++ ...+..+++....... .....+..+++++|++.+.. ..+.+...++++||+||||.+...+ ...+.
T Consensus 86 ~~~--gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~ 163 (523)
T 1oyw_A 86 QAN--GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYA 163 (523)
T ss_dssp HHT--TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHH
T ss_pred HHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHH
Confidence 986 3445555554432211 12234568999999999853 2233555789999999999985432 22233
Q ss_pred HH----HhcccceEEEEeCCCCCCCHHHHHHHHhhh
Q psy12466 523 LM----TGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554 (680)
Q Consensus 523 ~l----~~l~~~~rllLTgTP~~n~~~el~sll~fl 554 (680)
.+ ..+....+++|||||......++...+.+-
T Consensus 164 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~ 199 (523)
T 1oyw_A 164 ALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLN 199 (523)
T ss_dssp GGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCC
Confidence 33 233456789999999887777777766543
No 56
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.17 E-value=7.7e-11 Score=131.27 Aligned_cols=156 Identities=11% Similarity=0.083 Sum_probs=101.4
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|+|.+++..++. ..++..|+...+|+|||++.+..+......+. ...++|||+|. .|..||.+.
T Consensus 113 ~~p~~~Q~~ai~~il~-------~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~----~~~~~lil~Pt~~La~Q~~~~ 181 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA-------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN----KYPQCLCLSPTYELALQTGKV 181 (479)
T ss_dssp CSCCHHHHHHHHHHTS-------BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC----CCCcEEEEeChHHHHHHHHHH
Confidence 4578899999988743 23578999999999999986554433322221 12359999997 677999888
Q ss_pred HHHHh---CCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccCc--ccHHHH
Q psy12466 451 FKKWL---GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKNG--KSKLYE 522 (680)
Q Consensus 451 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn~--~s~~~~ 522 (680)
+.++. +...+....+....... .....+|+|+|++.+...... +.-.++++||+||||++... ......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 258 (479)
T 3fmp_B 182 IEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258 (479)
T ss_dssp HHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHH
T ss_pred HHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHH
Confidence 77765 34455444443322111 123468999999999776533 22246899999999987542 222222
Q ss_pred HHHhc--ccceEEEEeCCCCC
Q psy12466 523 LMTGL--NIRKRILLSGTPLQ 541 (680)
Q Consensus 523 ~l~~l--~~~~rllLTgTP~~ 541 (680)
.+... .....+++||||-.
T Consensus 259 ~i~~~~~~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 259 RIQRMLPRNCQMLLFSATFED 279 (479)
T ss_dssp HHHTTSCTTSEEEEEESCCCH
T ss_pred HHHhhCCccceEEEEeCCCCH
Confidence 33332 34567999999943
No 57
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.17 E-value=3.6e-10 Score=137.50 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=109.5
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
...|+|+|.+++..+. .+...|++.++|.|||+++...+......+ +++||++|. .|..||.+
T Consensus 182 ~f~ltp~Q~~AI~~i~---------~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-------~rvlvl~PtraLa~Q~~~ 245 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCID---------RGESVLVSAHTSAGKTVVAEYAIAQSLKNK-------QRVIYTSPIKALSNQKYR 245 (1108)
T ss_dssp SSCCCHHHHHHHHHHT---------TTCCEEEECCSSSHHHHHHHHHHHHHHHTT-------CEEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---------cCCCEEEECCCCCChHHHHHHHHHHHHhcC-------CeEEEEcCcHHHHHHHHH
Confidence 3468999999998863 347899999999999999866665555443 369999997 78899999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCcc--cHHHHHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNGK--SKLYELMT 525 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~~--s~~~~~l~ 525 (680)
+|.++++ .+.++.+.... ....+|+|+|++.+......-. -.++++||+||||++.... ......+.
T Consensus 246 ~l~~~~~--~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~ 316 (1108)
T 3l9o_A 246 ELLAEFG--DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETII 316 (1108)
T ss_dssp HHHHHTS--SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHH
T ss_pred HHHHHhC--CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHH
Confidence 9999988 45656554432 2357899999999877543311 1258999999999986532 22333344
Q ss_pred hc-ccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 526 GL-NIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 526 ~l-~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
.+ .....++|||| +.|. .++...+.
T Consensus 317 ~l~~~~qvl~lSAT-ipn~-~e~a~~l~ 342 (1108)
T 3l9o_A 317 LLPDKVRYVFLSAT-IPNA-MEFAEWIC 342 (1108)
T ss_dssp HSCTTSEEEEEECS-CSSC-HHHHHHHH
T ss_pred hcCCCceEEEEcCC-CCCH-HHHHHHHH
Confidence 44 34567999999 4443 44444433
No 58
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.17 E-value=2.2e-10 Score=133.85 Aligned_cols=158 Identities=23% Similarity=0.201 Sum_probs=108.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|+|+|.+++..+. .+..++++.++|.|||.++...+......+ +++|+++|. .+..||.+++
T Consensus 25 ~l~~~Q~~~i~~i~---------~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF---------SGKNLLLAMPTAAGKTLLAEMAMVREAIKG-------GKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp CCCCCCHHHHHHHT---------TCSCEEEECSSHHHHHHHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---------CCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CcEEEEeCcHHHHHHHHHHH
Confidence 58999999998853 257899999999999999855554333332 259999998 5889999999
Q ss_pred HHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCc--ccHHHHHHHh
Q psy12466 452 KKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNG--KSKLYELMTG 526 (680)
Q Consensus 452 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~--~s~~~~~l~~ 526 (680)
+++.+ +.++....|....... .....+|+|+|++.+......-. -.++++||+||+|.+... .......+..
T Consensus 89 ~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~ 165 (702)
T 2p6r_A 89 KKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK 165 (702)
T ss_dssp TTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHH
Confidence 76654 3456666654433222 12368999999999976554321 136789999999998652 2222223333
Q ss_pred c----ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 527 L----NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 527 l----~~~~rllLTgTP~~n~~~el~sll 551 (680)
+ ...+.++||||+- +..++...+
T Consensus 166 l~~~~~~~~ii~lSATl~--n~~~~~~~l 192 (702)
T 2p6r_A 166 MRRMNKALRVIGLSATAP--NVTEIAEWL 192 (702)
T ss_dssp HHHHCTTCEEEEEECCCT--THHHHHHHT
T ss_pred HHhcCcCceEEEECCCcC--CHHHHHHHh
Confidence 3 3567799999985 266665543
No 59
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.17 E-value=1.3e-10 Score=132.67 Aligned_cols=160 Identities=15% Similarity=0.092 Sum_probs=108.2
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
..++|+|.+++..++. ++.+++..++|.|||+..+..+. ... +++|||+|. +|+.||.+.
T Consensus 43 ~~~rp~Q~~~i~~il~---------g~d~lv~~pTGsGKTl~~~lpal--~~~--------g~~lVisP~~~L~~q~~~~ 103 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA---------GKEVFLVMPTGGGKSLCYQLPAL--CSD--------GFTLVICPLISLMEDQLMV 103 (591)
T ss_dssp CSCCTTHHHHHHHHHT---------TCCEEEECCTTSCTTHHHHHHHH--TSS--------SEEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEECCCChHHHHHHHHHH--HcC--------CcEEEEeCHHHHHHHHHHH
Confidence 3689999999988854 36799999999999986543332 111 369999997 888999999
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhh------hcCCCCEEEEeHHHHHH---HHHhh----hccCceEEEEcCcccccCcc
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYV------YSRVSPVLIISYEMLIR---AYQTI----VDTEFDLLICDEGHRLKNGK 517 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~vvI~ty~~l~~---~~~~l----~~~~~~~vIlDEaH~~kn~~ 517 (680)
+.++ +..+..+++.......... .....+|+++|++.+.. ..+.+ ....+++||+||||.+...+
T Consensus 104 l~~~--gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g 181 (591)
T 2v1x_A 104 LKQL--GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWG 181 (591)
T ss_dssp HHHH--TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTC
T ss_pred HHhc--CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccc
Confidence 9997 4555555555433221111 24578999999998742 22222 23478999999999975422
Q ss_pred -------cHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 518 -------SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 518 -------s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
.........+....+++|||||-.....++...+.
T Consensus 182 ~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 182 HDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp TTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhC
Confidence 11112223345667899999997665566655554
No 60
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.15 E-value=3.2e-10 Score=132.72 Aligned_cols=159 Identities=23% Similarity=0.220 Sum_probs=109.8
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHH-HHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIW-TLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~-~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.|+|+|.+++..++ ..+...+++.++|.|||.++...+. .+...+ +++++++|. .+..||.++
T Consensus 30 ~l~~~Q~~~i~~~~--------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~-------~~il~i~P~r~La~q~~~~ 94 (715)
T 2va8_A 30 KLNPPQTEAVKKGL--------LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG-------GKAIYVTPLRALTNEKYLT 94 (715)
T ss_dssp BCCHHHHHHHHTTT--------TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-------SEEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC-------CeEEEEeCcHHHHHHHHHH
Confidence 68999999997632 2357899999999999999855554 333332 369999998 588999999
Q ss_pred HHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCc--ccHHHHHHH
Q psy12466 451 FKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNG--KSKLYELMT 525 (680)
Q Consensus 451 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~--~s~~~~~l~ 525 (680)
++++.+ +.++....|........ ....+|+|+|++.+......-. -.++++||+||+|.+.+. .......+.
T Consensus 95 ~~~~~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~ 171 (715)
T 2va8_A 95 FKDWELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTI 171 (715)
T ss_dssp HGGGGGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHH
T ss_pred HHHhhcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHH
Confidence 966543 34565555544332221 2368999999999877554321 236799999999998642 222333444
Q ss_pred hcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 526 GLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 526 ~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
.++..+.++||||+-. ..++...+
T Consensus 172 ~~~~~~ii~lSATl~n--~~~~~~~l 195 (715)
T 2va8_A 172 RAKRRNLLALSATISN--YKQIAKWL 195 (715)
T ss_dssp HHHTSEEEEEESCCTT--HHHHHHHH
T ss_pred hcccCcEEEEcCCCCC--HHHHHHHh
Confidence 5567788999999953 56665544
No 61
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.15 E-value=2.3e-10 Score=134.01 Aligned_cols=159 Identities=21% Similarity=0.228 Sum_probs=110.0
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.|+|+|.+++..++ ..+...+++.++|.|||.++ ++++..+...+ +++|+++|. .+..||.++
T Consensus 23 ~l~~~Q~~~i~~~~--------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~-------~~~l~i~P~raLa~q~~~~ 87 (720)
T 2zj8_A 23 SFYPPQAEALKSGI--------LEGKNALISIPTASGKTLIAEIAMVHRILTQG-------GKAVYIVPLKALAEEKFQE 87 (720)
T ss_dssp BCCHHHHHHHTTTG--------GGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC-------SEEEEECSSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------cCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC-------CEEEEEcCcHHHHHHHHHH
Confidence 58999999997522 12578999999999999998 45554554333 369999997 888999999
Q ss_pred HHHHhC-CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh--ccCceEEEEcCcccccCc--ccHHHHHHH
Q psy12466 451 FKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDEGHRLKNG--KSKLYELMT 525 (680)
Q Consensus 451 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~--~~~~~~vIlDEaH~~kn~--~s~~~~~l~ 525 (680)
+.++.+ +.++..+.|....... .....+|+|+|++.+......-. -.++++||+||+|.+... .......+.
T Consensus 88 ~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~ 164 (720)
T 2zj8_A 88 FQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILA 164 (720)
T ss_dssp TGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred HHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHH
Confidence 976654 4566666664433222 12368999999999976544321 136899999999998652 222333344
Q ss_pred hcc-cceEEEEeCCCCCCCHHHHHHHH
Q psy12466 526 GLN-IRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 526 ~l~-~~~rllLTgTP~~n~~~el~sll 551 (680)
.++ ..+.++||||+-. ..++...+
T Consensus 165 ~l~~~~~ii~lSATl~n--~~~~~~~l 189 (720)
T 2zj8_A 165 HMLGKAQIIGLSATIGN--PEELAEWL 189 (720)
T ss_dssp HHBTTBEEEEEECCCSC--HHHHHHHT
T ss_pred HhhcCCeEEEEcCCcCC--HHHHHHHh
Confidence 444 5678999999853 56665543
No 62
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.14 E-value=3.3e-10 Score=136.61 Aligned_cols=157 Identities=21% Similarity=0.165 Sum_probs=112.6
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
.-.|+|+|.+++..+.+ +..++++.++|.|||+++...+......+ .++||++|. .|..||.+
T Consensus 37 ~f~l~~~Q~~aI~~il~---------g~~vlv~apTGsGKTlv~~~~i~~~~~~g-------~~vlvl~PtraLa~Q~~~ 100 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ---------GDSVFVAAHTSAGKTVVAEYAIAMAHRNM-------TKTIYTSPIKALSNQKFR 100 (997)
T ss_dssp SSCCCHHHHHHHHHHHT---------TCEEEEECCTTSCSHHHHHHHHHHHHHTT-------CEEEEEESCGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc---------CCCEEEEECCCCcHHHHHHHHHHHHHhcC-------CeEEEEeCCHHHHHHHHH
Confidence 34689999999987743 46899999999999997665555554443 369999996 78899999
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhh--hccCceEEEEcCcccccCc--ccHHHHHHH
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDEGHRLKNG--KSKLYELMT 525 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l--~~~~~~~vIlDEaH~~kn~--~s~~~~~l~ 525 (680)
++.++++...+..+++..... ...+|+|+|.+.+......- .-.++++||+||||++.+. .......+.
T Consensus 101 ~l~~~~~~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 101 DFKETFDDVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp HHHTTC--CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred HHHHHcCCCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHH
Confidence 999998877888777754322 35789999999997655332 2246899999999998653 333445555
Q ss_pred hcc-cceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 526 GLN-IRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 526 ~l~-~~~rllLTgTP~~n~~~el~sll~ 552 (680)
.+. ....++|||||-. ..++...+.
T Consensus 174 ~l~~~v~iIlLSAT~~n--~~ef~~~l~ 199 (997)
T 4a4z_A 174 MLPQHVKFILLSATVPN--TYEFANWIG 199 (997)
T ss_dssp HSCTTCEEEEEECCCTT--HHHHHHHHH
T ss_pred hcccCCCEEEEcCCCCC--hHHHHHHHh
Confidence 554 4567999999743 335555443
No 63
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.11 E-value=4.4e-10 Score=117.59 Aligned_cols=155 Identities=13% Similarity=0.111 Sum_probs=100.7
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHH-HHHHHHHhcCCCCCCccceEEEEecc-chHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI-ALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWND 449 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~ai-ali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~ 449 (680)
..+.|+|.+++..++. ..++..|+...+|+|||+..+ .++..+..... ..++|||||. .|..|+.+
T Consensus 113 ~~pt~iQ~~ai~~il~-------~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~-----~~~~lil~PtreLa~Q~~~ 180 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA-------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK-----YPQCLCLSPTYELALQTGK 180 (300)
T ss_dssp CSCCHHHHHHHHHHTS-------SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSC-----SCCEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------CCCCeEEEECCCCCCccHHHHHHHHHhhhccCC-----CceEEEEcCcHHHHHHHHH
Confidence 4578899999977642 234789999999999999854 33433322221 2259999997 78899988
Q ss_pred HHHHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh---hhccCceEEEEcCcccccC--cccHHH
Q psy12466 450 EFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLICDEGHRLKN--GKSKLY 521 (680)
Q Consensus 450 E~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~---l~~~~~~~vIlDEaH~~kn--~~s~~~ 521 (680)
.+.++.. ...+....+........ ....+|+|+|.+.+...+.. +.-..+.+||+||||++-. ......
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~ 257 (300)
T 3fmo_B 181 VIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQS 257 (300)
T ss_dssp HHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHH
T ss_pred HHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHH
Confidence 8888764 44555554443322111 24568999999999776633 2223688999999999753 111222
Q ss_pred HHH-Hhc-ccceEEEEeCCCCC
Q psy12466 522 ELM-TGL-NIRKRILLSGTPLQ 541 (680)
Q Consensus 522 ~~l-~~l-~~~~rllLTgTP~~ 541 (680)
..+ ..+ .....+++|||+-.
T Consensus 258 ~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 258 IRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp HHHHTTSCTTCEEEEEESCCCH
T ss_pred HHHHHhCCCCCEEEEEeccCCH
Confidence 222 233 33467999999843
No 64
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.04 E-value=1.1e-09 Score=133.31 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=111.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
++.|+|.+++..+++ +...++...+|+|||..++..+......+ .++|||+|. .|..|+.+.+
T Consensus 78 ~pt~iQ~~ai~~il~---------g~dvlv~ApTGSGKTl~~l~~il~~~~~~-------~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ---------GKSFTMVAPTGVGKTTFGMMTALWLARKG-------KKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp CCCHHHHHHHHHHTT---------TCCEEECCSTTCCHHHHHHHHHHHHHTTT-------CCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---------CCCEEEEeCCCCcHHHHHHHHHHHHHhcC-------CeEEEEechHHHHHHHHHHH
Confidence 478999999987743 46789999999999996655555544333 359999997 7889999999
Q ss_pred HHHh-CCCCeeEeecCCcchh----hhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc---------
Q psy12466 452 KKWL-GLTRMCPYHVNQKNKA----EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK--------- 517 (680)
Q Consensus 452 ~~~~-~~~~v~~~~~~~~~~~----~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~--------- 517 (680)
.++. ...++..+++...... ......+..+|+|+|.+.+.+....+...++++||+||||.+....
T Consensus 142 ~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 142 QKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp HTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred HHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHh
Confidence 9976 2346777776654411 1222334589999999999777666666789999999999864311
Q ss_pred ----cH-HHHHHHhc------------ccceEEEEeCCCCCCCHHH
Q psy12466 518 ----SK-LYELMTGL------------NIRKRILLSGTPLQNDLQE 546 (680)
Q Consensus 518 ----s~-~~~~l~~l------------~~~~rllLTgTP~~n~~~e 546 (680)
.. ....+..+ .....+++||||....+.+
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~ 267 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP 267 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTT
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHH
Confidence 11 22333333 2346799999987766553
No 65
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.80 E-value=2e-09 Score=118.22 Aligned_cols=108 Identities=9% Similarity=0.081 Sum_probs=76.0
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI 266 (680)
..++|||||. +|+.+|.+||.+|++ ..++..+++.......... ...++|+|+||+++..... .+....|++||
T Consensus 52 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vI 130 (494)
T 1wp9_A 52 GGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIV 130 (494)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEE
Confidence 4589999997 899999999999984 3366677666543322111 1357899999999987665 34557799999
Q ss_pred EcCCCCCCCCCCCCC--cc-ccCCCCCCceeccCCCC
Q psy12466 267 CDEKSLLKPPSGNSP--GN-DSGIPSLPRKSDSGIGS 300 (680)
Q Consensus 267 ~DEaH~lKN~~s~~~--~a-~~~l~~~~r~~LTG~~~ 300 (680)
+||||++++..+... +. .......++++|||+..
T Consensus 131 iDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG 167 (494)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC
T ss_pred EECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC
Confidence 999999997533211 11 11234667999998753
No 66
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.77 E-value=5.8e-09 Score=107.47 Aligned_cols=69 Identities=30% Similarity=0.310 Sum_probs=46.4
Q ss_pred eeeechhHHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHhccCccccCCC
Q psy12466 604 ILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA-------SRDSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 604 ~lRrtk~~v~~~LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-------~~~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
-+||+|++|..+||++.+.+++|+||+.|+++|+.+++.....+ +...+++.+++|||+||||.|+.+.
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~ 88 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG 88 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCS
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCC
Confidence 58999999999999999999999999999999999998775544 2345788999999999999998743
No 67
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.75 E-value=2.3e-08 Score=121.40 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=103.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFK 452 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~ 452 (680)
+ |+|.+++..+++ ++..++..++|+|||+.++.++..+...+ .++|||+|. .|..|+.+++.
T Consensus 58 p-~iQ~~ai~~il~---------g~dvlv~apTGSGKTl~~lp~l~~~~~~~-------~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 58 R-AIQKMWAKRILR---------KESFAATAPTGVGKTSFGLAMSLFLALKG-------KRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp C-HHHHHHHHHHHT---------TCCEECCCCBTSCSHHHHHHHHHHHHTTS-------CCEEEEESCHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHh---------CCCEEEEcCCCCCHHHHHHHHHHHHhhcC-------CeEEEEeccHHHHHHHHHHHH
Confidence 6 899999987753 36899999999999985555555554433 259999997 78899999999
Q ss_pred HHhCCC------CeeEeecCCcchhh--hhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHH
Q psy12466 453 KWLGLT------RMCPYHVNQKNKAE--DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524 (680)
Q Consensus 453 ~~~~~~------~v~~~~~~~~~~~~--~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l 524 (680)
+++... ++..++|....... ........+|+|+|.+.+......+. .+++||+||||++.+........+
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~ 198 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLL 198 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHH
Confidence 998654 45556655443321 11111128999999999987555433 688999999999876433333333
Q ss_pred Hhc------------ccceEEEEeCCCCCC
Q psy12466 525 TGL------------NIRKRILLSGTPLQN 542 (680)
Q Consensus 525 ~~l------------~~~~rllLTgTP~~n 542 (680)
..+ .....+++|||+-..
T Consensus 199 ~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 199 HLLGFHYDLKTKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp HHTTEEEETTTTEEEECCSSEEEECCCCSC
T ss_pred HHhCcchhhhhhhcccCCceEEEEecCCCc
Confidence 333 123458888887655
No 68
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.72 E-value=1.4e-07 Score=94.72 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=92.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHH-HHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT-LLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~-~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
.++++|.+++..+.. +...++...+|.|||.+...++.. ....+. .....+++++|. .+..|..+.
T Consensus 61 p~~~~q~~~i~~i~~---------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 61 PVKKFESEILEAISQ---------NSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp GGGGGHHHHHHHHHH---------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc---------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHH
Confidence 378899999988754 367889999999999765554433 333221 112368999997 455777777
Q ss_pred HHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc-cCcccH--HHHHH-Hh
Q psy12466 451 FKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL-KNGKSK--LYELM-TG 526 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~-kn~~s~--~~~~l-~~ 526 (680)
+...++..- ....+. ..+..........+|+|+|.+.+.+.... .-.++++||+||||.. -+.+.. ..+.+ ..
T Consensus 129 ~~~~~~~~~-~~~~g~-~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 129 VAFERGEEP-GKSCGY-SVRFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp HHHTTTCCT-TSSEEE-EETTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccc-CceEEE-eechhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 776654311 000010 01111111123467999999988776544 2346899999999973 111111 11222 22
Q ss_pred cccceEEEEeCCCCCC
Q psy12466 527 LNIRKRILLSGTPLQN 542 (680)
Q Consensus 527 l~~~~rllLTgTP~~n 542 (680)
......+++|||+-..
T Consensus 206 ~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 206 YPEVRIVLMSATIDTS 221 (235)
T ss_dssp CTTSEEEEEECSSCCH
T ss_pred CCCCeEEEEecCCCHH
Confidence 2445679999998544
No 69
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.59 E-value=1.8e-07 Score=102.75 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 397 LEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
++..++..++|.|||.++ ++++......+ .++||++|. .|..|+.+.+. ...+....+....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g-------~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~----- 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR-------LRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQS----- 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHTT----TSCEEEC-----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC-------CCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccc-----
Confidence 467899999999999997 55554554443 259999998 56688777664 3444433332111
Q ss_pred hhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCccc-HHHHHHHhc---ccceEEEEeCCCCCC
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKS-KLYELMTGL---NIRKRILLSGTPLQN 542 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s-~~~~~l~~l---~~~~rllLTgTP~~n 542 (680)
.......+.+++...+...... ..-.++++||+||+|++ +... .....+..+ .....++|||||...
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 1112344666777776543222 11346899999999998 3222 222233333 356789999999753
No 70
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.56 E-value=2.4e-08 Score=103.13 Aligned_cols=100 Identities=18% Similarity=0.311 Sum_probs=67.9
Q ss_pred eEEEEECc-ccHHHHHHHHHHHhCCCC--eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWLGLTR--MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
++|||||. +|+.||.+||.+|..... +..+.++... .. ......+|+|+||+.+.+..... -..+++||+|||
T Consensus 159 ~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEa 234 (282)
T 1rif_A 159 KILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASK-DD--KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDEC 234 (282)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSS-TT--CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETG
T ss_pred eEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcc-hh--hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECC
Confidence 89999997 788999999999975332 2333232211 11 22255789999999886543321 246899999999
Q ss_pred CCCCCCCCCCCccccCC-CCCCceeccCCC
Q psy12466 271 SLLKPPSGNSPGNDSGI-PSLPRKSDSGIG 299 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l-~~~~r~~LTG~~ 299 (680)
|+++++ .....+..+ .+.++++|||+.
T Consensus 235 H~~~~~--~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 235 HLATGK--SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp GGCCHH--HHHHHTTTCTTCCEEEEECSSC
T ss_pred ccCCcc--cHHHHHHHhhcCCeEEEEeCCC
Confidence 999975 334455555 456688888765
No 71
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.54 E-value=5.3e-08 Score=107.94 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=72.7
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCC-eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
+++|||||. +|+.||.++|.+ ++ .+ +..++++.. ...+|+|+||+.+......+. ..|++||+||+
T Consensus 134 ~~~Lvl~P~~~L~~Q~~~~~~~-~~-~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEa 201 (472)
T 2fwr_A 134 TPTLIVVPTLALAEQWKERLGI-FG-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEV 201 (472)
T ss_dssp SCEEEEESSHHHHHHHHHHGGG-GC-GGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETG
T ss_pred CCEEEEECCHHHHHHHHHHHHh-CC-CcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECC
Confidence 589999999 999999999999 45 45 666665542 236899999999987766553 45999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCceeccCCCC
Q psy12466 271 SLLKPPSGNSPGNDSGIPSLPRKSDSGIGS 300 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l~~~~r~~LTG~~~ 300 (680)
|++.++..+ ..+..+.+.++++|||+..
T Consensus 202 H~~~~~~~~--~~~~~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 202 HHLPAESYV--QIAQMSIAPFRLGLTATFE 229 (472)
T ss_dssp GGTTSTTTH--HHHHTCCCSEEEEEESCCC
T ss_pred cCCCChHHH--HHHHhcCCCeEEEEecCcc
Confidence 999987543 3555567777888887654
No 72
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.53 E-value=8.9e-08 Score=96.51 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=70.1
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCC-eeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcC
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDE 269 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DE 269 (680)
..++|||||. +|+.+|.++|.+ ++ .+ +..+.+... ...+|+|+||+.+......+. ..|++||+||
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~-~~-~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDE 200 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGI-FG-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDE 200 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGG-GC-GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh-CC-CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEEC
Confidence 3579999998 788999999999 44 34 555555432 246899999999987666543 4699999999
Q ss_pred CCCCCCCCCCCCccccCCCCCCceeccCCC
Q psy12466 270 KSLLKPPSGNSPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 270 aH~lKN~~s~~~~a~~~l~~~~r~~LTG~~ 299 (680)
+|++.+..- .+.+..+...++++|||+.
T Consensus 201 aH~l~~~~~--~~i~~~~~~~~~l~LSATp 228 (237)
T 2fz4_A 201 VHHLPAESY--VQIAQMSIAPFRLGLTATF 228 (237)
T ss_dssp SSCCCTTTH--HHHHHTCCCSEEEEEEESC
T ss_pred CccCCChHH--HHHHHhccCCEEEEEecCC
Confidence 999987542 2344556677788888764
No 73
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.52 E-value=6.7e-07 Score=113.01 Aligned_cols=160 Identities=14% Similarity=0.180 Sum_probs=102.9
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+.|.|.+++.-++. .+.+.+++..+|.|||+.+.. ++..+..... +++|+|+|. +|..|=.+++
T Consensus 927 fnpiQ~q~~~~l~~--------~~~nvlv~APTGSGKTliaelail~~l~~~~~------~kavyi~P~raLa~q~~~~~ 992 (1724)
T 4f92_B 927 FNPIQTQVFNTVYN--------SDDNVFVGAPTGSGKTICAEFAILRMLLQSSE------GRCVYITPMEALAEQVYMDW 992 (1724)
T ss_dssp CCHHHHHHHHHHHS--------CCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT------CCEEEECSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc--------CCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC------CEEEEEcChHHHHHHHHHHH
Confidence 56779988877653 457899999999999998744 4444444321 358999997 7777777777
Q ss_pred HHHhC---CCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhc----cCceEEEEcCcccccCcccHHHHH-
Q psy12466 452 KKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD----TEFDLLICDEGHRLKNGKSKLYEL- 523 (680)
Q Consensus 452 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~----~~~~~vIlDEaH~~kn~~s~~~~~- 523 (680)
.+.++ +.++..+.|....... .....+|+|+|++.+......... .+..+||+||+|.+..........
T Consensus 993 ~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~i 1069 (1724)
T 4f92_B 993 YEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVI 1069 (1724)
T ss_dssp HHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHH
T ss_pred HHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHH
Confidence 65442 2455555554332221 223578999999998654433222 247899999999997644333322
Q ss_pred HHhc--------ccceEEEEeCCCCCCCHHHHHHHHh
Q psy12466 524 MTGL--------NIRKRILLSGTPLQNDLQEFFYLND 552 (680)
Q Consensus 524 l~~l--------~~~~rllLTgTP~~n~~~el~sll~ 552 (680)
+.++ ...+.++||||-- +..|+...+.
T Consensus 1070 l~rl~~i~~~~~~~~riI~lSATl~--N~~dla~WL~ 1104 (1724)
T 4f92_B 1070 CSRMRYISSQIERPIRIVALSSSLS--NAKDVAHWLG 1104 (1724)
T ss_dssp HHHHHHHHHTTSSCCEEEEEESCBT--THHHHHHHHT
T ss_pred HHHHHHHHhhcCCCceEEEEeCCCC--CHHHHHHHhC
Confidence 2222 2346699999952 5777765543
No 74
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.49 E-value=8.6e-08 Score=107.74 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=77.4
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--h-hcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l-~~~~~~~v 265 (680)
..++|||||+ +|..+|.++|.+|++ ..++..++|+..............+|+|+||+.+...... + .-..|++|
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~v 131 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLM 131 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEE
Confidence 5689999998 889999999999985 3566666665533222111223478999999999876653 2 23458999
Q ss_pred EEcCCCCCCCCCCCCCccccCC---------CCCCceeccCCCCCCCCCCchh
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSGI---------PSLPRKSDSGIGSLPCKRPLEE 309 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~l---------~~~~r~~LTG~~~~~~~~~~~e 309 (680)
|+||||++.+..+........+ ...++++||++......+.+.+
T Consensus 132 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~ 184 (555)
T 3tbk_A 132 IFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEE 184 (555)
T ss_dssp EETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHH
T ss_pred EEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHH
Confidence 9999999998653111110111 2235788887765444444444
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.47 E-value=3.7e-07 Score=103.42 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=85.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+||+|.+.+..+.+.+ ..++.+++...+|+|||+..+.-+.. . ..+++|++|+ .+..|+.+++
T Consensus 3 ~~r~~Q~~~~~~v~~~l-----~~~~~~~~~a~TGtGKT~~~l~p~l~---~-------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGL-----RNNFLVALNAPTGSGKTLFSLLVSLE---V-------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp SCCHHHHHHHHHHHHHH-----HTTCEEEEECCTTSSHHHHHHHHHHH---H-------CSEEEEEESSGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-----HcCCcEEEECCCCccHHHHHHHHHHh---C-------CCeEEEEcCCHHHHHHHHHHH
Confidence 58999999887766543 23467888899999999987654433 1 1369999997 6779999999
Q ss_pred HHHhC--CCCeeEeecCCcc----------------------------------hhhh-----------------hhhcC
Q psy12466 452 KKWLG--LTRMCPYHVNQKN----------------------------------KAED-----------------YVYSR 478 (680)
Q Consensus 452 ~~~~~--~~~v~~~~~~~~~----------------------------------~~~~-----------------~~~~~ 478 (680)
.++.. ..++.++.+...- .... .....
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 88743 3344443331100 0000 01123
Q ss_pred CCCEEEEeHHHHHHHHHhh---hccCceEEEEcCcccccC
Q psy12466 479 VSPVLIISYEMLIRAYQTI---VDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l---~~~~~~~vIlDEaH~~kn 515 (680)
..+|||++|..+....... ......+||+||||++-+
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 5799999999997653221 113567899999999965
No 76
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.46 E-value=8.5e-08 Score=108.00 Aligned_cols=116 Identities=10% Similarity=0.058 Sum_probs=75.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--h-hcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l-~~~~~~~v 265 (680)
..++|||||. +|..+|.++|.+|++ ..++..++++..............+|+|+||+.+...... + .-..|++|
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~v 134 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 134 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEE
Confidence 5689999998 899999999999986 4666666665533222111223478999999999876653 3 33568999
Q ss_pred EEcCCCCCCCCCCCCCccc--cCC--------CCCCceeccCCCCCCCCCCchh
Q psy12466 266 ICDEKSLLKPPSGNSPGND--SGI--------PSLPRKSDSGIGSLPCKRPLEE 309 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~--~~l--------~~~~r~~LTG~~~~~~~~~~~e 309 (680)
|+||||++.+... +..+ ..+ ...++++||++....-.+.+.+
T Consensus 135 ViDEah~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~ 186 (556)
T 4a2p_A 135 IFDECHNTTGNHP--YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 186 (556)
T ss_dssp EEETGGGCSTTSH--HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHH
T ss_pred EEECCcccCCcch--HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHH
Confidence 9999999988653 1111 111 2245788887654444344433
No 77
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.43 E-value=6.7e-07 Score=101.06 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=78.3
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.+||+|.+.+..+.+.+ ..++.+++...+|+|||+..+..+. .. + .+++|++|+ .+..||.+++
T Consensus 7 ~~r~~Q~~~~~~v~~~~-----~~~~~~~~~a~TGtGKT~~~l~~~~--~~-~-------~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINAL-----KHGKTLLLNAKPGLGKTVFVEVLGM--QL-K-------KKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp --CCHHHHHHHHHHHHH-----HTTCEEEEECCTTSCHHHHHHHHHH--HH-T-------CEEEEEESCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-----HcCCCEEEEcCCCCcHHHHHHHHHH--hC-C-------CcEEEEcCCHHHHHHHHHHH
Confidence 68999999887665543 2346789999999999986544432 22 1 369999997 7789999998
Q ss_pred HHHhCCCCeeEeecCCcc--------h-----------------------------------hhh----hhhcCCCCEEE
Q psy12466 452 KKWLGLTRMCPYHVNQKN--------K-----------------------------------AED----YVYSRVSPVLI 484 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~--------~-----------------------------------~~~----~~~~~~~~vvI 484 (680)
.++ + .++....+...- . ... .......+|+|
T Consensus 72 ~~l-~-~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 72 KLL-G-LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp GGG-T-CCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred Hhc-C-CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 874 2 233332221100 0 000 00113468999
Q ss_pred EeHHHHHHHHH--hhh-------ccCceEEEEcCccccc
Q psy12466 485 ISYEMLIRAYQ--TIV-------DTEFDLLICDEGHRLK 514 (680)
Q Consensus 485 ~ty~~l~~~~~--~l~-------~~~~~~vIlDEaH~~k 514 (680)
++|+.+..... .+. ....++||+||||++-
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999975432 221 2357899999999993
No 78
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.43 E-value=2.4e-06 Score=107.94 Aligned_cols=167 Identities=17% Similarity=0.113 Sum_probs=106.3
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHH-HHHHHHhcCCC---CCCccceEEEEecc-chHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA-LIWTLLRQGPY---GMPVIRKVLIVTPS-SLTSN 446 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aia-li~~~~~~~~~---~~~~~~~~LIV~P~-sll~q 446 (680)
..|.+.|..++..+++ .+.+.+++..+|.|||+.+.. ++..+...... ......++|+|+|. +|..+
T Consensus 78 ~~ln~iQs~~~~~al~--------~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e 149 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALE--------TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 149 (1724)
T ss_dssp SBCCHHHHHTHHHHHT--------CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--------CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHH
Confidence 4577889998876653 457899999999999999744 44455432211 11124579999996 78888
Q ss_pred HHHHHHHHhCC--CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhh----ccCceEEEEcCcccccCcccHH
Q psy12466 447 WNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV----DTEFDLLICDEGHRLKNGKSKL 520 (680)
Q Consensus 447 W~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~----~~~~~~vIlDEaH~~kn~~s~~ 520 (680)
=.++|.+.+.. .++..+.|+...... .....+|+|||++.+........ -....+||+||+|.+.+.....
T Consensus 150 ~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~ 226 (1724)
T 4f92_B 150 MVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPV 226 (1724)
T ss_dssp HHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHH
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHH
Confidence 88888777654 355556654432221 12357899999998754322111 1257899999999986532222
Q ss_pred HHH-HH-------hc-ccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 521 YEL-MT-------GL-NIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 521 ~~~-l~-------~l-~~~~rllLTgTP~~n~~~el~sll 551 (680)
... +. .+ ..-++++||||- .++.|+...+
T Consensus 227 lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~wL 264 (1724)
T 4f92_B 227 LEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVATFL 264 (1724)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHHHh
Confidence 221 11 11 234679999994 2577765533
No 79
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.41 E-value=1e-06 Score=97.38 Aligned_cols=128 Identities=15% Similarity=0.199 Sum_probs=77.5
Q ss_pred CceEEEcCCCCChHHH-HHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 398 EGAILADEMGLGKTLQ-CIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~-aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
...++..++|+|||.+ .+.++......+ .++||++|. .|..|+.+++. ...+. +....... .
T Consensus 20 ~~~lv~a~TGsGKT~~~~~~~l~~~~~~~-------~~~lvl~Ptr~La~Q~~~~l~----g~~v~-~~~~~~~~----~ 83 (451)
T 2jlq_A 20 RLTIMDLHPGAGKTKRILPSIVREALLRR-------LRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVKS----D 83 (451)
T ss_dssp CEEEECCCTTSSCCTTHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTCSC----C
T ss_pred CeEEEECCCCCCHhhHHHHHHHHHHHhcC-------CcEEEECCCHHHHHHHHHHhc----Cceee-eeeccccc----c
Confidence 4458888999999997 455555544433 259999997 66788888774 22222 11111100 1
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhh-ccCceEEEEcCcccccCcccHHHHH-HHh---cccceEEEEeCCCCCC
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIV-DTEFDLLICDEGHRLKNGKSKLYEL-MTG---LNIRKRILLSGTPLQN 542 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~-~~~~~~vIlDEaH~~kn~~s~~~~~-l~~---l~~~~rllLTgTP~~n 542 (680)
......+.+++.+.+........ -.++++||+||||++ +........ +.. ......++|||||...
T Consensus 84 ~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 154 (451)
T 2jlq_A 84 HTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS 154 (451)
T ss_dssp CCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred CCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCcc
Confidence 22345688899888765443322 236899999999987 322222111 111 1345779999999553
No 80
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.39 E-value=2.4e-07 Score=107.82 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=74.6
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--h-hcCCCcEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l-~~~~~~~vI 266 (680)
.++|||||+ +|+.||.++|++|++ ..++..++|+..............+|+|+||+.+...... + .-..|++||
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vV 141 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 141 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEE
Confidence 589999997 899999999999996 4566666665433222111123579999999999876653 2 234689999
Q ss_pred EcCCCCCCCCCCCCCcc---cc----C--CCCCCceeccCCCCCCC
Q psy12466 267 CDEKSLLKPPSGNSPGN---DS----G--IPSLPRKSDSGIGSLPC 303 (680)
Q Consensus 267 ~DEaH~lKN~~s~~~~a---~~----~--l~~~~r~~LTG~~~~~~ 303 (680)
+||||++++........ +. . -...++++|||+.....
T Consensus 142 iDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~ 187 (696)
T 2ykg_A 142 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 187 (696)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSS
T ss_pred EeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCc
Confidence 99999999765321111 00 0 13345788998765433
No 81
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.38 E-value=3.9e-07 Score=89.25 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCeEEEEECc-ccHHH-HHHHHHHHhCC-CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--------hhcC
Q psy12466 192 ILRVLIVTPS-SLTSN-WNDEFKKWLGL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--------IVDT 260 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~n-W~~E~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--------l~~~ 260 (680)
..++|||||. .|..+ |.+++.+|.+. .++..+.++..............+|+|+||+.+...... +.-.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~ 161 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLS 161 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGG
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchh
Confidence 4689999998 56678 99999999863 445555544322211111113478999999999776554 2235
Q ss_pred CCcEEEEcCCCCCCC
Q psy12466 261 EFDLLICDEKSLLKP 275 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN 275 (680)
.|++||+||||++..
T Consensus 162 ~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 162 DFSLIIIDECHHTNK 176 (216)
T ss_dssp GCSEEEETTC-----
T ss_pred cccEEEEECchhhcc
Confidence 689999999999964
No 82
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.36 E-value=5.6e-07 Score=87.80 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=63.2
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEEc
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICD 268 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~D 268 (680)
..++|||||. ++..+|.++++++++..++..++++..............+|+|+|++.+...... +.-..+++||+|
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 4579999998 8889999999999987777777666543332222224578999999998765543 233568999999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|||++.+.
T Consensus 152 Eah~~~~~ 159 (207)
T 2gxq_A 152 EADEMLSM 159 (207)
T ss_dssp SHHHHHHT
T ss_pred ChhHhhcc
Confidence 99998644
No 83
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.33 E-value=3.1e-07 Score=108.73 Aligned_cols=115 Identities=9% Similarity=0.022 Sum_probs=74.5
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--h-hcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l-~~~~~~~v 265 (680)
..++|||||. +|..||.++|++|++ ..++..++|+..............+|+|+||+.+...... + .-..|++|
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 375 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEE
Confidence 5689999996 589999999999986 5677777776543322222224578999999999876652 2 22358999
Q ss_pred EEcCCCCCCCCCCCCCccc-cC--------CCCCCceeccCCCCCCCCCCc
Q psy12466 266 ICDEKSLLKPPSGNSPGND-SG--------IPSLPRKSDSGIGSLPCKRPL 307 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~-~~--------l~~~~r~~LTG~~~~~~~~~~ 307 (680)
|+||||++.+..... ..+ .. -...++++||++......+.+
T Consensus 376 ViDEaH~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~ 425 (797)
T 4a2q_A 376 IFDECHNTTGNHPYN-VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNI 425 (797)
T ss_dssp EETTGGGCSTTSHHH-HHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSH
T ss_pred EEECccccCCCccHH-HHHHHHHHHhhccCCCCCeEEEEcCCccccccccH
Confidence 999999999865311 111 11 122447788876543333333
No 84
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.31 E-value=1.9e-06 Score=95.38 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhh
Q psy12466 395 LDLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE 472 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~ 472 (680)
..++..+++.++|+|||.+. +.++..+...+ .++||++|. .|..|+.+++.. ..+.........
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~-------~~~lvl~Ptr~La~Q~~~~l~g----~~v~~~~~~~~~--- 84 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR-------LRTAVLAPTRVVAAEMAEALRG----LPVRYQTSAVQR--- 84 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHTT-------CCEEEEECSHHHHHHHHHHTTT----SCEEECC--------
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC-------CcEEEECchHHHHHHHHHHhcC----ceEeEEeccccc---
Confidence 34577899999999999984 55565555433 259999997 677898888762 222211111000
Q ss_pred hhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCcccHHH----HHHHhcccceEEEEeCCCCCC
Q psy12466 473 DYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLY----ELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 473 ~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s~~~----~~l~~l~~~~rllLTgTP~~n 542 (680)
.......+.+++...+...... ..-.++++||+||||... ..+... ..+........++|||||-..
T Consensus 85 --~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 85 --EHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPGT 156 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred --CCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCcc
Confidence 0122344667777776543322 122468999999999852 111111 111122456789999999643
No 85
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.31 E-value=9.6e-07 Score=101.13 Aligned_cols=127 Identities=23% Similarity=0.290 Sum_probs=81.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
.++..++..++|.|||.+....+. ..+ .++||++|. .+..|+.+.+.+.++.. +....+...
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll---~~g-------~~vLVl~PTReLA~Qia~~l~~~~g~~-vg~~vG~~~------ 293 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYA---AQG-------YKVLVLNPSVAATLGFGAYMSKAHGID-PNIRTGVRT------ 293 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---HTT-------CCEEEEESCHHHHHHHHHHHHHHHSCC-CEEECSSCE------
T ss_pred cCCeEEEEeCCchhHHHHHHHHHH---HCC-------CeEEEEcchHHHHHHHHHHHHHHhCCC-eeEEECcEe------
Confidence 456688999999999977654433 222 249999998 56689988888777542 333333221
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccH-HHHHHHhccc---ceEEEEeCCCCC
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSK-LYELMTGLNI---RKRILLSGTPLQ 541 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~-~~~~l~~l~~---~~rllLTgTP~~ 541 (680)
.....+|+++|++.+... ..+...++++||+||||.+...... ....+..+.. ...++|||||-.
T Consensus 294 -~~~~~~IlV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 294 -ITTGAPVTYSTYGKFLAD-GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp -ECCCCSEEEEEHHHHHHT-TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred -ccCCCCEEEECcHHHHhC-CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 234678999999998432 2233446899999999876322211 2223333322 235788999865
No 86
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.30 E-value=5.4e-07 Score=104.81 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=60.4
Q ss_pred CeEEEEECcc-cHHHH-HHHHHHHhCC-CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--------hhhcCC
Q psy12466 193 LRVLIVTPSS-LTSNW-NDEFKKWLGL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--------TIVDTE 261 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW-~~E~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--------~l~~~~ 261 (680)
.++|||||.. |..+| .++|++|++. .++..++++..............+|+|+||+.+..... .+.-..
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~ 136 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSD 136 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGG
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceeccc
Confidence 5789999975 88999 9999999976 67777777654433222223568999999999986442 233456
Q ss_pred CcEEEEcCCCCCCCC
Q psy12466 262 FDLLICDEKSLLKPP 276 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~ 276 (680)
|++||+||||++.+.
T Consensus 137 ~~lvViDEaH~~~~~ 151 (699)
T 4gl2_A 137 FSLIIIDECHHTNKE 151 (699)
T ss_dssp CSEEEEESGGGCBTT
T ss_pred CcEEEEECccccCcc
Confidence 999999999999554
No 87
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.28 E-value=3.2e-07 Score=110.25 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=74.0
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--h-hcCCCcEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--I-VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l-~~~~~~~v 265 (680)
..++|||||.. |+.||.++|++|++ ..++..++|+..............+|+|+||+++...... + .-..|++|
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEE
Confidence 56899999965 89999999999986 4666677666533222212223578999999999876652 1 22358999
Q ss_pred EEcCCCCCCCCCCCCCccccC---------CCCCCceeccCCCCCCCCCCch
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSG---------IPSLPRKSDSGIGSLPCKRPLE 308 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~---------l~~~~r~~LTG~~~~~~~~~~~ 308 (680)
|+||||++.+.... ...+.. -...++++||++....-.+.+.
T Consensus 376 ViDEaH~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~ 426 (936)
T 4a2w_A 376 IFDECHNTTGNHPY-NVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIE 426 (936)
T ss_dssp EEETGGGCSTTCHH-HHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHH
T ss_pred EEECccccCCCccH-HHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHH
Confidence 99999999987541 111111 1224578888765433333333
No 88
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.27 E-value=2.5e-07 Score=103.59 Aligned_cols=100 Identities=19% Similarity=0.307 Sum_probs=68.7
Q ss_pred eEEEEECc-ccHHHHHHHHHHHh--CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCC
Q psy12466 194 RVLIVTPS-SLTSNWNDEFKKWL--GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEK 270 (680)
Q Consensus 194 ~~LIV~P~-sl~~nW~~E~~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEa 270 (680)
++|||||. +|..||.++|++|. +..++..++++...... .....+|+|+||+.+...... .-..|++||+||+
T Consensus 159 ~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~ 234 (510)
T 2oca_A 159 KILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDEC 234 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETG
T ss_pred eEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECC
Confidence 89999997 68899999999994 33345555554332222 235678999999987654221 1235899999999
Q ss_pred CCCCCCCCCCCccccCC-CCCCceeccCCC
Q psy12466 271 SLLKPPSGNSPGNDSGI-PSLPRKSDSGIG 299 (680)
Q Consensus 271 H~lKN~~s~~~~a~~~l-~~~~r~~LTG~~ 299 (680)
|++.+.. ..+.+..+ .+..+++|||+.
T Consensus 235 H~~~~~~--~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 235 HLATGKS--ISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp GGCCHHH--HHHHGGGCTTCCEEEEEESCG
T ss_pred cCCCccc--HHHHHHhcccCcEEEEEEeCC
Confidence 9999843 33444566 445677888765
No 89
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.22 E-value=4.3e-07 Score=103.70 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=53.1
Q ss_pred CCCeEEEEEC-cccHHHHH-HHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHH------HhhhcCCC
Q psy12466 191 YILRVLIVTP-SSLTSNWN-DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY------QTIVDTEF 262 (680)
Q Consensus 191 ~~~~~LIV~P-~sl~~nW~-~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~------~~l~~~~~ 262 (680)
..+++||||| .+|..||. ++|++|.+ .+..+.+. ......+|+|+||+.+.... ..+....|
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~--~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~ 303 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGD--ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFF 303 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCS--SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcch--hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCcc
Confidence 4579999999 77889999 88888754 22222211 12245789999999997753 23444569
Q ss_pred cEEEEcCCCCCCCCCCCCC-ccccCCCCCCceeccCCC
Q psy12466 263 DLLICDEKSLLKPPSGNSP-GNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 263 ~~vI~DEaH~lKN~~s~~~-~a~~~l~~~~r~~LTG~~ 299 (680)
++||+||||++.+.....+ ..+..+....+++|||+.
T Consensus 304 ~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP 341 (590)
T 3h1t_A 304 DLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATP 341 (590)
T ss_dssp SEEEESCCC---------CHHHHHHSTTSEEEEEESSC
T ss_pred CEEEEECCccccccchHHHHHHHHhCCcceEEEecccc
Confidence 9999999999998754444 444456667789998774
No 90
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.20 E-value=3.7e-06 Score=92.48 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 396 DLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.++..++..++|+|||+++ ++++..+...+ .++||++|. .|..|+.+++..+ .+.. ....-..
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~-------~~~lil~Ptr~La~Q~~~~l~~~----~v~~-~~~~~~~--- 71 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECARRR-------LRTLVLAPTRVVLSEMKEAFHGL----DVKF-HTQAFSA--- 71 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHTTTS----CEEE-ESSCCCC---
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC-------CeEEEEcchHHHHHHHHHHHhcC----CeEE-eccccee---
Confidence 4678999999999999996 55555454443 248999997 6778998887743 2221 1111000
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhh-hccCceEEEEcCcccccCcccHHH-HHHHhc---ccceEEEEeCCCCCC
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTI-VDTEFDLLICDEGHRLKNGKSKLY-ELMTGL---NIRKRILLSGTPLQN 542 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l-~~~~~~~vIlDEaH~~kn~~s~~~-~~l~~l---~~~~rllLTgTP~~n 542 (680)
......-+-..+...+....... .-.++++||+||||++ +...... ..+..+ .....++|||||..+
T Consensus 72 -v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 72 -HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGT 143 (440)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred -ccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCch
Confidence 11111223344444443222111 1246899999999998 3222111 112222 356789999999665
No 91
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.18 E-value=6.5e-06 Score=94.30 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=81.1
Q ss_pred CCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 396 DLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.++..|+..++|+|||.+. +.++..+...+ .++||++|. .|..|+.+++.. ..+. +....-.
T Consensus 185 ~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~-------~~vLvl~PtreLa~Qi~~~l~~----~~v~-~~~~~l~---- 248 (618)
T 2whx_A 185 KKRLTIMDLHPGAGKTKRILPSIVREALKRR-------LRTLILAPTRVVAAEMEEALRG----LPIR-YQTPAVK---- 248 (618)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHTTT----SCEE-ECCTTSS----
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC-------CeEEEEcChHHHHHHHHHHhcC----Ccee-Eecccce----
Confidence 4678999999999999984 66666665533 259999997 677888877762 2232 2221100
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCccc--HHHHHHHhc--ccceEEEEeCCCCCC
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKS--KLYELMTGL--NIRKRILLSGTPLQN 542 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s--~~~~~l~~l--~~~~rllLTgTP~~n 542 (680)
........+.++++..+...... ..-.++++||+||||++ +... .....+..+ .....++|||||-..
T Consensus 249 ~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 249 SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS 321 (618)
T ss_dssp CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchh
Confidence 11223445777888877653322 12346899999999998 2221 112222222 345679999999544
No 92
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.15 E-value=4.2e-06 Score=96.69 Aligned_cols=131 Identities=14% Similarity=0.189 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCChHHHH-HHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 396 DLEGAILADEMGLGKTLQC-IALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~a-iali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
.++..++..++|+|||+++ ++++..+...+ .++||++|. .|..|+.+.+..+ .+. +.... ..
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~-------~~~lilaPTr~La~Q~~~~l~~~----~i~-~~~~~---l~- 303 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKR-------LRTAVLAPTRVVAAEMAEALRGL----PVR-YLTPA---VQ- 303 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHTTTS----CCE-ECCC-------
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CcEEEEccHHHHHHHHHHHHhcC----Cee-eeccc---cc-
Confidence 5678999999999999995 55555545433 259999998 6779998888754 121 11110 00
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCcccccCcccHHHHHHHhc---ccceEEEEeCCCCCC
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLYELMTGL---NIRKRILLSGTPLQN 542 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l---~~~~rllLTgTP~~n 542 (680)
.......-+-+.+...+....-. ..-.++++||+||||++..........+..+ .....++|||||...
T Consensus 304 ~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~ 376 (673)
T 2wv9_A 304 REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGT 376 (673)
T ss_dssp CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCChh
Confidence 01112233445566555332221 1224689999999999821111122222222 356789999999654
No 93
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.14 E-value=1.8e-06 Score=91.28 Aligned_cols=108 Identities=10% Similarity=-0.015 Sum_probs=68.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcc-hhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNK-AEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
..++|||||. +|..+|.+++.++++...+.+....+... ..........+|+|+||+.+...... +.-..+++||+
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 4589999997 66799999999998754444333333222 11111223679999999999776543 22356899999
Q ss_pred cCCCCCCCCCCC--CCccccCCCCCC-ceeccCCC
Q psy12466 268 DEKSLLKPPSGN--SPGNDSGIPSLP-RKSDSGIG 299 (680)
Q Consensus 268 DEaH~lKN~~s~--~~~a~~~l~~~~-r~~LTG~~ 299 (680)
||||.+.+.... ..+.+..+.... .+++|++.
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 188 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNACNKDKRILLFSATM 188 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSC
T ss_pred eCchHhhhhchHHHHHHHHHhCCCCceEEEEeecc
Confidence 999999775421 122223333333 46666653
No 94
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.13 E-value=1.5e-06 Score=86.61 Aligned_cols=106 Identities=11% Similarity=0.027 Sum_probs=68.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
..++|||||. .|..+|.++++++.. ..++..++++....... ......+|+|+|++.+...... +.-..++++
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~l 170 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDK-TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLF 170 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHH-HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHH-HhccCCCEEEECHHHHHHHHhcCCcccccCCEE
Confidence 4589999997 788999999999973 34556665554322221 1224679999999999775542 222458899
Q ss_pred EEcCCCCCCCCC---CCCCccccCCCCCC-ceeccCC
Q psy12466 266 ICDEKSLLKPPS---GNSPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~---s~~~~a~~~l~~~~-r~~LTG~ 298 (680)
|+||||++-+.. ......+..+.... .+++|++
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT 207 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSAT 207 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEec
Confidence 999999996542 11122333444333 4566654
No 95
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.11 E-value=5.7e-06 Score=80.53 Aligned_cols=85 Identities=8% Similarity=0.093 Sum_probs=58.9
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
..++|||||. .|..+|.++++++.. ..++..++++..............+|+|+|++.+...... +.-..++++
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~l 150 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMI 150 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEE
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEE
Confidence 3479999997 567899999999974 3445555554433222222235678999999998665542 222468999
Q ss_pred EEcCCCCCCCC
Q psy12466 266 ICDEKSLLKPP 276 (680)
Q Consensus 266 I~DEaH~lKN~ 276 (680)
|+||||++-..
T Consensus 151 ViDEah~~~~~ 161 (206)
T 1vec_A 151 VLDEADKLLSQ 161 (206)
T ss_dssp EEETHHHHTST
T ss_pred EEEChHHhHhh
Confidence 99999998653
No 96
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.09 E-value=3.9e-06 Score=87.45 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=43.8
Q ss_pred CCCcEEEEEEecCCHHHHHHHHHHHHHHHHHh-------c------hhhHHHHHHHHHHhccCccccCCC
Q psy12466 616 LNSKRETLLVCRATPLQQSLYLRCVEYWDARA-------S------RDSHLSVTHALRKICNHPGLVQQP 672 (680)
Q Consensus 616 LP~k~e~~v~v~ms~~Q~~lY~~l~~~~~~~~-------~------~~~~l~~l~~LRqicnHP~L~~~~ 672 (680)
-|.+.|++++|+||+.|+++|+.++......+ + .....+.+++||+|||||+|+.+.
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~ 89 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDH 89 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccc
Confidence 48999999999999999999999986432211 1 124567899999999999999643
No 97
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.09 E-value=1.8e-06 Score=86.36 Aligned_cols=106 Identities=16% Similarity=0.079 Sum_probs=69.2
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh---hhcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~---l~~~~~~~v 265 (680)
..++|||||. .|..+|.++++++... .++..++++...... .......+|+|+|++.+...... +.-..+++|
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHH-HHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHH-HHhCCCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 3579999997 7889999999999854 445555554432222 11224679999999999776543 233568999
Q ss_pred EEcCCCCCCCCC--CCCCccccCCCCCC-ceeccCC
Q psy12466 266 ICDEKSLLKPPS--GNSPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~--s~~~~a~~~l~~~~-r~~LTG~ 298 (680)
|+||||++.+.. ......+..+.... .+++|++
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 211 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSAT 211 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESS
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEee
Confidence 999999987653 22233344444343 5666654
No 98
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.08 E-value=4.7e-06 Score=82.26 Aligned_cols=107 Identities=11% Similarity=0.012 Sum_probs=66.8
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCC------CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCC
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGL------TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEF 262 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~------~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~ 262 (680)
..++|||||. .|..+|.++++++... .++..++++..............+|+|+|++.+...... +.-..+
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 151 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTA 151 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcc
Confidence 3589999997 6789999999999853 344444444322222122224578999999999765542 222458
Q ss_pred cEEEEcCCCCCCCCC--CCCCccccCCCCCC-ceeccCC
Q psy12466 263 DLLICDEKSLLKPPS--GNSPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 263 ~~vI~DEaH~lKN~~--s~~~~a~~~l~~~~-r~~LTG~ 298 (680)
+++|+||||++.+.. ......+..+.... .+++|++
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 190 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSAT 190 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecC
Confidence 899999999987542 11222333444333 5566654
No 99
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.06 E-value=4.8e-06 Score=89.18 Aligned_cols=85 Identities=9% Similarity=0.157 Sum_probs=61.1
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhC---CCCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLG---LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDL 264 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~ 264 (680)
..++|||||. .|..+|.+++++|.. ..++..++++...... ........+|+|+||+.+...... +.-..+++
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 155 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKH 155 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSE
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCE
Confidence 3589999998 788999999999973 4556666655432222 222334578999999999775543 33357999
Q ss_pred EEEcCCCCCCCC
Q psy12466 265 LICDEKSLLKPP 276 (680)
Q Consensus 265 vI~DEaH~lKN~ 276 (680)
||+||||++.+.
T Consensus 156 vViDEaH~~~~~ 167 (391)
T 1xti_A 156 FILDECDKMLEQ 167 (391)
T ss_dssp EEECSHHHHTSS
T ss_pred EEEeCHHHHhhc
Confidence 999999999764
No 100
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.06 E-value=5.5e-06 Score=83.80 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=68.4
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhh---hcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l---~~~~~~~v 265 (680)
..++|||||. .|..+|.++|+++... .++..++++..............+|+|+|++.+....... .-..+++|
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 3479999997 6678999999999752 4555555544332222223356799999999997765432 23458899
Q ss_pred EEcCCCCCCCCCC--CCCccccCCCCCC-ceeccCC
Q psy12466 266 ICDEKSLLKPPSG--NSPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~s--~~~~a~~~l~~~~-r~~LTG~ 298 (680)
|+||||++.+..- ...+.+..+.... .+++|++
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT 226 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSAT 226 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESS
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEecc
Confidence 9999999876421 1223333343333 4556544
No 101
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.04 E-value=5.1e-06 Score=81.90 Aligned_cols=83 Identities=10% Similarity=0.169 Sum_probs=59.0
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC---CCCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG---LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
.++|||||. .|..+|.++++++.. ..++..++++...... ........+|+|+|++.+...... +.-..+++|
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~l 162 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 162 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEE
Confidence 489999997 778999999999973 4566666665432221 222234568999999999765542 223568999
Q ss_pred EEcCCCCCCC
Q psy12466 266 ICDEKSLLKP 275 (680)
Q Consensus 266 I~DEaH~lKN 275 (680)
|+||||++-+
T Consensus 163 ViDEah~~~~ 172 (220)
T 1t6n_A 163 ILDECDKMLE 172 (220)
T ss_dssp EEESHHHHHS
T ss_pred EEcCHHHHhc
Confidence 9999999854
No 102
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.04 E-value=2.8e-06 Score=91.06 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=66.5
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI 266 (680)
..++|||||. +|..+|.+++.++++.. ++..++++..... ........+|+|+||+.+..... .+....+++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE-DAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHH-HHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHH-HHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 4589999997 67889999999998643 3444444332211 11111257899999999876554 23335799999
Q ss_pred EcCCCCCCCCC--CCCCccccCCCCC-CceeccCC
Q psy12466 267 CDEKSLLKPPS--GNSPGNDSGIPSL-PRKSDSGI 298 (680)
Q Consensus 267 ~DEaH~lKN~~--s~~~~a~~~l~~~-~r~~LTG~ 298 (680)
+||||++.+.. ....+.+..+... ..+++|++
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 202 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 202 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEe
Confidence 99999985432 1122223333333 35666654
No 103
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.04 E-value=8e-06 Score=80.65 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=55.0
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
..++|||||. .|..+|.+++.+++... ++..++++...... .......+|+|+|++.+...... +.-..+++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED-AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH-HhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 4589999998 67789999999998543 34444443322111 11123378999999998765442 2234589999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||++.+.
T Consensus 161 iDEah~~~~~ 170 (224)
T 1qde_A 161 LDEADEMLSS 170 (224)
T ss_dssp EETHHHHHHT
T ss_pred EcChhHHhhh
Confidence 9999998654
No 104
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.00 E-value=4.9e-06 Score=83.36 Aligned_cols=107 Identities=7% Similarity=0.012 Sum_probs=62.8
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
..++|||||. .|..+|.++++++.... ++..++++...... ........+|+|+|++.+...... +.-..+++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 4589999997 67889999999998533 33444443322111 122223478999999998765442 233458999
Q ss_pred EEcCCCCCCCCC--CCCCccccCCCCCCc-eeccCC
Q psy12466 266 ICDEKSLLKPPS--GNSPGNDSGIPSLPR-KSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~--s~~~~a~~~l~~~~r-~~LTG~ 298 (680)
|+||||++-+.. ......+..+....+ +++|.+
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 999999885432 223333444444443 445543
No 105
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.92 E-value=1.5e-05 Score=85.68 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=58.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCCe--eEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTRM--CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
..++|||||. .|..+|.++++++++...+ ..++++..............+|+|+|++.+...... ..-..+++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 3479999997 6788999999999864433 344333322222222335678999999998765442 2235689999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||++.+.
T Consensus 169 iDEaH~~~~~ 178 (400)
T 1s2m_A 169 MDEADKMLSR 178 (400)
T ss_dssp EESHHHHSSH
T ss_pred EeCchHhhhh
Confidence 9999988654
No 106
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.90 E-value=8e-06 Score=88.12 Aligned_cols=107 Identities=8% Similarity=0.023 Sum_probs=67.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCCC--eeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLTR--MCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~v 265 (680)
..++|||||. .|..+|.+++++++.... +....++...... ........+|+|+|++.+...... +....+++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 4579999997 578899999999974333 3333333221111 122235678999999998765543 334568999
Q ss_pred EEcCCCCCCCCC--CCCCccccCCCCCC-ceeccCC
Q psy12466 266 ICDEKSLLKPPS--GNSPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~--s~~~~a~~~l~~~~-r~~LTG~ 298 (680)
|+||||++.+.. ......+..+.... .+++|++
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 999999986543 22333444454444 4555544
No 107
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.90 E-value=9.7e-06 Score=87.59 Aligned_cols=107 Identities=9% Similarity=-0.031 Sum_probs=67.3
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhCCCCeeE--EeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLGLTRMCP--YHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
..++|||||.. |..+|.+++.+|.....+.+ ++++..............+|+|+|++.+...... +....+++||
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 45899999974 78899999999985444433 3333322221112223568999999998765543 3345689999
Q ss_pred EcCCCCCCCCCCC--CCccccCCCCC-CceeccCC
Q psy12466 267 CDEKSLLKPPSGN--SPGNDSGIPSL-PRKSDSGI 298 (680)
Q Consensus 267 ~DEaH~lKN~~s~--~~~a~~~l~~~-~r~~LTG~ 298 (680)
+||||++.+..-. ....+..+... ..+++|++
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 219 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT 219 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred EccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcC
Confidence 9999998865421 22223333333 35566655
No 108
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.89 E-value=3.6e-05 Score=88.18 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=52.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHH-HHHHhcCCCCCCccceEEEEecc-chHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI-WTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDE 450 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali-~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E 450 (680)
+.||+|++.+..+.+.+. .++.+++...+|+|||+..+.-+ ..+...+ .+++|++|+ .+..|+.++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~-----~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~-------~kvli~t~T~~l~~Qi~~e 70 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQ-----KSYGVALESPTGSGKTIMALKSALQYSSERK-------LKVLYLVRTNSQEEQVIKE 70 (620)
T ss_dssp --CHHHHHHHHHHHHHHH-----HSSEEEEECCTTSCHHHHHHHHHHHHHHHHT-------CEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-----cCCCEEEECCCCCCHHHHHHHHHHHhhhhcC-------CeEEEECCCHHHHHHHHHH
Confidence 468999999887766532 35778999999999999876543 3333322 369999997 677999999
Q ss_pred HHHHh
Q psy12466 451 FKKWL 455 (680)
Q Consensus 451 ~~~~~ 455 (680)
+.++.
T Consensus 71 l~~l~ 75 (620)
T 4a15_A 71 LRSLS 75 (620)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 109
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.87 E-value=9.9e-05 Score=86.71 Aligned_cols=149 Identities=17% Similarity=0.103 Sum_probs=84.5
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKW 454 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~ 454 (680)
+.|++++..++. .+...++..++|.|||.+.-.++........ ....++|++|. .+..|+.+.+.+.
T Consensus 96 ~~q~~~i~~~l~--------~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g~~ilvl~P~r~La~q~~~~l~~~ 163 (773)
T 2xau_A 96 HAQRDEFLKLYQ--------NNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----ENTQVACTQPRRVAAMSVAQRVAEE 163 (773)
T ss_dssp GGGHHHHHHHHH--------HCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCeEEEECCCCCCHHHHHHHHHHHhccccC----CCceEEecCchHHHHHHHHHHHHHH
Confidence 367766655544 2356899999999999954444322211110 01358999997 5557777777666
Q ss_pred hCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHh-hhccCceEEEEcCccc-ccCcc--cHHHHHHHhc-cc
Q psy12466 455 LGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEGHR-LKNGK--SKLYELMTGL-NI 529 (680)
Q Consensus 455 ~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~-l~~~~~~~vIlDEaH~-~kn~~--s~~~~~l~~l-~~ 529 (680)
.+. .+....+.. .+.. .......+|+++|.+.+.+.... ..-.++++||+||+|. .-+.. -...+.+... ..
T Consensus 164 ~~~-~v~~~vG~~-i~~~-~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~ 240 (773)
T 2xau_A 164 MDV-KLGEEVGYS-IRFE-NKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD 240 (773)
T ss_dssp TTC-CBTTTEEEE-ETTE-EECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred hCC-chhheecce-eccc-cccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC
Confidence 542 111111110 0000 01123578999999988765432 2234689999999995 22211 1112222222 34
Q ss_pred ceEEEEeCCC
Q psy12466 530 RKRILLSGTP 539 (680)
Q Consensus 530 ~~rllLTgTP 539 (680)
...++||||+
T Consensus 241 ~~iIl~SAT~ 250 (773)
T 2xau_A 241 LKIIIMSATL 250 (773)
T ss_dssp CEEEEEESCS
T ss_pred ceEEEEeccc
Confidence 5679999999
No 110
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.82 E-value=2.2e-05 Score=79.20 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=58.6
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
.++|||||. .|..+|.++++++.... ++..++++..............+|+|+|++.+...... +.-..+++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 489999997 77899999999998543 34444444433222222234678999999999776543 22245789999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 181 DEah~~~~~ 189 (253)
T 1wrb_A 181 DEADRMLDM 189 (253)
T ss_dssp ETHHHHHHT
T ss_pred eCHHHHHhC
Confidence 999998654
No 111
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.71 E-value=0.00026 Score=82.30 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=86.3
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-H---HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-T---SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l---~qW~~ 449 (680)
..|-|..|+--+++ |-|....+|.|||+++..-+......+ ..++||||+-- . .+|..
T Consensus 80 Pt~VQ~~~ip~Llq-----------G~IaeakTGeGKTLvf~Lp~~L~aL~G-------~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 80 HFDVQLIGGAVLHE-----------GKIAEMKTGEGKTLVATLAVALNALTG-------KGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp CCHHHHHHHHHHHT-----------TSEEECCSTHHHHHHHHHHHHHHHTTC-------SCCEEEESSHHHHHHHHHHHH
T ss_pred CcHHHHhhcccccC-----------CceeeccCCCchHHHHHHHHHHHHHhC-------CCEEEEeCCHHHHHHHHHHHH
Confidence 45668877765542 237788999999997644332222222 13899999854 4 45777
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-HHHHh--------hhcc---CceEEEEcCcccccCcc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-RAYQT--------IVDT---EFDLLICDEGHRLKNGK 517 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-~~~~~--------l~~~---~~~~vIlDEaH~~kn~~ 517 (680)
.+.++++ +++.+..+.......... ...+|++.|...+. ..+.. +... ...++|+||+|.+-..
T Consensus 142 ~l~~~lG-Lsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD- 217 (997)
T 2ipc_A 142 PVYRGLG-LSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID- 217 (997)
T ss_dssp HHHHTTT-CCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS-
T ss_pred HHHHhcC-CeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh-
Confidence 7777665 455555444333222222 24799999998883 22211 1223 6789999999964211
Q ss_pred cHHHHHHHhcccceEEEEeCCCCCCCHHHHHHH
Q psy12466 518 SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 518 s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sl 550 (680)
.+..-+++|| |.... ..+|..
T Consensus 218 ----------eartPLIISg-p~~~~-~~lY~~ 238 (997)
T 2ipc_A 218 ----------EARTPLIISG-PAEKA-TDLYYK 238 (997)
T ss_dssp ----------STTSCEEEEE-SCSSC-HHHHHH
T ss_pred ----------CCCCCeeeeC-CCccc-hHHHHH
Confidence 2233489999 88776 454443
No 112
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.68 E-value=3.4e-05 Score=80.44 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=58.0
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
.++|||||. +|..+|.+++++|.+.. ++..++++... ..........+|+|+||+.+...... +.-..|++||+
T Consensus 57 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 57 MKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPY-KAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCH-HHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcch-HHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEE
Confidence 578999997 67899999999998543 44444443322 11112223489999999999876542 22356899999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++.+.
T Consensus 136 DEah~~~~~ 144 (337)
T 2z0m_A 136 DEADLMFEM 144 (337)
T ss_dssp ESHHHHHHT
T ss_pred EChHHhhcc
Confidence 999998654
No 113
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.66 E-value=7.1e-05 Score=79.80 Aligned_cols=82 Identities=9% Similarity=0.112 Sum_probs=56.4
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEEc
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICD 268 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~D 268 (680)
..++|||||.. |..+|.++++++.....+.+....+...... .....+|+|+|++.+...... +.-..+++||+|
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 45899999976 7789999999997544443333332221111 123578999999999765542 223569999999
Q ss_pred CCCCCCC
Q psy12466 269 EKSLLKP 275 (680)
Q Consensus 269 EaH~lKN 275 (680)
|||++.+
T Consensus 153 Eah~~~~ 159 (395)
T 3pey_A 153 EADNMLD 159 (395)
T ss_dssp THHHHHH
T ss_pred ChhhhcC
Confidence 9998875
No 114
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.58 E-value=6e-05 Score=74.61 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=56.5
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHh-CCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
..++|||||.. |..+|.++++++. ...++..++++..............+|+|+|++.+...... +.-..+++||+
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 45799999975 6789999999996 33455555554433222222235579999999999765432 22245899999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 174 DEah~~~~~ 182 (228)
T 3iuy_A 174 DEADKMLDM 182 (228)
T ss_dssp CCHHHHHHT
T ss_pred ECHHHHhcc
Confidence 999987654
No 115
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.55 E-value=0.0001 Score=73.76 Aligned_cols=83 Identities=22% Similarity=0.187 Sum_probs=55.5
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCee--EEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHhh----hcCCCcE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMC--PYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDL 264 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~l----~~~~~~~ 264 (680)
.++|||||. .|..+|.+++.+++....+. .++++...... ........+|+|+|++.+......- .-..+++
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 479999997 56789999999998643333 33332211111 1122345789999999997765432 2245889
Q ss_pred EEEcCCCCCCC
Q psy12466 265 LICDEKSLLKP 275 (680)
Q Consensus 265 vI~DEaH~lKN 275 (680)
||+||||++-.
T Consensus 179 lViDEah~~~~ 189 (245)
T 3dkp_A 179 LVVDESDKLFE 189 (245)
T ss_dssp EEESSHHHHHH
T ss_pred EEEeChHHhcc
Confidence 99999999854
No 116
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.53 E-value=0.00029 Score=81.23 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
.++..++..++|.|||..++..+. ... ..+|++|. .|..|..+.+.+. +..+....|.......
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~---~~~--------~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~iv~-- 218 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYF---SAK--------SGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERVTVQ-- 218 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH---HSS--------SEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEECCS--
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH---hcC--------CeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeEEec--
Confidence 446789999999999995544332 222 25999997 6668998888875 3455555544332110
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc--cHHHHHHHhcc--cceEEEEeCC
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK--SKLYELMTGLN--IRKRILLSGT 538 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~--s~~~~~l~~l~--~~~rllLTgT 538 (680)
......++++++.+.+. ....+++||+||||++.+.. ......+..+. ..+.+++|+|
T Consensus 219 TpGr~~~il~~T~e~~~------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 219 PNGKQASHVSCTVEMCS------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp TTCCCCSEEEEEGGGCC------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred CCCcccceeEecHhHhh------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 01123678888876542 23467999999999985432 33345555554 3345777787
No 117
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.50 E-value=0.00059 Score=79.48 Aligned_cols=120 Identities=21% Similarity=0.245 Sum_probs=74.7
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~ 449 (680)
.+|-|..|+--++ .|.|....+|.|||+.+..-+......+ ..++||||+ .|. .+|..
T Consensus 112 P~~VQ~~~ip~Ll-----------~G~Iaem~TGeGKTLa~~LP~~l~aL~g-------~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 112 PFDVQVMGAAALH-----------LGNVAEMKTGEGKTLTCVLPAYLNALAG-------NGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp CCHHHHHHHHHHH-----------TTEEEECCTTSCHHHHTHHHHHHHHTTT-------SCEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhHh-----------cCCEEEecCCCccHHHHHHHHHHHHHhC-------CCeEEEeCCHHHHHHHHHHHH
Confidence 3445666665443 2448889999999997543332111222 249999998 444 66888
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-HHHH--------hhhccCceEEEEcCccccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-RAYQ--------TIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-~~~~--------~l~~~~~~~vIlDEaH~~k 514 (680)
.+.+|++ +++.++.+..........+ ..+|++.|...+. .... .+....+.++|+|||+.+-
T Consensus 174 ~l~~~lG-Lsv~~i~gg~~~~~r~~~y--~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 174 RVHRFLG-LQVGVILATMTPDERRVAY--NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp HHHHHTT-CCEEECCTTCCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred HHHhhcC-CeEEEEeCCCCHHHHHHhc--CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 8888876 4555554443332222222 4789999998873 2111 2333578999999999864
No 118
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.49 E-value=7e-05 Score=81.12 Aligned_cols=82 Identities=12% Similarity=0.245 Sum_probs=60.7
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC-CCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG-LTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI 266 (680)
.++|||||. .|..+|.++|++|++ ..++..++++...... ........+|+|+|.+.+......+....+++||
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iV 144 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVF 144 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEE
Confidence 579999997 678999999999976 3455666555432111 1222344799999999998776666667899999
Q ss_pred EcCCCCCC
Q psy12466 267 CDEKSLLK 274 (680)
Q Consensus 267 ~DEaH~lK 274 (680)
+||||.+-
T Consensus 145 iDEaH~~~ 152 (414)
T 3oiy_A 145 VDDVDAVL 152 (414)
T ss_dssp ESCHHHHH
T ss_pred EeChHhhh
Confidence 99999763
No 119
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.49 E-value=0.00011 Score=79.32 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=58.5
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLIC 267 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~ 267 (680)
.++|||||. .|..+|.+++++++... ++..++++..............+|+|+|++.+...... +.-..+++||+
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVL 181 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEE
Confidence 479999997 67889999999998543 44444444332222222234578999999999776543 23356899999
Q ss_pred cCCCCCCCC
Q psy12466 268 DEKSLLKPP 276 (680)
Q Consensus 268 DEaH~lKN~ 276 (680)
||||++-+.
T Consensus 182 DEah~~~~~ 190 (417)
T 2i4i_A 182 DEADRMLDM 190 (417)
T ss_dssp SSHHHHHHT
T ss_pred EChhHhhcc
Confidence 999997654
No 120
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.48 E-value=0.00047 Score=79.40 Aligned_cols=70 Identities=29% Similarity=0.391 Sum_probs=54.4
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
+...|-+.|++||...+.. ..-.|+.-.+|+|||.+.+.++..+...+. ++||++|+ ..+.+-.
T Consensus 186 ~~~~LN~~Q~~AV~~al~~--------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~-------~ILv~a~TN~AvD~i~ 250 (646)
T 4b3f_X 186 FNTCLDTSQKEAVLFALSQ--------KELAIIHGPPGTGKTTTVVEIILQAVKQGL-------KVLCCAPSNIAVDNLV 250 (646)
T ss_dssp SSTTCCHHHHHHHHHHHHC--------SSEEEEECCTTSCHHHHHHHHHHHHHHTTC-------CEEEEESSHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcC--------CCceEEECCCCCCHHHHHHHHHHHHHhCCC-------eEEEEcCchHHHHHHH
Confidence 4567999999999987642 234788889999999999999988887653 59999997 4557766
Q ss_pred HHHHHH
Q psy12466 449 DEFKKW 454 (680)
Q Consensus 449 ~E~~~~ 454 (680)
+.+...
T Consensus 251 erL~~~ 256 (646)
T 4b3f_X 251 ERLALC 256 (646)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 666553
No 121
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.47 E-value=3e-05 Score=93.44 Aligned_cols=104 Identities=12% Similarity=0.043 Sum_probs=67.8
Q ss_pred CCeEEEEEC-cccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhh----hcCCCcEEE
Q psy12466 192 ILRVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI----VDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P-~sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l----~~~~~~~vI 266 (680)
..++||||| ..|..||.++|.+|.+. .+..+.+.............+|+|+||..+....... .-..+++||
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~---~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvI 406 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPD---SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFI 406 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTT---CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEE
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhccc---ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEE
Confidence 469999999 77889999999999863 1111111112222222346789999999998764421 112689999
Q ss_pred EcCCCCCCCCCCCCCccc-cCCCCCCceeccCCCC
Q psy12466 267 CDEKSLLKPPSGNSPGND-SGIPSLPRKSDSGIGS 300 (680)
Q Consensus 267 ~DEaH~lKN~~s~~~~a~-~~l~~~~r~~LTG~~~ 300 (680)
+|||||..... ..+.+ ..+....+++|||+..
T Consensus 407 iDEAHrs~~~~--~~~~I~~~~p~a~~lgfTATP~ 439 (1038)
T 2w00_A 407 FDECHRSQFGE--AQKNLKKKFKRYYQFGFTGTPI 439 (1038)
T ss_dssp EESCCTTHHHH--HHHHHHHHCSSEEEEEEESSCC
T ss_pred EEccchhcchH--HHHHHHHhCCcccEEEEeCCcc
Confidence 99999975321 22333 3355567889998764
No 122
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.46 E-value=0.00011 Score=80.40 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=60.5
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCC--CCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
..++|||||+ .|..||.++++++... .++..++++..............+|+|+|++.+...... +.-..+++||
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 3489999997 5788999999999853 345555555433222222235679999999999766542 2235689999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||++-+.
T Consensus 209 lDEah~~~~~ 218 (434)
T 2db3_A 209 LDEADRMLDM 218 (434)
T ss_dssp EETHHHHTST
T ss_pred EccHhhhhcc
Confidence 9999998765
No 123
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.45 E-value=0.00037 Score=80.89 Aligned_cols=121 Identities=18% Similarity=0.105 Sum_probs=75.4
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hH---HHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LT---SNWN 448 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll---~qW~ 448 (680)
..+|-|..|+--++ .|.|.-..+|.|||+.++.-+......+ ..++||||+- |. .+|.
T Consensus 74 ~p~~VQ~~~i~~ll-----------~G~Iaem~TGsGKTlaf~LP~l~~~l~g-------~~vlVltPTreLA~Q~~e~~ 135 (853)
T 2fsf_A 74 RHFDVQLLGGMVLN-----------ERCIAEMRTGEGKTLTATLPAYLNALTG-------KGVHVVTVNDYLAQRDAENN 135 (853)
T ss_dssp CCCHHHHHHHHHHH-----------SSEEEECCTTSCHHHHHHHHHHHHHTTS-------SCCEEEESSHHHHHHHHHHH
T ss_pred CCChHHHhhccccc-----------CCeeeeecCCchHHHHHHHHHHHHHHcC-------CcEEEEcCCHHHHHHHHHHH
Confidence 35567877776553 2337778999999987644332222222 2389999984 44 5577
Q ss_pred HHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-HHHH--------hhhccCceEEEEcCccccc
Q psy12466 449 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-RAYQ--------TIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 449 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-~~~~--------~l~~~~~~~vIlDEaH~~k 514 (680)
..+.++++ +++.++.+.......... ...+|++.|...+. .... .+......++|+||||++-
T Consensus 136 ~~l~~~lg-l~v~~i~GG~~~~~r~~~--~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 136 RPLFEFLG-LTVGINLPGMPAPAKREA--YAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp HHHHHHTT-CCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred HHHHHhcC-CeEEEEeCCCCHHHHHHh--cCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 77777765 455555544333222222 24789999998873 2221 1333578999999999764
No 124
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.36 E-value=0.00038 Score=80.96 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=74.9
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chH---HHHHH
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLT---SNWND 449 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll---~qW~~ 449 (680)
..|-|..|+--+++ |.|....+|.|||+.+..-+......+ ..++||||+ .|. .+|..
T Consensus 84 pt~VQ~~~ip~ll~-----------G~Iaea~TGeGKTlaf~LP~~l~aL~g-------~~vlVltptreLA~qd~e~~~ 145 (844)
T 1tf5_A 84 PFKVQLMGGVALHD-----------GNIAEMKTGEGKTLTSTLPVYLNALTG-------KGVHVVTVNEYLASRDAEQMG 145 (844)
T ss_dssp CCHHHHHHHHHHHT-----------TSEEECCTTSCHHHHHHHHHHHHHTTS-------SCEEEEESSHHHHHHHHHHHH
T ss_pred CcHHHHHhhHHHhC-----------CCEEEccCCcHHHHHHHHHHHHHHHcC-------CCEEEEeCCHHHHHHHHHHHH
Confidence 45567777655532 238889999999997654332222222 248999998 444 45777
Q ss_pred HHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHH-----HHH----HhhhccCceEEEEcCccccc
Q psy12466 450 EFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-----RAY----QTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 450 E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~-----~~~----~~l~~~~~~~vIlDEaH~~k 514 (680)
.+.+|++ +++.++.+.......... ...+|++.|...+. ..+ ..+......++|+|||+.+-
T Consensus 146 ~l~~~lg-l~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 146 KIFEFLG-LTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp HHHHHTT-CCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred HHHhhcC-CeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 7888775 455555444333222222 24789999998883 221 12333568899999999863
No 125
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.28 E-value=0.00024 Score=72.19 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCeEEEEECc-ccHHHHHHHHHHHhCCC--CeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhh---hcCCCcEE
Q psy12466 192 ILRVLIVTPS-SLTSNWNDEFKKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI---VDTEFDLL 265 (680)
Q Consensus 192 ~~~~LIV~P~-sl~~nW~~E~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l---~~~~~~~v 265 (680)
..++|||||. .|..+|.+++++++... .+..+.++..............+|+|+|.+.+....... .-..+++|
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 3479999997 67789999999998533 334444433222222212234789999999997655432 22458999
Q ss_pred EEcCCCCCCCC
Q psy12466 266 ICDEKSLLKPP 276 (680)
Q Consensus 266 I~DEaH~lKN~ 276 (680)
|+||||++-+.
T Consensus 206 ViDEah~l~~~ 216 (262)
T 3ly5_A 206 VIDEADRILDV 216 (262)
T ss_dssp EECSHHHHHHT
T ss_pred EEcChHHHhhh
Confidence 99999997653
No 126
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.25 E-value=0.00026 Score=70.81 Aligned_cols=85 Identities=12% Similarity=0.005 Sum_probs=57.8
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhC--CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEE
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLG--LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLI 266 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI 266 (680)
..++|||||.. |..+|.+++++++. ..++..++++..............+|+|+|.+.+...... +.-..++++|
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLV 181 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEE
Confidence 45799999964 67899999999863 2455555554433222222234578999999999765542 2234688999
Q ss_pred EcCCCCCCCC
Q psy12466 267 CDEKSLLKPP 276 (680)
Q Consensus 267 ~DEaH~lKN~ 276 (680)
+||||++-+.
T Consensus 182 iDEah~l~~~ 191 (242)
T 3fe2_A 182 LDEADRMLDM 191 (242)
T ss_dssp ETTHHHHHHT
T ss_pred EeCHHHHhhh
Confidence 9999997653
No 127
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.23 E-value=0.00036 Score=74.89 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=54.5
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh---hhcCCCcEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~---l~~~~~~~v 265 (680)
.++|||||.. |..+|.++++++.. ...+....++...... .....+|+|+|++.+...... +.-..+++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 4799999976 56789888988863 3444444443322111 124568999999999776543 222468999
Q ss_pred EEcCCCCCCC
Q psy12466 266 ICDEKSLLKP 275 (680)
Q Consensus 266 I~DEaH~lKN 275 (680)
|+||||++-.
T Consensus 173 ViDEah~~~~ 182 (412)
T 3fht_A 173 VLDEADVMIA 182 (412)
T ss_dssp EEETHHHHHS
T ss_pred EEeCHHHHhh
Confidence 9999998754
No 128
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.15 E-value=0.00037 Score=77.87 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=55.5
Q ss_pred CCeEEEEECcc-cHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH--hhhcCCCcEEEEc
Q psy12466 192 ILRVLIVTPSS-LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ--TIVDTEFDLLICD 268 (680)
Q Consensus 192 ~~~~LIV~P~s-l~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~--~l~~~~~~~vI~D 268 (680)
..++|||||.. |..+|.++|+++++...+....+.+...... .....+|+|+|++.+..... .+.-..+++||+|
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiD 266 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG--AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLD 266 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc--ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEe
Confidence 34899999976 7899999999998655555444433222221 12367899999999876543 2233569999999
Q ss_pred CCCCCCC
Q psy12466 269 EKSLLKP 275 (680)
Q Consensus 269 EaH~lKN 275 (680)
|+|++-.
T Consensus 267 EaH~~~~ 273 (508)
T 3fho_A 267 EADNMLD 273 (508)
T ss_dssp CHHHHTT
T ss_pred chhhhcc
Confidence 9999865
No 129
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.13 E-value=0.0018 Score=73.28 Aligned_cols=131 Identities=20% Similarity=0.199 Sum_probs=82.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
..|-+.|++++..+.. .+..++.-..|+|||.++.+++..+...+. ++++++|+........+.
T Consensus 188 ~~L~~~Q~~Av~~~~~---------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~-------~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAG---------HRLVVLTGGPGTGKSTTTKAVADLAESLGL-------EVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTCCHHHHHHHHHHTT---------CSEEEEECCTTSCHHHHHHHHHHHHHHTTC-------CEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---------CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------eEEEecCcHHHHHHhHhh
Confidence 4578899999987742 367888999999999998888887776552 589999987665544442
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccce
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~ 531 (680)
. +. ....++. ...... . .+. ...-....+++||+||||.+. .......+..+....
T Consensus 252 ~---~~-~a~Tih~--------ll~~~~-~----~~~-----~~~~~~~~~dvlIIDEasml~--~~~~~~Ll~~~~~~~ 307 (574)
T 3e1s_A 252 T---GR-TASTVHR--------LLGYGP-Q----GFR-----HNHLEPAPYDLLIVDEVSMMG--DALMLSLLAAVPPGA 307 (574)
T ss_dssp H---TS-CEEEHHH--------HTTEET-T----EES-----CSSSSCCSCSEEEECCGGGCC--HHHHHHHHTTSCTTC
T ss_pred h---cc-cHHHHHH--------HHcCCc-c----hhh-----hhhcccccCCEEEEcCccCCC--HHHHHHHHHhCcCCC
Confidence 1 10 1111100 000000 0 000 000112368999999999883 334444555567778
Q ss_pred EEEEeCCCCCC
Q psy12466 532 RILLSGTPLQN 542 (680)
Q Consensus 532 rllLTgTP~~n 542 (680)
++++.|-|-|.
T Consensus 308 ~lilvGD~~QL 318 (574)
T 3e1s_A 308 RVLLVGDTDQL 318 (574)
T ss_dssp EEEEEECTTSC
T ss_pred EEEEEeccccc
Confidence 99999999884
No 130
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.04 E-value=0.0024 Score=73.18 Aligned_cols=148 Identities=16% Similarity=0.226 Sum_probs=89.1
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-HHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-TSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~E 450 (680)
..|.+.|++++..++. ....++.-.+|+|||.++..++..+.... ..++||++|+.. +.+-.+.
T Consensus 179 ~~ln~~Q~~av~~~l~---------~~~~li~GppGTGKT~~~~~~i~~l~~~~------~~~ilv~a~tn~A~~~l~~~ 243 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLARQG------NGPVLVCAPSNIAVDQLTEK 243 (624)
T ss_dssp CCCCHHHHHHHHHHHT---------CSEEEEECCTTSCHHHHHHHHHHHHHTSS------SCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---------CCCeEEECCCCCCHHHHHHHHHHHHHHcC------CCeEEEEeCcHHHHHHHHHH
Confidence 4588999999987643 24578888999999999988888776532 136999999854 4555555
Q ss_pred HHHHhCCCCeeEeecCCcc----------------------h------------------hhhh---------hhcCCCC
Q psy12466 451 FKKWLGLTRMCPYHVNQKN----------------------K------------------AEDY---------VYSRVSP 481 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~----------------------~------------------~~~~---------~~~~~~~ 481 (680)
+.+.. .++.-+....+. . ...+ ......+
T Consensus 244 l~~~~--~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (624)
T 2gk6_A 244 IHQTG--LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNAD 321 (624)
T ss_dssp HHTTT--CCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhcC--CeEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55431 111111110000 0 0000 0113456
Q ss_pred EEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCC
Q psy12466 482 VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 482 vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n 542 (680)
|+++|...+.. ..+....|++||+|||.....+. ..+..+....+++|-|=|.|-
T Consensus 322 vI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 322 VICCTCVGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp EEEEETGGGGC--GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred EEEEcChhhcc--hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhcc
Confidence 77777655432 23455689999999996654332 122222345689999998874
No 131
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00087 Score=80.89 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=66.2
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh--hhcCCCcEEEEcC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT--IVDTEFDLLICDE 269 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~--l~~~~~~~vI~DE 269 (680)
.++||+||. .|..+|.++|.++++ ++..+.|+... ....+|+|+|++.++..... ..-..+++||+||
T Consensus 130 ~rvL~l~PtkaLa~Q~~~~l~~~~~--~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDE 200 (1010)
T 2xgj_A 130 QRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDE 200 (1010)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHS--CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEET
T ss_pred CeEEEECChHHHHHHHHHHHHHHhC--CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEec
Confidence 589999997 788999999999997 56666665422 13468999999999765432 1224588999999
Q ss_pred CCCCCCCCCC--CCccccCCCCCC-ceeccCC
Q psy12466 270 KSLLKPPSGN--SPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 270 aH~lKN~~s~--~~~a~~~l~~~~-r~~LTG~ 298 (680)
+|++.+..-. ....+..+.... .++||.+
T Consensus 201 aH~l~d~~rg~~~e~il~~l~~~~~il~LSAT 232 (1010)
T 2xgj_A 201 VHYMRDKERGVVWEETIILLPDKVRYVFLSAT 232 (1010)
T ss_dssp GGGGGCTTTHHHHHHHHHHSCTTCEEEEEECC
T ss_pred hhhhcccchhHHHHHHHHhcCCCCeEEEEcCC
Confidence 9999876321 222333344333 4556544
No 132
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.99 E-value=0.0017 Score=76.01 Aligned_cols=100 Identities=9% Similarity=0.020 Sum_probs=62.8
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCC--CCeeEEeecCCcchhh----hcccCCCCEEEEehhHHHHHHHhhhcCCCcEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGL--TRMCPYHVNQKNKAED----YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~v 265 (680)
.++||+||+ .|..+|.++|.+|++. .++..++++....... .......+|+|+|++.+.. .+.-.++++|
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---~~~~~~l~lV 494 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE---DVHFKNLGLV 494 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH---CCCCSCCCEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh---hhhccCCceE
Confidence 478999998 5678999999999963 4555555554332211 1233468999999998743 2334568999
Q ss_pred EEcCCCCCCCCCCCCCccccCC-CCCCceeccCC
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSGI-PSLPRKSDSGI 298 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~l-~~~~r~~LTG~ 298 (680)
|+||+|++.... ...+... .....+++|.+
T Consensus 495 VIDEaHr~g~~q---r~~l~~~~~~~~vL~mSAT 525 (780)
T 1gm5_A 495 IIDEQHRFGVKQ---REALMNKGKMVDTLVMSAT 525 (780)
T ss_dssp EEESCCCC--------CCCCSSSSCCCEEEEESS
T ss_pred EecccchhhHHH---HHHHHHhCCCCCEEEEeCC
Confidence 999999984332 1222222 23446666654
No 133
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.95 E-value=0.00081 Score=76.56 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=56.6
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhh----c--ccCCCCEEEEehhHHHH---HHHh----hh
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY----V--YSRVSPVLIISYEMLIR---AYQT----IV 258 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~V~itsYe~l~~---~~~~----l~ 258 (680)
.++|||+|. +|+.+|.+++.++ + .++..++++........ . .....+|+++|++.+.. ..+. +.
T Consensus 85 g~~lVisP~~~L~~q~~~~l~~~-g-i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 85 GFTLVICPLISLMEDQLMVLKQL-G-ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHH-T-CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHhc-C-CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 479999996 7788999999998 2 45555555443221111 1 23567899999998742 2222 23
Q ss_pred cCCCcEEEEcCCCCCCCCC
Q psy12466 259 DTEFDLLICDEKSLLKPPS 277 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN~~ 277 (680)
...+++||+||||.+-.+.
T Consensus 163 ~~~i~~iViDEAH~is~~g 181 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWG 181 (591)
T ss_dssp TTCEEEEEEETGGGGSTTC
T ss_pred ccCCcEEEEECcccccccc
Confidence 3579999999999987653
No 134
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.92 E-value=0.00089 Score=75.08 Aligned_cols=105 Identities=16% Similarity=0.102 Sum_probs=68.3
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHH--HHHhhhcCCCcEE
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIR--AYQTIVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~--~~~~l~~~~~~~v 265 (680)
.++|||+|. +|+.+|.++++++. .++..+++....... ........+|+++|+|.+.. ..+.+....+++|
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~g--i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANG--VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTT--CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred CCEEEECChHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 478999996 77789999999863 455555554332111 12233567899999999853 2334555789999
Q ss_pred EEcCCCCCCCCCCCC-------CccccCCCCCCceeccCCC
Q psy12466 266 ICDEKSLLKPPSGNS-------PGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 266 I~DEaH~lKN~~s~~-------~~a~~~l~~~~r~~LTG~~ 299 (680)
|+||||.+..+.... ......+.....++||++.
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 184 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 184 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCC
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 999999997654321 2222334445577777665
No 135
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0036 Score=73.61 Aligned_cols=147 Identities=14% Similarity=0.225 Sum_probs=88.8
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch-HHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL-TSNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~E 450 (680)
..|.+.|++|+..++. ..-.++.-.+|+|||.++..++..+.... ..++||++|+.. +.+-.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~---------~~~~lI~GppGTGKT~~i~~~i~~l~~~~------~~~ILv~a~tn~A~d~l~~r 423 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLSKIH------KDRILVCAPSNVAVDHLAAK 423 (802)
T ss_dssp CCCCHHHHHHHHHHTT---------CSEEEEECSTTSSHHHHHHHHHHHHHHHH------CCCEEEEESSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhc---------CCCEEEECCCCCCHHHHHHHHHHHHHhCC------CCeEEEEcCcHHHHHHHHHH
Confidence 4688999999987642 24578889999999999988887766531 135999999854 4666666
Q ss_pred HHHHhCCCCeeEeecCCcc---------------------------------------hhh---------hhhhcCCCCE
Q psy12466 451 FKKWLGLTRMCPYHVNQKN---------------------------------------KAE---------DYVYSRVSPV 482 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~---------------------------------------~~~---------~~~~~~~~~v 482 (680)
+.+.. .++.-+...... ... ........+|
T Consensus 424 L~~~g--~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~V 501 (802)
T 2xzl_A 424 LRDLG--LKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADV 501 (802)
T ss_dssp HHHTT--CCEEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHhhC--ccEEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCE
Confidence 65531 111111100000 000 0001134567
Q ss_pred EEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCC
Q psy12466 483 LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 483 vI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n 542 (680)
+++|...+.. ..+.. .|++||+|||+.+.... ..+..+....+++|-|=|.|-
T Consensus 502 I~~T~~~~~~--~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 502 VCCTCVGAGD--KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp EEEETTGGGC--TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred EEechhhcCh--HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCcccc
Confidence 7777665431 22334 89999999998763221 122233445789999998874
No 136
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.79 E-value=0.0055 Score=67.41 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=81.2
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
..|-+-|++++..+...+. .+.+..++.-..|+|||..+.+++..+...+. .++++++|+..... ++
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~----~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~------~~il~~a~T~~Aa~---~l 90 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIK----EKKHHVTINGPAGTGATTLTKFIIEALISTGE------TGIILAAPTHAAKK---IL 90 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHH----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC------CCEEEEESSHHHHH---HH
T ss_pred ccCCHHHHHHHHHHHHHHh----cCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC------ceEEEecCcHHHHH---HH
Confidence 4588999999998766432 22347888899999999999999988887653 35899999865432 22
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccce
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~ 531 (680)
....+ ..+..+|..-...... ... ...+... .......++++|+||+|.+. .......+..+....
T Consensus 91 ~~~~~-~~~~T~h~~~~~~~~~---~~~-~~~~~~~-------~~~~~~~~~~iiiDE~~~~~--~~~~~~l~~~~~~~~ 156 (459)
T 3upu_A 91 SKLSG-KEASTIHSILKINPVT---YEE-NVLFEQK-------EVPDLAKCRVLICDEVSMYD--RKLFKILLSTIPPWC 156 (459)
T ss_dssp HHHHS-SCEEEHHHHHTEEEEE---CSS-CEEEEEC-------SCCCCSSCSEEEESCGGGCC--HHHHHHHHHHSCTTC
T ss_pred Hhhhc-cchhhHHHHhccCccc---ccc-cchhccc-------ccccccCCCEEEEECchhCC--HHHHHHHHHhccCCC
Confidence 22111 1111111000000000 000 0011100 00112358999999999873 223333333445677
Q ss_pred EEEEeCCCCC
Q psy12466 532 RILLSGTPLQ 541 (680)
Q Consensus 532 rllLTgTP~~ 541 (680)
++++.|-|-|
T Consensus 157 ~~~~vGD~~Q 166 (459)
T 3upu_A 157 TIIGIGDNKQ 166 (459)
T ss_dssp EEEEEECTTS
T ss_pred EEEEECCHHH
Confidence 8999998877
No 137
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.74 E-value=0.0013 Score=74.61 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=56.1
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC------CCCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHhh---hcCC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG------LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQTI---VDTE 261 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~l---~~~~ 261 (680)
.++|||||. .|..||.+++.+++. ...+....++...... ........+|+|+|++.+....... .-..
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccccc
Confidence 479999996 677899999999862 2334444443321111 1112235789999999997655432 2355
Q ss_pred CcEEEEcCCCCCCCC
Q psy12466 262 FDLLICDEKSLLKPP 276 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~ 276 (680)
+++||+||||++-+.
T Consensus 176 ~~~lViDEah~l~~~ 190 (579)
T 3sqw_A 176 VDYKVLDEADRLLEI 190 (579)
T ss_dssp CCEEEEETHHHHTST
T ss_pred CCEEEEEChHHhhcC
Confidence 899999999998654
No 138
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.68 E-value=0.0046 Score=70.60 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=82.0
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHHHHH
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDEFKK 453 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E~~~ 453 (680)
-+.|+.++..++. ++-.++.-.+|+|||.++..++..+....... ..++++++|+... .+-.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~---------~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~---~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALT---------RRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHT---------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSC---CCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhc---------CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcC---CCeEEEEeCChhHHHHHHHHHHH
Confidence 3679999977642 36688889999999988887777776431100 1358999998554 444444443
Q ss_pred HhCCCCeeEeecCC-cchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceE
Q psy12466 454 WLGLTRMCPYHVNQ-KNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKR 532 (680)
Q Consensus 454 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~r 532 (680)
+.....+....... ...... -+.++-.+.....-.........++++|+|||+.+. .......+..+....+
T Consensus 219 ~~~~l~l~~~~~~~~~~~~~T-----ih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 219 ALRQLPLTDEQKKRIPEDAST-----LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHAR 291 (608)
T ss_dssp HHHHSSCCSCCCCSCSCCCBT-----TTSCC-----------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCE
T ss_pred HHhcCCCCHHHHhccchhhhh-----hHhhhccCCCchHHHhccCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCE
Confidence 32111100000000 000000 011110000000000111122368999999999773 3344556667777889
Q ss_pred EEEeCCCCCCCHH
Q psy12466 533 ILLSGTPLQNDLQ 545 (680)
Q Consensus 533 llLTgTP~~n~~~ 545 (680)
++|-|=|-|..+.
T Consensus 292 liLvGD~~QL~~V 304 (608)
T 1w36_D 292 VIFLGDRDQLASV 304 (608)
T ss_dssp EEEEECTTSGGGT
T ss_pred EEEEcchhhcCCC
Confidence 9999998776543
No 139
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.65 E-value=0.01 Score=63.67 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=88.9
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~E~ 451 (680)
.|.|||+.-+..+.. .+..++.-.-+.|||..+.+++.......+ ...+++++|+. ....+.+++
T Consensus 163 ~L~p~Qk~il~~l~~---------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-----g~~v~~vA~t~~qA~~vf~~i 228 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS---------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----DKAVGILAHKGSMSAEVLDRT 228 (385)
T ss_dssp CCCHHHHHHHHHHHH---------SSEEEEEECSSSCHHHHHHHHHHHHHHSSS-----SCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc---------CcEEEEEEcCcCChhHHHHHHHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHH
Confidence 589999998876632 245788888999999987776665443322 23589999973 333344666
Q ss_pred HHHh---CC-CCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHh-
Q psy12466 452 KKWL---GL-TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG- 526 (680)
Q Consensus 452 ~~~~---~~-~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~- 526 (680)
..++ |. .+..+.... ... ........+.+.+- ..+.+....++++|+||+|.+++. .....++..
T Consensus 229 ~~mi~~~P~ll~~~~~~~~-~~~---I~f~nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ 298 (385)
T 2o0j_A 229 KQAIELLPDFLQPGIVEWN-KGS---IELDNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPV 298 (385)
T ss_dssp HHHHHHSCTTTSCCEEEEC-SSE---EEETTSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHH
T ss_pred HHHHHhChHhhhhhhccCC-ccE---EEeCCCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHH
Confidence 6554 32 111111111 000 11111122333321 234566788999999999999762 233444432
Q ss_pred cc--cceEEEEeCCCCCCCHHHHHHHHhh
Q psy12466 527 LN--IRKRILLSGTPLQNDLQEFFYLNDF 553 (680)
Q Consensus 527 l~--~~~rllLTgTP~~n~~~el~sll~f 553 (680)
+. ...++++.+||-..+ .+|.+...
T Consensus 299 ls~~~~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 299 ISSGRRSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp HHSTTCCEEEEEECCCSSS--HHHHHHHH
T ss_pred hhcCCCCcEEEEeCCCCch--hHHHHHHH
Confidence 22 346889999996653 55555443
No 140
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.60 E-value=0.006 Score=71.74 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=87.9
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E 450 (680)
..|.+.|++|+..++. .+-.++.-.+|+|||.++..++..+.... ..++||++|+... .+-.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~---------~~~~lI~GppGTGKT~ti~~~i~~l~~~~------~~~ilv~a~tn~A~~~l~~~ 419 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLARQG------NGPVLVCAPSNIAVDQLTEK 419 (800)
T ss_dssp CCCCHHHHHHHHHHHT---------SSEEEEECCTTSCHHHHHHHHHHHHHTTC------SSCEEEEESSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcc---------CCeEEEEcCCCCCHHHHHHHHHHHHHHcC------CCcEEEEcCcHHHHHHHHHH
Confidence 4588999999987643 24578889999999999988888776532 1369999998544 555555
Q ss_pred HHHHhCCCCeeEeecCCcch----------------------------------------hhhh---------hhcCCCC
Q psy12466 451 FKKWLGLTRMCPYHVNQKNK----------------------------------------AEDY---------VYSRVSP 481 (680)
Q Consensus 451 ~~~~~~~~~v~~~~~~~~~~----------------------------------------~~~~---------~~~~~~~ 481 (680)
+.+.. .++.-+....+.. ...+ ......+
T Consensus 420 l~~~g--~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 497 (800)
T 2wjy_A 420 IHQTG--LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNAD 497 (800)
T ss_dssp HHTTT--CCEEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHhC--cceEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCC
Confidence 54421 1111111100000 0000 0012346
Q ss_pred EEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCC
Q psy12466 482 VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 482 vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n 542 (680)
|+++|...+.. ..+....|++||+|||.....+. ..+..+....+++|-|=|.|-
T Consensus 498 VI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 498 VICCTCVGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp EEEEETGGGGC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred EEEEchhhhCC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 67766554431 22445689999999996653221 123333445789999998874
No 141
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.59 E-value=0.0023 Score=70.59 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=52.8
Q ss_pred eEEEEECcc-cHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh---hhcCCCcEEE
Q psy12466 194 RVLIVTPSS-LTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLLI 266 (680)
Q Consensus 194 ~~LIV~P~s-l~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~---l~~~~~~~vI 266 (680)
++|||||.. |..+|.++++++.. ...+....++...... .....+|+|+|++.+...... +.-..+++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 799999976 56788888887753 3444444443322111 123468999999999776643 2224689999
Q ss_pred EcCCCCCCC
Q psy12466 267 CDEKSLLKP 275 (680)
Q Consensus 267 ~DEaH~lKN 275 (680)
+||+|++-.
T Consensus 241 iDEah~~~~ 249 (479)
T 3fmp_B 241 LDEADVMIA 249 (479)
T ss_dssp ECCHHHHHT
T ss_pred EECHHHHhh
Confidence 999998854
No 142
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=96.43 E-value=0.0039 Score=75.15 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=66.1
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhh--hcCCCcEEEEcC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTI--VDTEFDLLICDE 269 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l--~~~~~~~vI~DE 269 (680)
.++||++|. +|..+|.++|.++++..++..++++.. .....+|+|+|.+.+......- .-..+++||+||
T Consensus 83 ~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDE 155 (997)
T 4a4z_A 83 TKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDE 155 (997)
T ss_dssp CEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEEC
Confidence 479999994 578899999999987677777776542 1234689999999997655321 224589999999
Q ss_pred CCCCCCCCCC--CCccccCCCCCC-ceeccCC
Q psy12466 270 KSLLKPPSGN--SPGNDSGIPSLP-RKSDSGI 298 (680)
Q Consensus 270 aH~lKN~~s~--~~~a~~~l~~~~-r~~LTG~ 298 (680)
||++.+..-. ....+..+.... .++||.+
T Consensus 156 aH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 156 VHYVNDQDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp TTCCCTTCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred cccccccchHHHHHHHHHhcccCCCEEEEcCC
Confidence 9999876322 223333444444 3455533
No 143
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.43 E-value=0.0033 Score=76.95 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=64.2
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCCCe--eEEeecCCcchh----hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLTRM--CPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~v 265 (680)
+++||+||+. |..||.++|.++++...+ ..+++....... ........+|+|+|++.+.. .+.-..+++|
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~---~~~~~~l~lv 729 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS---DVKFKDLGLL 729 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS---CCCCSSEEEE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC---CccccccceE
Confidence 5889999987 577999999999865444 444433222211 11233468999999987743 2333568999
Q ss_pred EEcCCCCCCCCCCCCCccccCCCCCC-ceeccCCC
Q psy12466 266 ICDEKSLLKPPSGNSPGNDSGIPSLP-RKSDSGIG 299 (680)
Q Consensus 266 I~DEaH~lKN~~s~~~~a~~~l~~~~-r~~LTG~~ 299 (680)
|+||+|++.. .....++.+.... .++||++.
T Consensus 730 IiDEaH~~g~---~~~~~l~~l~~~~~vl~lSATp 761 (1151)
T 2eyq_A 730 IVDEEHRFGV---RHKERIKAMRANVDILTLTATP 761 (1151)
T ss_dssp EEESGGGSCH---HHHHHHHHHHTTSEEEEEESSC
T ss_pred EEechHhcCh---HHHHHHHHhcCCCCEEEEcCCC
Confidence 9999999743 2333344444433 56666553
No 144
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.38 E-value=0.0029 Score=65.52 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=54.3
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC---CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh---hhcCCCcEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG---LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT---IVDTEFDLL 265 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~---l~~~~~~~v 265 (680)
.++|||||+- |..++.++++++.. ...+...+++....... ....+|+|+|.+.+...... +.-....+|
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 3799999965 56789999988863 34444444443321111 34568999999998766532 222458899
Q ss_pred EEcCCCCCCC
Q psy12466 266 ICDEKSLLKP 275 (680)
Q Consensus 266 I~DEaH~lKN 275 (680)
|+||||++-+
T Consensus 240 VlDEad~l~~ 249 (300)
T 3fmo_B 240 VLDEADVMIA 249 (300)
T ss_dssp EETTHHHHHH
T ss_pred EEeCHHHHhh
Confidence 9999999754
No 145
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.35 E-value=0.0032 Score=70.86 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=55.5
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC------CCCeeEEeecCCcchh-hhcccCCCCEEEEehhHHHHHHHhh---hcCC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG------LTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQTI---VDTE 261 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~V~itsYe~l~~~~~~l---~~~~ 261 (680)
.++|||||. .|..||.+++++++. ...+..+.++...... ........+|+|+|++.+....... .-..
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 226 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 226 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccccccc
Confidence 479999996 677899999999852 2234444443322111 1112345789999999997654432 2245
Q ss_pred CcEEEEcCCCCCCCC
Q psy12466 262 FDLLICDEKSLLKPP 276 (680)
Q Consensus 262 ~~~vI~DEaH~lKN~ 276 (680)
+++||+||||++-..
T Consensus 227 ~~~lViDEah~l~~~ 241 (563)
T 3i5x_A 227 VDYKVLDEADRLLEI 241 (563)
T ss_dssp CCEEEEETHHHHTST
T ss_pred ceEEEEeCHHHHhcc
Confidence 899999999998654
No 146
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.24 E-value=0.0055 Score=71.09 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=57.5
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh--cCCCcEEEEc
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~--~~~~~~vI~D 268 (680)
.++|+|+|.. |..+|.+++++|.+ +.++..++|+...... .....+|+|+|++.+......-. -..+++||+|
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiD 145 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVD 145 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEET
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEe
Confidence 4799999987 78899999976654 3456666665433221 22467899999999976554311 1257899999
Q ss_pred CCCCCCCC
Q psy12466 269 EKSLLKPP 276 (680)
Q Consensus 269 EaH~lKN~ 276 (680)
|+|.+.+.
T Consensus 146 E~H~l~~~ 153 (702)
T 2p6r_A 146 EIHLLDSE 153 (702)
T ss_dssp TGGGGGCT
T ss_pred eeeecCCC
Confidence 99999763
No 147
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.21 E-value=0.005 Score=71.71 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=57.2
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhc--CCCcEEEEc
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD--TEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~--~~~~~vI~D 268 (680)
.++|+|+|. .|..+|.+++++|.+ +.++..++|+...... .....+|+|+|++.+......-.. ..+++||+|
T Consensus 69 ~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 69 GKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp SEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 589999996 778899999987653 3566666665433221 224678999999999765443111 257899999
Q ss_pred CCCCCCC
Q psy12466 269 EKSLLKP 275 (680)
Q Consensus 269 EaH~lKN 275 (680)
|+|.+..
T Consensus 146 E~H~l~~ 152 (720)
T 2zj8_A 146 EIHLIGS 152 (720)
T ss_dssp TGGGGGC
T ss_pred CCcccCC
Confidence 9999975
No 148
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.19 E-value=0.029 Score=55.42 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=62.2
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
+.-.++.-+||.|||..++.++..+...+. +++++.|.---. +...+.-..+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~-------kVli~~~~~d~r----------~~~~i~srlG~---------- 64 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV-------KYLVFKPKIDTR----------SIRNIQSRTGT---------- 64 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC-------CEEEEEECCCGG----------GCSSCCCCCCC----------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC-------EEEEEEeccCch----------HHHHHHHhcCC----------
Confidence 334566789999999999999988877653 488887752100 00001000000
Q ss_pred cCCCCEEEEeHHHHHHHHH-hhhccCceEEEEcCcccccCcccHHHHHHHhc-ccceEEEEeCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NIRKRILLSGT 538 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~-~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~~~rllLTgT 538 (680)
....+.+.+.+.+..... .+....+++|||||+|.+... ....+..+ .....++++|-
T Consensus 65 -~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 65 -SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp -SSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred -CccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 011222333333333222 222346899999999987432 33344443 23567899996
No 149
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.18 E-value=0.0064 Score=58.26 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
.++.-.||.|||..++.++..+...+. +++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~-------~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKK-------KVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTC-------EEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEeec
Confidence 467789999999999988887776542 58888886
No 150
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.14 E-value=0.029 Score=63.72 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=85.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|.|||+.-+..+.. .+..++.-.-|.|||..+.+++.......+ ...++++.|+ .......+.+
T Consensus 163 ~l~p~Q~~i~~~l~~---------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----~~~i~~va~t~~qA~~~~~~i 228 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS---------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----DKAVGILAHKGSMSAEVLDRT 228 (592)
T ss_dssp CCCHHHHHHHHHHHH---------CSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----SCEEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhcc---------ccEEEEEEcCccChHHHHHHHHHHHHHhCC-----CCeEEEEECCHHHHHHHHHHH
Confidence 589999988776522 245788889999999987766655544432 2368999997 3344455677
Q ss_pred HHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-c--
Q psy12466 452 KKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-N-- 528 (680)
Q Consensus 452 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~-- 528 (680)
..++......+...................+...+- ....+....++++|+||+|.+++.. ....++... .
T Consensus 229 ~~~i~~~p~~~~~~~~~~~~~~i~~~nGs~i~~~s~-----~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 229 KQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSG 302 (592)
T ss_dssp HHHHTTSCTTTSCCEEEECSSEEEETTSCEEEEEEC-----CHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSS
T ss_pred HHHHHhChHhhccccccCCccEEEecCCCEEEEEeC-----CCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccC
Confidence 766533211000000000000011111122222221 1234556679999999999987632 444444432 2
Q ss_pred cceEEEEeCCCCCC
Q psy12466 529 IRKRILLSGTPLQN 542 (680)
Q Consensus 529 ~~~rllLTgTP~~n 542 (680)
...++++++||-..
T Consensus 303 ~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 303 RRSKIIITTTPNGL 316 (592)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCceEEEEeCCCCc
Confidence 34689999999655
No 151
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0081 Score=73.16 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=56.0
Q ss_pred CeEEEEECc-ccHHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh--cCCCcEEEEcC
Q psy12466 193 LRVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICDE 269 (680)
Q Consensus 193 ~~~LIV~P~-sl~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~--~~~~~~vI~DE 269 (680)
.++||++|. .|..||.++|.++++ .+..++|+.. .....+|+|+|.+.++.....-. -..+++||+||
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~--~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG--DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDE 298 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS--SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEET
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC--CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhh
Confidence 589999997 567899999999997 5666665543 12447899999999977543211 12478999999
Q ss_pred CCCCCCC
Q psy12466 270 KSLLKPP 276 (680)
Q Consensus 270 aH~lKN~ 276 (680)
||++.+.
T Consensus 299 aH~l~d~ 305 (1108)
T 3l9o_A 299 VHYMRDK 305 (1108)
T ss_dssp GGGTTSH
T ss_pred hhhcccc
Confidence 9999764
No 152
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.88 E-value=0.045 Score=53.56 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=28.1
Q ss_pred EEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 402 LADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 402 LaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
+.-+||.|||..++..+..+...+. ++||+.|.
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~g~-------kVli~k~~ 65 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFAKQ-------HAIVFKPC 65 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTTC-------CEEEEECC
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCC-------EEEEEEec
Confidence 5789999999999999988877763 58999886
No 153
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.77 E-value=0.0091 Score=69.37 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=65.1
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC-CCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh--cCCCcEEEEc
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV--DTEFDLLICD 268 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~--~~~~~~vI~D 268 (680)
.++|+++|.- |..+|.++++++.+ +.++..++|+....... ....+|+|+|++.+......-. -..+++||+|
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLD 152 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEEC
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEe
Confidence 4899999987 78899999976643 35666666654332221 2367899999999977544311 1257899999
Q ss_pred CCCCCCCCCCC--CCccccCCCCCCceeccCCC
Q psy12466 269 EKSLLKPPSGN--SPGNDSGIPSLPRKSDSGIG 299 (680)
Q Consensus 269 EaH~lKN~~s~--~~~a~~~l~~~~r~~LTG~~ 299 (680)
|+|.+.+..-. ....+..+...+.+++|.+.
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl 185 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAKRRNLLALSATI 185 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCC
T ss_pred chhhcCCcccchHHHHHHHhcccCcEEEEcCCC
Confidence 99998643211 11112233334456666543
No 154
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.74 E-value=0.082 Score=60.32 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=52.1
Q ss_pred cccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHH
Q psy12466 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWN 448 (680)
Q Consensus 370 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 448 (680)
+...|-+.|+++|. ...+..++-...|+|||.+.+.-+..+...+.. ...++|+|+++ ....+-.
T Consensus 6 ~~~~Ln~~Q~~av~-----------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---~~~~iL~ltft~~aa~e~~ 71 (647)
T 3lfu_A 6 LLDSLNDKQREAVA-----------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC---SPYSIMAVTFTNKAAAEMR 71 (647)
T ss_dssp HHTTCCHHHHHHHT-----------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC---CGGGEEEEESSHHHHHHHH
T ss_pred hhhcCCHHHHHHHh-----------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC---ChhhEEEEeccHHHHHHHH
Confidence 34568899999994 123456777789999999999988888765421 12469999987 4556666
Q ss_pred HHHHHHhC
Q psy12466 449 DEFKKWLG 456 (680)
Q Consensus 449 ~E~~~~~~ 456 (680)
+.+.+..+
T Consensus 72 ~rl~~~~~ 79 (647)
T 3lfu_A 72 HRIGQLMG 79 (647)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 66776654
No 155
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=95.62 E-value=0.14 Score=58.65 Aligned_cols=60 Identities=27% Similarity=0.308 Sum_probs=40.2
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH----HHHHHHHHHHhCCCCeeEee
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT----SNWNDEFKKWLGLTRMCPYH 464 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll----~qW~~E~~~~~~~~~v~~~~ 464 (680)
.|.|.-..+|.|||+++...+....-.| +.+.||+|+.-+ ..|...+-+|++....+++.
T Consensus 89 ~G~iaEM~TGEGKTLva~lp~~lnAL~G-------~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 89 EGKVAEMKTGEGKTLAATMPIYLNALIG-------KGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp TTCEEECCTTSCHHHHTHHHHHHHHTTS-------SCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CCChhhccCCCCccHHHHHHHHHHHhcC-------CceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 4668889999999997644332222222 238999998544 56999999998854333333
No 156
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.52 E-value=0.0097 Score=72.43 Aligned_cols=83 Identities=12% Similarity=0.229 Sum_probs=59.8
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhC-CCCeeEEeecCCcchh----hhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEE
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLG-LTRMCPYHVNQKNKAE----DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLI 266 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI 266 (680)
.++|||||.. |..|+.++|+++.+ ..++..++++...... ........+|+|+|.+.+......+....+++||
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lV 201 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVF 201 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEE
T ss_pred CeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEE
Confidence 4799999965 56899999999762 2466666665543111 1222344799999999997766666667899999
Q ss_pred EcCCCCCCC
Q psy12466 267 CDEKSLLKP 275 (680)
Q Consensus 267 ~DEaH~lKN 275 (680)
+||||.+-.
T Consensus 202 iDEaH~l~~ 210 (1104)
T 4ddu_A 202 VDDVDAVLK 210 (1104)
T ss_dssp ESCHHHHTT
T ss_pred EeCCCcccc
Confidence 999997643
No 157
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.24 E-value=0.047 Score=52.56 Aligned_cols=122 Identities=16% Similarity=0.259 Sum_probs=64.4
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcC
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSR 478 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 478 (680)
=.++.-.||.|||..++.++..+...+. +++|+.|.. |. ++ +.. ....+....
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~-------kV~v~k~~~----d~----r~-~~~-~i~s~~g~~---------- 62 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQ-------KIQVFKPEI----DN----RY-SKE-DVVSHMGEK---------- 62 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEEEEC----------------C-EEECTTSCE----------
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC-------EEEEEEecc----Cc----cc-hHH-HHHhhcCCc----------
Confidence 3456678999999999999888876653 589998862 11 11 111 111111000
Q ss_pred CCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhc-ccceEEEEeCC--CCC----CCHHHHHHHH
Q psy12466 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NIRKRILLSGT--PLQ----NDLQEFFYLN 551 (680)
Q Consensus 479 ~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l-~~~~rllLTgT--P~~----n~~~el~sll 551 (680)
...+.+...+.+ ...+. ..+++||+||||.+... ....+..+ .....++++|- .++ +...+|..+.
T Consensus 63 ~~a~~~~~~~~i---~~~~~-~~~dvViIDEaqfl~~~---~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~A 135 (191)
T 1xx6_A 63 EQAVAIKNSREI---LKYFE-EDTEVIAIDEVQFFDDE---IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIA 135 (191)
T ss_dssp EECEEESSSTHH---HHHCC-TTCSEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHC
T ss_pred eeeEeeCCHHHH---HHHHh-ccCCEEEEECCCCCCHH---HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHc
Confidence 001112222111 11221 25899999999997422 23444443 33456777775 344 4455565555
Q ss_pred hhh
Q psy12466 552 DFA 554 (680)
Q Consensus 552 ~fl 554 (680)
+.+
T Consensus 136 D~V 138 (191)
T 1xx6_A 136 EFV 138 (191)
T ss_dssp SEE
T ss_pred ccE
Confidence 444
No 158
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=94.71 E-value=0.019 Score=69.60 Aligned_cols=81 Identities=17% Similarity=0.296 Sum_probs=57.1
Q ss_pred CeEEEEECcc-cHHHHHHHHHHHhCCC------CeeEEeecCCcchh--hhcccCCCCEEEEehhHHHHHHHhhhcCCCc
Q psy12466 193 LRVLIVTPSS-LTSNWNDEFKKWLGLT------RMCPYHVNQKNKAE--DYVYSRVSPVLIISYEMLIRAYQTIVDTEFD 263 (680)
Q Consensus 193 ~~~LIV~P~s-l~~nW~~E~~k~~~~~------~~~~~~~~~~~~~~--~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~ 263 (680)
.++|||||+. |..++.++|++++... ++..++|+...... ........+|+|+|.+.+......|. .++
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~--~l~ 177 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELG--HFD 177 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSC--CCS
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhc--cCC
Confidence 4799999965 5679999999998643 45556665443221 11111128999999999977655544 688
Q ss_pred EEEEcCCCCCCC
Q psy12466 264 LLICDEKSLLKP 275 (680)
Q Consensus 264 ~vI~DEaH~lKN 275 (680)
+||+||||++-+
T Consensus 178 ~lViDEah~~l~ 189 (1054)
T 1gku_B 178 FIFVDDVDAILK 189 (1054)
T ss_dssp EEEESCHHHHHT
T ss_pred EEEEeChhhhhh
Confidence 999999999765
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.60 E-value=0.25 Score=45.69 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 379 RQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 379 ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+..+.+.+. .....+.+|.-+.|+|||..+-+++..+..
T Consensus 28 ~~~~~~l~~~l~---~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 28 DTEIRRAIQILS---RRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHHT---SSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHh---CCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444444321 234567888999999999999888877655
No 160
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.59 E-value=0.12 Score=51.12 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=27.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
-+..-+||.|||..++..+......+. +++|+-|.
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~-------kvli~kp~ 56 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQY-------KCLVIKYA 56 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTC-------CEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC-------eEEEEeec
Confidence 355678999999999998888776653 58888875
No 161
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.12 Score=55.37 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=51.9
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
....+|.+|.-.+|+|||..|-|++..... +++.|-...++..|..|-.+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~----------~f~~v~~s~l~sk~vGese~~------------------- 229 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDC----------KFIRVSGAELVQKYIGEGSRM------------------- 229 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTC----------EEEEEEGGGGSCSSTTHHHHH-------------------
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCC----------CceEEEhHHhhccccchHHHH-------------------
Confidence 345789999999999999999888866432 366676666766664443321
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
++..........+.+|++||.+.+.
T Consensus 230 ----------------vr~lF~~Ar~~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 230 ----------------VRELFVMAREHAPSIIFMDEIDSIG 254 (405)
T ss_dssp ----------------HHHHHHHHHHTCSEEEEEESSSCCT
T ss_pred ----------------HHHHHHHHHHhCCceEeeecchhhc
Confidence 1222233344568899999999873
No 162
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.33 E-value=0.054 Score=58.83 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=68.9
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY 476 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 476 (680)
.-.++.-..|.|||.....++.. ++.||++|+ .+...|.+.+.+. +. .
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~------------~~~lVlTpT~~aa~~l~~kl~~~-~~---------~--------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF------------EEDLILVPGRQAAEMIRRRANAS-GI---------I--------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT------------TTCEEEESCHHHHHHHHHHHTTT-SC---------C---------
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc------------CCeEEEeCCHHHHHHHHHHhhhc-Cc---------c---------
Confidence 34667889999999987766521 236999997 6778898887532 00 0
Q ss_pred cCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCC
Q psy12466 477 SRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542 (680)
Q Consensus 477 ~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n 542 (680)
.....-+.|++.+...........+++||+|||..+ +.......+..++. .++++.|=|-|-
T Consensus 211 -~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~--~~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 211 -VATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML--HTGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp -CCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS--CHHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred -ccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC--CHHHHHHHHHhCCC-CEEEEecCcccc
Confidence 011223677776644322222234899999999876 23333333333344 889999988664
No 163
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.24 E-value=0.13 Score=52.76 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
...+.+|.-++|+|||..+-+++..+...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 344689999999999999999888877654
No 164
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.01 E-value=0.049 Score=61.22 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=28.7
Q ss_pred CCCEEEEehhHHHHHHHh--h-hcCCCcEEEEcCCCCCCCCCCC
Q psy12466 239 VSPVLIISYEMLIRAYQT--I-VDTEFDLLICDEKSLLKPPSGN 279 (680)
Q Consensus 239 ~~~V~itsYe~l~~~~~~--l-~~~~~~~vI~DEaH~lKN~~s~ 279 (680)
..+|+|++|..+...... + ......++|+||||+|-+ ...
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~ 190 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNE 190 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHH
Confidence 468999999999765321 1 113567899999999987 443
No 165
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.86 E-value=0.56 Score=48.35 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=63.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+.+.+|.-+.|+|||..+-+++..+...+. +++.+-...+...+...+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~--------------------- 87 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGY-------RVIYSSADDFAQAMVEHLKKG--------------------- 87 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTC-------CEEEEEHHHHHHHHHHHHHHT---------------------
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCC-------EEEEEEHHHHHHHHHHHHHcC---------------------
Confidence 3567899999999999999888887765431 255554434434333333210
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcc---cHHHHHHHhc-ccceEEEEeCCCCC----CCHHHH
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK---SKLYELMTGL-NIRKRILLSGTPLQ----NDLQEF 547 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~---s~~~~~l~~l-~~~~rllLTgTP~~----n~~~el 547 (680)
..+.+... + ...+++++||+|.+.... ......+..+ ....++++|++.-. .-...|
T Consensus 88 ----------~~~~~~~~---~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L 152 (324)
T 1l8q_A 88 ----------TINEFRNM---Y--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRL 152 (324)
T ss_dssp ----------CHHHHHHH---H--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHH
T ss_pred ----------cHHHHHHH---h--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHh
Confidence 01111111 1 137899999999986421 2222233332 34456788877322 223456
Q ss_pred HHHHh
Q psy12466 548 FYLND 552 (680)
Q Consensus 548 ~sll~ 552 (680)
.+-+.
T Consensus 153 ~sR~~ 157 (324)
T 1l8q_A 153 VSRFE 157 (324)
T ss_dssp HHHHH
T ss_pred hhccc
Confidence 66553
No 166
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.84 E-value=0.46 Score=49.50 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=37.5
Q ss_pred cCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 374 LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
++|+|.+.++.+.+.+.. ....+..++.-+.|+|||..+.+++..+....
T Consensus 3 ~~pw~~~~~~~l~~~i~~--~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQA--GRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CCGGGHHHHHHHHHHHHT--TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred CCCchHHHHHHHHHHHHc--CCcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 578999998887765422 12234578889999999999999998876543
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.78 E-value=0.27 Score=45.55 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
....+.+|.-+.|+|||..+-+++..+..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999888887765
No 168
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.60 E-value=0.17 Score=58.08 Aligned_cols=77 Identities=22% Similarity=0.249 Sum_probs=57.2
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
++.+.|..++.-+.+.+. .+.....|.--+|.|||+++..++... . +|+|||+|+ .+..||.+||
T Consensus 8 ~~~~~q~~ai~~l~~~~~----~~~~~~~l~g~tgs~kt~~~a~~~~~~--~--------~~~lvv~~~~~~A~ql~~el 73 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALR----DGERFVTLLGATGTGKTVTMAKVIEAL--G--------RPALVLAPNKILAAQLAAEF 73 (664)
T ss_dssp CCCTTHHHHHHHHHHHHH----TTCSEEEEEECTTSCHHHHHHHHHHHH--T--------CCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHh----cCCCcEEEEcCCCcHHHHHHHHHHHHh--C--------CCEEEEecCHHHHHHHHHHH
Confidence 467899999987766431 122235677889999999988777544 1 249999998 6779999999
Q ss_pred HHHhCCCCeeEe
Q psy12466 452 KKWLGLTRMCPY 463 (680)
Q Consensus 452 ~~~~~~~~v~~~ 463 (680)
..|+|...|..+
T Consensus 74 ~~~~~~~~V~~f 85 (664)
T 1c4o_A 74 RELFPENAVEYF 85 (664)
T ss_dssp HHHCTTSEEEEC
T ss_pred HHHCCCCeEEEc
Confidence 999987655544
No 169
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.50 E-value=0.21 Score=46.77 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHH
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~ 422 (680)
+.|.+++..+.+.........+.+.+|.-+.|.|||..+-+++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46888888776654433334567788889999999999988888776
No 170
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.45 E-value=0.15 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...|.+|.-++|+|||..+-+++..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35678999999999999998887653
No 171
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.92 E-value=0.22 Score=54.08 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=50.2
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
....+|.+|.-.+|+|||..|-|++..+.. +++.|-...++..|..+-.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~----------~~~~v~~s~l~sk~~Gese~-------------------- 261 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA----------NFIFSPASGIVDKYIGESAR-------------------- 261 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----------EEEEEEGGGTCCSSSSHHHH--------------------
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC----------CEEEEehhhhccccchHHHH--------------------
Confidence 345789999999999999999988876532 35666555555555333222
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.++..........+.+|++||+..+.
T Consensus 262 ---------------~ir~~F~~A~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 262 ---------------IIREMFAYAKEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp ---------------HHHHHHHHHHHSCSEEEEEECCCSSS
T ss_pred ---------------HHHHHHHHHHhcCCceeeeecccccc
Confidence 12222233345578899999999873
No 172
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.24 Score=53.43 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=50.8
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
....+|.+|.-.+|+|||..|-|++..... +++.|....++..|..|-.+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~----------~fi~v~~s~l~sk~vGesek~------------------- 263 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSA----------TFLRIVGSELIQKYLGDGPRL------------------- 263 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTC----------EEEEEESGGGCCSSSSHHHHH-------------------
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCC----------CEEEEEHHHhhhccCchHHHH-------------------
Confidence 345689999999999999999888876432 366666666665554333221
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
++..........+.+|++||.+.+.
T Consensus 264 ----------------ir~lF~~Ar~~aP~IIfiDEiDai~ 288 (437)
T 4b4t_I 264 ----------------CRQIFKVAGENAPSIVFIDEIDAIG 288 (437)
T ss_dssp ----------------HHHHHHHHHHTCSEEEEEEEESSSS
T ss_pred ----------------HHHHHHHHHhcCCcEEEEehhhhhc
Confidence 2222233344568899999999873
No 173
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.73 E-value=0.61 Score=48.96 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=23.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
.....+|.-+.|+|||..+-+++..+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34578889999999999998888776543
No 174
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=92.32 E-value=0.11 Score=58.15 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=25.8
Q ss_pred CCCEEEEehhHHHHHHH--hhh-------cCCCcEEEEcCCCCC
Q psy12466 239 VSPVLIISYEMLIRAYQ--TIV-------DTEFDLLICDEKSLL 273 (680)
Q Consensus 239 ~~~V~itsYe~l~~~~~--~l~-------~~~~~~vI~DEaH~l 273 (680)
..+|+|++|..+..... .+. ....+++|+||||+|
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl 187 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNL 187 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGG
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccH
Confidence 35899999999965322 222 235689999999999
No 175
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.38 Score=52.39 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=50.4
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhh
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 473 (680)
....+|.+|.-.+|+|||..|-|++..+.. +++.|-...++..|..+-.+
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~----------~fi~vs~s~L~sk~vGesek-------------------- 289 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDA----------TFIRVIGSELVQKYVGEGAR-------------------- 289 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTC----------EEEEEEGGGGCCCSSSHHHH--------------------
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCC----------CeEEEEhHHhhcccCCHHHH--------------------
Confidence 356789999999999999999888866432 35666666665555333222
Q ss_pred hhhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 474 ~~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
.++..........+.+|++||...+.
T Consensus 290 ---------------~ir~lF~~Ar~~aP~IIfiDEiDai~ 315 (467)
T 4b4t_H 290 ---------------MVRELFEMARTKKACIIFFDEIDAVG 315 (467)
T ss_dssp ---------------HHHHHHHHHHHTCSEEEEEECCTTTS
T ss_pred ---------------HHHHHHHHHHhcCCceEeeccccccc
Confidence 12222333344568899999999873
No 176
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.22 E-value=0.38 Score=55.21 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=56.7
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
+++.+|..++.-+.+.+. .+.....|.--+|.|||+++..++... . +|+|||+|+ .+..+|.+|+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~----~~~~~~~l~g~~gs~k~~~~a~~~~~~--~--------~~~lvv~~~~~~A~~l~~el 77 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQ----EGKKHQTLLGATGTGKTFTVSNLIKEV--N--------KPTLVIAHNKTLAGQLYSEF 77 (661)
T ss_dssp CCCTTHHHHHHHHHHHHH----TTCSEEEEEECTTSCHHHHHHHHHHHH--C--------CCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh----cCCCcEEEECcCCcHHHHHHHHHHHHh--C--------CCEEEEECCHHHHHHHHHHH
Confidence 356799999987766431 222335677889999999988777543 1 249999998 6679999999
Q ss_pred HHHhCCCCeeEe
Q psy12466 452 KKWLGLTRMCPY 463 (680)
Q Consensus 452 ~~~~~~~~v~~~ 463 (680)
..|+|...|..+
T Consensus 78 ~~~~~~~~v~~f 89 (661)
T 2d7d_A 78 KEFFPNNAVEYF 89 (661)
T ss_dssp HHHCTTSEEEEE
T ss_pred HHHcCCCcEEEc
Confidence 999987655544
No 177
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.18 E-value=0.22 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...|.+|.-++|+|||..|-+++..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35678999999999999998888765
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.12 E-value=0.33 Score=47.12 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=31.3
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
+...+..+..... ...+.+.+|.-+.|+|||..+-+++..+...+
T Consensus 36 ~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~ 80 (242)
T 3bos_A 36 NDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLIHAACARANELE 80 (242)
T ss_dssp CHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3455555544321 22567788999999999999988888776653
No 179
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.66 E-value=0.46 Score=45.66 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=26.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
-++.-.||+|||...+-.+..+...+ .+++++-|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~-------~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ-------YKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT-------CCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEccc
Confidence 45678999999988877777776654 248888875
No 180
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.65 E-value=1.4 Score=41.62 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
..+.+|.-+.|+|||..+-+++..+...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3458899999999999988888776543
No 181
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=91.64 E-value=0.32 Score=55.59 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=50.2
Q ss_pred eEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCC
Q psy12466 194 RVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSL 272 (680)
Q Consensus 194 ~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~ 272 (680)
++||++|.-. ..++.+.+.+.++ ..+...++... .....+|++.+.+.+.. ...+...++++||+||||.
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~-------~~~~~~IlV~TPGrLl~-~~~l~l~~l~~lVlDEAH~ 329 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT-------ITTGAPVTYSTYGKFLA-DGGCSGGAYDIIICDECHS 329 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE-------ECCCCSEEEEEHHHHHH-TTSCCTTSCSEEEETTTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe-------ccCCCCEEEECcHHHHh-CCCcccCcccEEEEccchh
Confidence 7999999865 5688888888776 34544444321 23557899999999832 2233445699999999987
Q ss_pred C
Q psy12466 273 L 273 (680)
Q Consensus 273 l 273 (680)
+
T Consensus 330 l 330 (666)
T 3o8b_A 330 T 330 (666)
T ss_dssp C
T ss_pred c
Confidence 6
No 182
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.48 E-value=0.21 Score=54.22 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=33.5
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHH
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWND 449 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~ 449 (680)
....+|.+|.-.+|+|||..|-|++..... +++.|-...++..|..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~----------~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNA----------TFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----------EEEEEEGGGGCSSCSS
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCC----------CEEEEehhhhhhcccc
Confidence 345789999999999999999888866432 3666666666655533
No 183
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.43 E-value=1.1 Score=47.52 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=27.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
...+.+|.-+.|+|||..|-+++..+ + .+++.|....+...|
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~---~-------~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES---N-------ATFFNISAASLTSKY 188 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT---T-------CEEEEECSCCC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh---c-------CcEEEeeHHHhhccc
Confidence 35789999999999999888876542 1 235555555555444
No 184
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.35 E-value=0.32 Score=52.70 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=31.6
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
....+|.+|.-.+|+|||..|-|++..+.. +++.|-...++..|
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~----------~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKA----------AFIRVNGSEFVHKY 246 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTC----------EEEEEEGGGTCCSS
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC----------CeEEEecchhhccc
Confidence 346788999999999999999888876532 35555555555444
No 185
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.32 E-value=0.44 Score=46.50 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=26.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
-++.-+||.|||...+-.+..+...+. +++|+-|.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~-------kvli~kp~ 65 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQ-------KVVVFKPA 65 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTC-------CEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC-------ceEEEEec
Confidence 456678999999888888777766553 48888885
No 186
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.88 E-value=0.62 Score=47.93 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=34.8
Q ss_pred CceEEEEcCccccc-Cc-ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 501 EFDLLICDEGHRLK-NG-KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 501 ~~~~vIlDEaH~~k-n~-~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
...++|+||+|.+. .. .....+.+.......++++|+++...-...+.+-+..+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~ 161 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVIT 161 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEE
Confidence 57899999999984 21 222333344445667888888876655555666554443
No 187
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.86 E-value=5.1 Score=41.41 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=32.5
Q ss_pred CcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 375 KPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 375 rpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
|.-|...+...+... .....+.+.+|.-.+|+|||.++-+++..+....
T Consensus 25 Re~E~~~i~~~L~~~--i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 25 QVEDFTRIFLPIYDS--LMSSQNKLFYITNADDSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp HHHHHHHHHHHHHHH--HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH--hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 344555554232221 1234566788899999999999999998887643
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.75 E-value=0.24 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
..+|.+|.-++|+|||..+-+++..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34788999999999999998888664
No 189
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.66 E-value=0.88 Score=43.16 Aligned_cols=28 Identities=29% Similarity=0.429 Sum_probs=23.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.+.+|.-+.|+|||..+-+++..+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~ 82 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN 82 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6788999999999999988888776543
No 190
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.54 E-value=0.92 Score=44.78 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.+|.-++|+|||..+-+++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999988887654
No 191
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.34 E-value=0.45 Score=46.76 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=45.3
Q ss_pred eEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCC
Q psy12466 194 RVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSL 272 (680)
Q Consensus 194 ~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~ 272 (680)
++|+++|.-. ..+..+.+.+.++. .+....+... ...........+|+++|.+.+...... .-.++++||+||+|+
T Consensus 111 ~~l~~~p~~~la~q~~~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~ 187 (235)
T 3llm_A 111 NIVVTQPRRISAVSVAERVAFERGE-EPGKSCGYSV-RFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHE 187 (235)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTTC-CTTSSEEEEE-TTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTS
T ss_pred EEEEeccchHHHHHHHHHHHHHhcc-ccCceEEEee-chhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCcc
Confidence 7899999754 44666777766642 2222222111 111111113467999999988776543 124588999999997
No 192
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.63 E-value=0.27 Score=49.60 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=21.6
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
....+.+|.-++|+|||..+-+++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45678899999999999988877654
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.48 E-value=0.91 Score=47.45 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=32.3
Q ss_pred cccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 376 pyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
+.+++++..+.+.+... ...+++.+|.-++|+|||..+-+++..+..
T Consensus 50 ~~~~~~l~~l~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREG-KIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp HHHHHHHHHHHHHHHTT-CCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcC-CCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44555666665543321 223467899999999999999998887753
No 194
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.44 E-value=1.7 Score=47.01 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=24.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
..+.+|.-+.|+|||..+-+++..+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~ 158 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE 158 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 56789999999999999988888776653
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.40 E-value=1.1 Score=44.74 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=21.6
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
....+.+|.-++|+|||..|-+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567888899999999999888776
No 196
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.27 E-value=1.9 Score=44.28 Aligned_cols=40 Identities=8% Similarity=-0.128 Sum_probs=25.9
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
|.+.+..+.+.+.. ......++.-+.|.|||..+.+++..
T Consensus 2 ~~~~~~~L~~~i~~---~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEK---SEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHT---CSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHC---CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44555555443321 22456888999999999998888764
No 197
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.26 E-value=2.4 Score=46.00 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.5
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
-.+++-..|.|||.++..++..+...+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 456677899999999999998888765
No 198
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.79 E-value=2.2 Score=43.41 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.7
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.+.+|.-+.|+|||..+-+++..+..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 35889999999999999888877643
No 199
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=88.21 E-value=0.81 Score=49.78 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=42.5
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhh-cCCCcEEEEcCC
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIV-DTEFDLLICDEK 270 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~-~~~~~~vI~DEa 270 (680)
.++||++|... ..++.+++. ...+. +....... .......|.+++.+.+........ -.++++||+|||
T Consensus 49 ~~~lvl~Ptr~La~Q~~~~l~----g~~v~-~~~~~~~~----~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEa 119 (451)
T 2jlq_A 49 LRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVKS----DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEA 119 (451)
T ss_dssp CCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTCSC----CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETT
T ss_pred CcEEEECCCHHHHHHHHHHhc----Cceee-eeeccccc----cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCC
Confidence 47899999765 457777664 12221 11111100 112334688888887755443222 246899999999
Q ss_pred CCC
Q psy12466 271 SLL 273 (680)
Q Consensus 271 H~l 273 (680)
|++
T Consensus 120 h~~ 122 (451)
T 2jlq_A 120 HFT 122 (451)
T ss_dssp TCC
T ss_pred ccC
Confidence 987
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.00 E-value=3.3 Score=44.70 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=61.4
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe-ccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT-PSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~-P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~ 477 (680)
-.+++-..|.|||.++..++..+...+. ++++++ ...-..- .+.+..+.....+.++.......
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~-------kVllv~~D~~r~~a-~eqL~~~~~~~gv~~~~~~~~~d------- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGY-------KVGLVAADVYRPAA-YDQLLQLGNQIGVQVYGEPNNQN------- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTC-------CEEEEEECCSCHHH-HHHHHHHHHTTTCCEECCTTCSC-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEEecCccchhH-HHHHHHHHHhcCCceeeccccCC-------
Confidence 3556678999999999999988877653 355555 4322211 23344443332232222211110
Q ss_pred CCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc--CcccHHHHHHHhc----c-cceEEEEeCCCC
Q psy12466 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK--NGKSKLYELMTGL----N-IRKRILLSGTPL 540 (680)
Q Consensus 478 ~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k--n~~s~~~~~l~~l----~-~~~rllLTgTP~ 540 (680)
.-..+......+....+|+||+|++-+.. ... .....+..+ . ....+++.++--
T Consensus 164 --------p~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~-~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 164 --------PIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEET-KLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp --------HHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTT-HHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------HHHHHHHHHHHHHhcCCCEEEEECCCCccccCCH-HHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 01112233444555679999999998754 322 222333322 2 234467777753
No 201
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.58 E-value=1.1 Score=45.61 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=21.5
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 34889999999999999888877643
No 202
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.41 E-value=0.44 Score=51.86 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=26.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
..+|.+|.-++|+|||..|-+++..+. + .+++.|....+...|
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~--~-------~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN--N-------STFFSISSSDLVSKW 208 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC--S-------SEEEEECCC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC--C-------CCEEEEeHHHHHhhh
Confidence 457889999999999999988876541 1 235555555555444
No 203
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.04 E-value=7.9 Score=40.18 Aligned_cols=26 Identities=27% Similarity=0.162 Sum_probs=21.5
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
..+|.-+.|+|||..+-+++..+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 68899999999999988887766543
No 204
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=86.58 E-value=1.6 Score=47.12 Aligned_cols=52 Identities=8% Similarity=-0.072 Sum_probs=33.8
Q ss_pred eEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEeH
Q psy12466 434 KVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISY 487 (680)
Q Consensus 434 ~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~ty 487 (680)
++||+||. .-.....+.+.+. ..++..+|+..+.........+..+|+|+|-
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 48999997 3445555556554 5678888876444433444556788888883
No 205
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.44 E-value=1.8 Score=44.60 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=62.2
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc--hHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS--LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s--ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+.+|.-+.|+|||..+-+++..+....... ..++-+-+.. -+..+.+.+..+.... + ...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~------- 121 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMK----SRILELNASDERGISIVREKVKNFARLT-V-----SKP------- 121 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHT----TSEEEECSSSCCCHHHHTTHHHHHHHSC-C-----CCC-------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccc----cceEEEccccccchHHHHHHHHHHhhhc-c-----ccc-------
Confidence 4588999999999999988887765320000 1134344432 2344444333332110 0 000
Q ss_pred hcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCc-ccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHH
Q psy12466 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNG-KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551 (680)
Q Consensus 476 ~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~-~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll 551 (680)
..+ .........+.+||+||+|.+... .....+.+.......+++++++....-...+.+-+
T Consensus 122 ---------~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 122 ---------SKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp ---------CTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred ---------chh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 000 001111235789999999998432 22334444444555667776655444334444433
No 206
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.44 E-value=3.7 Score=42.66 Aligned_cols=29 Identities=24% Similarity=0.173 Sum_probs=23.7
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
..+.+.+|.-+.|+|||..+-+++..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567889999999999999888877654
No 207
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.21 E-value=4.2 Score=38.63 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=21.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
...+|.-+.|+|||..+-+++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 357889999999999988887766543
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.01 E-value=3.1 Score=49.10 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=30.0
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|...+..+.+.+. .....+.+|.-++|+|||..+-+++..+..
T Consensus 175 r~~~i~~l~~~l~---~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 175 RDEEIRRVIQILL---RRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CHHHHHHHHHHHH---CSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh---cCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3344555544332 234567899999999999999888887755
No 209
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.81 E-value=0.99 Score=47.43 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=21.6
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
....+.+|.-+.|+|||..+-+++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34678899999999999998887754
No 210
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.66 E-value=0.8 Score=46.84 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=22.2
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
..+.+.+|.-++|+|||..+-+++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456788999999999999988877653
No 211
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.36 E-value=0.72 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=17.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHH
Q psy12466 400 AILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~ 421 (680)
.++.-.+|.|||..|++.+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 5677889999999988876544
No 212
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.03 E-value=3.2 Score=43.12 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.3
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+|.-+.|+|||..+-+++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34688999999999999888877654
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.93 E-value=2 Score=49.89 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=30.2
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|...+..+.+.+. .....+.+|.-+.|+|||..+-+++..+..
T Consensus 191 r~~~i~~l~~~l~---~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 191 REKELERAIQVLC---RRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp CHHHHHHHHHHHT---SSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---ccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3444555555432 235677899999999999999888877654
No 214
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.50 E-value=0.68 Score=41.72 Aligned_cols=25 Identities=16% Similarity=-0.057 Sum_probs=20.2
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIW 419 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~ 419 (680)
......+|.-++|+|||..|-++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999998876654
No 215
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=83.48 E-value=5.8 Score=37.21 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=62.0
Q ss_pred EcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec--cchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCC
Q psy12466 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP--SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480 (680)
Q Consensus 403 aDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P--~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 480 (680)
+---|.|||..++.++..+...+. ++|+|=- ..-+..|... ... ..
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g~-------~vlliD~D~~~~~~~~~~~-----~~~--------------------~~ 55 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSGY-------NIAVVDTDPQMSLTNWSKA-----GKA--------------------AF 55 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTC-------CEEEEECCTTCHHHHHHTT-----SCC--------------------SS
T ss_pred eCCCCccHHHHHHHHHHHHHHCCC-------eEEEEECCCCCCHHHHHhc-----CCC--------------------CC
Confidence 345689999999999999988653 4676653 3444555320 000 12
Q ss_pred CEEEEeHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhh
Q psy12466 481 PVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554 (680)
Q Consensus 481 ~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl 554 (680)
+++-...+.+...+..+.. .+|+||+|=.-.+ +.....+... +.. +++-.+|-..+ ..+..+++.+
T Consensus 56 ~~~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~----~~~~~~~l~~-ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 56 DVFTAASEKDVYGIRKDLA-DYDFAIVDGAGSL----SVITSAAVMV-SDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp EEEECCSHHHHHTHHHHTT-TSSEEEEECCSSS----SHHHHHHHHH-CSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred cEEecCcHHHHHHHHHhcC-CCCEEEEECCCCC----CHHHHHHHHH-CCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 3333333556665555544 5999999976544 2222222221 222 44444454445 6666665555
No 216
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.48 E-value=1.5 Score=44.69 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...|.+|.-++|+|||..|-+++..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34677888999999999998888776
No 217
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.28 E-value=2.3 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=20.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHH
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~ 421 (680)
.+.+|.-++|+|||..+-+++..+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999887776553
No 218
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.93 E-value=1.2 Score=52.07 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=47.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
....|.+|.-.+|+|||..|-+++.... .+++.|-...++..|..|-+
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~----------~~f~~v~~~~l~s~~vGese---------------------- 556 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ----------ANFISIKGPELLTMWFGESE---------------------- 556 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTT----------CEEEECCHHHHHTTTCSSCH----------------------
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhC----------CceEEeccchhhccccchHH----------------------
Confidence 3567899999999999998877775431 12454444555555522111
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCccccc
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK 514 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~k 514 (680)
..++.....-....+.+|++||+..+-
T Consensus 557 -------------~~vr~lF~~Ar~~~P~IifiDEiDsl~ 583 (806)
T 3cf2_A 557 -------------ANVREIFDKARQAAPCVLFFDELDSIA 583 (806)
T ss_dssp -------------HHHHHHHHHHHTTCSEEEECSCGGGCC
T ss_pred -------------HHHHHHHHHHHHcCCceeechhhhHHh
Confidence 112333333445668899999999873
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.63 E-value=5.4 Score=39.41 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=20.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.+|.-++|+|||..+-++....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 45788999999999998877766543
No 220
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.94 E-value=6.2 Score=41.45 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=29.3
Q ss_pred CcccHHHHHHHH-HhhhhhccCCCCceEE--EcCCCCChHHHHHHHHHHHHh
Q psy12466 375 KPHQRQGVSFLY-ERVCDLASLDLEGAIL--ADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 375 rpyQ~~gv~~l~-~~~~~~~~~~~~g~iL--aDemGlGKT~~aiali~~~~~ 423 (680)
|..+.+.+.-++ ..........+...+| .-+.|+|||..+-+++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 445555555444 3321100023445667 789999999999888877654
No 221
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.60 E-value=1.7 Score=47.35 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLL 422 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~ 422 (680)
.+++.+|.-.+|+|||..|-+++..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 457899999999999999999887753
No 222
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=81.40 E-value=0.83 Score=53.19 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=52.4
Q ss_pred eEEEEECcccH----HHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHH-----HHHH----HhhhcC
Q psy12466 194 RVLIVTPSSLT----SNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRAY----QTIVDT 260 (680)
Q Consensus 194 ~~LIV~P~sl~----~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l-----~~~~----~~l~~~ 260 (680)
.+|||||+--+ ..|-..+-++++ .++..++|+......... ...+|++.|-+.+ +... ..+...
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~lg-l~v~~i~GG~~~~~r~~~--~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~ 193 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFLG-LTVGINLPGMPAPAKREA--YAADITYGTNNEYGFDYLRDNMAFSPEERVQR 193 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHh--cCCCEEEECCchhhHHHHHhhhhccHhHhccc
Confidence 58999998765 468888888886 666666665432222221 2468999887665 2221 123446
Q ss_pred CCcEEEEcCCCCCCC
Q psy12466 261 EFDLLICDEKSLLKP 275 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN 275 (680)
+..++|+||||++-.
T Consensus 194 ~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 194 KLHYALVDEVDSILI 208 (853)
T ss_dssp SCCEEEESCHHHHTT
T ss_pred CCcEEEECchHHHHH
Confidence 789999999998763
No 223
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=81.39 E-value=3.8 Score=37.14 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=22.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
.+...+|.-+.|.|||..+-+++..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567888899999999998888876654
No 224
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.90 E-value=4.6 Score=39.07 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=35.8
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 454 (680)
.+.-.+++-++|+|||.-++.++......+. .+++++.-..-..+..+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~------~~v~~~s~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG------EPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC------CCEEEEESSSCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC------CCceeecccCCHHHHHHHHHHc
Confidence 3445899999999999999988765433321 2478887765555555555443
No 225
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=80.89 E-value=3.7 Score=39.32 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec-cchHHHHHHHHHHHhCCCCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP-SSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~ 474 (680)
..+..++.-..|-|||..|++++......+. +++|+-= +.....=..++.+-++ +.+............
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-------rV~~vQF~Kg~~~~gE~~~l~~L~---v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGK-------NVGVVQFIKGTWPNGERNLLEPHG---VEFQVMATGFTWETQ 96 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTC-------CEEEEESSCCSSCCHHHHHHGGGT---CEEEECCTTCCCCGG
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEeeCCCCCccHHHHHHhCC---cEEEEcccccccCCC
Confidence 3456778899999999999999988888764 5777732 1110000111111112 111111110000000
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhhhccCceEEEEcCcccc---c-CcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHH
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRL---K-NGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l~~~~~~~vIlDEaH~~---k-n~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sl 550 (680)
... .+ .-.--..+......+.+..+|+||+||.-.. . -+.......+..-....-+++||--. +.+|..+
T Consensus 97 ~~~--~~-~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a---p~~l~e~ 170 (196)
T 1g5t_A 97 NRE--AD-TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC---HRDILDL 170 (196)
T ss_dssp GHH--HH-HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC---CHHHHHH
T ss_pred CcH--HH-HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC---cHHHHHh
Confidence 000 00 0000122233344566678999999998432 1 12334555555545556699999654 4455444
Q ss_pred Hhhh
Q psy12466 551 NDFA 554 (680)
Q Consensus 551 l~fl 554 (680)
.+++
T Consensus 171 AD~V 174 (196)
T 1g5t_A 171 ADTV 174 (196)
T ss_dssp CSEE
T ss_pred Ccce
Confidence 4443
No 226
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.59 E-value=1.2 Score=44.99 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.+|.-+.|+|||..+-+++..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45788999999999999888777543
No 227
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=80.43 E-value=17 Score=39.10 Aligned_cols=116 Identities=13% Similarity=0.003 Sum_probs=63.9
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCee-EeecCCcchh--
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKNKA-- 471 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~-~~~~~~~~~~-- 471 (680)
..+.-.+|+-.+|+|||.-++.++........ .+++++....-..++...+.......... +..+.-....
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~ 271 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEG------VGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFS 271 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------CCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHH
Confidence 34555899999999999999999887765321 25888887655556655543222111100 0011000000
Q ss_pred --hh-hhhcCCCCEEEE-----eHHHHHHHHHhhh-ccCceEEEEcCcccccCc
Q psy12466 472 --ED-YVYSRVSPVLII-----SYEMLIRAYQTIV-DTEFDLLICDEGHRLKNG 516 (680)
Q Consensus 472 --~~-~~~~~~~~vvI~-----ty~~l~~~~~~l~-~~~~~~vIlDEaH~~kn~ 516 (680)
.. ........++|. +...+......+. ..+.++||+|..+.+...
T Consensus 272 ~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 272 RLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence 00 000112345553 3444544444333 457999999999988643
No 228
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=79.95 E-value=1.2 Score=52.19 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=53.0
Q ss_pred CeEEEEECcccH----HHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHH-----HHHH----Hhhhc
Q psy12466 193 LRVLIVTPSSLT----SNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRAY----QTIVD 259 (680)
Q Consensus 193 ~~~LIV~P~sl~----~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l-----~~~~----~~l~~ 259 (680)
+.++||||+--+ .+|-..|-+|++ .++.+..++......... ...+|++.|=+.+ +... ..+..
T Consensus 153 ~~v~VvTpTreLA~Qdae~m~~l~~~lG-Lsv~~i~gg~~~~~r~~~--y~~DIvygTpgrlgfDyLrD~m~~~~~~l~l 229 (922)
T 1nkt_A 153 NGVHIVTVNDYLAKRDSEWMGRVHRFLG-LQVGVILATMTPDERRVA--YNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 229 (922)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHh--cCCCEEEECchHhhHHHHHhhhhccHhhhcc
Confidence 469999997765 479999999987 667666665432222211 2368888876655 3221 13444
Q ss_pred CCCcEEEEcCCCCCCC
Q psy12466 260 TEFDLLICDEKSLLKP 275 (680)
Q Consensus 260 ~~~~~vI~DEaH~lKN 275 (680)
.++.++|+|||++|-.
T Consensus 230 r~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 230 RGHHYAIVDEVDSILI 245 (922)
T ss_dssp CCCCEEEETTHHHHHT
T ss_pred CCCCEEEEeChHHHHH
Confidence 5789999999998753
No 229
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=79.76 E-value=2.2 Score=46.91 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=21.3
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
....+.+|.-++|+|||..+-+++..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 45678899999999999988877654
No 230
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=79.66 E-value=3 Score=45.38 Aligned_cols=51 Identities=6% Similarity=-0.036 Sum_probs=31.7
Q ss_pred eEEEEeccc-hHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEe
Q psy12466 434 KVLIVTPSS-LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIIS 486 (680)
Q Consensus 434 ~~LIV~P~s-ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~t 486 (680)
++||.||.- -+....+.+.+. ...+..+++..+.........+..+|+|+|
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRKSYDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT--TCCEEEESTTCCCCCGGGSSSCCCSEEEES
T ss_pred CEEEEeCChHHHHHHHHHHHhc--CCcEEecCHHHHHHHHhhccCCCceEEEEC
Confidence 489999973 334444445443 456777777654444444445677888888
No 231
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.52 E-value=6.8 Score=40.49 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=24.1
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
..+...+|.-+.|+|||..+-+++..+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 345678899999999999998888776654
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.28 E-value=2.8 Score=48.89 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=20.9
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIW 419 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~ 419 (680)
...+|.+|.-.+|+|||..|=+++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999998877764
No 233
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.16 E-value=4.8 Score=44.03 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=21.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...|.+|.-++|+|||..+-+++...
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35678999999999999888777543
No 234
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=78.69 E-value=5.2 Score=39.19 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=25.1
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
-..++.-..|.|||..++.++..+...|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~ 35 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGV 35 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 45788899999999999999999988763
No 235
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.39 E-value=5.1 Score=41.33 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=28.3
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|...+..+...+.. ......+|.-+.|+|||..+-+++..+..
T Consensus 30 ~~~~~~~L~~~i~~---g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDE---GKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHT---TCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 55555555443221 12223788999999999999988877653
No 236
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.34 E-value=5.6 Score=43.91 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.4
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
.++.+|.-+.|+|||..+-+++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999998887765
No 237
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=77.86 E-value=26 Score=35.72 Aligned_cols=114 Identities=11% Similarity=-0.029 Sum_probs=63.7
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEe-ecC----Ccc
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPY-HVN----QKN 469 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~-~~~----~~~ 469 (680)
..+.-.+|+-.+|+|||.-++.++......+ .++|++.-..-..+....+..........-+ .+. ...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-------~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~ 138 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND-------DVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASED 138 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-------CEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHH
Confidence 3455689999999999999999887766543 3689998765555555555443222111100 000 000
Q ss_pred --hhhh-hhhcCCCCEEEE-----eHHHHHHHHHhhh-ccCce--EEEEcCcccccC
Q psy12466 470 --KAED-YVYSRVSPVLII-----SYEMLIRAYQTIV-DTEFD--LLICDEGHRLKN 515 (680)
Q Consensus 470 --~~~~-~~~~~~~~vvI~-----ty~~l~~~~~~l~-~~~~~--~vIlDEaH~~kn 515 (680)
+... ........++|. +.+.+...+..+. ....+ +||+|-.+.+..
T Consensus 139 ~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 139 WGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp HHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBC
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCC
Confidence 0000 000112345443 4455554444443 34678 999999998764
No 238
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=77.68 E-value=5.8 Score=44.94 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=41.5
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHH-hhhcCCCcEEEEcCC
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-TIVDTEFDLLICDEK 270 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~-~l~~~~~~~vI~DEa 270 (680)
.++||++|... ..++.++|.. ..+. |.+.... .......-+.+++++.+..... ...-..+++||+|||
T Consensus 216 ~~vLvl~PtreLa~Qi~~~l~~----~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEa 286 (618)
T 2whx_A 216 LRTLILAPTRVVAAEMEEALRG----LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEA 286 (618)
T ss_dssp CCEEEEESSHHHHHHHHHHTTT----SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEEST
T ss_pred CeEEEEcChHHHHHHHHHHhcC----Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECC
Confidence 47999999765 4566666652 2332 2221100 1112223466778887754332 212256899999999
Q ss_pred CCC
Q psy12466 271 SLL 273 (680)
Q Consensus 271 H~l 273 (680)
|++
T Consensus 287 h~~ 289 (618)
T 2whx_A 287 HFT 289 (618)
T ss_dssp TCC
T ss_pred CCC
Confidence 997
No 239
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=77.55 E-value=2.1 Score=38.34 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=18.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALI 418 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali 418 (680)
...+.+|.-++|+|||..|-++.
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCcEEEECCCCccHHHHHHHHH
Confidence 45679999999999998775544
No 240
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=77.41 E-value=1.5 Score=51.08 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=52.5
Q ss_pred CeEEEEECcccHH----HHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHH-----HHHH----Hhhhc
Q psy12466 193 LRVLIVTPSSLTS----NWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML-----IRAY----QTIVD 259 (680)
Q Consensus 193 ~~~LIV~P~sl~~----nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l-----~~~~----~~l~~ 259 (680)
+.+|||||+-=+. .|-..|.+|++ .++.+.+++.....+... ...+|++.|=+.+ +... ..+..
T Consensus 125 ~~vlVltptreLA~qd~e~~~~l~~~lg-l~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~l 201 (844)
T 1tf5_A 125 KGVHVVTVNEYLASRDAEQMGKIFEFLG-LTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQ 201 (844)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcc
Confidence 3689999977653 58888988886 667666665432222221 2468998886666 3321 12334
Q ss_pred CCCcEEEEcCCCCCC
Q psy12466 260 TEFDLLICDEKSLLK 274 (680)
Q Consensus 260 ~~~~~vI~DEaH~lK 274 (680)
.+..++|+|||++|-
T Consensus 202 r~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 202 RPLHFAVIDEVDSIL 216 (844)
T ss_dssp CCCCEEEEETHHHHH
T ss_pred cCCCEEEECchhhhh
Confidence 678899999999975
No 241
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=77.35 E-value=19 Score=38.80 Aligned_cols=115 Identities=8% Similarity=-0.019 Sum_probs=61.2
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHH-HhCCCCeeEeecCCcch---
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK-WLGLTRMCPYHVNQKNK--- 470 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~-~~~~~~v~~~~~~~~~~--- 470 (680)
..+.-.+|+-.+|+|||..++.++........ .+++++....-..+....+.. ..+...-.+..+.-...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g------~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~ 274 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTN------ENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWG 274 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS------CCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC------CcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHH
Confidence 34556899999999999999999887765321 248888876444454444321 11100000000100000
Q ss_pred -hhh-hhhcCCCCEEEE-----eHHHHHHHHHhhh-ccCceEEEEcCcccccC
Q psy12466 471 -AED-YVYSRVSPVLII-----SYEMLIRAYQTIV-DTEFDLLICDEGHRLKN 515 (680)
Q Consensus 471 -~~~-~~~~~~~~vvI~-----ty~~l~~~~~~l~-~~~~~~vIlDEaH~~kn 515 (680)
... .......+++|. +.+.+......+. ..+.++||+|+.+.+..
T Consensus 275 ~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 275 KLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 000 000112345543 3444444444433 45799999999998864
No 242
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=77.15 E-value=7.8 Score=39.72 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=20.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~ 425 (680)
.++.-..|.|||.++..++..+...+
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g 132 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEG 132 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 34556799999999988888877654
No 243
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=76.56 E-value=6.6 Score=44.77 Aligned_cols=70 Identities=27% Similarity=0.310 Sum_probs=50.1
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHH
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEF 451 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~ 451 (680)
.|.|.|+++|.. ..+..++....|+|||.+.+.-+..+....+. ....+|+|+.+ .....-.+.+
T Consensus 2 ~L~~~Q~~av~~-----------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---~~~~IL~lTfT~~Aa~em~~Rl 67 (673)
T 1uaa_A 2 RLNPGQQQAVEF-----------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---QARHIAAVTFTNKAAREMKERV 67 (673)
T ss_dssp CCCHHHHHHHHC-----------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---CGGGEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHH
Confidence 367889999843 23567778899999999998877776654211 12469999986 5567777778
Q ss_pred HHHhC
Q psy12466 452 KKWLG 456 (680)
Q Consensus 452 ~~~~~ 456 (680)
.+..+
T Consensus 68 ~~~l~ 72 (673)
T 1uaa_A 68 GQTLG 72 (673)
T ss_dssp HHHSC
T ss_pred HHHcC
Confidence 77765
No 244
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.50 E-value=1.1 Score=45.40 Aligned_cols=42 Identities=26% Similarity=0.273 Sum_probs=27.8
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHH
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~ 422 (680)
|...+..+.+.+. .....+.+|.-+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 22 QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CHHHHHHHHTTTT---TTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---CCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 4445555443321 12233589999999999999988887764
No 245
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=76.40 E-value=2.5 Score=48.43 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=47.3
Q ss_pred eEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCCC
Q psy12466 194 RVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSL 272 (680)
Q Consensus 194 ~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~ 272 (680)
+.+|++|.-. ..++.+++++. + .++..+.|+... ......+..++++++.+++. ....+++||+||+|+
T Consensus 181 ~gl~l~PtR~LA~Qi~~~l~~~-g-~~v~lltG~~~~--iv~TpGr~~~il~~T~e~~~------l~~~v~lvVIDEaH~ 250 (677)
T 3rc3_A 181 SGVYCGPLKLLAHEIFEKSNAA-G-VPCDLVTGEERV--TVQPNGKQASHVSCTVEMCS------VTTPYEVAVIDEIQM 250 (677)
T ss_dssp SEEEEESSHHHHHHHHHHHHHT-T-CCEEEECSSCEE--CCSTTCCCCSEEEEEGGGCC------SSSCEEEEEECSGGG
T ss_pred CeEEEeCHHHHHHHHHHHHHhc-C-CcEEEEECCeeE--EecCCCcccceeEecHhHhh------hcccCCEEEEeccee
Confidence 4599999766 46788888775 2 455555554322 11112234678999987663 234579999999999
Q ss_pred CCCC
Q psy12466 273 LKPP 276 (680)
Q Consensus 273 lKN~ 276 (680)
+-+.
T Consensus 251 l~d~ 254 (677)
T 3rc3_A 251 IRDP 254 (677)
T ss_dssp GGCT
T ss_pred cCCc
Confidence 9544
No 246
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=75.98 E-value=32 Score=32.19 Aligned_cols=44 Identities=16% Similarity=0.027 Sum_probs=29.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc--hHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS--LTSNWND 449 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s--ll~qW~~ 449 (680)
.+.-.+|.-..|.|||..+..++. ..+ .+++++.-.. -...|.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~-------~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSG-------KKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHC-------SEEEEEESSCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcC-------CcEEEEECCCCCCHHHHHH
Confidence 445578889999999999888876 222 2477776543 3455554
No 247
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=75.45 E-value=17 Score=34.81 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=35.2
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFK 452 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~ 452 (680)
.+.-.+|+-+.|.|||..++.++......+. +++++.-.....+..+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~-------~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE-------PGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC-------CEEEEESSSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-------eEEEEEccCCHHHHHHHHH
Confidence 3445688899999999999988877765432 4788877655555554444
No 248
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.36 E-value=4.3 Score=41.02 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=21.6
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+|.-+.|+|||..+-+++..+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 35788999999999999888877654
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=75.36 E-value=15 Score=37.32 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=19.5
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
-.++.-..|.|||.++..++..+..
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3445567899999999888887775
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=74.41 E-value=31 Score=32.46 Aligned_cols=49 Identities=24% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
.+.-.+|.-+.|.|||..+..++..+...+. +++++.......+....+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-------~v~~~~~~~~~~~~~~~~ 70 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGD-------PCIYVTTEESRDSIIRQA 70 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTC-------CEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEcccCHHHHHHHH
Confidence 3445678899999999998888866655432 367766544443333333
No 251
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=74.33 E-value=17 Score=37.72 Aligned_cols=113 Identities=11% Similarity=0.059 Sum_probs=61.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCee-EeecCCcc----h
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKN----K 470 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~-~~~~~~~~----~ 470 (680)
.+.=.+|+-.+|+|||.-++.++......+ .+++++....-..+....+.......... +..+.-.. +
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g-------~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~ 117 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDD-------RGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWEN 117 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-------CEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHH
Confidence 445589999999999999999988777643 36899887655555544442221111100 00010000 0
Q ss_pred hhh-hhhcCCCCEEEE-----eHHHHHHHHHhhhc-c-CceEEEEcCcccccC
Q psy12466 471 AED-YVYSRVSPVLII-----SYEMLIRAYQTIVD-T-EFDLLICDEGHRLKN 515 (680)
Q Consensus 471 ~~~-~~~~~~~~vvI~-----ty~~l~~~~~~l~~-~-~~~~vIlDEaH~~kn 515 (680)
... .......+++|. +...+......+.. . ..++||||--|.+..
T Consensus 118 l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 118 LAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred HHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 000 000012234443 33445554554443 3 699999999998865
No 252
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.17 E-value=12 Score=38.48 Aligned_cols=44 Identities=27% Similarity=0.412 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHH
Q psy12466 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422 (680)
Q Consensus 377 yQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~ 422 (680)
.|...+..+.+.+. ........+|.-+.|+|||..+-+++..+.
T Consensus 18 g~~~~~~~l~~~~~--~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 18 HNEELTNFLKSLSD--QPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp SCHHHHHHHHTTTT--CTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCHHHHHHHHHHHh--hCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 46666666654320 112223388899999999998888877554
No 253
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=73.39 E-value=1.9 Score=50.61 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=50.6
Q ss_pred CeEEEEECcccH----HHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHH-HHH-Hh-------hhc
Q psy12466 193 LRVLIVTPSSLT----SNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI-RAY-QT-------IVD 259 (680)
Q Consensus 193 ~~~LIV~P~sl~----~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~-~~~-~~-------l~~ 259 (680)
+.++||||+--+ .+|-..|-++++ .++....++......... ...+|++.|-..+. .+. +. +.-
T Consensus 121 ~qv~VvTPTreLA~Qdae~m~~l~~~lG-Lsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~ 197 (997)
T 2ipc_A 121 KGVHVVTVNDYLARRDAEWMGPVYRGLG-LSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVL 197 (997)
T ss_dssp SCCEEEESSHHHHHHHHHHHHHHHHTTT-CCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCS
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhccc
Confidence 368999998875 458888888887 566666555432222222 24689988866662 111 11 222
Q ss_pred C---CCcEEEEcCCCCCC
Q psy12466 260 T---EFDLLICDEKSLLK 274 (680)
Q Consensus 260 ~---~~~~vI~DEaH~lK 274 (680)
. +..++|+||+|++-
T Consensus 198 r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 198 RHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CSSSSSCEEEETTHHHHT
T ss_pred ccCCCcceEEEechHHHH
Confidence 3 68899999999765
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=73.12 E-value=22 Score=36.52 Aligned_cols=34 Identities=29% Similarity=0.269 Sum_probs=24.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
..+.-..|.|||.++..++..+...+. +++++.-
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g~-------kVllid~ 141 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELGY-------KVLIAAA 141 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC-------CEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEeC
Confidence 344467999999999888888776542 4666643
No 255
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=72.59 E-value=8 Score=39.41 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=20.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
.....+|.-++|+|||..|-++...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHHh
Confidence 4567899999999999988776654
No 256
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=72.47 E-value=3.9 Score=47.66 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=47.1
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHh-hhcCCCcEEEEcCC
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQT-IVDTEFDLLICDEK 270 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~-l~~~~~~~vI~DEa 270 (680)
.+++|++|... ..++.+.+.+.++ ..+...++.... .........+|+++|.+.+.+.... ..-..+++||+||+
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~-~~v~~~vG~~i~--~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEa 217 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMD-VKLGEEVGYSIR--FENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEA 217 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTT-CCBTTTEEEEET--TEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSG
T ss_pred ceEEecCchHHHHHHHHHHHHHHhC-Cchhheecceec--cccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCc
Confidence 46899999755 4567777776664 333322332111 0111224567999999988765432 22356899999999
Q ss_pred CC
Q psy12466 271 SL 272 (680)
Q Consensus 271 H~ 272 (680)
|.
T Consensus 218 h~ 219 (773)
T 2xau_A 218 HE 219 (773)
T ss_dssp GG
T ss_pred cc
Confidence 93
No 257
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=72.19 E-value=19 Score=36.63 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
...+.+|.-+.|+|||..+-+++..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4467899999999999988877554
No 258
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=69.82 E-value=21 Score=36.08 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=24.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
.+.-..|.|||..+..++..+...+. +++++.-
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~~~~-------~v~l~~~ 134 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKGKGR-------RPLLVAA 134 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHTTC-------CEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEecC
Confidence 34468899999999988888776542 3666654
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=69.49 E-value=7.3 Score=40.70 Aligned_cols=45 Identities=9% Similarity=-0.059 Sum_probs=33.0
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNW 447 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW 447 (680)
.+.-.+|+-+.|+|||..++.++......+. +++++.-.....++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~-------~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGG-------IAAFIDAEHALDPE 104 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTC-------CEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-------eEEEEECCCCcCHH
Confidence 4455788899999999999999887776542 47777766544444
No 260
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=69.14 E-value=28 Score=37.47 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=63.9
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEe-ecC----Ccc
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPY-HVN----QKN 469 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~-~~~----~~~ 469 (680)
..+.-.+|+-.+|+|||.-++.++......+ .+++++.-..-..+....+..........-+ .+. ...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g-------~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~ 267 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDND-------DVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASED 267 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTT-------CEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcC-------CEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHH
Confidence 3455689999999999999999998877653 2589988765445554444332221111000 000 000
Q ss_pred --hhhh-hhhcCCCCEEEE-----eHHHHHHHHHhh-hccCce--EEEEcCcccccC
Q psy12466 470 --KAED-YVYSRVSPVLII-----SYEMLIRAYQTI-VDTEFD--LLICDEGHRLKN 515 (680)
Q Consensus 470 --~~~~-~~~~~~~~vvI~-----ty~~l~~~~~~l-~~~~~~--~vIlDEaH~~kn 515 (680)
+... .......+++|. +.+.+......+ ...+.+ +||||=-+.+..
T Consensus 268 ~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~ 324 (444)
T 3bgw_A 268 WGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 324 (444)
T ss_dssp HHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBC
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccC
Confidence 0000 000112345552 455555544443 334789 999999988764
No 261
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.93 E-value=6.8 Score=45.39 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.9
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
..+|.-++|+|||..|-+++..+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~ 548 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD 548 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 48889999999999999888777543
No 262
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=68.86 E-value=1.7 Score=49.34 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=25.6
Q ss_pred CCCCEEEEehhHHHHHHH---h---h-hcCCCcEEEEcCCCCCCCC
Q psy12466 238 RVSPVLIISYEMLIRAYQ---T---I-VDTEFDLLICDEKSLLKPP 276 (680)
Q Consensus 238 ~~~~V~itsYe~l~~~~~---~---l-~~~~~~~vI~DEaH~lKN~ 276 (680)
...+|+|++|..+....- . + ....-++||+||||+|=+.
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~ 219 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDI 219 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHH
T ss_pred hcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHH
Confidence 346999999987643221 1 1 1233458999999999654
No 263
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=67.24 E-value=34 Score=34.55 Aligned_cols=24 Identities=17% Similarity=-0.060 Sum_probs=20.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHHH
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~ 421 (680)
+..++.-+.|+|||..+-.++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 577888999999999888877654
No 264
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=67.18 E-value=11 Score=40.62 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=26.5
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhc-CCCCCCccceEEEEec
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQ-GPYGMPVIRKVLIVTP 440 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~-~~~~~~~~~~~LIV~P 440 (680)
..+++--.|.|||.++..++..+... +. ++++|.-
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-------kVllvd~ 137 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKK-------KVLVVSA 137 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCC-------CEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC-------eEEEEec
Confidence 34455678999999999999999886 53 4666654
No 265
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=66.99 E-value=4.6 Score=46.23 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=32.5
Q ss_pred eEEEEeccc-hHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEe
Q psy12466 434 KVLIVTPSS-LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIIS 486 (680)
Q Consensus 434 ~~LIV~P~s-ll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~t 486 (680)
++||+||.- -.....+.+.+. ..++..+|+..+.........+..+|+|+|
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~--g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRA--GKRVIQLNRKSYDTEYPKCKNGDWDFVITT 463 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT--TCCEEEECSSSHHHHGGGGGTCCCSEEEEC
T ss_pred CEEEEECCHHHHHHHHHHHHhC--CCeEEEeChHHHHHHHHHHHCCCceEEEEC
Confidence 489999973 334444445443 467888888544444444455677899998
No 266
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=66.64 E-value=22 Score=37.28 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=54.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCC-CCeeEeecCCcchhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGL-TRMCPYHVNQKNKAEDY 474 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~-~~v~~~~~~~~~~~~~~ 474 (680)
.+.-.+|+-+.|+|||..++.++......+. ++++|.......+|.. .++--+ .++.+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~-------~vlyi~~E~s~~~~~a--~~~g~d~~~l~i~~~--------- 134 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGG-------TCAFIDAEHALDPVYA--RALGVNTDELLVSQP--------- 134 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTC-------CEEEEESSCCCCHHHH--HHTTCCGGGCEEECC---------
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCC-------eEEEEECCCChhHHHH--HHcCCCHHHceeecC---------
Confidence 4456788999999999999999888766542 4788887766655531 221101 01111100
Q ss_pred hhcCCCCEEEEeHHHHHHHHHhh-hccCceEEEEcCccccc
Q psy12466 475 VYSRVSPVLIISYEMLIRAYQTI-VDTEFDLLICDEGHRLK 514 (680)
Q Consensus 475 ~~~~~~~vvI~ty~~l~~~~~~l-~~~~~~~vIlDEaH~~k 514 (680)
.+.+.+......+ ....+++||||....+.
T Consensus 135 ----------~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 135 ----------DNGEQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp ----------SSHHHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred ----------CcHHHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 1223333333333 34579999999998875
No 267
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=65.92 E-value=25 Score=41.20 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=21.7
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
...+|.-++|+|||..|-++...+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35788899999999999888877654
No 268
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=65.65 E-value=12 Score=43.23 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=48.5
Q ss_pred ccccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc-hHHHHHH
Q psy12466 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS-LTSNWND 449 (680)
Q Consensus 371 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~ 449 (680)
-..|-|.|+++|.. ..+..++-...|+|||.+.+.-+..+...... ....+|+|+.+. ....-.+
T Consensus 9 l~~Ln~~Q~~av~~-----------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~---~p~~IL~vTFTnkAA~Em~~ 74 (724)
T 1pjr_A 9 LAHLNKEQQEAVRT-----------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV---APWNILAITFTNKAAREMRE 74 (724)
T ss_dssp HTTSCHHHHHHHHC-----------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC---CGGGEEEEESSHHHHHHHHH
T ss_pred HhhCCHHHHHHHhC-----------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHH
Confidence 34688999999943 23556777889999999998888777764321 124699999864 3345555
Q ss_pred HHHHHh
Q psy12466 450 EFKKWL 455 (680)
Q Consensus 450 E~~~~~ 455 (680)
.+.+..
T Consensus 75 Rl~~~l 80 (724)
T 1pjr_A 75 RVQSLL 80 (724)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 269
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=65.50 E-value=4.2 Score=43.88 Aligned_cols=51 Identities=6% Similarity=0.031 Sum_probs=29.5
Q ss_pred eEEEEecc-chHHHHHHHHHHHhCCCCeeEeecCCcchhhhhhhcCCCCEEEEe
Q psy12466 434 KVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIIS 486 (680)
Q Consensus 434 ~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvI~t 486 (680)
++||+||. .-.....+.+.+. ..++..+|+..+.........+..+|+|+|
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~--~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT 230 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA--GKSVVVLNRKTFEREYPTIKQKKPDFILAT 230 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT--TCCEEECCSSSCC--------CCCSEEEES
T ss_pred CEEEEeCCHHHHHHHHHHHHHc--CCCEEEecchhHHHHHhhhcCCCceEEEEC
Confidence 48999997 3445555555553 467888888544444444445677899888
No 270
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=63.04 E-value=16 Score=41.60 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=33.8
Q ss_pred ccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 373 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
.+-..|.+++..+.+. ..+-.+|-.+-|-|||..+-.++..+. . .++|.+|+
T Consensus 175 ~~T~dQ~~al~~~~~~-------~~~~~vlta~RGRGKSa~lG~~~a~~~--~--------~~~vtAP~ 226 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTM-------PPGVAAVTAARGRGKSALAGQLISRIA--G--------RAIVTAPA 226 (671)
T ss_dssp SCCHHHHHHHHHHTTC-------CSEEEEEEECTTSSHHHHHHHHHHHSS--S--------CEEEECSS
T ss_pred CCCHHHHHHHHHHHHh-------hhCeEEEecCCCCCHHHHHHHHHHHHH--h--------CcEEECCC
Confidence 5667899999877542 123357777899999955444443332 1 26888996
No 271
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=62.36 E-value=40 Score=34.33 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=30.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccch
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSL 443 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sl 443 (680)
.+.-.+++-+.|+|||..++.++.........+. ...++++|.-...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg-~~~~vlyi~~e~~ 152 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG-LSGKAVYIDTEGT 152 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC-CSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC-CCCeEEEEECCCC
Confidence 4455789999999999999988876433210000 0246788877643
No 272
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=62.22 E-value=16 Score=37.14 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=25.3
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHH-hcC
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLL-RQG 425 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~-~~~ 425 (680)
+.+.+|.-++|+|||..+.+++..+. ..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g 181 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG 181 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999998887 654
No 273
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=61.97 E-value=20 Score=41.28 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.9
Q ss_pred ceEEEcCCCCChHHHHHHHHHHH
Q psy12466 399 GAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~ 421 (680)
..+|.-++|+|||..|-+++..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 57889999999999998887766
No 274
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=61.92 E-value=22 Score=38.08 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=25.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
.+++-..|.|||..+..++..+...+. +++++.-
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g~-------~Vllvd~ 134 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKGR-------RPLLVAA 134 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTC-------CEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEeec
Confidence 445578999999999998888876542 4666654
No 275
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.46 E-value=39 Score=35.24 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=31.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
.+.-.+|+-..|+|||..++.++......+. ++++|....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~-------~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK-------TCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEeCCC
Confidence 4556888999999999999999988776542 478777753
No 276
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=58.20 E-value=68 Score=33.31 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=25.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT 439 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~ 439 (680)
++.+---|.|||..++.++..+...+. ++|+|=
T Consensus 147 av~s~KGGvGKTT~a~nLA~~La~~g~-------rVlliD 179 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAACAIAHANMGK-------KVFYLN 179 (373)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHHTC-------CEEEEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHhCCC-------CEEEEE
Confidence 344457789999999999999888753 477775
No 277
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=57.08 E-value=28 Score=37.96 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=54.7
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc-chHHHHHHHHHHHhCCCCeeEeecC--------Cc
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLTRMCPYHVN--------QK 468 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~~~~~v~~~~~~--------~~ 468 (680)
....|.--.|.|||+.+.+++... + +|+|||||+ ....+|.+++..|+|.. |..+-.. ..
T Consensus 15 ~~~~l~g~~gs~ka~~~a~l~~~~---~-------~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p 83 (483)
T 3hjh_A 15 EQRLLGELTGAACATLVAEIAERH---A-------GPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSP 83 (483)
T ss_dssp CEEEEECCCTTHHHHHHHHHHHHS---S-------SCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCC
T ss_pred CeEEEeCCCchHHHHHHHHHHHHh---C-------CCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCC
Confidence 345677889999999887776431 1 358999998 66699999999998864 4443221 11
Q ss_pred ch------h--hhhhhcCCCCEEEEeHHHHH
Q psy12466 469 NK------A--EDYVYSRVSPVLIISYEMLI 491 (680)
Q Consensus 469 ~~------~--~~~~~~~~~~vvI~ty~~l~ 491 (680)
.. . ......+...|+|++.+.+.
T Consensus 84 ~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~ 114 (483)
T 3hjh_A 84 HQDIISSRLSTLYQLPTMQRGVLIVPVNTLM 114 (483)
T ss_dssp CHHHHHHHHHHHHHGGGCCSSEEEEEHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCEEEEEHHHHh
Confidence 11 0 01122345679999988875
No 278
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=53.33 E-value=1.1e+02 Score=28.94 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=20.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
.+.-..|.-+.|.|||..+..++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3455678889999999999888765
No 279
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=53.00 E-value=22 Score=38.27 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=26.4
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
..+++-..|.|||..+..++..+...+. ++++|.-
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~-------kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGL-------KPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHC-------CEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEEec
Confidence 4556667999999999999988876643 3666654
No 280
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=52.90 E-value=29 Score=38.91 Aligned_cols=53 Identities=15% Similarity=0.040 Sum_probs=32.2
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCC-------CCCCccceEEEEeccchHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGP-------YGMPVIRKVLIVTPSSLTSNWN 448 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~-------~~~~~~~~~LIV~P~sll~qW~ 448 (680)
.+...+|.-+.|+|||..+-+++..+..... .......+.+.+||.....+-.
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~ 118 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIV 118 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHH
Confidence 3468899999999999988777765432210 0001124567777765544433
No 281
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=52.04 E-value=64 Score=33.59 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=30.7
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTS 445 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~ 445 (680)
+.-.+|.-+.|.|||..++.++..+...+. ++++|.......
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg-------~VlyId~E~s~~ 102 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGG-------VAAFIDAEHALD 102 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTC-------CEEEEESSCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCC-------eEEEEecccccc
Confidence 334667788999999999999887776542 478887765443
No 282
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=51.84 E-value=1.3e+02 Score=29.37 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=33.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCC-CC--CccceEEEEeccchHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPY-GM--PVIRKVLIVTPSSLTSNWNDEFKK 453 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~-~~--~~~~~~LIV~P~sll~qW~~E~~~ 453 (680)
.+.-.+|.-..|.|||..+..++..+...... +. ....+++++.-.....+....+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~ 89 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 89 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHH
Confidence 34557788899999999998888755431100 00 001357777665444444333333
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=51.70 E-value=28 Score=35.25 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=24.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
.++.-..|.|||..+..++..+...+. +++++.-
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g~-------~v~l~~~ 134 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKGF-------KVGLVGA 134 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTTC-------CEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEec
Confidence 344568999999999888888776543 3666654
No 284
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=51.62 E-value=19 Score=35.05 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=20.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...|.+|.-+.|+|||..+-+++..+
T Consensus 48 ~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 48 IPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999998887776543
No 285
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=51.07 E-value=42 Score=43.13 Aligned_cols=44 Identities=14% Similarity=0.023 Sum_probs=34.7
Q ss_pred cCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH
Q psy12466 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444 (680)
Q Consensus 394 ~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll 444 (680)
...+.+.+|.-.+|+|||..|++++......+. +++++.....+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~-------~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-------TCAFIDAEHAL 1467 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC-------CEEEECTTSCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------cEEEEEccccc
Confidence 446778999999999999999999887776553 47788776544
No 286
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=50.22 E-value=26 Score=42.61 Aligned_cols=51 Identities=27% Similarity=0.345 Sum_probs=37.3
Q ss_pred EEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhC
Q psy12466 402 LADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLG 456 (680)
Q Consensus 402 LaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~ 456 (680)
+-.-.|+|||.+.+.-+..+...++. ..++|+|||.....+-.+.+.+..+
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~~----~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAPF----GKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCTT----SSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCCC----CCcEEEEecCcccHHHHHHHHHhhh
Confidence 44458999999999888887766542 2469999999887775555655444
No 287
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=49.66 E-value=1.1e+02 Score=31.20 Aligned_cols=46 Identities=20% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
.+.-.+|+-+.|+|||..++.++.........+. ..+++++|.-..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg-~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY-PGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB-CCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC-CCCeEEEEECCC
Confidence 3445788999999999999988876432110000 124678887754
No 288
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=49.24 E-value=18 Score=34.24 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=27.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
+|.+-..|.|||.+++.++..+...+. ++|++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~G~-------rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAAGY-------RTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC-------CEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-------CEEEEcc
Confidence 355567899999999999999988763 4788765
No 289
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=48.62 E-value=32 Score=35.25 Aligned_cols=20 Identities=30% Similarity=0.116 Sum_probs=16.5
Q ss_pred CCCCChHHHHHHHHHHHHhc
Q psy12466 405 EMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 405 emGlGKT~~aiali~~~~~~ 424 (680)
-=|+|||-.++.++..+...
T Consensus 46 vGGTGKTP~vi~L~~~L~~~ 65 (315)
T 4ehx_A 46 VGGSGKTSFVMYLADLLKDK 65 (315)
T ss_dssp SSCCSHHHHHHHHHHHTTTS
T ss_pred eCCCChHHHHHHHHHHHhhc
Confidence 35899999999999888653
No 290
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=48.21 E-value=52 Score=33.94 Aligned_cols=41 Identities=20% Similarity=0.032 Sum_probs=30.7
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll 444 (680)
-..++-+.|.|||..++.++......++ .++++.|.....+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~-----g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYP-----DAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCT-----TCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC-----CceEEEEeccchh
Confidence 4678899999999999999888776532 1357888876444
No 291
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=47.62 E-value=34 Score=43.86 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHHHHHHHHHHhCCCCeeEeecCCcchhhhhh
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV 475 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 475 (680)
.+.-.+|+-++|+|||..++.++......+ .+++++.-.....+|.. .+ ++..
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~g-------~~VlyiS~Ees~~ql~A--~r-lG~~----------------- 783 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDPIYA--RK-LGVD----------------- 783 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT-------CCEEEECTTSCCCHHHH--HH-TTCC-----------------
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC-------CcEEEEECCCcHHHHHH--HH-cCCC-----------------
Confidence 445578999999999999999998877543 25899988877788852 22 2210
Q ss_pred hcCCCCEEEE---eHHHHHHHHHhh-hccCceEEEEcCcccccC
Q psy12466 476 YSRVSPVLII---SYEMLIRAYQTI-VDTEFDLLICDEGHRLKN 515 (680)
Q Consensus 476 ~~~~~~vvI~---ty~~l~~~~~~l-~~~~~~~vIlDEaH~~kn 515 (680)
..++++. +.+.+......+ ....+++||+|..+.+..
T Consensus 784 ---~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 784 ---IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp ---TTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred ---ccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcc
Confidence 0112222 233333333332 235789999999887753
No 292
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=46.41 E-value=32 Score=34.21 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=20.3
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
....|.+|.-..|.|||..+=+++..
T Consensus 42 ~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 42 VTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567889999999999887766643
No 293
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=46.35 E-value=41 Score=36.78 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=19.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~ 420 (680)
..|.+|.-+.|+|||..+=+++..
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999988777654
No 294
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=45.42 E-value=73 Score=34.54 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=36.7
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhc-CCCCCCccceEEEEeccchHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQ-GPYGMPVIRKVLIVTPSSLTSNWNDEF 451 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~-~~~~~~~~~~~LIV~P~sll~qW~~E~ 451 (680)
..+.-.+|+-.+|+|||..++.++...... + .++|++.-..-..+....+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-------~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-------KKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-------CCEEEEESSSCHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcC-------CcEEEEeccCCHHHHHHHH
Confidence 345568899999999999999999887654 3 2488888765555555544
No 295
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=45.39 E-value=41 Score=33.41 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhhhccCCCCceE--EEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEE
Q psy12466 379 RQGVSFLYERVCDLASLDLEGAI--LADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV 438 (680)
Q Consensus 379 ~~gv~~l~~~~~~~~~~~~~g~i--LaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV 438 (680)
.++++-+..++...........| ..-..|.|||..++.++..+...+. ++|+|
T Consensus 63 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~-------rVLLI 117 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGY-------KTLIV 117 (271)
T ss_dssp HHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTC-------CEEEE
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCC-------eEEEE
Confidence 46666665544322112222233 3356799999999999999987653 47776
No 296
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=45.07 E-value=47 Score=36.43 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=26.6
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
..+++--.|.|||.++..++..+...+. ++++|..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~-------kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGW-------KTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC-------eEEEEec
Confidence 3455667899999999999988887643 4677766
No 297
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=44.67 E-value=29 Score=34.29 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=20.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
..|.+|.-+.|+|||..+-+++..+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 4568999999999998887776543
No 298
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=44.21 E-value=45 Score=33.32 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=20.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
..+.+|.-.+|+|||..+.+++..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4467888999999999999988753
No 299
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=44.07 E-value=39 Score=34.12 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=24.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT 439 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~ 439 (680)
|.+-..|.|||.+++.++..+...+. ++|+|-
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~G~-------rVLLID 140 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQSDQ-------KVLFID 140 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHhCCC-------cEEEEE
Confidence 33456799999999999999887653 477774
No 300
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=42.97 E-value=3.7 Score=38.62 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=30.1
Q ss_pred CCcEEEEcCCCCCCCCCCCCCccccCC-CCCCceeccCCCCCCCCCCchhhh
Q psy12466 261 EFDLLICDEKSLLKPPSGNSPGNDSGI-PSLPRKSDSGIGSLPCKRPLEEST 311 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN~~s~~~~a~~~l-~~~~r~~LTG~~~~~~~~~~~e~~ 311 (680)
.+++||+||+|++.. .....+..+ .....+++||+.+--..+|++...
T Consensus 76 ~~dvviIDE~Q~~~~---~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~ 124 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP---SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTA 124 (184)
T ss_dssp TEEEEEECCGGGSCT---THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHH
T ss_pred CCCEEEEECcccCCH---HHHHHHHHHHHCCCCEEEEeeccccccCCccchH
Confidence 589999999999832 122333322 235689999987554445544443
No 301
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=42.74 E-value=9.9 Score=31.70 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=26.0
Q ss_pred EEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCC
Q psy12466 242 VLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274 (680)
Q Consensus 242 V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lK 274 (680)
|+|++|..+ .........+.+|++||.-++.
T Consensus 61 vII~aY~~~--~~~e~~~~~P~vV~vd~~N~i~ 91 (96)
T 1vc3_B 61 VILVAYGVF--DEEEARNLKPTVVLVDERNRIL 91 (96)
T ss_dssp EEEEEEEEE--CHHHHTTCCCEEEEECTTCCEE
T ss_pred EEEEECccC--CHHHHhcCCCEEEEECCCCCEE
Confidence 889999998 4556678899999999987765
No 302
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=42.72 E-value=1.1e+02 Score=30.34 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=28.7
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEecc
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~ 441 (680)
..+.-.+|+-..|.|||..+..++..+..... .+++++.-.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G------~~v~~~~~e 73 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG------KKVGLAMLE 73 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC------CCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC------CeEEEEeCc
Confidence 34555778899999999998888877765421 136776554
No 303
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=42.37 E-value=17 Score=37.24 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=21.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe
Q psy12466 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT 439 (680)
Q Consensus 406 mGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~ 439 (680)
=|.|||.+++-++..+...+. ++|+|=
T Consensus 57 GGVGKTTtavNLA~aLA~~Gk-------kVllID 83 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSILGK-------RVLQIG 83 (314)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CccCHHHHHHHHHHHHHHCCC-------eEEEEe
Confidence 378999999999999998874 466663
No 304
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=42.11 E-value=1.1e+02 Score=30.71 Aligned_cols=26 Identities=23% Similarity=0.087 Sum_probs=21.1
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
.+.-.+|+-+.|+|||..++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34457889999999999999888753
No 305
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=40.57 E-value=34 Score=33.94 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.+|.-++|+|||..+-+++..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999988887665
No 306
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=40.41 E-value=30 Score=42.41 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=46.2
Q ss_pred cccCcccHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchH-HHHHHH
Q psy12466 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT-SNWNDE 450 (680)
Q Consensus 372 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll-~qW~~E 450 (680)
.+|-+-|.++|.. .++..++....|+|||.+.+.-+..+...+.. .....++|+|+++... ..-.+.
T Consensus 9 ~~~t~eQ~~~i~~-----------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-~~~~~~il~~Tft~~aa~e~~~r 76 (1232)
T 3u4q_A 9 STWTDDQWNAIVS-----------TGQDILVAAAAGSGKTAVLVERMIRKITAEEN-PIDVDRLLVVTFTNASAAEMKHR 76 (1232)
T ss_dssp -CCCHHHHHHHHC-----------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-CCCGGGEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC-----------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-CCCccceEEEeccHHHHHHHHHH
Confidence 4578899999832 35678899999999999988876666655321 1124679999997333 333333
Q ss_pred HH
Q psy12466 451 FK 452 (680)
Q Consensus 451 ~~ 452 (680)
+.
T Consensus 77 i~ 78 (1232)
T 3u4q_A 77 IA 78 (1232)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 307
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=40.08 E-value=26 Score=33.46 Aligned_cols=33 Identities=36% Similarity=0.367 Sum_probs=25.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
+.+-.-|.|||..++.++..+...+. ++|+|=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~-------~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGR-------KVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTC-------CEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCC-------eEEEEeC
Confidence 44567799999999999999887653 4777754
No 308
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=39.48 E-value=26 Score=40.89 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=20.0
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIW 419 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~ 419 (680)
..+.+.+|.-+.|+|||..+-+++.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4566788999999999988776654
No 309
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=39.18 E-value=20 Score=35.16 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.1
Q ss_pred EcCCCCChHHHHHHHHHHHHhcC
Q psy12466 403 ADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 403 aDemGlGKT~~aiali~~~~~~~ 425 (680)
+---|.|||..++.++..+...+
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~G 29 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAMG 29 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTTT
T ss_pred ecCCCCcHHHHHHHHHHHHHHCC
Confidence 34568999999999999988765
No 310
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=39.13 E-value=23 Score=34.41 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=23.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
.|-+-+.|.|||..+++++..+..++.
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 456678999999999999999998874
No 311
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=38.30 E-value=31 Score=33.53 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=26.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT 439 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~ 439 (680)
++.+-.-|.|||..++.++..+...+. ++|+|=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g~-------~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQLGH-------DVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCCC-------cEEEEE
Confidence 355667899999999999999987653 477775
No 312
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=38.01 E-value=14 Score=35.43 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=22.8
Q ss_pred EcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEE
Q psy12466 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV 438 (680)
Q Consensus 403 aDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV 438 (680)
+---|.|||..++.++..+...+. ++|+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g~-------~Vlli 34 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDYD-------KIYAV 34 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTCS-------CEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCCC-------eEEEE
Confidence 446689999999999999887653 46666
No 313
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=37.90 E-value=29 Score=33.62 Aligned_cols=64 Identities=9% Similarity=0.245 Sum_probs=36.3
Q ss_pred eHHHHHHHHHhhhccCceEEEEcCcccccCcccHHHHHHHhcccceEEEEeCCCCCCCHHHHHHHHhhhC
Q psy12466 486 SYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFAN 555 (680)
Q Consensus 486 ty~~l~~~~~~l~~~~~~~vIlDEaH~~kn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~fl~ 555 (680)
+.+.+.+.+..+....+|+||+|=.-.+ .. ....+ +...-.+++-.+|-..++..+..++.++.
T Consensus 98 ~~~~~~~~l~~l~~~~yD~viiD~p~~~---~~-~~~~~--l~~ad~vi~v~~~~~~s~~~~~~~~~~l~ 161 (260)
T 3q9l_A 98 TREGVAKVLDDLKAMDFEFIVCDSPAGI---ET-GALMA--LYFADEAIITTNPEVSSVRDSDRILGILA 161 (260)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSSS---SH-HHHHH--HHTCSEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCCC---CH-HHHHH--HHhCCEEEEEecCChhHHHHHHHHHHHHH
Confidence 3445566666665547999999976533 11 22222 22333455555665566666666666664
No 314
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=37.74 E-value=23 Score=35.46 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=22.4
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEE
Q psy12466 404 DEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV 438 (680)
Q Consensus 404 DemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV 438 (680)
---|.|||..++.++..+...+. ++|+|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G~-------rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLNL-------KVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTC-------CEEEE
T ss_pred CCCCchHHHHHHHHHHHHHhCCC-------eEEEE
Confidence 47899999999999998887653 46764
No 315
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=37.63 E-value=98 Score=39.14 Aligned_cols=45 Identities=13% Similarity=0.035 Sum_probs=33.7
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccchHHH
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSN 446 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~sll~q 446 (680)
..+...+|+-++|+|||..++.++......+. +++++.-.....+
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~-------~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-------TCAFIDAEHALDP 774 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEECTTSCCCH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCC-------CeEEEeccchHHH
Confidence 34556889999999999999999988776542 4788776544443
No 316
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=37.40 E-value=24 Score=34.74 Aligned_cols=27 Identities=26% Similarity=0.038 Sum_probs=23.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
.|-+-+.|.|||..+++++..+...+.
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 456789999999999999999998764
No 317
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=37.24 E-value=23 Score=35.65 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=23.3
Q ss_pred EcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEE
Q psy12466 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV 438 (680)
Q Consensus 403 aDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV 438 (680)
+---|.|||..++.++..+...+. ++|+|
T Consensus 47 ~~KGGvGKTT~a~nLA~~La~~G~-------~Vlli 75 (307)
T 3end_A 47 YGKGGIGKSTTSSNLSAAFSILGK-------RVLQI 75 (307)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTC-------CEEEE
T ss_pred ECCCCccHHHHHHHHHHHHHHCCC-------eEEEE
Confidence 357889999999999999988753 46666
No 318
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=36.71 E-value=24 Score=35.16 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=19.4
Q ss_pred EcCCCCChHHHHHHHHHHHHhcC
Q psy12466 403 ADEMGLGKTLQCIALIWTLLRQG 425 (680)
Q Consensus 403 aDemGlGKT~~aiali~~~~~~~ 425 (680)
+---|.|||..++.++..+...+
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G 30 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMG 30 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTT
T ss_pred eCCCcCcHHHHHHHHHHHHHHCC
Confidence 34668999999999999998765
No 319
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=35.89 E-value=31 Score=33.78 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=25.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT 439 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~ 439 (680)
++.+-.-|.|||..++.++..+...+. ++|+|=
T Consensus 22 ~v~s~kGGvGKTT~a~nLA~~la~~G~-------~VlliD 54 (262)
T 2ph1_A 22 AVMSGKGGVGKSTVTALLAVHYARQGK-------KVGILD 54 (262)
T ss_dssp EEECSSSCTTHHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHCCC-------eEEEEe
Confidence 345567799999999999999987653 477765
No 320
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=35.50 E-value=27 Score=33.64 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=20.5
Q ss_pred CceEEEcCCCCChHHHHHHHHHHH
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~ 421 (680)
.+.++.-.+|+|||..+.+++..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357778999999999999988775
No 321
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=35.38 E-value=1.8e+02 Score=27.31 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=18.7
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~ 420 (680)
.+.-..|.-+.|.|||..+-.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445677889999999988777643
No 322
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=34.50 E-value=24 Score=34.64 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=22.8
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEE
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV 438 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV 438 (680)
+.+---|.|||..++.++..+. .+. ++|+|
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~g~-------~Vlli 61 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-KNN-------KVLLI 61 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-TTS-------CEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHH-CCC-------CEEEE
Confidence 3446778999999999998888 542 46666
No 323
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=34.24 E-value=38 Score=34.02 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=25.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT 439 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~ 439 (680)
++.+-..|.|||..++.++..+...+. ++|+|=
T Consensus 96 ~vts~kgG~GKTtva~nLA~~lA~~G~-------rVLLID 128 (286)
T 3la6_A 96 MMTGVSPSIGMTFVCANLAAVISQTNK-------RVLLID 128 (286)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTTC-------CEEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhCCC-------CEEEEe
Confidence 445567899999999999999887653 477773
No 324
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=34.17 E-value=28 Score=34.37 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCC
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGP 426 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~ 426 (680)
.|-+-+.|.|||..+++++..+...+.
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 455689999999999999999998874
No 325
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=34.15 E-value=37 Score=34.61 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=26.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P 440 (680)
.+..---|.|||.++++++..+...+. ++|+|-.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G~-------rVLlvD~ 50 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSGK-------KTLVIST 50 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTC-------CEEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCC-------cEEEEeC
Confidence 456678899999999999999988753 4776654
No 326
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=33.53 E-value=13 Score=31.27 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=25.0
Q ss_pred EEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCC
Q psy12466 242 VLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274 (680)
Q Consensus 242 V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lK 274 (680)
|+|++|..+ ....+....+.+|.+||.-+++
T Consensus 60 vII~aY~~~--~~~e~~~~~P~vv~vd~~N~i~ 90 (102)
T 3plx_B 60 VIIMSYADF--NEEEAKTFKPKVVFVDENNTAT 90 (102)
T ss_dssp EEEEEEEEE--EHHHHHHCCCEEEEECTTSCEE
T ss_pred EEEEEcccC--CHHHHhcCCCEEEEECCCCcEE
Confidence 889999988 3456667889999999976664
No 327
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=33.41 E-value=20 Score=31.80 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=25.2
Q ss_pred EEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCCC
Q psy12466 242 VLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKP 275 (680)
Q Consensus 242 V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lKN 275 (680)
|+|++|..+ ....+....+.+|++||.-++..
T Consensus 85 vII~aYa~~--~~~E~~~~~P~vV~vd~~N~i~~ 116 (139)
T 2c45_A 85 VILIAYATM--DDARARTYQPRIVFVDAYNKPID 116 (139)
T ss_dssp EEEEECCEE--EHHHHHSCCCEEEECCTTCC---
T ss_pred EEEEECCcC--CHHHhccCCCeEEEECCCCCEEE
Confidence 889999998 45666788999999999988875
No 328
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=33.40 E-value=38 Score=32.41 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=20.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
++..---|.|||..++.++..+...
T Consensus 8 ~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 8 GFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred EEECCCCCcchHHHHHHHHHHHHhC
Confidence 3455667999999999999998876
No 329
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=33.17 E-value=4e+02 Score=27.90 Aligned_cols=47 Identities=21% Similarity=0.053 Sum_probs=28.2
Q ss_pred CCCCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEeccc
Q psy12466 395 LDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSS 442 (680)
Q Consensus 395 ~~~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P~s 442 (680)
..+.-..|+-+.|.|||..+..++.........+. ...+++++.-..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg-~~~~viyid~E~ 222 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG-GEGKCLYIDTEG 222 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC-CSSEEEEEESSS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC-CCCcEEEEeCCC
Confidence 34455778899999999988876644332110000 124577777654
No 330
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=32.76 E-value=1.6e+02 Score=27.56 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=30.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe--ccchHHHHHHH
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT--PSSLTSNWNDE 450 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~--P~sll~qW~~E 450 (680)
+..---|.|||..++.++..+...+ ++|+|= |..-+..|...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g--------~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG--------ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS--------CEEEEEECTTCHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC--------CEEEEECCCCCCHHHHhcC
Confidence 4455679999999999998888654 267653 55566677653
No 331
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=32.54 E-value=41 Score=34.76 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=26.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe
Q psy12466 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT 439 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~ 439 (680)
.+..---|.|||.++++++..+...+. ++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~-------rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGL-------KVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSC-------CEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCC-------eEEEEe
Confidence 556678899999999999999988753 466665
No 332
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=31.34 E-value=37 Score=35.25 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.+|.-++|+|||..|-+++..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999988877654
No 333
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=30.38 E-value=39 Score=34.24 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.0
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
+++.+|.-++|+|||..+-+++..+
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999999888777654
No 334
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=30.20 E-value=26 Score=36.51 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=22.0
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEE
Q psy12466 404 DEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV 438 (680)
Q Consensus 404 DemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV 438 (680)
---|.|||.+++.++..+...+. ++|+|
T Consensus 9 ~KGGvGKTT~a~nLA~~LA~~G~-------rVLlI 36 (361)
T 3pg5_A 9 NKGGVGKTTLSTNVAHYFALQGK-------RVLYV 36 (361)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTC-------CEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCCC-------cEEEE
Confidence 34588999999999999887653 47776
No 335
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=29.71 E-value=20 Score=31.92 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=27.0
Q ss_pred EEEEehhHHHHHHHhhhcCCCcEEEEcCCCCCCC
Q psy12466 242 VLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKP 275 (680)
Q Consensus 242 V~itsYe~l~~~~~~l~~~~~~~vI~DEaH~lKN 275 (680)
|+|++|..+ ....+....+.+|++||.-+++.
T Consensus 102 VII~sYa~~--~~~E~~~~~P~VV~vd~~N~i~~ 133 (143)
T 1pqh_A 102 VIIASFVTM--PDEEARTWRPNVAYFEGDNEMKR 133 (143)
T ss_dssp EEEEEEEEE--EHHHHTTCCCEEEEEETTTEECC
T ss_pred EEEEECccC--CHHHhccCCCeEEEECCCCCEEE
Confidence 889999998 45566788999999999888764
No 336
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=29.33 E-value=9.3 Score=41.30 Aligned_cols=82 Identities=15% Similarity=0.038 Sum_probs=45.9
Q ss_pred CeEEEEECccc-HHHHHHHHHHHhCCCCeeEEeecCCcchhhhcccCCCCEEEEehhHHHHHHHhhhcCCCcEEEEcCCC
Q psy12466 193 LRVLIVTPSSL-TSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEKS 271 (680)
Q Consensus 193 ~~~LIV~P~sl-~~nW~~E~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~itsYe~l~~~~~~l~~~~~~~vI~DEaH 271 (680)
++.||++|..- ...|++.+.+- + .. ...++-+.|++.+...........+++||+||+.
T Consensus 185 ~~~lVlTpT~~aa~~l~~kl~~~-~-----------~~--------~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~s 244 (446)
T 3vkw_A 185 EEDLILVPGRQAAEMIRRRANAS-G-----------II--------VATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGL 244 (446)
T ss_dssp TTCEEEESCHHHHHHHHHHHTTT-S-----------CC--------CCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGG
T ss_pred CCeEEEeCCHHHHHHHHHHhhhc-C-----------cc--------ccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcc
Confidence 45699999655 56777766321 0 00 0112236777766433222222348999999998
Q ss_pred CCCCCCCCCCccccCCCCCCceeccC
Q psy12466 272 LLKPPSGNSPGNDSGIPSLPRKSDSG 297 (680)
Q Consensus 272 ~lKN~~s~~~~a~~~l~~~~r~~LTG 297 (680)
.+-. ......+..+.+ .+++|.|
T Consensus 245 m~~~--~~l~~l~~~~~~-~~vilvG 267 (446)
T 3vkw_A 245 MLHT--GCVNFLVEMSLC-DIAYVYG 267 (446)
T ss_dssp GSCH--HHHHHHHHHTTC-SEEEEEE
T ss_pred cCCH--HHHHHHHHhCCC-CEEEEec
Confidence 7632 222222333333 7999988
No 337
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=28.75 E-value=60 Score=33.43 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...+.+|.-++|+|||..|-+++..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999988877655
No 338
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=28.65 E-value=51 Score=33.71 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=26.8
Q ss_pred ceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe
Q psy12466 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT 439 (680)
Q Consensus 399 g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~ 439 (680)
=.+..---|.|||..+.+++..+...+. ++|+|-
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~G~-------rVllvD 54 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRS-------SVLLIS 54 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTSSS-------CEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCC-------eEEEEE
Confidence 3566778899999999999999987753 477663
No 339
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=27.77 E-value=33 Score=33.42 Aligned_cols=30 Identities=40% Similarity=0.532 Sum_probs=23.6
Q ss_pred EcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe
Q psy12466 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT 439 (680)
Q Consensus 403 aDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~ 439 (680)
+---|.|||..++.++..+...+. ++|+|=
T Consensus 13 s~kGGvGKTt~a~~LA~~la~~g~-------~VlliD 42 (257)
T 1wcv_1 13 NQKGGVGKTTTAINLAAYLARLGK-------RVLLVD 42 (257)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred eCCCCchHHHHHHHHHHHHHHCCC-------CEEEEE
Confidence 356789999999999999887653 477763
No 340
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=27.39 E-value=14 Score=35.75 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=34.3
Q ss_pred CCcEEEEcCCCCCCCCCCCCCccccCC-CCCCceeccCCCCCCCCCCchhhhHH
Q psy12466 261 EFDLLICDEKSLLKPPSGNSPGNDSGI-PSLPRKSDSGIGSLPCKRPLEESTAE 313 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN~~s~~~~a~~~l-~~~~r~~LTG~~~~~~~~~~~e~~~~ 313 (680)
.+|+||+||||.+... .. ..+..+ .....+++||+-.--..+|+..+..-
T Consensus 101 ~~dvViIDEaQF~~~~--~V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~L 151 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGD--IV-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQL 151 (214)
T ss_dssp SCCEEEECCGGGSCTT--HH-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHH
T ss_pred CCCEEEEECcccCCHH--HH-HHHHHHhhCCCEEEEEecccccccCccccHHHH
Confidence 5899999999998532 22 344442 23568999999876666676665543
No 341
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=27.36 E-value=63 Score=34.84 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=30.4
Q ss_pred cHHHHHHHHHhhhhhccCCCCceEEEcCCCCChHHHHHHHHHHHHh
Q psy12466 378 QRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 378 Q~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~~aiali~~~~~ 423 (680)
|...+..+.+.+. .....+.+|.-++|+|||..+-+++..+..
T Consensus 185 r~~~i~~l~~~l~---r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 185 RSKEIQRVIEVLS---RRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CHHHHHHHHHHHH---CSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHh---ccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4445555554432 234567899999999999999888877754
No 342
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=27.32 E-value=44 Score=33.24 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=27.7
Q ss_pred EcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe--c-cchHHHHHH
Q psy12466 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT--P-SSLTSNWND 449 (680)
Q Consensus 403 aDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~--P-~sll~qW~~ 449 (680)
+---|.|||..++.++..+...+. ++|+|= | ..-+..|..
T Consensus 11 s~KGGvGKTT~a~nLA~~La~~G~-------~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 11 NEKGGAGKSTIAVHLVTALLYGGA-------KVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTTC-------CEEEEECCTTTCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCC-------cEEEEECCCCCCCHHHHhC
Confidence 456789999999999999987653 466653 3 334455543
No 343
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=27.29 E-value=68 Score=35.60 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=27.5
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEe
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVT 439 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~ 439 (680)
.+-.++.---|.|||.++++++..+...+. ++|+|-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~-------rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGK-------RVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCC-------cEEEEE
Confidence 344566677899999999999999988763 466654
No 344
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=27.07 E-value=18 Score=35.14 Aligned_cols=66 Identities=12% Similarity=-0.024 Sum_probs=37.5
Q ss_pred EEEEehhHHHHHHH-hhhcCCCcEEEEcCCCCCCCCCCCCCccccCCC-CCCceeccCCCCCCCCCCchhh
Q psy12466 242 VLIISYEMLIRAYQ-TIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIP-SLPRKSDSGIGSLPCKRPLEES 310 (680)
Q Consensus 242 V~itsYe~l~~~~~-~l~~~~~~~vI~DEaH~lKN~~s~~~~a~~~l~-~~~r~~LTG~~~~~~~~~~~e~ 310 (680)
+.+.+.+.+..... .+....+++||+||+|.+... ....+..+. ....++++|...--..+|....
T Consensus 69 ~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~ 136 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGLDKNFKGEPFGPI 136 (223)
T ss_dssp EEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTH
T ss_pred cccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEeccccccCCcCCCc
Confidence 33444443333222 233356999999999997532 211222221 2468999998765555566555
No 345
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=26.93 E-value=20 Score=34.16 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.3
Q ss_pred cCCCcEEEEcCCCCCCC
Q psy12466 259 DTEFDLLICDEKSLLKP 275 (680)
Q Consensus 259 ~~~~~~vI~DEaH~lKN 275 (680)
...-.+||+||||.+-+
T Consensus 85 ~~~~~vliIDEAq~l~~ 101 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWP 101 (199)
T ss_dssp GGTTCEEEETTGGGTSB
T ss_pred ccCceEEEEEChhhhcc
Confidence 34477999999999943
No 346
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=26.45 E-value=15 Score=36.04 Aligned_cols=49 Identities=6% Similarity=-0.016 Sum_probs=33.4
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCC-CCCceeccCCCCCCCCCCchhhhH
Q psy12466 260 TEFDLLICDEKSLLKPPSGNSPGNDSGIP-SLPRKSDSGIGSLPCKRPLEESTA 312 (680)
Q Consensus 260 ~~~~~vI~DEaH~lKN~~s~~~~a~~~l~-~~~r~~LTG~~~~~~~~~~~e~~~ 312 (680)
..+|+|++||||.+.. ....+..+. ....+++||+..--..+|++....
T Consensus 89 ~~~dvViIDEaQF~~~----v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~ 138 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD----IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILN 138 (234)
T ss_dssp TTCSEEEESSGGGCTT----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGG
T ss_pred ccCCEEEEEchhhhhh----HHHHHHHHHhCCCEEEEEecccccccCCcccHHH
Confidence 4589999999999953 333333332 345899999987666666665544
No 347
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=26.29 E-value=33 Score=33.53 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=21.6
Q ss_pred CCCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
...|.+|.-++|+|||..+-+++..+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 45678899999999999998887654
No 348
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=26.07 E-value=47 Score=32.17 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.6
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHH
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTL 421 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~ 421 (680)
..|.+|.-++|+|||..+-+++..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5678899999999999888777554
No 349
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=24.64 E-value=13 Score=35.09 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=31.7
Q ss_pred CCcEEEEcCCCCCCCCCCCCCccccCC-CCCCceeccCCCCCCCCCCchhhhH
Q psy12466 261 EFDLLICDEKSLLKPPSGNSPGNDSGI-PSLPRKSDSGIGSLPCKRPLEESTA 312 (680)
Q Consensus 261 ~~~~vI~DEaH~lKN~~s~~~~a~~~l-~~~~r~~LTG~~~~~~~~~~~e~~~ 312 (680)
.+|+||+||||.+... .-..+..+ .....++++|+-.--..+|+..+..
T Consensus 81 ~~dvViIDEaqfl~~~---~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~ 130 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDE---IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPE 130 (191)
T ss_dssp TCSEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHH
T ss_pred cCCEEEEECCCCCCHH---HHHHHHHHHhCCCEEEEEecccccccCcCccHHH
Confidence 5899999999997422 12233332 2345899999876656666654443
No 350
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=23.91 E-value=64 Score=33.18 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=29.7
Q ss_pred CceEEEcCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEEec--cchHHHH
Q psy12466 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTP--SSLTSNW 447 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV~P--~sll~qW 447 (680)
.-.+..---|.|||.++++++..+...+. ++|+|-- ..-+..|
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~-------~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRR-------SVLLLSTDPAHNLSDA 61 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSS-------CEEEEECCSSCHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCC-------cEEEEECCCCCChhHH
Confidence 33556677899999999999998887653 4666553 3444444
No 351
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=23.47 E-value=54 Score=34.37 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=18.6
Q ss_pred EEEcCCCCChHHHHHHHHHHHHh
Q psy12466 401 ILADEMGLGKTLQCIALIWTLLR 423 (680)
Q Consensus 401 iLaDemGlGKT~~aiali~~~~~ 423 (680)
+..---|.|||.+++.++..+..
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHH
T ss_pred EEeCCCCccHHHHHHHHHHHHHh
Confidence 33456789999999999988874
No 352
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=22.90 E-value=55 Score=32.89 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=19.0
Q ss_pred CceEEEcCCCCChHHHHHHHHHH
Q psy12466 398 EGAILADEMGLGKTLQCIALIWT 420 (680)
Q Consensus 398 ~g~iLaDemGlGKT~~aiali~~ 420 (680)
+..+|.-+.|+|||..+-.++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 67888999999999988777644
No 353
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=22.53 E-value=71 Score=33.09 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=26.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHHH--hcCCCCCCccceEEEEec
Q psy12466 400 AILADEMGLGKTLQCIALIWTLL--RQGPYGMPVIRKVLIVTP 440 (680)
Q Consensus 400 ~iLaDemGlGKT~~aiali~~~~--~~~~~~~~~~~~~LIV~P 440 (680)
.+..---|.|||.++++++..+. ..+. ++|+|-.
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~~G~-------rVLLvD~ 56 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQPNK-------QFLLIST 56 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-------CEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCCC-------eEEEEEC
Confidence 55566789999999999999988 6553 4777654
No 354
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=22.02 E-value=56 Score=30.59 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCChHHHHHHHHH
Q psy12466 396 DLEGAILADEMGLGKTLQCIALIW 419 (680)
Q Consensus 396 ~~~g~iLaDemGlGKT~~aiali~ 419 (680)
.+.|.++.-+.|.|||..+++++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 567889999999999999999886
No 355
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=21.56 E-value=6.4e+02 Score=25.79 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=20.9
Q ss_pred CCceEEEcCCCCChHHHHHHHHHHHHhc
Q psy12466 397 LEGAILADEMGLGKTLQCIALIWTLLRQ 424 (680)
Q Consensus 397 ~~g~iLaDemGlGKT~~aiali~~~~~~ 424 (680)
+.-.++.-..|.|||...-+++..+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 3446678999999998877777666543
No 356
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=20.82 E-value=42 Score=35.29 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=25.4
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCCCCccceEEEE-eccchHHHH
Q psy12466 404 DEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIV-TPSSLTSNW 447 (680)
Q Consensus 404 DemGlGKT~~aiali~~~~~~~~~~~~~~~~~LIV-~P~sll~qW 447 (680)
---|.|||.++++++..+...+. ++|+| +|..-+.+|
T Consensus 9 gkGG~GKTt~a~~la~~la~~g~-------~vllvd~~~~~l~~~ 46 (374)
T 3igf_A 9 GKSGVARTKIAIAAAKLLASQGK-------RVLLAGLAEPVLPLL 46 (374)
T ss_dssp CSBHHHHHHHHHHHHHHHHHTTC-------CEEEEECSCSHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHCCC-------CeEEEeCCCCChHHh
Confidence 34489999999999998888763 35554 444444444
Done!