Your job contains 1 sequence.
>psy12466
MAGKDLTNVLDILNEAYLDQEEQFDSTLSKENHNYVYPEPGGTEVSEAQNSNHATSVTRI
FNVVYGKPSAKKHKSWEQDGVLEISGTMAILKDTLGKVIDSKVKILDEIKPGTSSLQSSP
RLNASDNVQSSTVNAQTSSVNAQTSSVSASSSLPWRPVKKSRLSLHAKTEVNPLILPKPI
VDHQEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS
PVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGS
LPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKP
LVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT
LLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS
PVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPL
QNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRT
AGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVTHALR
KICNHPGLVQQPDMMEEEGQ
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12466
(680 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1P5M3 - symbol:RAD54B "DNA repair and recombin... 818 7.0e-95 3
UNIPROTKB|Q9DG67 - symbol:RAD54B "DNA repair and recombin... 818 7.0e-95 3
UNIPROTKB|Q9Y620 - symbol:RAD54B "DNA repair and recombin... 800 3.8e-94 3
UNIPROTKB|F1MSA4 - symbol:RAD54B "Uncharacterized protein... 800 1.5e-91 2
UNIPROTKB|F1PW14 - symbol:RAD54B "Uncharacterized protein... 787 1.7e-90 2
ZFIN|ZDB-GENE-060810-50 - symbol:rad54b "RAD54 homolog B ... 808 1.9e-89 2
UNIPROTKB|F1RY50 - symbol:RAD54B "Uncharacterized protein... 786 4.4e-88 2
ASPGD|ASPL0000055935 - symbol:AN0855 species:162425 "Emer... 702 1.6e-74 2
POMBASE|SPAC15A10.03c - symbol:rad54 "DNA-dependent ATPas... 680 6.5e-67 1
MGI|MGI:894697 - symbol:Rad54l "RAD54 like (S. cerevisiae... 678 1.1e-66 1
UNIPROTKB|Q92698 - symbol:RAD54L "DNA repair and recombin... 678 1.1e-66 1
UNIPROTKB|F1PJC9 - symbol:RAD54L "Uncharacterized protein... 677 1.3e-66 1
UNIPROTKB|O12944 - symbol:RAD54L "DNA repair and recombin... 675 2.2e-66 1
UNIPROTKB|F1NBD4 - symbol:RAD54L "DNA repair and recombin... 674 2.8e-66 1
UNIPROTKB|F1NX31 - symbol:RAD54L "DNA repair and recombin... 674 2.8e-66 1
UNIPROTKB|A1L4Z4 - symbol:RAD54L "Uncharacterized protein... 668 1.2e-65 1
UNIPROTKB|F1S3V8 - symbol:RAD54L "Uncharacterized protein... 666 2.0e-65 1
CGD|CAL0004359 - symbol:RDH54 species:5476 "Candida albic... 610 1.3e-63 2
ASPGD|ASPL0000027956 - symbol:AN10677 species:162425 "Eme... 626 3.3e-63 2
WB|WBGene00004298 - symbol:rad-54 species:6239 "Caenorhab... 644 4.2e-63 1
UNIPROTKB|B3MMA5 - symbol:okr "DNA repair and recombinati... 642 6.9e-63 1
ZFIN|ZDB-GENE-040426-968 - symbol:rad54l "RAD54-like (S. ... 640 1.1e-62 1
DICTYBASE|DDB_G0285117 - symbol:rad54b "CHR group protein... 640 4.1e-62 1
SGD|S000003131 - symbol:RAD54 "DNA-dependent ATPase that ... 580 4.6e-62 2
CGD|CAL0001568 - symbol:RAD54 species:5476 "Candida albic... 634 4.8e-62 1
UNIPROTKB|Q5AKX3 - symbol:RAD54 "Putative uncharacterized... 634 4.8e-62 1
UNIPROTKB|B4MX21 - symbol:okr "DNA repair and recombinati... 605 2.6e-61 2
UNIPROTKB|B3NAN8 - symbol:okr "DNA repair and recombinati... 624 5.5e-61 1
UNIPROTKB|B4NXB8 - symbol:okr "DNA repair and recombinati... 621 1.2e-60 1
POMBASE|SPAC22F3.03c - symbol:rdh54 "ATP-dependent DNA he... 545 1.2e-60 2
UNIPROTKB|B4KHL5 - symbol:okr "DNA repair and recombinati... 617 3.1e-60 1
FB|FBgn0002989 - symbol:okr "okra" species:7227 "Drosophi... 616 3.9e-60 1
UNIPROTKB|Q29KH2 - symbol:okr "DNA repair and recombinati... 611 1.3e-59 1
TAIR|locus:2094083 - symbol:RAD54 "homolog of RAD54" spec... 597 3.3e-59 2
UNIPROTKB|B4M9A8 - symbol:okr "DNA repair and recombinati... 605 5.7e-59 1
UNIPROTKB|B4GS98 - symbol:okr "DNA repair and recombinati... 604 7.3e-59 1
UNIPROTKB|B4JCS7 - symbol:okr "DNA repair and recombinati... 598 3.2e-58 1
DICTYBASE|DDB_G0282997 - symbol:rad54 "CHR group protein"... 590 8.7e-57 1
GENEDB_PFALCIPARUM|PF08_0126 - symbol:PF08_0126 "DNA repa... 553 2.7e-52 1
UNIPROTKB|Q8IAN4 - symbol:PF08_0126 "DNA repair protein r... 553 2.7e-52 1
WB|WBGene00013792 - symbol:Y116A8C.13 species:6239 "Caeno... 417 1.1e-46 3
SGD|S000000277 - symbol:RDH54 "DNA-dependent ATPase" spec... 409 1.3e-44 2
UNIPROTKB|F1NCD0 - symbol:ERCC6L "Uncharacterized protein... 365 7.0e-33 2
TAIR|locus:2024198 - symbol:SWI2 "switch 2" species:3702 ... 380 6.1e-32 1
ZFIN|ZDB-GENE-060531-56 - symbol:ercc6l "excision repair ... 371 6.1e-31 2
UNIPROTKB|I3LFY4 - symbol:ERCC6L "Uncharacterized protein... 356 1.6e-30 2
UNIPROTKB|J9P3F5 - symbol:ERCC6L "Uncharacterized protein... 357 1.8e-30 2
UNIPROTKB|Q5T890 - symbol:RAD26L "Putative DNA repair and... 318 3.8e-30 3
RGD|1565734 - symbol:Ercc6l "excision repair cross-comple... 353 5.7e-30 2
UNIPROTKB|A6QQR4 - symbol:ERCC6L "DNA excision repair pro... 350 7.9e-30 2
UNIPROTKB|Q2NKX8 - symbol:ERCC6L "DNA excision repair pro... 348 1.4e-29 2
MGI|MGI:2654144 - symbol:Ercc6l "excision repair cross-co... 351 2.0e-29 2
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 358 4.3e-29 1
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 358 4.3e-29 1
UNIPROTKB|F1S4L1 - symbol:ERCC6L2 "Uncharacterized protei... 363 4.8e-29 2
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 355 7.9e-29 1
FB|FBgn0020306 - symbol:dom "domino" species:7227 "Drosop... 364 2.6e-28 2
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 351 2.7e-28 1
DICTYBASE|DDB_G0281441 - symbol:ercc6 "DNA excision repai... 353 4.0e-28 2
TAIR|locus:2160811 - symbol:CHR24 "chromatin remodeling 2... 347 4.5e-28 1
UNIPROTKB|F1PB65 - symbol:RAD54L2 "Uncharacterized protei... 248 5.6e-28 2
UNIPROTKB|H0Y760 - symbol:RAD54L2 "Helicase ARIP4" specie... 248 6.6e-28 2
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 347 7.2e-28 1
UNIPROTKB|D3ZZZ1 - symbol:Ercc6 "Protein Ercc6" species:1... 347 7.2e-28 1
UNIPROTKB|F1SDX0 - symbol:ERCC6 "Uncharacterized protein"... 347 7.3e-28 1
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 346 8.5e-28 1
UNIPROTKB|B4E0W6 - symbol:BTAF1 "TATA-binding protein-ass... 327 8.7e-28 2
DICTYBASE|DDB_G0285205 - symbol:snf2a "SNF2-related prote... 360 8.7e-28 2
UNIPROTKB|Q9Y4B4 - symbol:RAD54L2 "Helicase ARIP4" specie... 248 9.1e-28 2
CGD|CAL0000831 - symbol:orf19.1734 species:5476 "Candida ... 345 1.1e-27 1
WB|WBGene00007761 - symbol:rad-26 species:6239 "Caenorhab... 258 1.3e-27 3
UNIPROTKB|E1BYA8 - symbol:ERCC6 "Uncharacterized protein"... 347 1.4e-27 2
RGD|1310600 - symbol:Rad54l "RAD54 like (S. cerevisiae)" ... 248 2.6e-27 3
RGD|1561889 - symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae... 248 2.6e-27 3
UNIPROTKB|Q03468 - symbol:ERCC6 "DNA excision repair prot... 349 2.8e-27 2
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 341 2.8e-27 1
FB|FBgn0039338 - symbol:XNP "XNP" species:7227 "Drosophil... 258 3.0e-27 3
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 339 3.2e-27 1
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 339 3.2e-27 1
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 339 3.2e-27 1
POMBASE|SPCP25A2.02c - symbol:rhp26 "SNF2 family helicase... 262 3.5e-27 2
SGD|S000006003 - symbol:MOT1 "Essential protein involved ... 342 5.8e-27 2
ZFIN|ZDB-GENE-030131-3097 - symbol:rad54l2 "RAD54-like 2 ... 250 7.4e-27 2
ZFIN|ZDB-GENE-021025-1 - symbol:btaf1 "BTAF1 RNA polymera... 332 8.5e-27 2
ASPGD|ASPL0000041040 - symbol:AN9077 species:162425 "Emer... 337 1.1e-26 1
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 351 1.2e-26 2
MGI|MGI:1933196 - symbol:Rad54l2 "RAD54 like 2 (S. cerevi... 247 1.4e-26 3
UNIPROTKB|G3N326 - symbol:LOC788113 "Uncharacterized prot... 331 1.9e-26 1
MGI|MGI:2444036 - symbol:Srcap "Snf2-related CREBBP activ... 331 1.9e-26 1
WB|WBGene00006961 - symbol:xnp-1 species:6239 "Caenorhabd... 201 2.1e-26 3
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 349 2.2e-26 2
UNIPROTKB|F1NHJ5 - symbol:BTAF1 "Uncharacterized protein"... 334 2.6e-26 1
UNIPROTKB|O14981 - symbol:BTAF1 "TATA-binding protein-ass... 327 3.0e-26 2
UNIPROTKB|F1SCA0 - symbol:BTAF1 "Uncharacterized protein"... 327 3.0e-26 2
UNIPROTKB|E2QWL4 - symbol:BTAF1 "Uncharacterized protein"... 327 3.1e-26 2
UNIPROTKB|F1N507 - symbol:Bt.112326 "Uncharacterized prot... 326 3.9e-26 2
CGD|CAL0005444 - symbol:SNF2 species:5476 "Candida albica... 337 4.2e-26 2
UNIPROTKB|Q5AM49 - symbol:SNF2 "Putative uncharacterized ... 337 4.2e-26 2
UNIPROTKB|J9PA15 - symbol:SRCAP "Uncharacterized protein"... 331 4.4e-26 1
UNIPROTKB|Q47YP1 - symbol:CPS_3404 "Snf2 family protein" ... 329 4.5e-26 1
WARNING: Descriptions of 409 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 818 (293.0 bits), Expect = 7.0e-95, Sum P(3) = 7.0e-95
Identities = 164/326 (50%), Positives = 220/326 (67%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
Q N +G P+VDV VD +++ L+PHQR+G+ FLYE V + GAILADEMGLGK
Sbjct: 280 QCMFNKAGLPVVDVVVDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGK 339
Query: 411 TLQCIALIWTLLRQGPYGM-PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+L+WTLLRQG YG PV+++ LIVTP SL NW EF+KWLG R+ + V+Q +
Sbjct: 340 TLQCISLVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDH 399
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E+++ S + V+IISYEML+R+ I EF+LLICDEGHRLKN K +T L+
Sbjct: 400 KVEEFISSPLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSC 459
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
+RI+L+GTP+QNDLQEF+ L +F NPGVLGSL +RK +EEPI+ SR P++T+ +K LG
Sbjct: 460 ERRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLG 519
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEY------W 643
E R+++L + T FILRRT +V L K+E ++ C+ T LQ LY + +
Sbjct: 520 EKRAAELTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLELYQKLLSSRVISSCL 579
Query: 644 DARASRDSHLSVTHALRKICNHPGLV 669
R HL AL+K+CNHP L+
Sbjct: 580 QGRLENSPHLICIGALKKLCNHPCLL 605
Score = 210 (79.0 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 60/159 (37%), Positives = 88/159 (55%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA 253
R LIVTP SL NW EF+KWLG R+ + V+Q +K E+++ S + V+IISYEML+R+
Sbjct: 364 RALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDHKVEEFISSPLYSVMIISYEMLLRS 423
Query: 254 YQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTA- 312
I EF+LLICDE LK +S + + +L + + P + L+E A
Sbjct: 424 LDQIQAIEFNLLICDEGHRLK---NSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYAL 480
Query: 313 -ETLQCNQINSHLSVTHALRKICNHPGL-VQQPDVMEEE 349
E + + S LS T+ RKI P + ++P +EE
Sbjct: 481 IEFVNPGVLGS-LS-TY--RKIYEEPIVRSREPSATKEE 515
Score = 112 (44.5 bits), Expect = 7.0e-95, Sum P(3) = 7.0e-95
Identities = 29/77 (37%), Positives = 37/77 (48%)
Query: 40 PGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILKDTLGKVI 99
P EA +T+ F+V++ K S KKHK WE D +L G ILKD GK I
Sbjct: 110 PTSGMAKEAAAQEEPDCLTKYFSVMWCKASKKKHKKWEGDAILITKGKSVILKDMEGKDI 169
Query: 100 DS----KVKILDEIKPG 112
K K LD ++ G
Sbjct: 170 GRGSGYKSKELDSLEEG 186
Score = 57 (25.1 bits), Expect = 0.00060, Sum P(3) = 0.00060
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 315 LQCNQINS-HLSVTHALRKICNHPGLV 340
LQ NS HL AL+K+CNHP L+
Sbjct: 579 LQGRLENSPHLICIGALKKLCNHPCLL 605
Score = 47 (21.6 bits), Expect = 7.0e-95, Sum P(3) = 7.0e-95
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 166 HAKTEVNPLILPKPIVDHQ 184
H + N L++P+P HQ
Sbjct: 262 HNPNDTNSLVMPRPNASHQ 280
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 818 (293.0 bits), Expect = 7.0e-95, Sum P(3) = 7.0e-95
Identities = 164/326 (50%), Positives = 220/326 (67%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
Q N +G P+VDV VD +++ L+PHQR+G+ FLYE V + GAILADEMGLGK
Sbjct: 280 QCMFNKAGLPVVDVVVDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGK 339
Query: 411 TLQCIALIWTLLRQGPYGM-PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+L+WTLLRQG YG PV+++ LIVTP SL NW EF+KWLG R+ + V+Q +
Sbjct: 340 TLQCISLVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDH 399
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E+++ S + V+IISYEML+R+ I EF+LLICDEGHRLKN K +T L+
Sbjct: 400 KVEEFISSPLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSC 459
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
+RI+L+GTP+QNDLQEF+ L +F NPGVLGSL +RK +EEPI+ SR P++T+ +K LG
Sbjct: 460 ERRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLG 519
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEY------W 643
E R+++L + T FILRRT +V L K+E ++ C+ T LQ LY + +
Sbjct: 520 EKRAAELTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLELYRKLLSSRVISSCL 579
Query: 644 DARASRDSHLSVTHALRKICNHPGLV 669
R HL AL+K+CNHP L+
Sbjct: 580 QGRLENSPHLICIGALKKLCNHPCLL 605
Score = 210 (79.0 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 60/159 (37%), Positives = 88/159 (55%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA 253
R LIVTP SL NW EF+KWLG R+ + V+Q +K E+++ S + V+IISYEML+R+
Sbjct: 364 RALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDHKVEEFISSPLYSVMIISYEMLLRS 423
Query: 254 YQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTA- 312
I EF+LLICDE LK +S + + +L + + P + L+E A
Sbjct: 424 LDQIQAIEFNLLICDEGHRLK---NSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYAL 480
Query: 313 -ETLQCNQINSHLSVTHALRKICNHPGL-VQQPDVMEEE 349
E + + S LS T+ RKI P + ++P +EE
Sbjct: 481 IEFVNPGVLGS-LS-TY--RKIYEEPIVRSREPSATKEE 515
Score = 112 (44.5 bits), Expect = 7.0e-95, Sum P(3) = 7.0e-95
Identities = 29/77 (37%), Positives = 37/77 (48%)
Query: 40 PGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILKDTLGKVI 99
P EA +T+ F+V++ K S KKHK WE D +L G ILKD GK I
Sbjct: 110 PTSGMAKEAAAQEEPDCLTKYFSVMWCKASKKKHKKWEGDAILITKGKSVILKDMEGKDI 169
Query: 100 DS----KVKILDEIKPG 112
K K LD ++ G
Sbjct: 170 GRGTGYKSKELDSLEEG 186
Score = 57 (25.1 bits), Expect = 0.00060, Sum P(3) = 0.00060
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 315 LQCNQINS-HLSVTHALRKICNHPGLV 340
LQ NS HL AL+K+CNHP L+
Sbjct: 579 LQGRLENSPHLICIGALKKLCNHPCLL 605
Score = 47 (21.6 bits), Expect = 7.0e-95, Sum P(3) = 7.0e-95
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 166 HAKTEVNPLILPKPIVDHQ 184
H + N L++P+P HQ
Sbjct: 262 HNPNDTNSLVMPRPNASHQ 280
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 800 (286.7 bits), Expect = 3.8e-94, Sum P(3) = 3.8e-94
Identities = 167/330 (50%), Positives = 217/330 (65%)
Query: 347 EEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEM 406
++ QW N + PLVDV +D +L L+PHQ++G+ FLYE V + GAILADEM
Sbjct: 269 DKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEM 328
Query: 407 GLGKTLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
GLGKTLQCI+LIWTL QGPYG PVI+K LIVTP SL +NW EF+KWLG R+ + V
Sbjct: 329 GLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTV 388
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+Q +K E+++ S VLIISYEML+R+ I + +FDLLICDEGHRLKN K +
Sbjct: 389 DQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALI 448
Query: 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQ 585
L+ KRI+L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR P+++E +
Sbjct: 449 SLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEE 508
Query: 586 KSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA 645
K LGE R+++L T FILRRT ++ L K E ++ CR LQ LY + +
Sbjct: 509 KELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV 568
Query: 646 R------ASRDSHLSVTHALRKICNHPGLV 669
R HL AL+K+CNHP L+
Sbjct: 569 RFCLQGLLENSPHLICIGALKKLCNHPCLL 598
Score = 218 (81.8 bits), Expect = 4.8e-22, Sum P(3) = 4.8e-22
Identities = 59/159 (37%), Positives = 86/159 (54%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI 251
I + LIVTP SL +NW EF+KWLG R+ + V+Q +K E+++ S VLIISYEML+
Sbjct: 355 IKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLL 414
Query: 252 RAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEEST 311
R+ I + +FDLLICDE LK ++ + + SL + + P + L+E
Sbjct: 415 RSLDQIKNIKFDLLICDEGHRLK---NSAIKTTTALISLSCEKRIILTGTPIQNDLQEFF 471
Query: 312 AETLQCNQINSHLSVTHALRKICNHPGLV-QQPDVMEEE 349
A N L + RKI P ++ ++P EEE
Sbjct: 472 ALIDFVNP--GILGSLSSYRKIYEEPIILSREPSASEEE 508
Score = 127 (49.8 bits), Expect = 3.8e-94, Sum P(3) = 3.8e-94
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 36 VYPEPGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILKDT- 94
V+ P VS+ Q + S+ + F+VV+ KPS KKHK WE D VL + G ILK+
Sbjct: 102 VHSAPKEVAVSKEQEEK-SDSLVKYFSVVWCKPSKKKHKKWEGDAVLIVKGKSFILKNLE 160
Query: 95 ---LGKVIDSKVKILDEIKPG 112
+G+ I K K L++I+ G
Sbjct: 161 GKDIGRGIGYKFKELEKIEEG 181
Score = 57 (25.1 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 321 NS-HLSVTHALRKICNHPGLVQQPDVMEEE 349
NS HL AL+K+CNHP L+ + E+E
Sbjct: 578 NSPHLICIGALKKLCNHPCLLFN-SIKEKE 606
Score = 43 (20.2 bits), Expect = 3.8e-94, Sum P(3) = 3.8e-94
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 172 NPLILPKPIVDHQEK-NRRSYILRVLIVTP 200
N L++P+P +HQ N+ + L +++ P
Sbjct: 261 NSLVMPRPDKNHQWVFNKNCFPLVDVVIDP 290
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 800 (286.7 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 165/330 (50%), Positives = 219/330 (66%)
Query: 347 EEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEM 406
++ QW N + P+VDV +D L L+PHQ++G++FLYE V + GAILADEM
Sbjct: 269 DKNHQWLFNKNCFPVVDVVIDPHLVYYLRPHQKEGITFLYECVMGMRVNGRCGAILADEM 328
Query: 407 GLGKTLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
GLGKTLQCI+LIWTL QGPYG P+++K LIVTP SL +NW EF+KWLG+ R+ + V
Sbjct: 329 GLGKTLQCISLIWTLQCQGPYGGKPIVKKTLIVTPGSLVNNWKKEFQKWLGIERIKIFTV 388
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+Q +K E++ S VLIISYEML+R+ I + +FDLLICDEGHRLKN K +
Sbjct: 389 DQDHKVEEFTKSPFYSVLIISYEMLLRSLDQIKNVKFDLLICDEGHRLKNSTIKTTTALI 448
Query: 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQ 585
L+ KRI+L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR P+++E +
Sbjct: 449 SLSCEKRIILTGTPVQNDLQEFFTLIDFVNPGILGSLSAYRKIYEEPIIISRQPSASEEE 508
Query: 586 KSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA 645
+ LGE R+++L T FILRRT +V L K E ++ CR LQ +LY + +
Sbjct: 509 RELGEQRAAELTCLTGLFILRRTQEVINQYLPPKIENVVFCRPGALQIALYRKLLNSQAV 568
Query: 646 R------ASRDSHLSVTHALRKICNHPGLV 669
R SHL AL+K+CNHP L+
Sbjct: 569 RFCLQGLLENTSHLICIGALKKLCNHPCLL 598
Score = 228 (85.3 bits), Expect = 6.5e-25, Sum P(3) = 6.5e-25
Identities = 61/160 (38%), Positives = 89/160 (55%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI 251
+ + LIVTP SL +NW EF+KWLG+ R+ + V+Q +K E++ S VLIISYEML+
Sbjct: 355 VKKTLIVTPGSLVNNWKKEFQKWLGIERIKIFTVDQDHKVEEFTKSPFYSVLIISYEMLL 414
Query: 252 RAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEEST 311
R+ I + +FDLLICDE LK ++ + + SL + + P + L+E
Sbjct: 415 RSLDQIKNVKFDLLICDEGHRLK---NSTIKTTTALISLSCEKRIILTGTPVQNDLQEFF 471
Query: 312 AETLQCNQINSH-LSVTHALRKICNHPGLV-QQPDVMEEE 349
TL + +N L A RKI P ++ +QP EEE
Sbjct: 472 --TL-IDFVNPGILGSLSAYRKIYEEPIIISRQPSASEEE 508
Score = 132 (51.5 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 34/88 (38%), Positives = 48/88 (54%)
Query: 33 HNYVYPEPGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILK 92
H+ V+ P VS+ Q S+ + F+VV+ K S KKHK WE DGVL + G LK
Sbjct: 99 HHTVHSAPKEITVSKGQEEK-PDSLVKYFSVVWCKASKKKHKKWEGDGVLIVKGKSFTLK 157
Query: 93 DTLGKVIDS----KVKILDEIKPGTSSL 116
D GK I K+K L++I+ G + +
Sbjct: 158 DLEGKDIGRGTGYKLKELEKIEEGQTMM 185
Score = 59 (25.8 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 322 SHLSVTHALRKICNHPGLV 340
SHL AL+K+CNHP L+
Sbjct: 580 SHLICIGALKKLCNHPCLL 598
Score = 55 (24.4 bits), Expect = 6.5e-25, Sum P(3) = 6.5e-25
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 342 QPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERV 389
+P M + QW+H P G L ++T D FL R+ R+ VSF ++ +
Sbjct: 863 KPLSMSQLKQWRHFP-GDHL-NLT-DPFLERI-----RENVSFFFQNI 902
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 787 (282.1 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 167/338 (49%), Positives = 216/338 (63%)
Query: 339 LVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE 398
++ +PD QW N G P+VDV +D L L+PHQ++G+ FLYE V +
Sbjct: 265 VMSRPD---NNHQWTFNKKGFPVVDVVIDPHLVYHLRPHQKEGIMFLYECVMGMRVNGRC 321
Query: 399 GAILADEMGLGKTLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGL 457
GAILADEMGLGKTLQCI+LIWTL QGPYG PV++K LIVTP SL +NW EF+KWLG
Sbjct: 322 GAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVVKKTLIVTPGSLVNNWRKEFQKWLGS 381
Query: 458 TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK 517
R+ + V+Q +K E++ S VLIISYEML+R+ I + +F LLICDEGHRLKN
Sbjct: 382 ERIKIFPVDQDHKVEEFTRSPFYSVLIISYEMLLRSLDQIKNVKFGLLICDEGHRLKNSA 441
Query: 518 SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESR 577
K + L+ KR++L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR
Sbjct: 442 IKTTAALISLSCEKRVILTGTPVQNDLQEFFALIDFVNPGILGSLSFYRKVYEEPIIISR 501
Query: 578 SPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYL 637
P+++E +K LGE R+ +L T FILRRT +V L K E ++ CR LQ LY
Sbjct: 502 QPSASEEEKKLGEKRAVELTCLTGLFILRRTQEVINKYLPPKIENVVFCRPGALQIELYR 561
Query: 638 RCVEYWDAR------ASRDSHLSVTHALRKICNHPGLV 669
+ + R HL AL+K+CNHP L+
Sbjct: 562 KLLNSQAVRFCLQGLLGNSPHLICIGALKKLCNHPCLL 599
Score = 211 (79.3 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 59/160 (36%), Positives = 85/160 (53%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI 251
+ + LIVTP SL +NW EF+KWLG R+ + V+Q +K E++ S VLIISYEML+
Sbjct: 356 VKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFPVDQDHKVEEFTRSPFYSVLIISYEMLL 415
Query: 252 RAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEEST 311
R+ I + +F LLICDE LK ++ + + SL + + P + L+E
Sbjct: 416 RSLDQIKNVKFGLLICDEGHRLK---NSAIKTTAALISLSCEKRVILTGTPVQNDLQEFF 472
Query: 312 AETLQCNQ-INSHLSVTHALRKICNHPGLV-QQPDVMEEE 349
A N I LS RK+ P ++ +QP EEE
Sbjct: 473 ALIDFVNPGILGSLSF---YRKVYEEPIIISRQPSASEEE 509
Score = 135 (52.6 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 33/81 (40%), Positives = 44/81 (54%)
Query: 36 VYPEPGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILKDTL 95
V+P P VS+ Q S+ + F+VV+ K S KKHK WE D VL + G LKD
Sbjct: 102 VHPAPKEITVSKGQEEEEPDSLVKYFSVVWCKASKKKHKKWEGDAVLIVKGKSFTLKDLE 161
Query: 96 GKVIDS----KVKILDEIKPG 112
GK I K+K L++I+ G
Sbjct: 162 GKDIGRGMAYKLKELEKIEEG 182
Score = 61 (26.5 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 321 NS-HLSVTHALRKICNHPGLVQQPDVMEEE--GQWKHNPSGKPLVDVTVDGF 369
NS HL AL+K+CNHP L+ + E+E W K L + +D F
Sbjct: 579 NSPHLICIGALKKLCNHPCLLFN-SIKEKECSSTWDGKEE-KSLYEALLDVF 628
Score = 38 (18.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 22/76 (28%), Positives = 31/76 (40%)
Query: 508 DEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRK 567
+EGHR+ G K E+M G+ I SG F L +P + S + +K
Sbjct: 180 EEGHRVMIG-GKEVEIM-GI-ISPDDFSSG--------RCFQLG-IGSPAISSSSQAAKK 227
Query: 568 NFEEPILESRSPNSTE 583
F P P+S E
Sbjct: 228 CFSNPFKSVCKPSSKE 243
Score = 37 (18.1 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 275 PPSGNSPGNDSGIPSL 290
PP+ ++P D GI +
Sbjct: 22 PPARSNPSPDEGITKM 37
>ZFIN|ZDB-GENE-060810-50 [details] [associations]
symbol:rad54b "RAD54 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060810-50 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX511010
IPI:IPI00513586 Ensembl:ENSDART00000138496 Bgee:E9QHY4
Uniprot:E9QHY4
Length = 917
Score = 808 (289.5 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
Identities = 171/398 (42%), Positives = 247/398 (62%)
Query: 284 DSGIPSLPRKSDSGIGSLPCKRPLEES-TAETLQCNQI-NSHLSVTHAL-RKICNHPGLV 340
D+ + +P +S + + P RP+ +S T L+ + +S L R N PG +
Sbjct: 218 DAAV-EIPAESPT-VSKTPAYRPVSKSFTKPALKGGALTDSELDKPICKPRYDPNAPGAL 275
Query: 341 QQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGA 400
P + QW++N SG PLVDV +D L+ L+PHQ++GV FLYE + + GA
Sbjct: 276 VMPRPTADH-QWQYNKSGAPLVDVVIDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGA 334
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTR 459
ILADEMGLGKTLQC+ ++WTLLRQGPYG PV+++ L+V P SL NW EF KWLG R
Sbjct: 335 ILADEMGLGKTLQCVCVLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRER 394
Query: 460 MCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSK 519
+ Y V+Q ++ ED+V S + VL+ISYEML+R+ + + +F +LICDEGHRLKN K
Sbjct: 395 ISVYTVDQDHRVEDFVSSPLCSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIK 454
Query: 520 LYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSP 579
+T L+ +R++L+GTP+QNDLQEF+ + +F NPG+LG+ +RK +EEPIL SR P
Sbjct: 455 TAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSRQP 514
Query: 580 NSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRC 639
+ TE ++ +GE R+++L + T F LRRT ++ L+ + E + C+ T LQ LY
Sbjct: 515 SCTEEERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVL 574
Query: 640 VEYWDARA--------SRDSHLSVTHALRKICNHPGLV 669
+ RA + HL +AL+K+CNHP L+
Sbjct: 575 LSTRPIRACLSGSHTYTHSPHLVCINALKKLCNHPALL 612
Score = 219 (82.2 bits), Expect = 6.6e-21, Sum P(3) = 6.6e-21
Identities = 59/162 (36%), Positives = 84/162 (51%)
Query: 189 RSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYE 248
R + R L+V P SL NW EF KWLG R+ Y V+Q ++ ED+V S + VL+ISYE
Sbjct: 364 RPVMKRALVVCPGSLVKNWAAEFNKWLGRERISVYTVDQDHRVEDFVSSPLCSVLVISYE 423
Query: 249 MLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLE 308
ML+R+ + + +F +LICDE LK + + G + + R +G P + L+
Sbjct: 424 MLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGALTALSCTRRLILTGT---PVQNDLQ 480
Query: 309 ESTAETLQCNQINSHLSVTHALRKICNHPGL-VQQPDVMEEE 349
E + N L + A RKI P L +QP EEE
Sbjct: 481 EFYSIIEFVNP--GILGTSAAYRKIYEEPILRSRQPSCTEEE 520
Score = 104 (41.7 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 30 KENHNYV---YPEPGGTEVSEAQN---SNHA--TSVTRIFNVVYGKPSAKKHKSWEQDGV 81
KENH +PEP + + ++ + HA T+ ++V++ K S++KHK WE D V
Sbjct: 95 KENHIRSMPDFPEPEESVNKDRRSPPLNTHASCTTTAHYYSVIWCKASSRKHKRWEGDAV 154
Query: 82 LEISGTMAILKDTLGKVI 99
L G +LKD G+ I
Sbjct: 155 LVARGRTVVLKDMEGRDI 172
Score = 54 (24.1 bits), Expect = 6.6e-21, Sum P(3) = 6.6e-21
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 156 RPVKKSRLSLHAKTEVNPLILPKPIVDHQEKNRRSYILRVLIVTPSSLTSN 206
+P+ K R +A L++P+P DHQ + +S V +V LT++
Sbjct: 260 KPICKPRYDPNAP---GALVMPRPTADHQWQYNKSGAPLVDVVIDPHLTNH 307
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 786 (281.7 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 167/326 (51%), Positives = 212/326 (65%)
Query: 351 QWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
QW N + P+VDV +D L L+PHQR+G+ FLYE V + GAILADEMGLGK
Sbjct: 169 QWMFNKNHFPIVDVVIDPHLVYHLRPHQREGIIFLYECVMGMRVNGRCGAILADEMGLGK 228
Query: 411 TLQCIALIWTLLRQGPYG-MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN 469
TLQCI+LIWTL QGPYG PVI+K LIVTP SL +NW EF+KWLG R+ + V+ +
Sbjct: 229 TLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDPDH 288
Query: 470 KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
K E++ S + VLIISYEML+R+ I + +FDLLICDEGHRLKN K + L
Sbjct: 289 KVEEFTKSPLYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALFSLPC 348
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
KRI+L+GTP+QNDLQEFF L DF NPG+LGSL +RK +EEPI+ SR P++++ +K LG
Sbjct: 349 EKRIILTGTPVQNDLQEFFSLIDFVNPGILGSLSCYRKIYEEPIITSRQPSASQEEKELG 408
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR--- 646
E R+ +L T FILRRT +V L K E ++ CR LQ LY + + R
Sbjct: 409 ERRACELTCLTGLFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLNSQAVRFCL 468
Query: 647 ---ASRDSHLSVTHALRKICNHPGLV 669
SHL AL+K+CNHP L+
Sbjct: 469 QGLMENSSHLICIGALKKLCNHPCLL 494
Score = 216 (81.1 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 60/161 (37%), Positives = 88/161 (54%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI 251
I + LIVTP SL +NW EF+KWLG R+ + V+ +K E++ S + VLIISYEML+
Sbjct: 251 IKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDPDHKVEEFTKSPLYSVLIISYEMLL 310
Query: 252 RAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEE-- 309
R+ I + +FDLLICDE LK ++ + + SLP + + P + L+E
Sbjct: 311 RSLDQIKNIKFDLLICDEGHRLK---NSAIKTTTALFSLPCEKRIILTGTPVQNDLQEFF 367
Query: 310 STAETLQCNQINSHLSVTHALRKICNHPGLV-QQPDVMEEE 349
S + + + S LS RKI P + +QP +EE
Sbjct: 368 SLIDFVNPGILGS-LS---CYRKIYEEPIITSRQPSASQEE 404
Score = 113 (44.8 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 30/81 (37%), Positives = 42/81 (51%)
Query: 40 PGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILKDT----L 95
P VS Q S+ + F+VV+ K S KKHK WE D VL + G LKD +
Sbjct: 4 PKEVMVSNGQEEE-PDSLVKYFSVVWCKASKKKHKKWEGDAVLIVKGKSFALKDLEGKDI 62
Query: 96 GKVIDSKVKILDEIKPGTSSL 116
G+ I K K L++I+ G + +
Sbjct: 63 GRGIGYKFKELEKIEEGQTMM 83
Score = 66 (28.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 321 NSHLSVTHALRKICNHPGLVQQPDVMEEE--GQWKHN 355
+SHL AL+K+CNHP L+ V E+E W N
Sbjct: 475 SSHLICIGALKKLCNHPCLLFS-SVKEKECSSAWDEN 510
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 702 (252.2 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
Identities = 171/432 (39%), Positives = 245/432 (56%)
Query: 260 TEFDLLICDEKSLLKPP-SGNSPG-NDSGIPSLPRKSDSGIGSLP--CKRPLEESTAETL 315
T +L+ EK + + S SPG ++ + + + GS+ KRPL EST +
Sbjct: 191 TSVPVLMSREKDISRSEISAPSPGLAETRVKESQAANLASRGSISGAYKRPLLESTV--M 248
Query: 316 QCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLK 375
++ + H ++ PG + +M+ G P GK +VDV VD L++ L+
Sbjct: 249 PAASLDEP-TPRHDPKQ----PGAL----IMKRPGS---APKGKRIVDVVVDPILAKHLR 296
Query: 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP-Y-GMPVIR 433
PHQR+GV FLYE V + S + EGAILAD+MGLGKTLQ I L+WTLL+Q P Y PVI+
Sbjct: 297 PHQREGVKFLYECVMGMRSFNGEGAILADDMGLGKTLQTITLLWTLLKQNPIYEAAPVIK 356
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA-EDYVYSRVSPVLIISYEMLIR 492
K LIV P +L +NW EF+KWLG R+ + + K K D+ + ++I+ YE L
Sbjct: 357 KALIVCPVTLINNWRREFRKWLGNERIGVFVFDDKRKRLTDFTMGKAYSIMIVGYEKLRS 416
Query: 493 AYQTIV-DTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551
+ + D++I DEGHRLK ++K + + LN KRI+LSGTP+QNDL+EFF
Sbjct: 417 VQEGLARGNGVDIVIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAV 476
Query: 552 DFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDV 611
D NPGVLGS + F K FE PI+ SR P +TE GE R+ +L + T+ F+LRRT+D+
Sbjct: 477 DLVNPGVLGSFKSFIKEFEGPIVRSRQPEATEKDIEKGEARNEELRELTSQFMLRRTADI 536
Query: 612 QASLLNSKRETLLVCRATPLQQSLY---LRCVEYWDARASRDSHLSVTHALRKICNHPGL 668
A L K E +L C+ T Q +Y L + A + +S L + L+K+CN P L
Sbjct: 537 LADYLPPKTEYVLFCKPTNTQAKIYQNVLASPVFQGALGNSESALQLITILKKLCNSPSL 596
Query: 669 VQQPDMMEEEGQ 680
+ D E+ +
Sbjct: 597 LSLKDANEKPSE 608
Score = 124 (48.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 36/120 (30%), Positives = 55/120 (45%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA-EDYVYSRVSPVLIISYEML 250
I + LIV P +L +NW EF+KWLG R+ + + K K D+ + ++I+ YE L
Sbjct: 355 IKKALIVCPVTLINNWRREFRKWLGNERIGVFVFDDKRKRLTDFTMGKAYSIMIVGYEKL 414
Query: 251 IRAYQTIV-DTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEE 309
+ + D++I DE LK N G I SL + P + L+E
Sbjct: 415 RSVQEGLARGNGVDIVIADEGHRLKTLQ-NKSGQ--AIQSLNATKRIILSGTPIQNDLKE 471
Score = 73 (30.8 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 67 KPSAKKHKSWEQDGVLEISGTMAILKDTLGKVIDSKVKILDEIKPG 112
KP+ KK+K W+ DG++ + L+D G+ + + +KPG
Sbjct: 98 KPTTKKNKIWDGDGIVSVRDGYVYLQDISGRAM-GRAMYGSVLKPG 142
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 159/406 (39%), Positives = 233/406 (57%)
Query: 292 RKSDSGIGSLPCKRPLEESTAETLQ--CNQINSHLSVTHALRKICNHPGLVQQPDVMEEE 349
RK D + + K+ + +S E+ C ++ S + I ++ ++P+ ++
Sbjct: 179 RKKDELLKNRKGKKEISDSEPESDHDSCVSTDTVASCSTEQSLITSNTSKHRRPNKSLKD 238
Query: 350 --GQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMG 407
G K P P V V +D L+R+L+PHQ +GV FLY+ V G I+ADEMG
Sbjct: 239 LLGIQKEKPPPPP-VAVVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMG 297
Query: 408 LGKTLQCIALIWTLLRQGPY-GMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN 466
LGKTLQCIAL+WTLL+Q P G P I K +I PSSL NW +E KWLG + P+ ++
Sbjct: 298 LGKTLQCIALLWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILD 357
Query: 467 QKNKAEDY---------VYSR--VSPVLIISYEMLIRAY-QTIVDTEFDLLICDEGHRLK 514
K+ ++ V+ R PVLI SYE L R+Y + + + E +L+CDEGHRLK
Sbjct: 358 GKSSKQELIMALQQWASVHGRQVTRPVLIASYETL-RSYVEHLNNAEIGMLLCDEGHRLK 416
Query: 515 NGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPIL 574
N S + + LN+++R++LSGTP+QNDL E+F L +FANPG+LGS +EFRKN+E PIL
Sbjct: 417 NSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPIL 476
Query: 575 ESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQS 634
+ R + TE K G+ + ++LAK FI+RRT+D+ + L K E ++ C + Q S
Sbjct: 477 KGRDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLS 536
Query: 635 LYLRCVEYWDA----RASRDSHLSVTHALRKICNHPGLVQQPDMME 676
LY + + R + L L+KICNHP L+ + +E
Sbjct: 537 LYKHFITSPEINKILRGTGSQPLKAIGLLKKICNHPDLLNLTEDLE 582
Score = 125 (49.1 bits), Expect = 0.00042, P = 0.00042
Identities = 34/95 (35%), Positives = 51/95 (53%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY---------VYSR--VS 240
I + +I PSSL NW +E KWLG + P+ ++ K+ ++ V+ R
Sbjct: 323 IEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTR 382
Query: 241 PVLIISYEMLIRAY-QTIVDTEFDLLICDEKSLLK 274
PVLI SYE L R+Y + + + E +L+CDE LK
Sbjct: 383 PVLIASYETL-RSYVEHLNNAEIGMLLCDEGHRLK 416
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 159/372 (42%), Positives = 217/372 (58%)
Query: 326 VTHALRKICNHPGLV-QQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSF 384
V AL LV +P + Q K + P V V VD LS+VL+PHQR+GV F
Sbjct: 105 VRRALHDPLEEGALVLYEPPPLSAHDQLKLDKEKLP-VHVVVDPILSKVLRPHQREGVKF 163
Query: 385 LYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444
L+E V G I+ADEMGLGKTLQCI L+WTLLRQ P P I K ++V+PSSL
Sbjct: 164 LWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEIEKAVVVSPSSLV 223
Query: 445 SNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYSR----VSPVLIISYEMLIRAY 494
NW +E +KWLG R+ P ++ K+ K E ++ R SP+LIISYE
Sbjct: 224 KNWYNEVEKWLG-GRIQPLAIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHV 282
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ L+ICDEGHRLKN +++ Y+ + LN +R+L+SGTP+QNDL E+F L F
Sbjct: 283 GVLKKGNVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFV 342
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
N G+LG+ EF+K+FE PIL+SR ++EA + GE R +L ++RRTSD+ +
Sbjct: 343 NSGILGTAHEFKKHFELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSK 402
Query: 615 LLNSKRETLLVCRATPLQQSLYLRCV-------EYWDARASRDSHLSVTHALRKICNHPG 667
L K E ++ CR TPLQ LY R + E + + S S S+T +L+K+CNHP
Sbjct: 403 YLPVKIEQVVCCRLTPLQTELYKRFLRQAKPEEELREGKMSVSSLSSIT-SLKKLCNHPA 461
Query: 668 LVQQPDMMEEEG 679
L+ + EE+G
Sbjct: 462 LIYDKCVAEEDG 473
Score = 115 (45.5 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYSR----VSP 241
I + ++V+PSSL NW +E +KWLG R+ P ++ K+ K E ++ R SP
Sbjct: 211 IEKAVVVSPSSLVKNWYNEVEKWLG-GRIQPLAIDGGSKDEIDRKLEGFMNQRGARVPSP 269
Query: 242 VLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
+LIISYE + L+ICDE LK
Sbjct: 270 ILIISYETFRLHVGVLKKGNVGLVICDEGHRLK 302
Score = 74 (31.1 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 304 KRPLEESTAET-LQCNQIN-SHLSVTHALRKICNHPGLVQQPDVMEEEG 350
KR L ++ E L+ +++ S LS +L+K+CNHP L+ V EE+G
Sbjct: 425 KRFLRQAKPEEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDG 473
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 159/372 (42%), Positives = 216/372 (58%)
Query: 326 VTHALRKICNHPGLV-QQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSF 384
V AL LV +P + Q K + P V V VD LS+VL+PHQR+GV F
Sbjct: 105 VRRALHDPLEKDALVLYEPPPLSAHDQLKLDKEKLP-VHVVVDPILSKVLRPHQREGVKF 163
Query: 385 LYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444
L+E V G I+ADEMGLGKTLQCI L+WTLLRQ P P I K ++V+PSSL
Sbjct: 164 LWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLV 223
Query: 445 SNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYSR----VSPVLIISYEMLIRAY 494
NW +E KWLG R+ P ++ K+ K E ++ R SP+LIISYE
Sbjct: 224 KNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHV 282
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ L+ICDEGHRLKN +++ Y+ + LN +R+L+SGTP+QNDL E+F L F
Sbjct: 283 GVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFV 342
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
N G+LG+ EF+K+FE PIL+ R ++EA + LGE R +L ++RRTSD+ +
Sbjct: 343 NSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSK 402
Query: 615 LLNSKRETLLVCRATPLQQSLYLRCV-------EYWDARASRDSHLSVTHALRKICNHPG 667
L K E ++ CR TPLQ LY R + E + + S S S+T +L+K+CNHP
Sbjct: 403 YLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSIT-SLKKLCNHPA 461
Query: 668 LVQQPDMMEEEG 679
L+ + EE+G
Sbjct: 462 LIYDKCVEEEDG 473
Score = 111 (44.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 33/91 (36%), Positives = 47/91 (51%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYSR----VSPVL 243
+ ++V+PSSL NW +E KWLG R+ P ++ K+ K E ++ R SP+L
Sbjct: 213 KAVVVSPSSLVKNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPIL 271
Query: 244 IISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
IISYE + L+ICDE LK
Sbjct: 272 IISYETFRLHVGVLQKGSVGLVICDEGHRLK 302
Score = 75 (31.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 304 KRPLEEST-AETLQCNQIN-SHLSVTHALRKICNHPGLVQQPDVMEEEG 350
KR L ++ AE L +++ S LS +L+K+CNHP L+ V EE+G
Sbjct: 425 KRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDG 473
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 158/371 (42%), Positives = 215/371 (57%)
Query: 326 VTHALRKICNHPGLV-QQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSF 384
V AL LV +P + Q K + P V V VD LS+VL+PHQR+GV F
Sbjct: 105 VRRALHDPLEEGALVLYEPPPLSAHDQMKLDKEKLP-VHVVVDPILSKVLRPHQREGVKF 163
Query: 385 LYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444
L+E V G I+ADEMGLGKTLQCI LIWTLLRQ P P I K ++V+PSSL
Sbjct: 164 LWECVTSRRIPGSHGCIMADEMGLGKTLQCITLIWTLLRQSPECKPEIDKAVVVSPSSLV 223
Query: 445 SNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYSR----VSPVLIISYEMLIRAY 494
NW +E KWLG R+ P ++ K+ K E ++ R SP+LIISYE
Sbjct: 224 KNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFMNQRGVRVPSPILIISYETFRLHV 282
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ L+ICDEGHRLKN +++ Y+ + LN +R+L+SGTP+QNDL E+F L F
Sbjct: 283 GVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFV 342
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
N G+LG+ EF+K+FE PIL+ R ++EA + LGE R +L ++RRTSD+ +
Sbjct: 343 NSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSK 402
Query: 615 LLNSKRETLLVCRATPLQQSLYLRCVEYWD-ARASRDSHLSVTHA-----LRKICNHPGL 668
L K E ++ CR TPLQ LY R ++ A R+ ++V+ L+K+CNHP L
Sbjct: 403 YLPVKIEQVVCCRLTPLQTELYKRFLKQAKPAEELREGKMTVSSLSSITLLKKLCNHPAL 462
Query: 669 VQQPDMMEEEG 679
+ + EE+G
Sbjct: 463 IYDKCVEEEDG 473
Score = 111 (44.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 33/91 (36%), Positives = 47/91 (51%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYSR----VSPVL 243
+ ++V+PSSL NW +E KWLG R+ P ++ K+ K E ++ R SP+L
Sbjct: 213 KAVVVSPSSLVKNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFMNQRGVRVPSPIL 271
Query: 244 IISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
IISYE + L+ICDE LK
Sbjct: 272 IISYETFRLHVGVLQKGSVGLVICDEGHRLK 302
Score = 76 (31.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 304 KRPLEEST-AETLQCNQIN-SHLSVTHALRKICNHPGLVQQPDVMEEEG 350
KR L+++ AE L+ ++ S LS L+K+CNHP L+ V EE+G
Sbjct: 425 KRFLKQAKPAEELREGKMTVSSLSSITLLKKLCNHPALIYDKCVEEEDG 473
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 153/358 (42%), Positives = 217/358 (60%)
Query: 339 LVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE 398
++ +P ++ Q K + P V V VD LSRVL+PHQR+GV FL++ V
Sbjct: 108 VLYEPPLLSAHEQLKIDKDKVP-VHVVVDPVLSRVLRPHQREGVKFLWDCVTSRRIPGSH 166
Query: 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLT 458
G I+ADEMGLGKTLQCI L+WTLLRQ P P I K ++V+PSSL NW +E +KWLG
Sbjct: 167 GCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLG-G 225
Query: 459 RMCPYHVNQKNKAE---DYVYS------RV-SPVLIISYEMLIRAYQTIVDTEFDLLICD 508
R+ P ++ +K E V S RV SP+LIISYE + + L+ICD
Sbjct: 226 RIQPLAIDGGSKEEIDRKLVGSMNQRGLRVPSPILIISYETFRLHAEALQKGSVGLVICD 285
Query: 509 EGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKN 568
EGHRLKN +++ Y+ + LN +R+L+SGTP+QNDL E+F L F N G+LG+ +EF+++
Sbjct: 286 EGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRH 345
Query: 569 FEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRA 628
FE PIL+ R +++EA++ GE R +L ++RRTSD+ + L K E ++ CR
Sbjct: 346 FELPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 405
Query: 629 TPLQQSLYLRCV-------EYWDARASRDSHLSVTHALRKICNHPGLVQQPDMMEEEG 679
TPLQ LY + E + + + S S+T +L+K+CNHP L+ + EEEG
Sbjct: 406 TPLQAELYKNFLKQAKPVEELKEGKINVSSLSSIT-SLKKLCNHPALIYDKCVEEEEG 462
Score = 118 (46.6 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 37/101 (36%), Positives = 53/101 (52%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYS--- 237
Q + + I + ++V+PSSL NW +E +KWLG R+ P ++ +K E V S
Sbjct: 192 QSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLG-GRIQPLAIDGGSKEEIDRKLVGSMNQ 250
Query: 238 ---RV-SPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
RV SP+LIISYE + + L+ICDE LK
Sbjct: 251 RGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGHRLK 291
Score = 82 (33.9 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 313 ETLQCNQIN-SHLSVTHALRKICNHPGLVQQPDVMEEEG 350
E L+ +IN S LS +L+K+CNHP L+ V EEEG
Sbjct: 424 EELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEG 462
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 150/358 (41%), Positives = 216/358 (60%)
Query: 339 LVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE 398
++ +P ++ Q K + P V V VD LSRVL+PHQR+GV FL++ V
Sbjct: 108 VLYEPPLLSAHEQLKIDKDKVP-VHVVVDPVLSRVLRPHQREGVKFLWDCVTSRRIPGSH 166
Query: 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLT 458
G I+ADEMGLGKTLQCI L+WTLLRQ P P I K ++V+PSSL NW +E +KWLG
Sbjct: 167 GCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLG-G 225
Query: 459 RMCPYHVNQKNKAE------DYVYSR----VSPVLIISYEMLIRAYQTIVDTEFDLLICD 508
R+ P ++ +K E ++ R SP+LIISYE + + L+ICD
Sbjct: 226 RIQPLAIDGGSKEEIDRKLVGFMNQRGLRVPSPILIISYETFRLHAEALQKGSVGLVICD 285
Query: 509 EGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKN 568
EGHRLKN +++ Y+ + LN +R+L+SGTP+QNDL E+F L F N G+LG+ +EF+++
Sbjct: 286 EGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRH 345
Query: 569 FEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRA 628
FE PIL+ R +++EA++ GE R +L ++RRTSD+ + L K E ++ CR
Sbjct: 346 FELPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 405
Query: 629 TPLQQSLYLRCV-------EYWDARASRDSHLSVTHALRKICNHPGLVQQPDMMEEEG 679
TPLQ LY + E + + + S S+T +L+K+CNHP L+ + EEEG
Sbjct: 406 TPLQAELYKNFLKQAKPVEELKEGKINVSSLSSIT-SLKKLCNHPALIYDKCVEEEEG 462
Score = 117 (46.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 34/101 (33%), Positives = 52/101 (51%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE------DYVYS 237
Q + + I + ++V+PSSL NW +E +KWLG R+ P ++ +K E ++
Sbjct: 192 QSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLG-GRIQPLAIDGGSKEEIDRKLVGFMNQ 250
Query: 238 R----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
R SP+LIISYE + + L+ICDE LK
Sbjct: 251 RGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGHRLK 291
Score = 82 (33.9 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 313 ETLQCNQIN-SHLSVTHALRKICNHPGLVQQPDVMEEEG 350
E L+ +IN S LS +L+K+CNHP L+ V EEEG
Sbjct: 424 EELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEG 462
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 150/358 (41%), Positives = 216/358 (60%)
Query: 339 LVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE 398
++ +P ++ Q K + P V V VD LSRVL+PHQR+GV FL++ V
Sbjct: 117 VLYEPPLLSAHEQLKIDKDKVP-VHVVVDPVLSRVLRPHQREGVKFLWDCVTSRRIPGSH 175
Query: 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLT 458
G I+ADEMGLGKTLQCI L+WTLLRQ P P I K ++V+PSSL NW +E +KWLG
Sbjct: 176 GCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLG-G 234
Query: 459 RMCPYHVNQKNKAE------DYVYSR----VSPVLIISYEMLIRAYQTIVDTEFDLLICD 508
R+ P ++ +K E ++ R SP+LIISYE + + L+ICD
Sbjct: 235 RIQPLAIDGGSKEEIDRKLVGFMNQRGLRVPSPILIISYETFRLHAEALQKGSVGLVICD 294
Query: 509 EGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKN 568
EGHRLKN +++ Y+ + LN +R+L+SGTP+QNDL E+F L F N G+LG+ +EF+++
Sbjct: 295 EGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRH 354
Query: 569 FEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRA 628
FE PIL+ R +++EA++ GE R +L ++RRTSD+ + L K E ++ CR
Sbjct: 355 FELPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 414
Query: 629 TPLQQSLYLRCV-------EYWDARASRDSHLSVTHALRKICNHPGLVQQPDMMEEEG 679
TPLQ LY + E + + + S S+T +L+K+CNHP L+ + EEEG
Sbjct: 415 TPLQAELYKNFLKQAKPVEELKEGKINVSSLSSIT-SLKKLCNHPALIYDKCVEEEEG 471
Score = 117 (46.2 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 34/101 (33%), Positives = 52/101 (51%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE------DYVYS 237
Q + + I + ++V+PSSL NW +E +KWLG R+ P ++ +K E ++
Sbjct: 201 QSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLG-GRIQPLAIDGGSKEEIDRKLVGFMNQ 259
Query: 238 R----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
R SP+LIISYE + + L+ICDE LK
Sbjct: 260 RGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGHRLK 300
Score = 82 (33.9 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 313 ETLQCNQIN-SHLSVTHALRKICNHPGLVQQPDVMEEEG 350
E L+ +IN S LS +L+K+CNHP L+ V EEEG
Sbjct: 433 EELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEG 471
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 156/371 (42%), Positives = 216/371 (58%)
Query: 326 VTHALRKICNHPGLV-QQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSF 384
V AL LV +P + Q K + P V V VD LS+VL+PHQR+GV F
Sbjct: 106 VRRALHDPLEEGALVLYEPPPLSAHDQLKFDKEKLP-VHVVVDPILSKVLRPHQREGVKF 164
Query: 385 LYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444
L+E V G I+ADEMGLGKTLQCI L+WTLLRQ P P I K ++V+PSSL
Sbjct: 165 LWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIDKAVVVSPSSLV 224
Query: 445 SNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYSR----VSPVLIISYEMLIRAY 494
NW +E KWLG R+ P ++ K+ K E ++ R SP+LIISYE
Sbjct: 225 RNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHV 283
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ L+ICDEGHRLKN +++ Y+ + LN +R+L+SGTP+QNDL E+F L F
Sbjct: 284 GVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFV 343
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
N G+LG+ +EF+K+FE PIL+ R ++E + +GE R +L ++RRTSD+ +
Sbjct: 344 NSGILGTAQEFKKHFELPILKGRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDILSK 403
Query: 615 LLNSKRETLLVCRATPLQQSLYLRCV-EYWDARASRDSHLSVTH-----ALRKICNHPGL 668
L K E ++ CR TPLQ LY R + + A R+ +SV+ +L+K+CNHP L
Sbjct: 404 YLPVKIEQVVCCRLTPLQIELYKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPAL 463
Query: 669 VQQPDMMEEEG 679
+ + EE+G
Sbjct: 464 IYDKCVEEEDG 474
Score = 111 (44.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 35/101 (34%), Positives = 51/101 (50%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYS 237
Q + + I + ++V+PSSL NW +E KWLG R+ P ++ K+ K E ++
Sbjct: 204 QSPDCKPEIDKAVVVSPSSLVRNWYNEVGKWLG-GRIQPLAIDGGSKDEIDQKLEGFMNQ 262
Query: 238 R----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
R SP+LIISYE + L+ICDE LK
Sbjct: 263 RGARVPSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLK 303
Score = 81 (33.6 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 304 KRPLEEST-AETLQCNQIN-SHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPL 361
KR L ++ AE L+ +++ S LS +L+K+CNHP L+ V EE+G +
Sbjct: 426 KRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGF-------EGT 478
Query: 362 VDVTVDGFLSRVLKP 376
+D+ G+ S+ L+P
Sbjct: 479 LDIFPPGYNSKALEP 493
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 157/371 (42%), Positives = 214/371 (57%)
Query: 326 VTHALRKICNHPGLV-QQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSF 384
V AL LV +P + Q K + P V V VD LS+VL+PHQR+GV F
Sbjct: 105 VRRALHDPLEEGALVLYEPPPLSAHDQLKLDKEKLP-VHVVVDPVLSKVLRPHQREGVRF 163
Query: 385 LYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444
L+E V G I+ADEMGLGKTLQCI L+WTLLRQ P P I K ++V+PSSL
Sbjct: 164 LWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIDKAVVVSPSSLV 223
Query: 445 SNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYSR----VSPVLIISYEMLIRAY 494
NW +E KWLG R+ P ++ K+ K E ++ R SP+LIISYE
Sbjct: 224 KNWYNEVGKWLG-GRIQPLAIDAGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHV 282
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ L+ICDEGHRLKN +++ Y+ + LN +R+L+SGTP+QNDL E+F L F
Sbjct: 283 GVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFV 342
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
N G+LG+ EF+K FE PIL+ R ++E + LGE R +L ++RRTSD+ +
Sbjct: 343 NSGLLGTAHEFKKRFELPILKGRDAAASEEDRRLGEERLRELTSIVNRCLIRRTSDILSK 402
Query: 615 LLNSKRETLLVCRATPLQQSLYLRCV-EYWDARASRDSHLSVTH-----ALRKICNHPGL 668
L K E ++ CR TPLQ LY R + + A R+ +SV+ +L+K+CNHP L
Sbjct: 403 YLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPAL 462
Query: 669 VQQPDMMEEEG 679
+ + EE+G
Sbjct: 463 IYDKCVEEEDG 473
Score = 112 (44.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 35/101 (34%), Positives = 51/101 (50%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKN----KAEDYVYS 237
Q + + I + ++V+PSSL NW +E KWLG R+ P ++ K+ K E ++
Sbjct: 203 QSPDCKPEIDKAVVVSPSSLVKNWYNEVGKWLG-GRIQPLAIDAGSKDEIDQKLEGFMNQ 261
Query: 238 R----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
R SP+LIISYE + L+ICDE LK
Sbjct: 262 RGARVPSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLK 302
Score = 79 (32.9 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 304 KRPLEEST-AETLQCNQIN-SHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPL 361
KR L ++ AE L+ +++ S LS +L+K+CNHP L+ V EE+G +G
Sbjct: 425 KRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGF-----AGA-- 477
Query: 362 VDVTVDGFLSRVLKP 376
+D G+ S+ L+P
Sbjct: 478 LDFFPPGYSSKALEP 492
>CGD|CAL0004359 [details] [associations]
symbol:RDH54 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0032392
"DNA geometric change" evidence=IEA] [GO:0045144 "meiotic sister
chromatid segregation" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] [GO:0030491 "heteroduplex
formation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004359 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
RefSeq:XP_717090.1 RefSeq:XP_717169.1 ProteinModelPortal:Q5A5N2
STRING:Q5A5N2 GeneID:3641231 GeneID:3641299 KEGG:cal:CaO19.12827
KEGG:cal:CaO19.5367 Uniprot:Q5A5N2
Length = 796
Score = 610 (219.8 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 141/383 (36%), Positives = 213/383 (55%)
Query: 306 PLEESTAETLQCNQINSHLS-VTHALRKICNHPGLVQQP--DVMEEEGQWKHNPSGKPLV 362
P E E + N + ++ VTH +K+ ++P D + P K V
Sbjct: 124 PYELELDEKVGSNSTSQTVTRVTHQFKKVAPPTASSRKPLYDDCADAIALPPPPKAKDYV 183
Query: 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422
V +D L++VL+PHQ +GV F+YE + G +LADEMGLGKTL I IWTLL
Sbjct: 184 KVNIDPHLAKVLRPHQVEGVKFMYECLMGYRGFGGHGCLLADEMGLGKTLMTITTIWTLL 243
Query: 423 RQGPYGMP--VIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ--KNKAEDYV-YS 477
+Q P+ V+ KVL+V P +L SNW EF+KWLG ++ +N N+ +D + +
Sbjct: 244 KQNPFMEKGAVVNKVLVVCPVTLISNWRQEFRKWLGANKLNVLTLNNPMSNEKQDILNFG 303
Query: 478 RVS--PVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILL 535
+++ VL+++YE L+ + + +FDLL+CDEGHRLKN +K+ + LNI K+I+L
Sbjct: 304 KLNVYQVLVVNYEKLVAHFDELSAVKFDLLVCDEGHRLKNSANKVLNNLIKLNIPKKIVL 363
Query: 536 SGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQ-KSLGELRSS 594
+GTP+QN+L EF L F NPGVL L+ F++NF PI +R N + + K GE S
Sbjct: 364 TGTPIQNELVEFHTLISFLNPGVLPELKLFQRNFITPISRARDINCFDPEVKKRGEEISQ 423
Query: 595 QLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLS 654
QL + T FILRRT + A+ L K + LL T LQ L+ + ++ +
Sbjct: 424 QLIELTQSFILRRTQAILANYLTQKTDILLFVPPTSLQLKLFDYITNL--KKFNQFEAFT 481
Query: 655 VTHALRKICNHPGLVQQPDMMEE 677
+ + +KICN P L+ ++ ++
Sbjct: 482 MINLFKKICNSPSLLADDELFKK 504
Score = 159 (61.0 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 36/105 (34%), Positives = 62/105 (59%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ--KNKAEDYV-YSRVS--PVLIISYE 248
+VL+V P +L SNW EF+KWLG ++ +N N+ +D + + +++ VL+++YE
Sbjct: 257 KVLVVCPVTLISNWRQEFRKWLGANKLNVLTLNNPMSNEKQDILNFGKLNVYQVLVVNYE 316
Query: 249 MLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRK 293
L+ + + +FDLL+CDE LK S N N+ ++P+K
Sbjct: 317 KLVAHFDELSAVKFDLLVCDEGHRLKN-SANKVLNNLIKLNIPKK 360
Score = 57 (25.1 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 63 VVYGKPSAKKHKSWEQDGVLEI----SGTMAI-LKDTLGKVIDSKV-----KILDEIKPG 112
+ + K ++KK+K+W+ DG I +G I +K++ GK + +V + D I G
Sbjct: 64 IQWRKKTSKKNKTWDGDGYAVIKQLENGACEISIKNSDGKPMGKRVFTATPNLDDVISVG 123
Query: 113 TSSLQSSPRLNASDNVQSST 132
L+ ++ ++ Q+ T
Sbjct: 124 PYELELDEKVGSNSTSQTVT 143
Score = 48 (22.0 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 318 NQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHN---PSGK 359
NQ + ++ + +KICN P L+ ++ ++ + K N SGK
Sbjct: 475 NQFEA-FTMINLFKKICNSPSLLADDELFKKIVEEKFNLGMASGK 518
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 626 (225.4 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 139/333 (41%), Positives = 196/333 (58%)
Query: 353 KHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTL 412
K +P V V +D L++VL+PHQ V FLY + + G I+AD MGLGKTL
Sbjct: 222 KKKVENRPKVPVVIDPRLAKVLRPHQ---VQFLYRCTTGMIDRNAHGCIMADGMGLGKTL 278
Query: 413 QCIALIWTLLRQGPY-GMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQK-NK 470
QCI+L+WTLL+Q P G I+K +I PSSL NW +E KWLG + P+ V+ K +K
Sbjct: 279 QCISLMWTLLKQSPEAGKTTIQKCIIACPSSLVGNWANELGKWLGKDTITPFAVDGKASK 338
Query: 471 AE------DYVYSR----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKL 520
E + S V PVLI+SYE L T+ D+ LL+CDEGHRLKN +S
Sbjct: 339 TELTSQLKQWAISSGRSIVRPVLIVSYETLRMYVDTLKDSPIGLLLCDEGHRLKNKESLT 398
Query: 521 YELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPN 580
+ + LN+++R++LSGTP+QNDL E+F L +FANP +LGS EFRK FE PIL+ R
Sbjct: 399 WTALNSLNVQRRVILSGTPIQNDLSEYFALLNFANPDLLGSQNEFRKRFEIPILKGRDAA 458
Query: 581 STEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
TE + G+ R ++L+ FI+RRT+D+ + L K E ++ C + Q LY +
Sbjct: 459 GTEEDRKKGDERLAELSSIVNKFIIRRTNDILSKYLPVKYEHVVFCNLSQFQLDLYKHFI 518
Query: 641 EYWDARA---SRDSH-LSVTHALRKICNHPGLV 669
+ + ++ + S L L+K+CNHP L+
Sbjct: 519 DSPEIKSLLRGKGSQPLKAIGILKKLCNHPDLL 551
Score = 138 (53.6 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 37/97 (38%), Positives = 51/97 (52%)
Query: 189 RSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQK-NKAE------DYVYSR--- 238
++ I + +I PSSL NW +E KWLG + P+ V+ K +K E + S
Sbjct: 296 KTTIQKCIIACPSSLVGNWANELGKWLGKDTITPFAVDGKASKTELTSQLKQWAISSGRS 355
Query: 239 -VSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
V PVLI+SYE L T+ D+ LL+CDE LK
Sbjct: 356 IVRPVLIVSYETLRMYVDTLKDSPIGLLLCDEGHRLK 392
Score = 47 (21.6 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 330 LRKICNHPGLV 340
L+K+CNHP L+
Sbjct: 541 LKKLCNHPDLL 551
Score = 37 (18.1 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 100 DSKVKILDEIKPGTSSLQSSPRLNASD 126
D V +DE+KP +S ++ D
Sbjct: 181 DPTVDDIDEVKPEKQDNDASDKIQKLD 207
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 149/364 (40%), Positives = 216/364 (59%)
Query: 336 HPG--LVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
H G ++ P+ + E Q K + K V V D + ++L+PHQR GV F+++ V +
Sbjct: 164 HEGALILYAPEHLSEHAQLKEDKDRK--VHVVADPVVGKILRPHQRDGVKFMWDCVTGIN 221
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQCI+L+WTLLRQ P P + K +IV PSSL NW+ E KK
Sbjct: 222 IPEFHGCIMADEMGLGKTLQCISLLWTLLRQSPDACPTVSKSIIVCPSSLVKNWDKEIKK 281
Query: 454 WLGLTRMCPYHVNQKNKAEDYVY--------SRVS---PVLIISYEMLIRAYQTIVDT-E 501
WLG TR+ V+ K E + S++ PVLIISYE R Y I+ + +
Sbjct: 282 WLG-TRLNAMPVDS-GKREQIIACLNSFMADSKMRCAIPVLIISYETF-RLYANILHSGD 338
Query: 502 FDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGS 561
++ICDEGHRLKN ++ Y+ ++GL +R+L+SGTP+QNDL E+F L +F NPG+LG+
Sbjct: 339 VGIVICDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGT 398
Query: 562 LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRE 621
EFRK FE IL+ R +++ + GE ++ ++ I+RRTS + L K E
Sbjct: 399 ASEFRKKFENAILKGRDADASSEDQKKGEEKTKEMISLVEKCIIRRTSALLTKYLPVKYE 458
Query: 622 TLLVCRATPLQQSLYLRCVEYWDAR--ASRD-----SHLS-VTHALRKICNHPGLV---- 669
++ C+ + LQ++LY + +E +D S LS +TH L+K+CNHP LV
Sbjct: 459 HIICCKNSTLQETLYNKLIECEKQNRIVEKDKGATASALSFITH-LKKLCNHPYLVYDEF 517
Query: 670 QQPD 673
Q+PD
Sbjct: 518 QKPD 521
Score = 119 (46.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 37/95 (38%), Positives = 51/95 (53%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVY--------SRVS--- 240
+ + +IV PSSL NW+ E KKWLG TR+ V+ K E + S++
Sbjct: 260 VSKSIIVCPSSLVKNWDKEIKKWLG-TRLNAMPVDS-GKREQIIACLNSFMADSKMRCAI 317
Query: 241 PVLIISYEMLIRAYQTIVDT-EFDLLICDEKSLLK 274
PVLIISYE R Y I+ + + ++ICDE LK
Sbjct: 318 PVLIISYETF-RLYANILHSGDVGIVICDEGHRLK 351
Score = 60 (26.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 322 SHLS-VTHALRKICNHPGLV----QQPD 344
S LS +TH L+K+CNHP LV Q+PD
Sbjct: 495 SALSFITH-LKKLCNHPYLVYDEFQKPD 521
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 149/364 (40%), Positives = 211/364 (57%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L Q P+ E E + +PS K LV V VD LS +L+PHQR+GV F+YE V +
Sbjct: 121 CNALVLFQPPNYTEHE-RMSMDPS-KVLVHVVVDPLLSNILRPHQREGVRFMYECV-EGK 177
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
D G I+ADEMGLGKTLQC+ L+WTLLRQGP P I K ++V+PSSL NW EF K
Sbjct: 178 KGDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESKPTINKAIVVSPSSLVKNWEKEFTK 237
Query: 454 WLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVLIISYEMLIRAYQTIV-DTEFDL 504
WL +C K E + S++ +PVL+ISYE R Y I+ E +
Sbjct: 238 WLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVLLISYETF-RIYAEILCKYEVGM 296
Query: 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLRE 564
+ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +
Sbjct: 297 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAAD 356
Query: 565 FRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624
F++NFE IL ++ +STE ++ ++ +L I+RRT+ + L K E ++
Sbjct: 357 FKRNFENSILRGQNADSTEGERKKAIEKTQELIGLVDQCIIRRTNQILTKYLPIKFEMVI 416
Query: 625 VCRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMM 675
+ T +Q LY R + + +AS + +T L+KIC+HP L+ Q
Sbjct: 417 CVKLTAIQLQLYTNFLNSDQVRRSLADCNEKASLTALADIT-TLKKICSHPDLIHQKIEA 475
Query: 676 EEEG 679
+E+G
Sbjct: 476 KEKG 479
Score = 112 (44.5 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 34/92 (36%), Positives = 47/92 (51%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVL 243
I + ++V+PSSL NW EF KWL +C K E + S++ +PVL
Sbjct: 216 INKAIVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGTPVL 275
Query: 244 IISYEMLIRAYQTIV-DTEFDLLICDEKSLLK 274
+ISYE R Y I+ E ++ICDE LK
Sbjct: 276 LISYETF-RIYAEILCKYEVGMVICDEGHRLK 306
Score = 59 (25.8 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 317 CNQINSHLSVTH--ALRKICNHPGLVQQPDVMEEEG 350
CN+ S ++ L+KIC+HP L+ Q +E+G
Sbjct: 444 CNEKASLTALADITTLKKICSHPDLIHQKIEAKEKG 479
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 141/334 (42%), Positives = 204/334 (61%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
V V VD LS+VL+PHQR+GV FL++ V + G I+ADEMGLGKTLQCI LIWTL
Sbjct: 135 VHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTL 194
Query: 422 LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE------DYV 475
L+Q P P I KV++V+PSSL NW +E KWLG R+ P ++ +K E +++
Sbjct: 195 LKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLG-GRVQPVAIDGGSKDEIDSKLVNFI 253
Query: 476 YS---RV-SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
R+ +P+LIISYE + + + L+ICDEGHRLKN ++ Y + +N ++
Sbjct: 254 SQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQR 313
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+L+SGTP+QNDL E+F L F N G+LG+ +EF+K FE PIL+ R ++++ ++ GE
Sbjct: 314 RVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQ 373
Query: 592 RSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY------LRCVEYWDA 645
+ +L ++RRTSD+ + L K E ++ C TPLQ+ LY + VE
Sbjct: 374 KLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQT 433
Query: 646 RASRDSHLSVTHALRKICNHPGLVQQPDMMEEEG 679
S LS +L+K+CNHP L+ + + EEG
Sbjct: 434 GKISVSSLSSITSLKKLCNHPALIYEKCLTGEEG 467
Score = 115 (45.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 34/101 (33%), Positives = 55/101 (54%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE------DYVYS 237
Q + + I +V++V+PSSL NW +E KWLG R+ P ++ +K E +++
Sbjct: 197 QSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLG-GRVQPVAIDGGSKDEIDSKLVNFISQ 255
Query: 238 ---RV-SPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLK 274
R+ +P+LIISYE + + + L+ICDE LK
Sbjct: 256 QGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLK 296
Score = 79 (32.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 313 ETLQCNQIN-SHLSVTHALRKICNHPGLVQQPDVMEEEG 350
E+LQ +I+ S LS +L+K+CNHP L+ + + EEG
Sbjct: 429 ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEG 467
>DICTYBASE|DDB_G0285117 [details] [associations]
symbol:rad54b "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0285117 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000074 KO:K10877 RefSeq:XP_639875.1 STRING:Q54NP1
EnsemblProtists:DDB0232413 GeneID:8624946 KEGG:ddi:DDB_G0285117
InParanoid:Q54NP1 OMA:PINKSRE ProtClustDB:CLSZ2735674
Uniprot:Q54NP1
Length = 989
Score = 640 (230.4 bits), Expect = 4.1e-62, P = 4.1e-62
Identities = 169/465 (36%), Positives = 253/465 (54%)
Query: 242 VLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSL 301
V I S E+LI I EF+ E SL+ + +S + + I L +K
Sbjct: 140 VFISSKEVLIE--HIITSKEFEKATGLESSLVSNSTSSSSLSTTTIRKLSKKQQKLQEEE 197
Query: 302 PCKRPLEESTAETLQCN------QINSHLSVTH--ALRKI-CNHPGLVQQPDVMEEEGQW 352
K+ ++ +T N + SH S+ + +KI C H + +
Sbjct: 198 EEKQQQQQDEKQTTNINKSTIKKEFKSHTSLEEQKSSKKIVCPHDPNSKDALIFYSPPPS 257
Query: 353 KHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLD-LEGAILADEMGLGKT 411
+ + G +V V +D ++ R L+PHQR+GV FLY+ V ++ + GAILAD+MGLGKT
Sbjct: 258 QLDEEGNKVVHVVLDPYIGRHLRPHQRRGVKFLYDCVTGNSNDNGYSGAILADQMGLGKT 317
Query: 412 LQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPY----HVNQ 467
LQ +AL+WTLL+Q PYG P I+K +IVTPS+L +NW E +KW G R+ + +
Sbjct: 318 LQTLALLWTLLKQSPYGKPTIKKAIIVTPSTLVNNWKSEIQKWFGNGRLIASTLTDSLTK 377
Query: 468 KNKAE--DYVYSRVSPVLIISYEMLIRAYQTIVDT-EFDLLICDEGHRLKNGKSKLYELM 524
+ KA D+ S + PVLIISYE R + ++T L++CDE HRLKN +K + +
Sbjct: 378 ETKANLNDFNTS-IKPVLIISYEQC-RIFSKELETMSCGLMVCDEAHRLKNSNAKTTQSI 435
Query: 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESR-SPNSTE 583
+ ++ILL+GTP+QN+L EF+ + DFANP LGSL +F+K+F PI +SR SPNST
Sbjct: 436 MSVRCDRKILLTGTPIQNNLVEFYSMMDFANPNCLGSLADFKKSFIIPINKSRESPNSTS 495
Query: 584 AQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYW 643
+ G +S QL+K FI+RR S++ L KR ++ C+ + LQ LY +
Sbjct: 496 TSE--GIRKSIQLSKLVKPFIIRRKSNILEKYLPPKRVQIIFCKLSSLQIELYKSILNSN 553
Query: 644 DARA------SRDS--HLSVTHALRKICNHPGLVQQPDMMEEEGQ 680
++ SR S LS L+K+CN P L+ + +E G+
Sbjct: 554 SVKSLLSGGGSRGSATSLSTITLLKKLCNSPSLLLLNNKQDEGGE 598
Score = 128 (50.1 bits), Expect = 0.00024, P = 0.00024
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPY----HVNQKNKAE--DYVYSRVSPVLII 245
I + +IVTPS+L +NW E +KW G R+ + ++ KA D+ S + PVLII
Sbjct: 338 IKKAIIVTPSTLVNNWKSEIQKWFGNGRLIASTLTDSLTKETKANLNDFNTS-IKPVLII 396
Query: 246 SYEMLIRAYQTIVDT-EFDLLICDEKSLLK 274
SYE R + ++T L++CDE LK
Sbjct: 397 SYEQC-RIFSKELETMSCGLMVCDEAHRLK 425
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 580 (209.2 bits), Expect = 4.6e-62, Sum P(2) = 4.6e-62
Identities = 126/301 (41%), Positives = 178/301 (59%)
Query: 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLT 458
G I+ADEMGLGKTLQCIAL+WTLLRQGP G +I K +IV PSSL +NW +E KWLG
Sbjct: 330 GCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWLGPN 389
Query: 459 RMCPYHVNQKNKAED----------YVYSR------VSPVLIISYEMLIRAYQTIVDTEF 502
+ P V+ K + + +++ V PVLIISYE L R + +
Sbjct: 390 TLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNVDQLKNCNV 449
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
L++ DEGHRLKNG S + + ++ +R++LSGTP+QNDL E+F L F+NPG+LGS
Sbjct: 450 GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALLSFSNPGLLGSR 509
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
EFRKNFE PIL R ++T+ + + GE + +L+ + FI+RRT+D+ A L K E
Sbjct: 510 AEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRTNDILAKYLPCKYEH 569
Query: 623 LLVCRATPLQQSLYLRCVEYWDAR-----ASRDSHLSVTHALRKICNHPGLVQQPDMMEE 677
++ PLQ LY + ++ + + L L+K+CNHP L+ D ++
Sbjct: 570 VIFVNLKPLQNELYNKLIKSREVKKVVKGVGGSQPLRAIGILKKLCNHPNLLNFEDEFDD 629
Query: 678 E 678
E
Sbjct: 630 E 630
Score = 82 (33.9 bits), Expect = 4.6e-62, Sum P(2) = 4.6e-62
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 331 RKICNHPGL----VQQPDVMEEEGQWKHNPSGKPL---VDVTVDGFLSRVLKPHQRQGVS 383
++I HP L V+ + E G +++ K V V +D L+++L+PHQ +GV
Sbjct: 221 QRIGRHPALMTNGVRNKPLRELLGDSENSAENKKKFASVPVVIDPKLAKILRPHQVEGVR 280
Query: 384 FLYERVCDLASLD 396
FLY V L D
Sbjct: 281 FLYRCVTGLVMKD 293
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 138/342 (40%), Positives = 199/342 (58%)
Query: 355 NPSGK----PLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
NP K P V V +D L+++L+PHQ GV FLY L +G I+ADEMGLGK
Sbjct: 233 NPEEKLSKYPDVPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDARAKGCIMADEMGLGK 292
Query: 411 TLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK 470
TLQC+ L+WTLLRQ P G I K +IV PSSL NW +E KWLG + P V+ K+
Sbjct: 293 TLQCLTLMWTLLRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGALTPLAVDGKST 352
Query: 471 AEDYV------YSR------VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKS 518
+ +S V PVLIISYE L R + TE L++ DEGHRLKNG S
Sbjct: 353 KNSELGTALQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGTEVGLMLADEGHRLKNGDS 412
Query: 519 KLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRS 578
+ + L +R++LSGTP+QNDL E+F L +FANPG LG+ EF+KN+E IL+ R
Sbjct: 413 LTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEFKKNYENAILKGRD 472
Query: 579 PNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLR 638
+++ ++ G+ + ++L++ + FI+RRT+D+ + L K E +L +P+Q+ +Y
Sbjct: 473 STASDEEREKGDKKLNELSQMVSKFIIRRTNDILSKYLPIKYEYVLFTGLSPMQKDIYNH 532
Query: 639 CVEYWDAR----ASRDSHLSVTHALRKICNHPGLVQQPDMME 676
+ + + + L L+K+CNHP L+ P+ +E
Sbjct: 533 FITSPEIKKLMKGTGSQPLKAIGMLKKLCNHPDLLDLPEDVE 574
Score = 124 (48.7 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 41/119 (34%), Positives = 59/119 (49%)
Query: 174 LILPKPIVDHQEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 233
L L ++ + +R+ I + +IV PSSL NW +E KWLG + P V+ K+
Sbjct: 297 LTLMWTLLRQSPRGKRT-IEKCIIVCPSSLVRNWANEIVKWLGEGALTPLAVDGKSTKNS 355
Query: 234 YV------YSR------VSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNS 280
+ +S V PVLIISYE L R + TE L++ DE LK +G+S
Sbjct: 356 ELGTALQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGTEVGLMLADEGHRLK--NGDS 412
Score = 57 (25.1 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 330 LRKICNHPGLVQQPDVME 347
L+K+CNHP L+ P+ +E
Sbjct: 557 LKKLCNHPDLLDLPEDVE 574
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 138/342 (40%), Positives = 199/342 (58%)
Query: 355 NPSGK----PLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGK 410
NP K P V V +D L+++L+PHQ GV FLY L +G I+ADEMGLGK
Sbjct: 233 NPEEKLSKYPDVPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDARAKGCIMADEMGLGK 292
Query: 411 TLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK 470
TLQC+ L+WTLLRQ P G I K +IV PSSL NW +E KWLG + P V+ K+
Sbjct: 293 TLQCLTLMWTLLRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGALTPLAVDGKST 352
Query: 471 AEDYV------YSR------VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKS 518
+ +S V PVLIISYE L R + TE L++ DEGHRLKNG S
Sbjct: 353 KNSELGTALQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGTEVGLMLADEGHRLKNGDS 412
Query: 519 KLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRS 578
+ + L +R++LSGTP+QNDL E+F L +FANPG LG+ EF+KN+E IL+ R
Sbjct: 413 LTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEFKKNYENAILKGRD 472
Query: 579 PNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLR 638
+++ ++ G+ + ++L++ + FI+RRT+D+ + L K E +L +P+Q+ +Y
Sbjct: 473 STASDEEREKGDKKLNELSQMVSKFIIRRTNDILSKYLPIKYEYVLFTGLSPMQKDIYNH 532
Query: 639 CVEYWDAR----ASRDSHLSVTHALRKICNHPGLVQQPDMME 676
+ + + + L L+K+CNHP L+ P+ +E
Sbjct: 533 FITSPEIKKLMKGTGSQPLKAIGMLKKLCNHPDLLDLPEDVE 574
Score = 124 (48.7 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 41/119 (34%), Positives = 59/119 (49%)
Query: 174 LILPKPIVDHQEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 233
L L ++ + +R+ I + +IV PSSL NW +E KWLG + P V+ K+
Sbjct: 297 LTLMWTLLRQSPRGKRT-IEKCIIVCPSSLVRNWANEIVKWLGEGALTPLAVDGKSTKNS 355
Query: 234 YV------YSR------VSPVLIISYEMLIRAYQTIVDTEFDLLICDEKSLLKPPSGNS 280
+ +S V PVLIISYE L R + TE L++ DE LK +G+S
Sbjct: 356 ELGTALQQWSTAQGRNIVRPVLIISYETLRRNVDKLAGTEVGLMLADEGHRLK--NGDS 412
Score = 57 (25.1 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 330 LRKICNHPGLVQQPDVME 347
L+K+CNHP L+ P+ +E
Sbjct: 557 LKKLCNHPDLLDLPEDVE 574
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 605 (218.0 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 142/365 (38%), Positives = 211/365 (57%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN ++ P V E + K +P+ K LV V VD LS +L+PHQR+GV F+Y+ V +
Sbjct: 115 CNAL-VLYTPPVYSEHERMKMDPT-KILVHVVVDPLLSNILRPHQREGVRFMYDCV-EGK 171
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L+WTLLRQ P I K +IV+PSSL NW EF K
Sbjct: 172 KGNFNGCIMADEMGLGKTLQCVTLVWTLLRQSCECKPTITKAIIVSPSSLVKNWEKEFTK 231
Query: 454 WL-GLTRMCPYHVNQKN---KA-EDY---VYSRV-SPVLIISYEMLIRAYQTIV-DTEFD 503
WL G K KA E + +R+ +PVL+ISYE R Y I+ E
Sbjct: 232 WLHGRMHCLAMEGGSKEDTIKALEQFSMNTSTRLGTPVLLISYETF-RIYANILCQNEVG 290
Query: 504 LLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLR 563
++ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+
Sbjct: 291 MVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAA 350
Query: 564 EFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETL 623
+F++NFE PIL+ ++ +S++ ++ ++ +L I+RRT+ + L K E +
Sbjct: 351 DFKRNFENPILKGQNTDSSDKERERALEKTQELIGLVNQCIIRRTNQILTKYLPVKFEMV 410
Query: 624 LVCRATPLQQSLYL---------RCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDM 674
+ R T +Q Y R + + +AS + +T L+K+C+HP L+ + +
Sbjct: 411 ICVRLTSVQLEFYTNFLKSDKVRRSLADCNEKASLTALADIT-TLKKLCSHPDLIYEKML 469
Query: 675 MEEEG 679
++G
Sbjct: 470 ARDKG 474
Score = 119 (46.9 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 37/93 (39%), Positives = 48/93 (51%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKN---KA-EDY---VYSRV-SPV 242
I + +IV+PSSL NW EF KWL G K KA E + +R+ +PV
Sbjct: 210 ITKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTIKALEQFSMNTSTRLGTPV 269
Query: 243 LIISYEMLIRAYQTIV-DTEFDLLICDEKSLLK 274
L+ISYE R Y I+ E ++ICDE LK
Sbjct: 270 LLISYETF-RIYANILCQNEVGMVICDEGHRLK 301
Score = 52 (23.4 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 317 CNQINSHLSVTH--ALRKICNHPGLVQQPDVMEEEG 350
CN+ S ++ L+K+C+HP L+ + + ++G
Sbjct: 439 CNEKASLTALADITTLKKLCSHPDLIYEKMLARDKG 474
Score = 40 (19.1 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 158 VKKS--RLSLHAKTEVNPLILPKPIVDHQEKNRRSYILRVLI-VTPSSLTSN 206
V++S R +LH N L+L P V + + + ++L+ V L SN
Sbjct: 100 VRRSIVRRALHDPQACNALVLYTPPVYSEHERMKMDPTKILVHVVVDPLLSN 151
Score = 38 (18.4 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 305 RPLEESTAETLQ------CNQINSHLSVTHALRKICNHPGLVQQP 343
+P +E T LQ C Q L ALR N G + P
Sbjct: 16 QPNQEFTPPLLQKKNKRTCQQEQEQLQCQFALRDATNSNGSIPLP 60
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 147/363 (40%), Positives = 207/363 (57%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +PS K LV V VD LS +L+PHQR+GV F+YE V
Sbjct: 118 CNALVLFHPPAYTEHE-RMGMDPS-KVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKR 175
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L+WTLLRQGP P I K ++V+PSSL NW EF K
Sbjct: 176 G-NFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTK 234
Query: 454 WLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVLIISYEMLIRAYQTIV-DTEFDL 504
WL +C P K E + SR+ +PVL+ISYE R Y I+ E +
Sbjct: 235 WLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVLLISYETF-RIYAEILCKYEVGM 293
Query: 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLRE 564
+ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E++ L +F NP +LG+
Sbjct: 294 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAV 353
Query: 565 FRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624
F++NFE IL ++ +ST+A++ ++ +L I+RRT+ + L K E ++
Sbjct: 354 FKRNFESAILRGQNTDSTDAERQRAIAKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVI 413
Query: 625 VCRATPLQQSLYLRCVEYWDARAS-RD--SHLSVTH-----ALRKICNHPGLVQQPDMME 676
+ T +Q LY ++ R S D S+T L+KIC+HP L+ +
Sbjct: 414 CAKLTSIQLELYTNFLKSDQVRRSLADCKEKASLTALADITTLKKICSHPNLIYEKITAR 473
Query: 677 EEG 679
++G
Sbjct: 474 DKG 476
Score = 123 (48.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 36/92 (39%), Positives = 48/92 (52%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVL 243
I + ++V+PSSL NW EF KWL +C P K E + SR+ +PVL
Sbjct: 213 INKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVL 272
Query: 244 IISYEMLIRAYQTIV-DTEFDLLICDEKSLLK 274
+ISYE R Y I+ E ++ICDE LK
Sbjct: 273 LISYETF-RIYAEILCKYEVGMVICDEGHRLK 303
Score = 54 (24.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 307 LEESTAETLQCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEG 350
+ S A+ + + + +T L+KIC+HP L+ + ++G
Sbjct: 434 VRRSLADCKEKASLTALADIT-TLKKICSHPNLIYEKITARDKG 476
>UNIPROTKB|B4NXB8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7245 "Drosophila yakuba" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CM000157
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872
EMBL:FJ219212 RefSeq:XP_002087763.1 STRING:B4NXB8 GeneID:6526655
KEGG:dya:Dyak_GE14966 FlyBase:FBgn0232556 Uniprot:B4NXB8
Length = 784
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 146/363 (40%), Positives = 206/363 (56%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +P+ K LV V VD LS +L+PHQR+GV F+YE V
Sbjct: 118 CNALVLFNPPAYTEHE-RMGMDPT-KVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKR 175
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L+WTLLRQGP P I K ++V+PSSL NW EF K
Sbjct: 176 G-NFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTK 234
Query: 454 WLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVLIISYEMLIRAYQTIV-DTEFDL 504
WL +C P K E + SR+ +PVL+ISYE R Y I+ E +
Sbjct: 235 WLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVLLISYETF-RIYAEILCKYEVGM 293
Query: 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLRE 564
+ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E++ L +F NP +LG+
Sbjct: 294 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAV 353
Query: 565 FRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624
F++NFE IL ++ +STE ++ ++ +L I+RRT+ + L K E ++
Sbjct: 354 FKRNFESAILRGQNTDSTEGERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVI 413
Query: 625 VCRATPLQQSLYLRCVEYWDARASR---DSHLSVTH-----ALRKICNHPGLVQQPDMME 676
+ T +Q LY ++ R S + S+T L+KIC+HP L+ +
Sbjct: 414 CAKLTSIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKITAR 473
Query: 677 EEG 679
E+G
Sbjct: 474 EKG 476
Score = 123 (48.4 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 36/92 (39%), Positives = 48/92 (52%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVL 243
I + ++V+PSSL NW EF KWL +C P K E + SR+ +PVL
Sbjct: 213 INKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKENTIRALEQFSMTSSRLGTPVL 272
Query: 244 IISYEMLIRAYQTIV-DTEFDLLICDEKSLLK 274
+ISYE R Y I+ E ++ICDE LK
Sbjct: 273 LISYETF-RIYAEILCKYEVGMVICDEGHRLK 303
Score = 56 (24.8 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 317 CNQINSHLSVTH--ALRKICNHPGLVQQPDVMEEEG 350
CN+ S ++ L+KIC+HP L+ + E+G
Sbjct: 441 CNEKASLTALADITTLKKICSHPDLIYEKITAREKG 476
>POMBASE|SPAC22F3.03c [details] [associations]
symbol:rdh54 "ATP-dependent DNA helicase Rdh54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC22F3.03c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007131 KO:K10877 EMBL:AY293737 PIR:S62418
PIR:T38188 RefSeq:NP_593038.2 ProteinModelPortal:Q09772
IntAct:Q09772 STRING:Q09772 EnsemblFungi:SPAC22F3.03c.1
GeneID:2541798 KEGG:spo:SPAC22F3.03c OMA:NTENTRT OrthoDB:EOG4CVKG1
NextBio:20802886 Uniprot:Q09772
Length = 811
Score = 545 (196.9 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60
Identities = 121/309 (39%), Positives = 179/309 (57%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
VDV +D FLS+ L HQR+GVSFLY+ + + AILADEMGLGKTLQ I ++WTL
Sbjct: 193 VDVVIDPFLSKHLYSHQREGVSFLYDCLLGMEGKCGYSAILADEMGLGKTLQTITVVWTL 252
Query: 422 LRQGPYG--MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV 479
L+Q Y I ++V P +L NW +EF WLG R+ Y +++ ++
Sbjct: 253 LKQSYYANRSSTINNAMVVAPVTLLKNWENEFYNWLGHERIHVYIARCAEDFQEFTSNKT 312
Query: 480 SPVLIISYEML---IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLS 536
++I YE + +R Y +D DLLICDE HRLK+ S+ + + L RKR+LL+
Sbjct: 313 YSIIITGYETVCTYLRNYGCGID--IDLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLT 370
Query: 537 GTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQL 596
GTPLQNDL E+F + +F PG LG+ F+ +E PIL SRS N++ SLG R +L
Sbjct: 371 GTPLQNDLSEYFSMVNFIIPGSLGTPNSFKAQYERPILRSRSMNASSRDISLGAARLQRL 430
Query: 597 AKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSH-LSV 655
+ T+ F LRR +++ A L + + +L + T Q+++Y ++ + + + + L +
Sbjct: 431 FEFTSNFTLRRKANILAKHLPPRTDIVLFIKPTHQQENVYGHVLDGFKSSVDQKGYYLKI 490
Query: 656 THALRKICN 664
L KICN
Sbjct: 491 LTRLSKICN 499
Score = 133 (51.9 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 32/97 (32%), Positives = 48/97 (49%)
Query: 187 NRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIIS 246
NR S I ++V P +L NW +EF WLG R+ Y +++ ++ ++I
Sbjct: 260 NRSSTINNAMVVAPVTLLKNWENEFYNWLGHERIHVYIARCAEDFQEFTSNKTYSIIITG 319
Query: 247 YEML---IRAYQTIVDTEFDLLICDEKSLLKPPSGNS 280
YE + +R Y +D DLLICDE LK S +
Sbjct: 320 YETVCTYLRNYGCGID--IDLLICDEAHRLKSMSSQT 354
Score = 100 (40.3 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 25 DSTLSKENHNYVYPEPGGT--EVSEAQNSNHATS---VTRI--FNVVYGKPSAKKHKSWE 77
+ST+ ++ NY E T EVSE N + S + +I +NVV+ K + KKHK+WE
Sbjct: 13 ESTIKHQSTNYTKTETATTSHEVSENANEHKGKSNIDINKIAYYNVVWRKITMKKHKTWE 72
Query: 78 QDGVL 82
DG L
Sbjct: 73 GDGFL 77
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 146/364 (40%), Positives = 204/364 (56%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +PS K V V VD LS VL+PHQR+GV F+YE V
Sbjct: 111 CNALVLYVPPAYTEHE-RMSMDPS-KVQVHVVVDPILSNVLRPHQREGVRFMYECVEGKR 168
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L WTLLRQ P P I K +IV+PSSL NW EF K
Sbjct: 169 G-NFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIIVSPSSLVKNWEKEFTK 227
Query: 454 WL-GLTRMCPYHVNQKNKA----EDYVYSRVS----PVLIISYEMLIRAYQTIV-DTEFD 503
WL G K E + + + PVL+ISYE R Y I+ TE
Sbjct: 228 WLHGRMHCLAMEGGSKEDTTRALEQFAMNTATRCGTPVLLISYETF-RLYAHILCKTEVG 286
Query: 504 LLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLR 563
++ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+
Sbjct: 287 MVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAA 346
Query: 564 EFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETL 623
+F++NFE IL ++ +ST+A++ ++ +L I+RRT+ + L K E +
Sbjct: 347 DFKRNFENSILRGQNADSTDAERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMV 406
Query: 624 LVCRATPLQQSLYLRCVEYWDARASR---DSHLSVTH-----ALRKICNHPGLVQQPDMM 675
+ + TP+Q +Y ++ R S + S+T L+K+CNHP L+ +
Sbjct: 407 VCVKLTPVQLQIYTNFLKSDQVRRSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAA 466
Query: 676 EEEG 679
+E+G
Sbjct: 467 KEKG 470
Score = 119 (46.9 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 36/101 (35%), Positives = 48/101 (47%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKA----EDYVYSR 238
Q + + I + +IV+PSSL NW EF KWL G K E + +
Sbjct: 198 QSPDCKPTISKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRALEQFAMNT 257
Query: 239 VS----PVLIISYEMLIRAYQTIV-DTEFDLLICDEKSLLK 274
+ PVL+ISYE R Y I+ TE ++ICDE LK
Sbjct: 258 ATRCGTPVLLISYETF-RLYAHILCKTEVGMVICDEGHRLK 297
Score = 60 (26.2 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 317 CNQINSHLSVTH--ALRKICNHPGLVQQPDVMEEEG 350
CN+ S ++ L+K+CNHP L+ + +E+G
Sbjct: 435 CNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKG 470
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 145/363 (39%), Positives = 206/363 (56%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +P+ K LV V VD LS +L+PHQR+GV F+YE V
Sbjct: 118 CNALVLFHPPAYTEHE-RMGMDPT-KVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKR 175
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L+WTLLRQGP P I K ++V+PSSL NW EF K
Sbjct: 176 G-NFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTK 234
Query: 454 WLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVLIISYEMLIRAYQTIV-DTEFDL 504
WL +C P K E + +R+ +PVL+ISYE R Y I+ E +
Sbjct: 235 WLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLISYETF-RIYAEILCKYEVGM 293
Query: 505 LICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLRE 564
+ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E++ L +F NP +LG+
Sbjct: 294 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAV 353
Query: 565 FRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLL 624
F++NFE IL ++ +STE ++ ++ +L I+RRT+ + L K E ++
Sbjct: 354 FKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVI 413
Query: 625 VCRATPLQQSLYLRCVEYWDARASR---DSHLSVTH-----ALRKICNHPGLVQQPDMME 676
+ T +Q LY ++ R S + S+T L+KIC+HP L+ +
Sbjct: 414 CAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTAR 473
Query: 677 EEG 679
E+G
Sbjct: 474 EKG 476
Score = 120 (47.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 35/92 (38%), Positives = 48/92 (52%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKNKA----EDY--VYSRV-SPVL 243
I + ++V+PSSL NW EF KWL +C P K E + +R+ +PVL
Sbjct: 213 INKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVL 272
Query: 244 IISYEMLIRAYQTIV-DTEFDLLICDEKSLLK 274
+ISYE R Y I+ E ++ICDE LK
Sbjct: 273 LISYETF-RIYAEILCKYEVGMVICDEGHRLK 303
Score = 55 (24.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 317 CNQINSHLSVTH--ALRKICNHPGLVQQPDVMEEEG 350
CN+ S ++ L+KIC+HP L+ + E+G
Sbjct: 441 CNEKASLTALADITTLKKICSHPDLIYEKLTAREKG 476
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 145/364 (39%), Positives = 206/364 (56%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P+ + E + PS LV V VD LS +L+PHQR+GV F+YE V
Sbjct: 114 CNALVLYHAPNYTDHE-RMSMEPSSV-LVHVVVDPLLSNILRPHQREGVRFMYECVEGKR 171
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+AL+WTLL+Q P I K +IV+PSSL NW EF K
Sbjct: 172 G-NFNGCIMADEMGLGKTLQCVALVWTLLKQSAECKPTINKCIIVSPSSLVKNWEKEFTK 230
Query: 454 WL-GLTRMCPYHVNQKNKA----EDY---VYSRV-SPVLIISYEMLIRAYQTIV-DTEFD 503
WL G K E + +R+ +PVL+ISYE R Y I+ E
Sbjct: 231 WLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVLLISYETF-RIYAEILCKYEVG 289
Query: 504 LLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLR 563
++ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+
Sbjct: 290 MVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAA 349
Query: 564 EFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETL 623
+F++NFE IL ++ +ST+ ++ ++ +L K I+RRT+ + L K E +
Sbjct: 350 DFKRNFENCILRGQNADSTDKERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMV 409
Query: 624 LVCRATPLQQSLYLRCVEYWDARAS-RD--SHLSVTH-----ALRKICNHPGLVQQPDMM 675
+ + TP+Q LY ++ R S D S+T L+K+C+HP L+ +
Sbjct: 410 ICAKLTPIQLQLYTNFLKSDQVRRSLADCKEKASLTALADITTLKKLCSHPNLICEKIAA 469
Query: 676 EEEG 679
EE+G
Sbjct: 470 EEKG 473
>TAIR|locus:2094083 [details] [associations]
symbol:RAD54 "homolog of RAD54" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0010332 "response to gamma
radiation" evidence=IEP;RCA] [GO:0006302 "double-strand break
repair" evidence=RCA] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0007140 "male meiosis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0010332 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0045003
HOGENOM:HOG000204521 KO:K10875 EMBL:DQ912973 EMBL:AB250666
IPI:IPI00531645 RefSeq:NP_188552.3 UniGene:At.53386 SMR:Q0PCS3
IntAct:Q0PCS3 STRING:Q0PCS3 EnsemblPlants:AT3G19210.1 GeneID:821455
KEGG:ath:AT3G19210 TAIR:At3g19210 InParanoid:Q0PCS3 OMA:SDTHDRF
ProtClustDB:CLSN2693236 Genevestigator:Q0PCS3 Uniprot:Q0PCS3
Length = 910
Score = 597 (215.2 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 141/342 (41%), Positives = 200/342 (58%)
Query: 343 PDVMEEEGQWKHNPSGKPLVD-VTVDGFLSRVLKPHQRQGVSFLYERVCDL-ASLDLEGA 400
PD+ E W+ G V + V L + L+PHQR+GV F+++ V L S ++ G
Sbjct: 149 PDI-EPLVLWQSEEDGMSNVTTIMVHSVLVKFLRPHQREGVQFMFDCVSGLHGSANINGC 207
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLG---- 456
ILAD+MGLGKTLQ I L++TLL QG G P+++K +IVTP+SL SNW E KKW+G
Sbjct: 208 ILADDMGLGKTLQSITLLYTLLCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQ 267
Query: 457 LTRMCPYHVNQKNKAED-YVYSRVS-PVLIISYEMLIRAYQTIVDTEF-DLLICDEGHRL 513
L +C + D + R + VLIISYE +E DLLICDE HRL
Sbjct: 268 LIALCESTRDDVLSGIDSFTRPRSALQVLIISYETFRMHSSKFCQSESCDLLICDEAHRL 327
Query: 514 KNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPI 573
KN ++ + L ++R+LLSGTP+QNDL+EFF + +F NPG LG FR +E PI
Sbjct: 328 KNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPI 387
Query: 574 LESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQ 633
+ R P +TE +K+L RS++L+ + FILRRT+ + ++ L K ++ C+ T LQ
Sbjct: 388 ICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPKIIEVVCCKMTTLQS 447
Query: 634 SLYLRCVEYWDA-RASRDSH-----LSVTHALRKICNHPGLV 669
+LY + + RA D+ L+ AL+K+CNHP L+
Sbjct: 448 TLYNHFISSKNLKRALADNAKQTKVLAYITALKKLCNHPKLI 489
Score = 124 (48.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 42/125 (33%), Positives = 57/125 (45%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLG----LTRMCPYHVNQKNKAED-YVYSRVS-PVLII 245
+ + +IVTP+SL SNW E KKW+G L +C + D + R + VLII
Sbjct: 239 VKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQVLII 298
Query: 246 SYEMLIRAYQTIVDTEF-DLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCK 304
SYE +E DLLICDE LK + + + SL K + P +
Sbjct: 299 SYETFRMHSSKFCQSESCDLLICDEAHRLK---NDQTLTNRALASLTCKRRVLLSGTPMQ 355
Query: 305 RPLEE 309
LEE
Sbjct: 356 NDLEE 360
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 298 IGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGLV 340
I S KR L ++ +T ++ ++++ AL+K+CNHP L+
Sbjct: 454 ISSKNLKRALADNAKQT----KVLAYIT---ALKKLCNHPKLI 489
Score = 37 (18.1 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 288 PSLPRKSDSGIGSLPCKRPLE 308
P LPR G+ C++P +
Sbjct: 70 PLLPRVLSVSDGAAVCRKPFK 90
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 145/364 (39%), Positives = 202/364 (55%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P E E + +PS K V V VD LS VL+PHQR+GV F+YE V
Sbjct: 111 CNALVLYTPPAYTEHE-RMSLDPS-KLQVHVVVDPILSNVLRPHQREGVRFMYECVEGKR 168
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+ L WTLLRQ P P I K ++V+PSSL NW EF K
Sbjct: 169 G-NFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIVVSPSSLVKNWEKEFTK 227
Query: 454 WL-GLTRMCPYHVNQKNKA----EDYVYSRVS----PVLIISYEMLIRAYQTIV-DTEFD 503
WL G K E + + + PVL+ISYE R Y I+ TE
Sbjct: 228 WLHGRMHCLAMEGGSKEDTTRTLEQFAMNTATRCGTPVLLISYETF-RLYSHILCKTEVG 286
Query: 504 LLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLR 563
++ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+
Sbjct: 287 MVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTGS 346
Query: 564 EFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETL 623
+F++NFE IL ++ +ST+A++ ++ +L I+RRT+ + L K E +
Sbjct: 347 DFKRNFENAILRGQNADSTDAERERALEKTQELVGLVNQCIIRRTNQILTKYLPVKFEMV 406
Query: 624 LVCRATPLQQSLYLRCVEYWDARAS-RD-------SHLSVTHALRKICNHPGLVQQPDMM 675
+ + T +Q LY ++ R S D + L+ L+K+CNHP L+ +
Sbjct: 407 VCAKLTAVQLQLYTNFLKSDQVRRSLADCTDKTTLTALADITTLKKLCNHPDLIYEKIAA 466
Query: 676 EEEG 679
E+G
Sbjct: 467 REKG 470
Score = 119 (46.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 35/101 (34%), Positives = 48/101 (47%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKA----EDYVYSR 238
Q + + I + ++V+PSSL NW EF KWL G K E + +
Sbjct: 198 QSPDCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEDTTRTLEQFAMNT 257
Query: 239 VS----PVLIISYEMLIRAYQTIV-DTEFDLLICDEKSLLK 274
+ PVL+ISYE R Y I+ TE ++ICDE LK
Sbjct: 258 ATRCGTPVLLISYETF-RLYSHILCKTEVGMVICDEGHRLK 297
Score = 59 (25.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 307 LEESTAETLQCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEG 350
+ S A+ + + +T L+K+CNHP L+ + E+G
Sbjct: 428 VRRSLADCTDKTTLTALADIT-TLKKLCNHPDLIYEKIAAREKG 470
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 144/364 (39%), Positives = 205/364 (56%)
Query: 334 CNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLA 393
CN L P+ + E + PS LV V VD LS +L+PHQR+GV F+YE V
Sbjct: 114 CNALVLYHAPNYTDHE-RMSMEPSSV-LVHVVVDPLLSNILRPHQREGVRFMYECVEGKR 171
Query: 394 SLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
+ G I+ADEMGLGKTLQC+AL+WTLL+Q P I K +IV+PSSL NW EF K
Sbjct: 172 G-NFNGCIMADEMGLGKTLQCVALVWTLLKQSAECKPTINKCIIVSPSSLVKNWEKEFTK 230
Query: 454 WL-GLTRMCPYHVNQKNKA----EDY---VYSRV-SPVLIISYEMLIRAYQTIV-DTEFD 503
WL G K E + +R+ +PVL+ISYE R Y I+ E
Sbjct: 231 WLHGRMHCLAMEGGSKENTVRALEQFSMNASTRLGTPVLLISYETF-RIYAEILCKYEVG 289
Query: 504 LLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLR 563
++ICDEGHRLKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+
Sbjct: 290 MVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAA 349
Query: 564 EFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETL 623
+F++NFE IL ++ +ST+ ++ ++ +L K I+RRT+ + L K E +
Sbjct: 350 DFKRNFENCILRGQNADSTDKERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMV 409
Query: 624 LVCRATPLQQSLYLRCVEYWDARAS-RD--SHLSVTH-----ALRKICNHPGLVQQPDMM 675
+ + TP+Q LY ++ R S D S+T L+K+C+HP L+ +
Sbjct: 410 ICAKLTPIQLQLYTNFLKSDQVRRSLADCKEKASLTALADITTLKKLCSHPNLICEKIAA 469
Query: 676 EEEG 679
E+G
Sbjct: 470 GEKG 473
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 140/355 (39%), Positives = 195/355 (54%)
Query: 343 PDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAIL 402
P V E + +PS K V V VD LS VL+PHQR+GV F+YE V G I+
Sbjct: 119 PPVYTEHERMSLDPS-KLQVHVVVDPLLSNVLRPHQREGVRFMYECVEGKRG-SFNGCIM 176
Query: 403 ADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTRMC 461
ADEMGLGKTLQC+ L WTLLRQ P I K ++V+PSSL NW EF KWL G
Sbjct: 177 ADEMGLGKTLQCVTLTWTLLRQSADCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCL 236
Query: 462 PYHVNQKNKA----EDYVYSRVS----PVLIISYEMLIRAYQTIV-DTEFDLLICDEGHR 512
K + E + + + PVL+ISYE R Y I+ TE ++ICDEGHR
Sbjct: 237 AMEGGSKEETTRTLEQFAMNTSTRCGTPVLLISYETF-RLYAHILCKTEVGMVICDEGHR 295
Query: 513 LKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEP 572
LKN + Y+ + GL ++R+LLSGTP+QNDL E+F L +F NP +LG+ +F++NFE
Sbjct: 296 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENA 355
Query: 573 ILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQ 632
IL ++ +ST+ ++ L++ +L I+RRT+ + L K E ++ + T +Q
Sbjct: 356 ILRGQNADSTDTERERALLKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQ 415
Query: 633 QSLYLR-------CVEYWDARASRD-SHLSVTHALRKICNHPGLVQQPDMMEEEG 679
+Y C D + LS L+K+CNHP L+ + E+G
Sbjct: 416 LQIYTNFLKSDQVCRSLADCNEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKG 470
Score = 118 (46.6 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 35/101 (34%), Positives = 49/101 (48%)
Query: 184 QEKNRRSYILRVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKA----EDYVYSR 238
Q + + I + ++V+PSSL NW EF KWL G K + E + +
Sbjct: 198 QSADCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEETTRTLEQFAMNT 257
Query: 239 VS----PVLIISYEMLIRAYQTIV-DTEFDLLICDEKSLLK 274
+ PVL+ISYE R Y I+ TE ++ICDE LK
Sbjct: 258 STRCGTPVLLISYETF-RLYAHILCKTEVGMVICDEGHRLK 297
Score = 63 (27.2 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 317 CNQINS--HLSVTHALRKICNHPGLVQQPDVMEEEG 350
CN+ S LS L+K+CNHP L+ + E+G
Sbjct: 435 CNEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKG 470
>DICTYBASE|DDB_G0282997 [details] [associations]
symbol:rad54 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282997 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281
EMBL:AAFI02000049 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K10875 RefSeq:XP_639303.1
ProteinModelPortal:Q54RP8 STRING:Q54RP8 EnsemblProtists:DDB0232369
GeneID:8623874 KEGG:ddi:DDB_G0282997 InParanoid:Q54RP8 OMA:ERPILAG
ProtClustDB:CLSZ2728985 Uniprot:Q54RP8
Length = 931
Score = 590 (212.7 bits), Expect = 8.7e-57, P = 8.7e-57
Identities = 131/332 (39%), Positives = 200/332 (60%)
Query: 357 SGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDL-ASLDLEGAILADEMGLGKTLQCI 415
+G+ + VD LS+ L+PHQR+GV F+++ + G ILAD+MGLGK++Q I
Sbjct: 266 TGENRIHCVVDPILSQKLRPHQREGVQFMFDCLLGFRGGFKGNGCILADDMGLGKSIQAI 325
Query: 416 ALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLG--LTRMCPYHVNQKNKAE- 472
++WTLL+QGP G +K +IV P +L NW E KKWLG + + + +A+
Sbjct: 326 TILWTLLKQGPKGESTAKKAVIVAPCTLVGNWGQELKKWLGDGVNTVAIGESTKTGRAKL 385
Query: 473 -DYVYSRVSPVLIISYEMLIRAY-QTIVD-TEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
+ + + VLIISY+ L R Y + I T L+ICDEGHRLKN + K + ++ +
Sbjct: 386 TELEFGKAD-VLIISYDQL-RIYCEDICKITSIGLVICDEGHRLKNAEIKTTKAVSMIPT 443
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
+R++LSGTP+QNDL EF+ + +F NPGVL ++ F+ ++ PI+ SR+P++++ +K +G
Sbjct: 444 ARRVILSGTPIQNDLTEFYAMVNFVNPGVLKNVATFKNVYDAPIVASRNPDASDEEKEIG 503
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCV-EYWD-ARA 647
RS +L++ T+ FILRRT+ V L K E ++ C+ TPLQ S+Y + E D A A
Sbjct: 504 RQRSLELSRLTSQFILRRTAFVNTQYLPPKVEYVIFCKLTPLQLSIYKHLIKEAKDSAFA 563
Query: 648 SRDSHLSVTHALRKICNHPGLVQQPDMMEEEG 679
S L + L+K+ N LV PD + G
Sbjct: 564 STTGALPLITTLKKLSNCAELVYTPDKETDVG 595
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 553 (199.7 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 126/328 (38%), Positives = 193/328 (58%)
Query: 364 VTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423
+ VD L++ L+ HQR+GV F++E + ++ + G ILAD+MGLGKTLQ I +++TLL+
Sbjct: 123 IEVDPILAQYLREHQREGVQFVFECLMNIKDDKISGCILADDMGLGKTLQSITVLYTLLK 182
Query: 424 QGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQK----NKAEDYVYSR 478
QG + +R+ LI+ P+SL +NWNDE KW+ + + N K +K E + Y
Sbjct: 183 QGFHKKCAVRRCLILCPASLINNWNDEISKWIPNRCNVTCVNDNAKEKIVSKLEGFKYDI 242
Query: 479 VSPVLIISYEMLIRAYQTIVD-TEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSG 537
S VLI SYE R +D + D++ICDE HRLKN K+K Y + L +KR+LLSG
Sbjct: 243 QSTVLICSYECF-RINNEFLDKSSIDMIICDEAHRLKNDKTKTYTSIYNLTAKKRLLLSG 301
Query: 538 TPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLA 597
TP+QNDL EF+ L NP + + FRK F PIL R ++TE ++ + R ++L+
Sbjct: 302 TPIQNDLGEFYALISLCNPDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLTELS 361
Query: 598 KRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVT- 656
T FILRRT+++ + +L K + + P+Q++LY+ ++ + +++ V
Sbjct: 362 NITNKFILRRTNNLLSKVLPVKYLINIFIKLNPIQEALYVLFLKDKKILKNDNTNNKVNV 421
Query: 657 ----HALRKICNHPGLVQQPDMMEEEGQ 680
L KICNHP L+ D+ +E GQ
Sbjct: 422 LINIKKLEKICNHPLLLNVNDI-KEIGQ 448
Score = 138 (53.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 50/170 (29%), Positives = 76/170 (44%)
Query: 187 NRRSYILRVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQK----NKAEDYVYSRVSP 241
+++ + R LI+ P+SL +NWNDE KW+ + + N K +K E + Y S
Sbjct: 186 HKKCAVRRCLILCPASLINNWNDEISKWIPNRCNVTCVNDNAKEKIVSKLEGFKYDIQST 245
Query: 242 VLIISYEMLIRAYQTIVD-TEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGS 300
VLI SYE R +D + D++ICDE LK + + I +L K +
Sbjct: 246 VLICSYECF-RINNEFLDKSSIDMIICDEAHRLK---NDKTKTYTSIYNLTAKKRLLLSG 301
Query: 301 LPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGLV-QQPDVMEEE 349
P + L E A CN + RK +P L+ + D E+E
Sbjct: 302 TPIQNDLGEFYALISLCNP--DLFDDINLFRKKFANPILIGRDKDATEKE 349
>UNIPROTKB|Q8IAN4 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 553 (199.7 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 126/328 (38%), Positives = 193/328 (58%)
Query: 364 VTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423
+ VD L++ L+ HQR+GV F++E + ++ + G ILAD+MGLGKTLQ I +++TLL+
Sbjct: 123 IEVDPILAQYLREHQREGVQFVFECLMNIKDDKISGCILADDMGLGKTLQSITVLYTLLK 182
Query: 424 QGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQK----NKAEDYVYSR 478
QG + +R+ LI+ P+SL +NWNDE KW+ + + N K +K E + Y
Sbjct: 183 QGFHKKCAVRRCLILCPASLINNWNDEISKWIPNRCNVTCVNDNAKEKIVSKLEGFKYDI 242
Query: 479 VSPVLIISYEMLIRAYQTIVD-TEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSG 537
S VLI SYE R +D + D++ICDE HRLKN K+K Y + L +KR+LLSG
Sbjct: 243 QSTVLICSYECF-RINNEFLDKSSIDMIICDEAHRLKNDKTKTYTSIYNLTAKKRLLLSG 301
Query: 538 TPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLA 597
TP+QNDL EF+ L NP + + FRK F PIL R ++TE ++ + R ++L+
Sbjct: 302 TPIQNDLGEFYALISLCNPDLFDDINLFRKKFANPILIGRDKDATEKEQEIASERLTELS 361
Query: 598 KRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVT- 656
T FILRRT+++ + +L K + + P+Q++LY+ ++ + +++ V
Sbjct: 362 NITNKFILRRTNNLLSKVLPVKYLINIFIKLNPIQEALYVLFLKDKKILKNDNTNNKVNV 421
Query: 657 ----HALRKICNHPGLVQQPDMMEEEGQ 680
L KICNHP L+ D+ +E GQ
Sbjct: 422 LINIKKLEKICNHPLLLNVNDI-KEIGQ 448
Score = 138 (53.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 50/170 (29%), Positives = 76/170 (44%)
Query: 187 NRRSYILRVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQK----NKAEDYVYSRVSP 241
+++ + R LI+ P+SL +NWNDE KW+ + + N K +K E + Y S
Sbjct: 186 HKKCAVRRCLILCPASLINNWNDEISKWIPNRCNVTCVNDNAKEKIVSKLEGFKYDIQST 245
Query: 242 VLIISYEMLIRAYQTIVD-TEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGS 300
VLI SYE R +D + D++ICDE LK + + I +L K +
Sbjct: 246 VLICSYECF-RINNEFLDKSSIDMIICDEAHRLK---NDKTKTYTSIYNLTAKKRLLLSG 301
Query: 301 LPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGLV-QQPDVMEEE 349
P + L E A CN + RK +P L+ + D E+E
Sbjct: 302 TPIQNDLGEFYALISLCNP--DLFDDINLFRKKFANPILIGRDKDATEKE 349
>WB|WBGene00013792 [details] [associations]
symbol:Y116A8C.13 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0033554 "cellular response to stress" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0033554 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
GeneTree:ENSGT00700000105778 EMBL:AL117204 GeneID:190999
KEGG:cel:CELE_Y116A8C.13 CTD:190999 PIR:T31515
RefSeq:NP_001255913.1 ProteinModelPortal:Q9U2S8 SMR:Q9U2S8
PaxDb:Q9U2S8 EnsemblMetazoa:Y116A8C.13a UCSC:Y116A8C.13
WormBase:Y116A8C.13a HOGENOM:HOG000015986 InParanoid:Q9U2S8
OMA:KICNHPS NextBio:947616 ArrayExpress:Q9U2S8 Uniprot:Q9U2S8
Length = 833
Score = 417 (151.9 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 86/207 (41%), Positives = 125/207 (60%)
Query: 364 VTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEG--AILADEMGLGKTLQCIALIWTL 421
VTVD +R L+PHQ+ G+ F+++R+ + + G AILAD+MGLGK+LQ +A W L
Sbjct: 196 VTVDTRFARHLRPHQKSGIQFIFDRLRRGSGKNGGGGGAILADDMGLGKSLQTMAATWAL 255
Query: 422 LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS-RVS 480
L+ + LI+ PSSL +NW EF KW L R N Y + ++
Sbjct: 256 LKGSKTAQQLANSCLIIVPSSLVNNWKAEFDKWWRLMRFPAVIALTANDITTYQSTIKLM 315
Query: 481 PVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPL 540
P L+ISY++ R + + FD+++CDEGH+LKN KL + + L I +R++L+GTP+
Sbjct: 316 PYLVISYDLAQRHVEKLKIIRFDVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPM 375
Query: 541 QNDLQEFFYLNDFANPGVLGSLREFRK 567
QND +EF+ L DF P V GS+ EFRK
Sbjct: 376 QNDFEEFYSLLDFVRPSVFGSIVEFRK 402
Score = 132 (51.5 bits), Expect = 4.8e-14, Sum P(3) = 4.8e-14
Identities = 30/84 (35%), Positives = 43/84 (51%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS-RVSPVLIISYEMLIRAY 254
LI+ PSSL +NW EF KW L R N Y + ++ P L+ISY++ R
Sbjct: 270 LIIVPSSLVNNWKAEFDKWWRLMRFPAVIALTANDITTYQSTIKLMPYLVISYDLAQRHV 329
Query: 255 QTIVDTEFDLLICDEKSLLKPPSG 278
+ + FD+++CDE LK G
Sbjct: 330 EKLKIIRFDVMVCDEGHKLKNLDG 353
Score = 92 (37.4 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 50 NSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILKDTLGK-VI--DSKVKIL 106
N + + R F V+YGK S +KHK WE DG+L +LK + VI S +K L
Sbjct: 14 NDTPSAEIAR-FVVLYGKASTRKHKIWEGDGLLVCFTDSCLLKSEDERDVICRSSALKGL 72
Query: 107 DEIKPG 112
D+++ G
Sbjct: 73 DQLEDG 78
Score = 90 (36.7 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 592 RSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRD 650
R QL + +LRRT+ DV L K E +L C A+P+Q+ ++ +Y A
Sbjct: 407 RPEQLNELIDECMLRRTAADVDLKHLPEKHEYILFCAASPIQKHVHSEICDYMTGDA--- 463
Query: 651 SHLSVTHALRKICNHPGLV 669
LS+ R++ NHP L+
Sbjct: 464 --LSLIFFARQLANHPKLL 480
Score = 44 (20.5 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 284 DSGIPSLPRKSDSGIGSLPCKR-PLEESTAETLQCNQINSH-LSVTHALRKICNHPGLVQ 341
D + LP K + L C P+++ + C+ + LS+ R++ NHP L+
Sbjct: 426 DVDLKHLPEKHEY---ILFCAASPIQKHVHSEI-CDYMTGDALSLIFFARQLANHPKLLL 481
Query: 342 QP--DVMEEEGQWKHNP 356
+ E+ KH+P
Sbjct: 482 DNLREKTEKSKAHKHSP 498
>SGD|S000000277 [details] [associations]
symbol:RDH54 "DNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000727 "double-strand break repair via
break-induced replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0030491 "heteroduplex formation" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0045144 "meiotic sister chromatid segregation" evidence=IMP]
[GO:0015616 "DNA translocase activity" evidence=IDA] [GO:0032392
"DNA geometric change" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000000277 GO:GO:0005524
GO:GO:0005634 EMBL:BK006936 GO:GO:0004386 EMBL:X76294
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0007131 GO:GO:0045144 InterPro:IPR018838 Pfam:PF10382
GO:GO:0000727 KO:K10877 GO:GO:0015616 GO:GO:0032392
HOGENOM:HOG000204521 GO:GO:0030491 OrthoDB:EOG4CVKG1 EMBL:Z35942
PIR:S45466 RefSeq:NP_009629.6 RefSeq:NP_009633.3
ProteinModelPortal:P38086 SMR:P38086 DIP:DIP-792N IntAct:P38086
MINT:MINT-566887 STRING:P38086 PaxDb:P38086 PeptideAtlas:P38086
EnsemblFungi:YBR073W GeneID:852365 GeneID:852369 KEGG:sce:YBR073W
KEGG:sce:YBR077C CYGD:YBR073w GeneTree:ENSGT00700000105778
OMA:AMSRIHR NextBio:971140 Genevestigator:P38086 GermOnline:YBR073W
GO:GO:0003916 Uniprot:P38086
Length = 958
Score = 409 (149.0 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 97/261 (37%), Positives = 149/261 (57%)
Query: 428 GMPVI---RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE-------DYV-Y 476
G+P+ +K+L+V P +L NW EF KWL L+R+ ++ +N + +++
Sbjct: 379 GIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKV 438
Query: 477 SRVSPVLIISYEMLIRAYQTIVDTE--FDLLICDEGHRLKNGKSKLYELMTGLNIRKRIL 534
R VLII YE L+ + + + D+L+CDEGHRLKNG SK+ + L+IR+++L
Sbjct: 439 QRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLL 498
Query: 535 LSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL--GELR 592
L+GTP+QNDL EFF + DF NPG+LGS F++ F PI +R + ++ L GE R
Sbjct: 499 LTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEELLEKGEER 558
Query: 593 SSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCV---EYWD-ARAS 648
S ++ + T FILRRT+ + L K + +L C+ QQ L + + D + +
Sbjct: 559 SKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYS-QQILAFKDILQGARLDFGQLT 617
Query: 649 RDSHLSVTHALRKICNHPGLV 669
S L + L+K+CN PGLV
Sbjct: 618 FSSSLGLITLLKKVCNSPGLV 638
Score = 193 (73.0 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 45/122 (36%), Positives = 71/122 (58%)
Query: 396 DLEGAILADEMGLGKTLQCIALIWTLLRQGPY---------GMPVI---RKVLIVTPSSL 443
D+ G +LAD+MGLGKTL I LIWTL+RQ P+ G+P+ +K+L+V P +L
Sbjct: 338 DISGCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTL 397
Query: 444 TSNWNDEFKKWLGLTRMCPYHVNQKNKAE-DYVYSRVSPVLIISYEMLIRAYQTIVDTEF 502
NW EF KWL L+R+ ++ +N + D + R + +Y++LI Y+ ++
Sbjct: 398 IGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQVLIIGYEKLLSVSE 457
Query: 503 DL 504
+L
Sbjct: 458 EL 459
Score = 136 (52.9 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 62/260 (23%), Positives = 114/260 (43%)
Query: 157 PVKKSRLSLHAKTEVN--PLI--LPKPIVDHQEKNRRSYILRVLIVTPSSLT-SNWNDEF 211
P+ K++++++ K ++ P + KP ++ N + ++ P++ W+ +
Sbjct: 70 PISKAKVTVNLKRSISAGPTLNLAKKP--NNLSSNENTRYFTIMYRKPTTKKHKTWSGDG 127
Query: 212 KKWLGLT--RMCPYHVNQKNKAEDYVYSRVSPVLIIS-YEMLIRAYQTIVDTEFDLL--- 265
L + ++C Y N+A ++ S + P S +E L +A V +++L
Sbjct: 128 YATLKASSDKLCFY-----NEAGKFLGSSMLPSDSDSLFETLFKAGSNEVQLDYELKENA 182
Query: 266 -ICDEKSLLKPPSGN-SPGNDSGIPSLPR-KSDSGIGSLPCKRPLEESTAETLQC--NQI 320
I K L GN SP S ++P K+D G +P + +T + + Q
Sbjct: 183 EIRSAKEALSQNMGNPSPPTTSTTETVPSTKNDGGKYQMPLSQLFSLNTVKRFKSVTKQT 242
Query: 321 NSHLSVTHALRKICNHPGLVQQP--DVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQ 378
N H++ + N P DV + + N + VDV VD L + L+PHQ
Sbjct: 243 NEHMTTVPKTSQ--NSKAKKYYPVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQ 300
Query: 379 RQGVSFLYERVCDLASLDLE 398
R+GV F+Y+ + LA +E
Sbjct: 301 REGVKFMYDCLMGLARPTIE 320
Score = 117 (46.2 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE-DYV-------YSRVSPVLII 245
++L+V P +L NW EF KWL L+R+ ++ +N + D + R VLII
Sbjct: 388 KILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQVLII 447
Query: 246 SYEMLIRAYQTIVDTE--FDLLICDEKSLLK 274
YE L+ + + + D+L+CDE LK
Sbjct: 448 GYEKLLSVSEELEKNKHLIDMLVCDEGHRLK 478
Score = 94 (38.1 bits), Expect = 3.4e-40, Sum P(2) = 3.4e-40
Identities = 28/101 (27%), Positives = 48/101 (47%)
Query: 42 GTEVSEAQNSNHATSV--TRIFNVVYGKPSAKKHKSWEQDG--VLEISGTMAILKDTLGK 97
G ++ A+ N+ +S TR F ++Y KP+ KKHK+W DG L+ S + GK
Sbjct: 87 GPTLNLAKKPNNLSSNENTRYFTIMYRKPTTKKHKTWSGDGYATLKASSDKLCFYNEAGK 146
Query: 98 VIDSKVKILDE-------IKPGTSSLQSSPRLNASDNVQSS 131
+ S + D K G++ +Q L + ++S+
Sbjct: 147 FLGSSMLPSDSDSLFETLFKAGSNEVQLDYELKENAEIRSA 187
Score = 54 (24.1 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 321 NSHLSVTHALRKICNHPGLV 340
+S L + L+K+CN PGLV
Sbjct: 619 SSSLGLITLLKKVCNSPGLV 638
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 365 (133.5 bits), Expect = 7.0e-33, Sum P(2) = 7.0e-33
Identities = 91/251 (36%), Positives = 139/251 (55%)
Query: 368 GFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPY 427
G + L HQR+GV+FLY L G ILAD+MGLGKT+Q IA + G +
Sbjct: 74 GEMHAKLFQHQREGVAFLYR----LHREGRPGGILADDMGLGKTIQIIAFL-----SGMF 124
Query: 428 GMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV--YSRVSPVLII 485
+IR VL++ P++L S+W EF +W R+ +H K + + R + ++I
Sbjct: 125 DSELIRHVLLIMPTTLVSSWLAEFARWTPGLRVKEFHGTSKTERTRNLEKIQRKNGIVIT 184
Query: 486 SYEMLIRAYQTIV-----DTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPL 540
SY+MLI ++ + D +D +I DE H++K +K + + + + R+LL+GTPL
Sbjct: 185 SYQMLINNWKQLASCHGQDFVWDYIILDEAHKIKCPSNKTTKCVYAIPAKHRLLLTGTPL 244
Query: 541 QNDLQEFFYLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKR 599
QN+LQE + L DFA G +LG+ + FR +E PI +R ++T +K+LG S L
Sbjct: 245 QNNLQEMWSLFDFACQGSLLGTAKTFRMEYENPITRAREKDATVGEKALGLKISENLMTI 304
Query: 600 TAGFILRRTSD 610
+ LRRT D
Sbjct: 305 IKPYFLRRTKD 315
Score = 111 (44.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 35/125 (28%), Positives = 60/125 (48%)
Query: 192 ILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV--YSRVSPVLIISYEM 249
I VL++ P++L S+W EF +W R+ +H K + + R + ++I SY+M
Sbjct: 129 IRHVLLIMPTTLVSSWLAEFARWTPGLRVKEFHGTSKTERTRNLEKIQRKNGIVITSYQM 188
Query: 250 LIRAYQTIV-----DTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCK 304
LI ++ + D +D +I DE +K PS + IP+ R +G P +
Sbjct: 189 LINNWKQLASCHGQDFVWDYIILDEAHKIKCPSNKTTKCVYAIPAKHRLLLTGT---PLQ 245
Query: 305 RPLEE 309
L+E
Sbjct: 246 NNLQE 250
Score = 57 (25.1 bits), Expect = 7.0e-33, Sum P(2) = 7.0e-33
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 616 LNSKRETLLVCRATPLQQSLYLR--CVEYW-DARASRDSHLSVTHALRKICNHPGLV 669
L K + ++ P+Q+ +Y C+++ + + S L+ L+K+C+HP L+
Sbjct: 344 LTRKNDFVVWVYLAPVQEKIYRNFLCLDHVKEVLTTTRSPLAELTVLKKLCDHPRLL 400
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 380 (138.8 bits), Expect = 6.1e-32, P = 6.1e-32
Identities = 91/289 (31%), Positives = 153/289 (52%)
Query: 360 PLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIW 419
P++ V R+L+ HQR+GV F+Y +L + G IL D+MGLGKT+Q IA +
Sbjct: 127 PIIHVPAS-INCRLLE-HQREGVKFMY----NLYKNN-HGGILGDDMGLGKTIQTIAFLA 179
Query: 420 TLL-RQGPYGMPVIRK-----VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473
+ + G G + + VLI+ PSS+ NW EF +W ++ YH + ++ +
Sbjct: 180 AVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHGSNRDMILE 239
Query: 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRI 533
+ +R VL+ S++ + ++++I DE HRLKN KSKLYE + +KRI
Sbjct: 240 KLKARGVEVLVTSFDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRI 299
Query: 534 LLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593
L+GT +QN + E F L ++ PG LG+ FR ++EP+ + + E + + R
Sbjct: 300 GLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRK 359
Query: 594 SQLAKRTAGFILRRTSDVQAS-LLNSKRETLLVCRATPLQQSLYLRCVE 641
L ++LRRT + L+ K + ++ C+ + LQ+ +Y R ++
Sbjct: 360 QHLGSLLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQRMIQ 408
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 371 (135.7 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 110/316 (34%), Positives = 166/316 (52%)
Query: 315 LQCNQINSHLSVTHALRK-ICNHPGLVQQPDVMEEEGQWKH---NPSGKPLVDVTVDGFL 370
L+ Q+ L + L+K I L+Q+ D +EE + + N SG L G
Sbjct: 47 LELFQLAYQLQPSEKLKKRIQAIQDLIQREDEEDEEEEEEFVNVNNSGLKLYK----GLY 102
Query: 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMP 430
+ L HQ++GV+FLY D +G ILAD+MGLGKT+Q I+ + G Y
Sbjct: 103 DK-LYDHQKEGVAFLYSLYRD----GRKGGILADDMGLGKTIQVISFL-----SGMYDAE 152
Query: 431 VIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV--YSRVSPVLIISYE 488
+ L+V P+SL NW EF KW R+ +H + K + + R V+I +Y+
Sbjct: 153 LANHTLLVMPTSLIKNWVREFAKWTPGMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQ 212
Query: 489 MLIRAYQTIVDT---EF--DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQND 543
MLI Y+ + EF D +I DE H++K +K + + + R+LL+GTP+QN+
Sbjct: 213 MLINNYEQLGSNGHREFKWDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNN 272
Query: 544 LQEFFYLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQ-LAKRTA 601
L+E + L DFA G +LG+ + F+ +E PI +R ++T +K+LG LR SQ L
Sbjct: 273 LREMWALFDFACQGSLLGTSKTFKTEYENPITRAREKDATPGEKALG-LRISQNLTDIIK 331
Query: 602 GFILRRT-SDVQASLL 616
+ LRRT +DVQ L
Sbjct: 332 PYFLRRTKADVQQKKL 347
Score = 54 (24.1 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 611 VQASLLNSKRETLLVCRATPLQQSLYLRCV---EYWDARASRDSHLSVTHALRKICNHPG 667
V+ L K + ++ + +Q+ +Y + + + + + S L+ L+K+C+HP
Sbjct: 370 VEMPSLTRKNDLIVWTYLSSVQEDIYNKFISLDQIKELLTTTRSPLAELTVLKKLCDHPR 429
Query: 668 LVQQ 671
L+ Q
Sbjct: 430 LLSQ 433
Score = 43 (20.2 bits), Expect = 8.7e-30, Sum P(2) = 8.7e-30
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 618 SKRETLLVCRATP 630
SKRE+LL R+TP
Sbjct: 1087 SKRESLLKIRSTP 1099
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 356 (130.4 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 95/264 (35%), Positives = 141/264 (53%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
L L +Q++GV+FLY D G ILAD+MGLGKT+Q IA + G +
Sbjct: 70 LHNQLFEYQKEGVAFLYSLYRD----GRRGGILADDMGLGKTVQIIAFL-----SGMFDA 120
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP---VLIIS 486
++ VL++ P+SL S W EF KW R+ +H K++ + SR+ V+I +
Sbjct: 121 SLVNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNL-SRIQQRNGVIITT 179
Query: 487 YEMLIRAYQTIVDT---EF--DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541
Y+MLI +Q + EF D +I DE H++K +K + R RILL+GTP+Q
Sbjct: 180 YQMLINNWQQLSSLNGREFVWDYVILDEAHKIKTSSTKSAICARAIPARNRILLTGTPIQ 239
Query: 542 NDLQEFFYLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRT 600
N+LQE + L DFA G +LG+L+ F+ +E PI +R ++T +K+LG S L
Sbjct: 240 NNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAII 299
Query: 601 AGFILRRTSDVQASLLNSKRETLL 624
+ LRRT + +S E L
Sbjct: 300 KPYFLRRTKEEVQKKKSSNPEVRL 323
Score = 64 (27.6 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 616 LNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SRDSHLSVTHALRKICNHPGLV 669
L+ K + ++ R PLQ+ +Y + V + S L+ L+K+C+HP L+
Sbjct: 339 LSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 395
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 357 (130.7 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 91/250 (36%), Positives = 139/250 (55%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
L L HQ++GV+FLY D +G ILAD+MGLGKT+Q IA + G +
Sbjct: 114 LHNQLFEHQKEGVAFLYSLYRD----GRKGGILADDMGLGKTVQIIAFL-----SGMFDA 164
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP---VLIIS 486
++ VL++ P++L S W EF KW R+ +H + K++ + +R+ V+I +
Sbjct: 165 TLVSHVLLIMPTNLISTWIKEFVKWTPGMRVKTFHGSSKDERTRNL-NRIQQRNGVIITT 223
Query: 487 YEMLIRAYQTIVDT---EF--DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541
Y+MLI +Q + EF D +I DE H++K +K + R RILL+GTP+Q
Sbjct: 224 YQMLINNWQQLSSLNGQEFVWDYVILDEAHKIKTSSTKSAICARAVPARNRILLTGTPIQ 283
Query: 542 NDLQEFFYLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRT 600
N+LQE + L DFA G +LG+L+ F+ +E PI+ +R ++T +K+LG S L
Sbjct: 284 NNLQELWSLFDFACQGSLLGTLKTFKIEYENPIMRAREKDATPGEKALGLKISENLMAII 343
Query: 601 AGFILRRTSD 610
LRRT +
Sbjct: 344 KSHFLRRTKE 353
Score = 63 (27.2 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 616 LNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SRDSHLSVTHALRKICNHPGLV 669
L+ K + ++ R PLQ+ +Y + V + S L+ L+K+C+HP L+
Sbjct: 383 LSRKNDLIIWIRLRPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 439
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 318 (117.0 bits), Expect = 3.8e-30, Sum P(3) = 3.8e-30
Identities = 71/223 (31%), Positives = 118/223 (52%)
Query: 422 LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP 481
+++ P + LIV P S+ NW DE W G R+ H N+K+ V R
Sbjct: 198 MKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHGNRKDNELIRVKQRKCE 256
Query: 482 VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541
+ + +YE L + E+ +I DE HR+KN K+++ E+M L RI L+GT LQ
Sbjct: 257 IALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQ 316
Query: 542 NDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTA 601
N+++E + + D+A PG+LGS F+K F +P+ + +T+ + + G +LAK+ +
Sbjct: 317 NNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMS 376
Query: 602 GFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWD 644
G+ LRRT + L K + ++ C T Q+++Y +E D
Sbjct: 377 GWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETED 419
Score = 91 (37.1 bits), Expect = 3.8e-30, Sum P(3) = 3.8e-30
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424
++R L+ +QR+G FLY + G IL D+MGLGKT+Q I+ + +L +
Sbjct: 130 INRYLRDYQREGTRFLYGHY-----IHGGGCILGDDMGLGKTVQVISFLAAVLHK 179
Score = 42 (19.8 bits), Expect = 3.8e-30, Sum P(3) = 3.8e-30
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 652 HLSVTHALRKICNHPGLVQQPDMMEEE 678
+LS L+K+ NH L+Q +++
Sbjct: 456 YLSYLTVLQKVANHVALLQAASTSKQQ 482
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 353 (129.3 bits), Expect = 5.7e-30, Sum P(2) = 5.7e-30
Identities = 83/243 (34%), Positives = 138/243 (56%)
Query: 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVL 436
HQ++G++FLY L +G ILAD+MGLGKT+Q IA + G + ++ VL
Sbjct: 99 HQKEGIAFLYS----LYKNGRKGGILADDMGLGKTVQIIAFL-----SGMFDASLVNHVL 149
Query: 437 IVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP---VLIISYEMLIRA 493
++ P++L + W EF KW R+ +H + KN+ + +R+ V+I +Y+ML+
Sbjct: 150 LIMPTNLINTWVKEFAKWTPGMRVKTFHGSSKNERIRNL-TRIQQRNGVVITTYQMLLNN 208
Query: 494 YQTIVDTE-----FDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
+Q + +D +I DE H++K+ +K + R+LL+GTP+QN+LQE +
Sbjct: 209 WQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAVPASNRLLLTGTPIQNNLQELW 268
Query: 549 YLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRR 607
L DFA G +LG+L+ F+ +E PI+ +R ++T +K+LG S L + + LRR
Sbjct: 269 SLFDFACQGSLLGTLKTFKMEYENPIIRAREKDATPGEKALGFKMSENLMEIIKPYFLRR 328
Query: 608 TSD 610
T +
Sbjct: 329 TKE 331
Score = 62 (26.9 bits), Expect = 5.7e-30, Sum P(2) = 5.7e-30
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 616 LNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SRDSHLSVTHALRKICNHPGLV 669
L K + ++ R PLQ+ +Y + V + S L+ L+K+C+HP L+
Sbjct: 361 LTRKNDLIVWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 417
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 350 (128.3 bits), Expect = 7.9e-30, Sum P(2) = 7.9e-30
Identities = 92/263 (34%), Positives = 140/263 (53%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
L L +Q++G++FLY D G ILAD+MGLGKT+Q IA + G +
Sbjct: 92 LHNQLYEYQKEGIAFLYSLYRD----GRRGGILADDMGLGKTVQIIAFL-----SGMFDA 142
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV--YSRVSPVLIISY 487
++ VL++ P+SL S W EF KW R+ +H K++ + + + V+I +Y
Sbjct: 143 SLVNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNLCRIQQRNGVIITTY 202
Query: 488 EMLIRAYQTIVDT---EF--DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542
+MLI +Q + EF D +I DE H++K+ +K + RILL+GTP+QN
Sbjct: 203 QMLINNWQQLSSLNGQEFLWDYVILDEAHKIKSSSTKSAICARAIPASNRILLTGTPIQN 262
Query: 543 DLQEFFYLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTA 601
+LQE + L DFA G +LG+LR F+ +E PI +R ++T +K+LG S L
Sbjct: 263 NLQELWSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIK 322
Query: 602 GFILRRTSDVQASLLNSKRETLL 624
+ LRRT + +S E L
Sbjct: 323 PYFLRRTKEEVQKKKSSNPEVQL 345
Score = 64 (27.6 bits), Expect = 7.9e-30, Sum P(2) = 7.9e-30
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 616 LNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SRDSHLSVTHALRKICNHPGLV 669
L+ K + ++ R PLQ+ +Y + V + S L+ L+K+C+HP L+
Sbjct: 361 LSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 417
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 348 (127.6 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 90/253 (35%), Positives = 139/253 (54%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
L L HQ++G++FLY D +G ILAD+MGLGKT+Q IA + G +
Sbjct: 92 LHNQLFEHQKEGIAFLYSLYRD----GRKGGILADDMGLGKTVQIIAFL-----SGMFDA 142
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP---VLIIS 486
++ VL++ P++L + W EF KW R+ +H K++ + +R+ V+I +
Sbjct: 143 SLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNL-NRIQQRNGVIITT 201
Query: 487 YEMLIRAYQTIVD---TEF--DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541
Y+MLI +Q + EF D +I DE H++K +K + R+LL+GTP+Q
Sbjct: 202 YQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQ 261
Query: 542 NDLQEFFYLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRT 600
N+LQE + L DFA G +LG+L+ F+ +E PI +R ++T +K+LG S L
Sbjct: 262 NNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAII 321
Query: 601 AGFILRRTS-DVQ 612
+ LRRT DVQ
Sbjct: 322 KPYFLRRTKEDVQ 334
Score = 64 (27.6 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 616 LNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SRDSHLSVTHALRKICNHPGLV 669
L+ K + ++ R PLQ+ +Y + V + S L+ L+K+C+HP L+
Sbjct: 361 LSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 417
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 351 (128.6 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 82/243 (33%), Positives = 139/243 (57%)
Query: 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVL 436
HQ++G++FLY D +G ILAD+MGLGKT+Q IA + G + ++ VL
Sbjct: 100 HQKEGIAFLYSLYKD----GRKGGILADDMGLGKTVQIIAFL-----SGMFDASLVNHVL 150
Query: 437 IVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP---VLIISYEMLIRA 493
++ P++L + W +EF KW R+ +H + K++ + +R+ V+I +Y+ML+
Sbjct: 151 LIMPTNLINTWVNEFAKWTPGMRVKTFHGSSKSERTRSL-TRIQQRNGVVITTYQMLLNN 209
Query: 494 YQTIVDTE-----FDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
+Q + +D +I DE H++K+ +K + R+LL+GTP+QN+LQE +
Sbjct: 210 WQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQELW 269
Query: 549 YLNDFANPG-VLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRR 607
L DFA G +LG+L+ F+ +E PI+ +R ++T +K+LG S L + + LRR
Sbjct: 270 SLFDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEIIKPYFLRR 329
Query: 608 TSD 610
T +
Sbjct: 330 TKE 332
Score = 59 (25.8 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 616 LNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SRDSHLSVTHALRKICNHPGLV 669
L K + ++ R PLQ+ +Y + V + S L+ L+K+C+HP L+
Sbjct: 362 LARKNDLIVWIRLLPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 418
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 358 (131.1 bits), Expect = 4.3e-29, P = 4.3e-29
Identities = 102/319 (31%), Positives = 172/319 (53%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ +KP+Q +G+++LY+ L + G ILADEMGLGKTLQ I+L+ LR +
Sbjct: 318 INGTMKPYQLEGLNWLYQ----LYRFKING-ILADEMGLGKTLQTISLL-CYLR---FNK 368
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIIS 486
+ +K +I+ P S NW +E KKW + Y+ N+ + E + ++S VL+ +
Sbjct: 369 NIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLLHSDFD-VLLTT 427
Query: 487 YEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQE 546
YE++I+ + D ++ L+ DE HR+KN KS L + L R+L++GTPL N+L+E
Sbjct: 428 YEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKE 487
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + + EF F + S N + + + +L + + K F+LR
Sbjct: 488 LWSLLNFLMPKIFDNSEEFDNLFN---ISKISTNDNKQSEIITQLHT--ILKP---FMLR 539
Query: 607 RTS-DVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARA-SRDSHLSVTHALR 660
R +V+ SL KRE + + LQ+ LY + ++ +A S++ L++ LR
Sbjct: 540 RLKVEVEQSL-PPKREIYIFVGMSKLQKKLYSDILSKNIDVLNAMTGSKNQMLNILMQLR 598
Query: 661 KICNHPGL---VQQPDMME 676
K CNHP L +++P +E
Sbjct: 599 KCCNHPYLFDGIEEPPYIE 617
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 358 (131.1 bits), Expect = 4.3e-29, P = 4.3e-29
Identities = 102/319 (31%), Positives = 172/319 (53%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ +KP+Q +G+++LY+ L + G ILADEMGLGKTLQ I+L+ LR +
Sbjct: 318 INGTMKPYQLEGLNWLYQ----LYRFKING-ILADEMGLGKTLQTISLL-CYLR---FNK 368
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIIS 486
+ +K +I+ P S NW +E KKW + Y+ N+ + E + ++S VL+ +
Sbjct: 369 NIKKKSIIICPRSTLDNWYEEIKKWCTPMKAFKYYGNKDQRKELNRNLLHSDFD-VLLTT 427
Query: 487 YEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQE 546
YE++I+ + D ++ L+ DE HR+KN KS L + L R+L++GTPL N+L+E
Sbjct: 428 YEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKE 487
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + + EF F + S N + + + +L + + K F+LR
Sbjct: 488 LWSLLNFLMPKIFDNSEEFDNLFN---ISKISTNDNKQSEIITQLHT--ILKP---FMLR 539
Query: 607 RTS-DVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARA-SRDSHLSVTHALR 660
R +V+ SL KRE + + LQ+ LY + ++ +A S++ L++ LR
Sbjct: 540 RLKVEVEQSL-PPKREIYIFVGMSKLQKKLYSDILSKNIDVLNAMTGSKNQMLNILMQLR 598
Query: 661 KICNHPGL---VQQPDMME 676
K CNHP L +++P +E
Sbjct: 599 KCCNHPYLFDGIEEPPYIE 617
>UNIPROTKB|F1S4L1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:CU855584
Ensembl:ENSSSCT00000011974 Uniprot:F1S4L1
Length = 928
Score = 363 (132.8 bits), Expect = 4.8e-29, Sum P(2) = 4.8e-29
Identities = 95/292 (32%), Positives = 155/292 (53%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGPY- 427
++R L+ +QR+G FLY + G IL D+MGLGKT+Q I+ + +L ++G
Sbjct: 57 INRYLRDYQREGAQFLYGHF-----IQGRGCILGDDMGLGKTVQVISFLAAVLGKKGTRE 111
Query: 428 ----GMP--VIR--------KV-LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE 472
MP ++R K+ LIV P S+ NW DE W G R+ H N+K+
Sbjct: 112 DIENNMPEFLLRTKDGRREKKLFLIVAPLSVLYNWRDELDTW-GYFRVTILHGNKKDNEL 170
Query: 473 DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKR 532
V R + + +YE L + E+ +I DE HR+KN K+++ E+M L R
Sbjct: 171 IRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARITEVMKALKCNVR 230
Query: 533 ILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELR 592
I L+GT LQN+++E + + D+A PG+LGS F+K+F +P+ + +T+ + + G
Sbjct: 231 IGLTGTILQNNMKELWCVMDWAVPGLLGSEIHFKKHFSDPVEHGQRHTATKRELATGRKA 290
Query: 593 SSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWD 644
+LA + +G+ LRRT + L K + ++ C T Q+++Y +E D
Sbjct: 291 MQRLAIKMSGWFLRRTKILIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETED 342
Score = 38 (18.4 bits), Expect = 4.8e-29, Sum P(2) = 4.8e-29
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 652 HLSVTHALRKICNHPGLVQQPDMMEEE 678
+ S L+K+ NH L+Q +++
Sbjct: 379 YFSYLAVLQKVANHVALLQAASTSKQQ 405
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 355 (130.0 bits), Expect = 7.9e-29, P = 7.9e-29
Identities = 102/312 (32%), Positives = 160/312 (51%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LK +Q +G+ ++ L + L G ILADEMGLGKT+Q I+L+ L+ +
Sbjct: 501 LKEYQMKGLEWMVS----LYNNHLNG-ILADEMGLGKTIQSISLVTYLIEKKHEN----- 550
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEML 490
K LI+ P S +NW EF+KW ++ Y +Q+ + D Y VL+ +YE +
Sbjct: 551 KFLIIVPLSTITNWTLEFEKWAPSIKVIVYKGSQQQRRSLQPDIRYGNFQ-VLLTTYEYV 609
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE-LMTGLNIRKRILLSGTPLQNDLQEFFY 549
IR + + +I DEGHR+KN +SKL + L T + R++L+GTPLQN+L E +
Sbjct: 610 IRERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWA 669
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F PG+ S++ F F P + + E + L +L K F+LRR
Sbjct: 670 LLNFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEESLLVIRRLHKVLRPFLLRRLK 729
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLYLRCVEY------WDARASRDSHLSVTHA---L 659
DV+ L + K E +L C + LQ LY + +++ D ++ + + L
Sbjct: 730 KDVEKDLPD-KVEKVLKCNLSGLQYVLYQQMLKHNALFVGADVGGAKSGIKGLNNKIMQL 788
Query: 660 RKICNHPGLVQQ 671
RKICNHP + ++
Sbjct: 789 RKICNHPFVFEE 800
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 364 (133.2 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 112/345 (32%), Positives = 166/345 (48%)
Query: 335 NHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLAS 394
N ++ + E Q K N V V L L+ +Q G+ +L +
Sbjct: 875 NKDDMLNDAAALAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWLVT----MNE 930
Query: 395 LDLEGAILADEMGLGKTLQCIALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
L G ILADEMGLGKT+Q IAL+ L +G +G P LIV PSS+ NW EFKK
Sbjct: 931 RKLNG-ILADEMGLGKTIQTIALLAHLACAKGNWG-PH----LIVVPSSVMLNWEMEFKK 984
Query: 454 WLGLTRMCPYHVNQKN---KAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEG 510
W ++ Y+ +QK K + V I SY+++++ Q+ ++ LI DE
Sbjct: 985 WCPGFKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEA 1044
Query: 511 HRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFE 570
+KN KS+ ++L+ + +R+LL+GTPLQNDL E + L F P V S REF++ F
Sbjct: 1045 QNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFS 1104
Query: 571 EPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATP 630
P+ E E ++L K F+LRR + K E ++ CR +
Sbjct: 1105 NPMT-----GMIEGNMEYNETLITRLHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSN 1159
Query: 631 LQQSLYLRCVEYWDARASRDSH--LSVTHAL---RKICNHPGLVQ 670
Q+ LY + R + + LSV + L RK+CNHP + +
Sbjct: 1160 RQRYLYEDFMSRAKTRETLQTGNLLSVINVLMQLRKVCNHPNMFE 1204
Score = 45 (20.9 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 22/100 (22%), Positives = 42/100 (42%)
Query: 40 PGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHK--SWEQDGVLEISGTMAILKDTLGK 97
P TE+S A ++ +T+V +V P+ + H+ + + G+ S K
Sbjct: 27 PHSTEISVAPANSTSTTVRAAGSVGAALPATRHHQHIATQVKGIASSSSKQQ--KQLASA 84
Query: 98 VIDSKVKILDEIKPGTSSLQSSPRLNASDNVQ--SSTVNA 135
+ + L + + T+ ++ A NV SST+ A
Sbjct: 85 QLPVPLSPLPQQQQQTAEATAAAAAPAHSNVSVSSSTIEA 124
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 351 (128.6 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 104/321 (32%), Positives = 156/321 (48%)
Query: 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI---- 418
D + GFL R L +Q+ GV +L+E C A G IL DEMGLGKT+Q IA +
Sbjct: 492 DFKMPGFLFRKLFKYQQTGVRWLWELHCQQA-----GGILGDEMGLGKTIQIIAFLAGLS 546
Query: 419 WTLLR-QGP-YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV--NQKNKAEDY 474
++ +R +G Y + +IV P+++ W EF W R+ H + K E
Sbjct: 547 YSKIRTRGSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTQKKEKL 606
Query: 475 V--YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKR 532
+ + +LI SY + I ++ +I DEGH+++N + + R
Sbjct: 607 IRDIAHCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHR 666
Query: 533 ILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELR 592
I+LSG+P+QN+L+E + L DF PG LG+L F + F PI N++ Q
Sbjct: 667 IILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKC 726
Query: 593 SSQLAKRTAGFILRRT-SDVQASL-LNSKRETLLVCRATPLQQSLYLRCVEYWDARASRD 650
+ L ++LRR SDV+ SL L K E +L CR T Q +Y ++ + +
Sbjct: 727 ACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTEEQHKVYQNFIDSKEVYRILN 786
Query: 651 SHLSVTH---ALRKICNHPGL 668
+ + ALRKICNHP L
Sbjct: 787 GDMQIFSGLVALRKICNHPDL 807
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 353 (129.3 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
Identities = 99/310 (31%), Positives = 157/310 (50%)
Query: 382 VSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS 441
V +LYE C G I+ DEMGLGKT+Q ++ + +L G P LIV P+
Sbjct: 803 VRWLYELHCQET-----GGIVGDEMGLGKTVQIVSFLASLHYSRRLGGPA----LIVAPA 853
Query: 442 SLTSNWNDEFKKWLGLTRMCPYHV-------NQKNKAEDYV--YSRVSPVLIISYEMLIR 492
+L SNW EF KW R+ +H N + ED V + +L+ +++ +
Sbjct: 854 TLLSNWIKEFHKWWPPFRVGLFHSSGSGGGGNDGSDKEDIVKKIAEKGHILLTTFDSIRI 913
Query: 493 AYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLND 552
+ ++ ++ +I DEGH+++N +++ L R++LSG+P+QN L E + L D
Sbjct: 914 NQEILLKYHWEYVILDEGHKIRNPDAEITLSCKQLQTPHRVILSGSPIQNKLTELWSLFD 973
Query: 553 FANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-SDV 611
F PG LG+L F+ F PI N++ Q + L + ++LRR SDV
Sbjct: 974 FVFPGRLGTLPIFKSQFSLPISVGGFANASPIQVQAAYKCAVALRDLISPYMLRRVKSDV 1033
Query: 612 QASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVTHA---LRKICNHPGL 668
SL SK E +L+C TP Q+ LYL ++ D ++ D + + L+KICNHP +
Sbjct: 1034 LKSL-PSKNEQVLMCPLTPFQEKLYLEFLDSNDIKSVLDGRRNALYGIDILKKICNHPDI 1092
Query: 669 VQQPDMMEEE 678
+ D +E+
Sbjct: 1093 LHM-DASDED 1101
Score = 48 (22.0 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 258 VDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKS--DSGIG 299
+ T+ + I D+K KP NS G + I LP S D G
Sbjct: 289 IKTDREKRINDQKR--KPDGSNSSGENKSIGELPLPSLFDKAFG 330
Score = 41 (19.5 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 11 DILNEAYLDQEE-QFDSTLSKENHNYV 36
D+ + YL+ E+ ++ L+K N+N +
Sbjct: 732 DLAEDEYLNNEKLDEEAVLNKNNNNEI 758
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 347 (127.2 bits), Expect = 4.5e-28, P = 4.5e-28
Identities = 98/327 (29%), Positives = 170/327 (51%)
Query: 365 TVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424
T+ G ++ +L PHQR+G+++L+ +G IL D+MGLGKT+Q + +
Sbjct: 368 TLPGKIATMLYPHQREGLNWLWS-----LHTQGKGGILGDDMGLGKTMQICSFL-----A 417
Query: 425 GPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRV---SP 481
G + +I++ L+V P +L +W E +GL++M + KA +Y +
Sbjct: 418 GLFHSKLIKRALVVAPKTLLPHWMKELAT-VGLSQMTREYYGTSTKAREYDLHHILQGKG 476
Query: 482 VLIISYEML---IRAYQ-----TIVDTE----FDLLICDEGHRLKNGKSKLYELMTGLNI 529
+L+ +Y+++ +A Q T D E +D +I DEGH +KN ++ + + +
Sbjct: 477 ILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPS 536
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
RI++SGTP+QN+L+E + L +F+ PG+LG F++N+E IL N+T+ ++ +G
Sbjct: 537 SHRIIISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHYILRGTDKNATDREQRIG 596
Query: 590 ELRSSQLAKRTAGFILRRTS------DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYW 643
+ L + F LRR D S L+ K E ++ R T Q+ LY +
Sbjct: 597 STVAKNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEAFLNSE 656
Query: 644 DARASRD-SHLSVTHALRKICNHPGLV 669
++ D S L+ L+KIC+HP L+
Sbjct: 657 IVLSAFDGSPLAALTILKKICDHPLLL 683
>UNIPROTKB|F1PB65 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 CTD:23132 KO:K10876
OMA:HNLTTPF InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AAEX03012203 EMBL:AAEX03012204
RefSeq:XP_003639804.1 Ensembl:ENSCAFT00000016081 GeneID:476608
KEGG:cfa:476608 Uniprot:F1PB65
Length = 1467
Score = 248 (92.4 bits), Expect = 5.6e-28, Sum P(2) = 5.6e-28
Identities = 59/173 (34%), Positives = 96/173 (55%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D++ICDEGHR+KN ++ + + + R+R++L+G PLQN+L E++ + DF P LG+
Sbjct: 458 DVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTR 517
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
+EF FE PIL + +ST L RS L GF+ RR V L +K E
Sbjct: 518 QEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
Query: 623 LLVCRATPLQQSLYLRCVE-YWDARASRDSHLSVTHALR---KICNHPGLVQQ 671
+++ R + +Q+ LY + ++ + D +S L+ A KI NHP ++ +
Sbjct: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYE 630
Score = 156 (60.0 bits), Expect = 5.6e-28, Sum P(2) = 5.6e-28
Identities = 55/160 (34%), Positives = 74/160 (46%)
Query: 370 LSRVLKPHQRQGVSFLYERVCD-LASLDLE---GAILADEMGLGKTLQCIALIWTLLRQG 425
L+R +KPHQ G+ FLY+ + + L G ILA MGLGKTLQ I+ I L R
Sbjct: 267 LARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHT 326
Query: 426 PYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLII 485
P + VL + P + NW EF WL P NK E+ V R V I+
Sbjct: 327 P-----AKTVLAIVPVNTLQNWLAEFNMWLPAPEALP----ADNKPEE-VQPRFFKVHIL 376
Query: 486 SYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+ E A + V ++ EG L G ++Y L+T
Sbjct: 377 NDEHKTMAARAKVMADW----VSEGGVLLMGY-EMYRLLT 411
Score = 56 (24.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYE 248
VL + P + NW EF WL P NK E+ V R V I++ E
Sbjct: 331 VLAIVPVNTLQNWLAEFNMWLPAPEALP----ADNKPEE-VQPRFFKVHILNDE 379
Score = 39 (18.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 555 NPGVLGSLREFRKNFEEPIL 574
NP V G L + F +P+L
Sbjct: 1372 NPSVPGILPSYSLPFSQPLL 1391
>UNIPROTKB|H0Y760 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
ProteinModelPortal:H0Y760 Ensembl:ENST00000432863 Uniprot:H0Y760
Length = 1296
Score = 248 (92.4 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 59/173 (34%), Positives = 96/173 (55%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D++ICDEGHR+KN ++ + + + R+R++L+G PLQN+L E++ + DF P LG+
Sbjct: 287 DVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTR 346
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
+EF FE PIL + +ST L RS L GF+ RR V L +K E
Sbjct: 347 QEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 406
Query: 623 LLVCRATPLQQSLYLRCVE-YWDARASRDSHLSVTHALR---KICNHPGLVQQ 671
+++ R + +Q+ LY + ++ + D +S L+ A KI NHP ++ +
Sbjct: 407 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYE 459
Score = 154 (59.3 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 55/160 (34%), Positives = 74/160 (46%)
Query: 370 LSRVLKPHQRQGVSFLYERVCD-LASLDLE---GAILADEMGLGKTLQCIALIWTLLRQG 425
L+R +KPHQ G+ FLY+ + + L G ILA MGLGKTLQ I+ I L R
Sbjct: 96 LARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHT 155
Query: 426 PYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLII 485
P + VL + P + NW EF WL P NK E+ V R V I+
Sbjct: 156 P-----AKTVLAIVPVNTLQNWLAEFNMWLPPPEALP----ADNKPEE-VQPRFFKVHIL 205
Query: 486 SYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+ E A + V ++ EG L G ++Y L+T
Sbjct: 206 NDEHKTMASRAKVMADW----VSEGGVLLMGY-EMYRLLT 240
Score = 54 (24.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYE 248
VL + P + NW EF WL P NK E+ V R V I++ E
Sbjct: 160 VLAIVPVNTLQNWLAEFNMWLPPPEALP----ADNKPEE-VQPRFFKVHILNDE 208
Score = 39 (18.8 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 555 NPGVLGSLREFRKNFEEPIL 574
NP V G L + F +P+L
Sbjct: 1201 NPSVPGILPSYSLPFSQPLL 1220
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 347 (127.2 bits), Expect = 7.2e-28, P = 7.2e-28
Identities = 102/308 (33%), Positives = 155/308 (50%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR----QGPYG 428
+LKP+Q +G+ ++ L + +L G ILADEMGLGKT+Q I+L+ L+ GPY
Sbjct: 532 LLKPYQIKGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTISLVTYLMEVKQNNGPY- 585
Query: 429 MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ--KNKAEDYVYSRVSPVLIIS 486
L++ P S SNW +EF KW Y + + + E + VL+ +
Sbjct: 586 -------LVIVPLSTLSNWQNEFAKWAPSVTTIIYKGTKDARRRVEGQIRKGAFNVLMTT 638
Query: 487 YEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NIRKRILLSGTPLQNDLQ 545
YE +I+ + + +I DEGHRLKN KL ++ G + + R+LL+GTPLQN L
Sbjct: 639 YEYVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLP 698
Query: 546 EFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFIL 605
E + L +F P + S F + F P + ++++ +R +L K F+L
Sbjct: 699 ELWALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLIIR--RLHKVLRPFLL 756
Query: 606 RRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVE--YWDARAS---RDSHLSVTHALR 660
RR S L K E ++ C + LQ+ +Y + DA+ S R +V H LR
Sbjct: 757 RRLKKEVESQLPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAKMSSGARSLMNTVVH-LR 815
Query: 661 KICNHPGL 668
K+CNHP L
Sbjct: 816 KLCNHPFL 823
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 347 (127.2 bits), Expect = 7.2e-28, P = 7.2e-28
Identities = 107/320 (33%), Positives = 156/320 (48%)
Query: 366 VDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI----WTL 421
V GFL + L +Q+ GV +L+E C A G IL DEMGLGKT+Q IA + ++
Sbjct: 493 VPGFLFKKLFKYQQTGVRWLWELHCQQA-----GGILGDEMGLGKTIQIIAFLAGLSYSK 547
Query: 422 LR-QGP-YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH-----VNQKNK-AED 473
+R +G Y + LIV P+++ W EF W R+ H ++K + D
Sbjct: 548 IRTRGSNYRFEGLGPTLIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSCAHRKERLVRD 607
Query: 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRI 533
V+ VLI SY + I ++ +I DEGH+++N + + RI
Sbjct: 608 IVHCH--GVLITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRI 665
Query: 534 LLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593
+LSG+P+QN+L+E + L DF PG LG+L F + F PI N++ Q +
Sbjct: 666 ILSGSPMQNNLRELWSLFDFTFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCA 725
Query: 594 SQLAKRTAGFILRRT-SDVQASL-LNSKRETLLVCRATPLQQSLYLRCVE---YWDARAS 648
L ++LRR SDV+ SL L K E +L CR T Q +Y ++ +
Sbjct: 726 CVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNG 785
Query: 649 RDSHLSVTHALRKICNHPGL 668
+ S ALRKICNHP L
Sbjct: 786 ENQIFSGLVALRKICNHPDL 805
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 347 (127.2 bits), Expect = 7.3e-28, P = 7.3e-28
Identities = 103/316 (32%), Positives = 154/316 (48%)
Query: 368 GFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI----WTLLR 423
GFL + L +Q+ GV +L+E C A G IL DEMGLGKT+Q IA + ++ +R
Sbjct: 490 GFLFKKLFKYQQTGVRWLWELHCQQA-----GGILGDEMGLGKTIQIIAFLAGLSYSKIR 544
Query: 424 -QGP-YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQK--NKAEDYV--YS 477
+G Y + +IV P+++ W EF W R+ H +K E V +
Sbjct: 545 TRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSFTHKKEKLVRDIA 604
Query: 478 RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSG 537
+LI SY + I ++ +I DEGH+++N + + RI+LSG
Sbjct: 605 HCHGILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSG 664
Query: 538 TPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLA 597
+P+QN+L+E + L DF PG LG+L F + F PI N++ Q + L
Sbjct: 665 SPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLR 724
Query: 598 KRTAGFILRRT-SDVQASL-LNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSV 655
++LRR SDV+ SL L K E +L CR T Q +Y ++ + + + +
Sbjct: 725 DTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGEMQI 784
Query: 656 TH---ALRKICNHPGL 668
ALRKICNHP L
Sbjct: 785 FSGLVALRKICNHPDL 800
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 346 (126.9 bits), Expect = 8.5e-28, P = 8.5e-28
Identities = 115/397 (28%), Positives = 181/397 (45%)
Query: 291 PRKSDSGIGSLPCKRPLEEST--AETLQCNQINSHLSVTHALRKICNHPGLVQQPDVMEE 348
P+K D +P E+S + +C +RK +++ + E
Sbjct: 400 PKKEDESDDYIPSSSEEEDSQKGGKVKKCKDDGDIECYRQRIRKWKRQR--LREKEAKRE 457
Query: 349 EGQWKHNPSGKPLVD-VTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMG 407
G+ + + S + + GFL + L +Q+ GV +++E C A G IL DEMG
Sbjct: 458 AGEEESDESDAEFDEGFKIPGFLWKKLFKYQQTGVRWMWELHCQQA-----GGILGDEMG 512
Query: 408 LGKTLQCIALIWTL------LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMC 461
LGKT+Q IA + L R Y + +IV P+++ W EF W R+
Sbjct: 513 LGKTIQIIAFLAGLSYSKLKTRGSNYRYAGLGPTVIVCPATVMHQWVKEFHTWWPPFRVA 572
Query: 462 PYHVNQK--NKAEDYVYSRVSP--VLIISYEMLIRAYQTIVDT-EFDLLICDEGHRLKNG 516
H +K E + V+ +LI SY IR Q + ++ +I DEGH+++N
Sbjct: 573 VLHDTGSFTSKKEKLIPEIVASHGILITSYSY-IRIMQDYIQRYDWHYVILDEGHKIRNP 631
Query: 517 KSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILES 576
+ + R +LSG+P+QN+L+E + L DF PG LG+L F + F PI
Sbjct: 632 NAGVTTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMG 691
Query: 577 RSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-SDVQASL-LNSKRETLLVCRATPLQQS 634
N++ Q + L ++LRR +DV+A+L L K E +L CR T Q+
Sbjct: 692 GYANASPVQVQTAYKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEDQRQ 751
Query: 635 LYLRCVEYWDARASRDSHLSVTH---ALRKICNHPGL 668
+Y ++ + + + V ALRKICNHP L
Sbjct: 752 VYQTFLDSKEVYQILNGDMQVFSGLIALRKICNHPDL 788
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 327 (120.2 bits), Expect = 8.7e-28, Sum P(2) = 8.7e-28
Identities = 97/310 (31%), Positives = 153/310 (49%)
Query: 358 GKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL 417
GK L + + ++ L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +
Sbjct: 78 GKKLENYKIPVPINAELRKYQQDGVNWL----AFLNKYKLHG-ILCDDMGLGKTLQSICI 132
Query: 418 IWT--LLRQGPYGMPVIRKV-----LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK 470
+ R Y + + L+V P +LT +W DE K+ + P H
Sbjct: 133 LAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPT 192
Query: 471 AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528
+ +V +++ SY+++ + +F+ I DEGH +KNGK+KL + + L
Sbjct: 193 ERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLT 252
Query: 529 IRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL 588
RI+LSGTP+QN++ E + L DF PG LG+ R+F + +PIL SR S+ ++
Sbjct: 253 ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEA 312
Query: 589 GELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS 648
G L L ++ F+LRR + L K C +PLQ LY ++ +RA
Sbjct: 313 GVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLY---EDFAKSRAK 369
Query: 649 RDSHLSVTHA 658
D +V+ A
Sbjct: 370 CDVDETVSSA 379
Score = 59 (25.8 bits), Expect = 8.7e-28, Sum P(2) = 8.7e-28
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 659 LRKICNHPGLVQQPDMME 676
LRK+CNHP LV P E
Sbjct: 403 LRKLCNHPALVLTPQHPE 420
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 360 (131.8 bits), Expect = 8.7e-28, Sum P(2) = 8.7e-28
Identities = 109/320 (34%), Positives = 162/320 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LK +Q G+ +L L + +L G ILADEMGLGKT+Q IA I L + M V
Sbjct: 624 LKEYQVTGLEWLIS----LYTRNLNG-ILADEMGLGKTVQTIAFISFLYER----MNVRE 674
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY--VYSRVSPVLIISYEMLI 491
L+V P S SNW EF +W + Y Q + E + V+I S+E +I
Sbjct: 675 PFLVVAPLSTISNWVSEFARWSPKLHVIVYKGKQDERRETARTIPRNAFCVVITSFEYII 734
Query: 492 RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551
+ +T+ + +I DEGHR+KN SKL + + R R+LL+GTPLQNDL E + L
Sbjct: 735 KDRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTPLQNDLGELWALL 794
Query: 552 DFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-SD 610
+F P + S F+ F P +++ N + + ++L + F+LRR SD
Sbjct: 795 NFLLPTIFNSADTFQNWFNAPF-QAKGKNLINVNEEESLIIINRLHQVLRFFLLRRLKSD 853
Query: 611 VQASLLNSKRETLLVCRATPLQQSLYLRCVEYW------DARASRDSHL------SVTHA 658
V+ S L K+E ++ C + LQ ++Y VEY D++ R L ++
Sbjct: 854 VE-SQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSGRLKMKGFNNIVKQ 912
Query: 659 LRKICNHPGLVQQP-DMMEE 677
L+KICNHP L + D+ E+
Sbjct: 913 LQKICNHPYLFKDEWDINED 932
Score = 37 (18.1 bits), Expect = 8.7e-28, Sum P(2) = 8.7e-28
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 12 ILNEAYLDQEEQFDSTLSKENHN 34
+L E L Q E ++T + N+N
Sbjct: 190 LLQEKQLRQTETLNNTNNNNNNN 212
>UNIPROTKB|Q9Y4B4 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 EMBL:AB018352
EMBL:BC001474 EMBL:BC024298 IPI:IPI00294787 RefSeq:NP_055921.2
UniGene:Hs.105399 HSSP:Q97XQ5 ProteinModelPortal:Q9Y4B4 SMR:Q9Y4B4
DIP:DIP-47284N IntAct:Q9Y4B4 MINT:MINT-3086380 STRING:Q9Y4B4
PhosphoSite:Q9Y4B4 DMDM:296439458 PaxDb:Q9Y4B4 PRIDE:Q9Y4B4
DNASU:23132 Ensembl:ENST00000409535 Ensembl:ENST00000565618
GeneID:23132 KEGG:hsa:23132 UCSC:uc003dbj.3 CTD:23132
GeneCards:GC03P051637 HGNC:HGNC:29123 HPA:HPA035004
neXtProt:NX_Q9Y4B4 PharmGKB:PA143485591 eggNOG:COG0553
HOGENOM:HOG000168429 HOVERGEN:HBG104283 InParanoid:Q9Y4B4 KO:K10876
OMA:HNLTTPF OrthoDB:EOG4X6C7G SABIO-RK:Q9Y4B4 GenomeRNAi:23132
NextBio:44383 ArrayExpress:Q9Y4B4 Bgee:Q9Y4B4 CleanEx:HS_RAD54L2
Genevestigator:Q9Y4B4 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Uniprot:Q9Y4B4
Length = 1467
Score = 248 (92.4 bits), Expect = 9.1e-28, Sum P(2) = 9.1e-28
Identities = 59/173 (34%), Positives = 96/173 (55%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D++ICDEGHR+KN ++ + + + R+R++L+G PLQN+L E++ + DF P LG+
Sbjct: 458 DVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTR 517
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
+EF FE PIL + +ST L RS L GF+ RR V L +K E
Sbjct: 518 QEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
Query: 623 LLVCRATPLQQSLYLRCVE-YWDARASRDSHLSVTHALR---KICNHPGLVQQ 671
+++ R + +Q+ LY + ++ + D +S L+ A KI NHP ++ +
Sbjct: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYE 630
Score = 154 (59.3 bits), Expect = 9.1e-28, Sum P(2) = 9.1e-28
Identities = 55/160 (34%), Positives = 74/160 (46%)
Query: 370 LSRVLKPHQRQGVSFLYERVCD-LASLDLE---GAILADEMGLGKTLQCIALIWTLLRQG 425
L+R +KPHQ G+ FLY+ + + L G ILA MGLGKTLQ I+ I L R
Sbjct: 267 LARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHT 326
Query: 426 PYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLII 485
P + VL + P + NW EF WL P NK E+ V R V I+
Sbjct: 327 P-----AKTVLAIVPVNTLQNWLAEFNMWLPPPEALP----ADNKPEE-VQPRFFKVHIL 376
Query: 486 SYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+ E A + V ++ EG L G ++Y L+T
Sbjct: 377 NDEHKTMASRAKVMADW----VSEGGVLLMGY-EMYRLLT 411
Score = 54 (24.1 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYE 248
VL + P + NW EF WL P NK E+ V R V I++ E
Sbjct: 331 VLAIVPVNTLQNWLAEFNMWLPPPEALP----ADNKPEE-VQPRFFKVHILNDE 379
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 555 NPGVLGSLREFRKNFEEPIL 574
NP V G L + F +P+L
Sbjct: 1372 NPSVPGILPSYSLPFSQPLL 1391
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 345 (126.5 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 119/391 (30%), Positives = 187/391 (47%)
Query: 308 EESTAETLQCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVD 367
EE+ N N+ + V + ++ N + PD EE ++ NP+ L D+T+
Sbjct: 607 EEALRRMAAQNAQNALIEVQNKAKQFDNSEESFKNPDTNGEEMNFQ-NPT--LLGDITIP 663
Query: 368 --GFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQG 425
L LK +Q +G+++L +L + G ILADEMGLGKT+Q I+++ L
Sbjct: 664 QPNMLKCTLKEYQLKGLNWL----ANLYEQGING-ILADEMGLGKTVQSISVLAYLAET- 717
Query: 426 PYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--------EDYVYS 477
Y M L+VTP+S NW E K++ ++ PY N K++ + Y
Sbjct: 718 -YNM--WGPFLVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKFWDRKSLRYD 774
Query: 478 RVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILL 535
+ SP VL+ SY++++ ++ +I DE +K+ S ++ + L R R+LL
Sbjct: 775 KDSPFHVLVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLL 834
Query: 536 SGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQ 595
+GTP+QN +QE + L F P + S EF F + I ES + ++T SL E + +
Sbjct: 835 TGTPIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDI-ESHAQSNT----SLDEQQLRR 889
Query: 596 LAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY--LRC---------VEYWD 644
L F+LRR S L K E + C T Q+ LY LR +E
Sbjct: 890 LHMILKPFMLRRIKKNVQSELGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELES 949
Query: 645 ARASRDSHLS-VTHALRKICNHPGLVQQPDM 674
S DS L+ + RK+CNHP L ++ D+
Sbjct: 950 NSTSSDSSLANLVMQFRKVCNHPDLFERADV 980
>WB|WBGene00007761 [details] [associations]
symbol:rad-26 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:Z54236 PIR:T19508
RefSeq:NP_501545.1 ProteinModelPortal:Q18241 SMR:Q18241
DIP:DIP-26472N IntAct:Q18241 MINT:MINT-1047515 STRING:Q18241
PaxDb:Q18241 EnsemblMetazoa:C27B7.4 GeneID:177706
KEGG:cel:CELE_C27B7.4 UCSC:C27B7.4 CTD:177706 WormBase:C27B7.4
HOGENOM:HOG000022111 InParanoid:Q18241 OMA:MERSIFN NextBio:898020
Uniprot:Q18241
Length = 1274
Score = 258 (95.9 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 65/199 (32%), Positives = 108/199 (54%)
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
LIR+ +++ DL++CDEGH++KN +++ + +N ++RI+L+G PLQN+L E+F
Sbjct: 447 LIRS--ALLEPGPDLVVCDEGHKIKNITAEISMTLGAINTKRRIVLTGYPLQNNLLEYFC 504
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
+ DF P LG+ + F FE+PI + +S+ + R+ L + GF+ RRT
Sbjct: 505 MIDFVRPKYLGTRKSFIDRFEKPIKNGQCVDSSPDDVKIALQRTHVLVELVKGFVQRRTH 564
Query: 610 DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYW---DARASRDS---HLSVTHALRKIC 663
+ +L +E +L+ R + +Q+ LY V W + A+ D+ L A KI
Sbjct: 565 HLLKKILPESKEYVLLLRKSQIQRQLYRNFV-LWAKNEIAANNDAVFNPLMAFSACSKIW 623
Query: 664 NHPG----LVQQPDMMEEE 678
NHP LV+Q EE+
Sbjct: 624 NHPDILYRLVEQKKRAEED 642
Score = 149 (57.5 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 38/105 (36%), Positives = 53/105 (50%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLY----ERVCDLASLDLEGAILADEMGLGK 410
+P P D+ V L+ VL+PHQ G+ F+Y E + + D G ILA MGLGK
Sbjct: 239 HPEEDP--DIFVISHLTHVLQPHQLGGIRFMYDNTIESLGEYKKSDGFGCILAHSMGLGK 296
Query: 411 TLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL 455
T+Q I LR +KVL++ P + NW E+ KW+
Sbjct: 297 TIQVITFSEIFLRATK-----AKKVLVIVPINTIQNWYSEYDKWI 336
Score = 60 (26.2 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWL 215
+VL++ P + NW E+ KW+
Sbjct: 315 KVLVIVPINTIQNWYSEYDKWI 336
Score = 38 (18.4 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 19 DQEEQFDSTLSKENHNYVY-----PEP 40
D EE F ++ +N Y Y PEP
Sbjct: 116 DFEEMFGFSVENDNKKYRYGDEEKPEP 142
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 347 (127.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 104/318 (32%), Positives = 156/318 (49%)
Query: 366 VDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI----WTL 421
V GFL + L +Q+ GV +L+E C A G IL DEMGLGKT+Q IA + ++
Sbjct: 494 VPGFLFKKLFKYQQTGVRWLWELHCQQA-----GGILGDEMGLGKTIQIIAFLAGLSYSK 548
Query: 422 LR-QGP-YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV--NQKNKAEDYVYS 477
+R +G Y + +IV P+++ W EF W R+ H + NK +
Sbjct: 549 IRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAILHETGSYTNKKVKLIRE 608
Query: 478 RVS--PVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILL 535
S +LI SY + I ++ +I DEGH+++N + + RI+L
Sbjct: 609 IASCHGILITSYSYIRLMQDNIHSYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIIL 668
Query: 536 SGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQ 595
SG+P+QN+L+E + L DF PG LG+L F + F PI N++ Q +
Sbjct: 669 SGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV 728
Query: 596 LAKRTAGFILRRT-SDVQASL-LNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHL 653
L ++LRR +DV+ SL L K E +L CR T Q+ +Y ++ + + +
Sbjct: 729 LRDAINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDSKEVYQILNGDM 788
Query: 654 SVTH---ALRKICNHPGL 668
V ALRKICNHP L
Sbjct: 789 QVFSGLVALRKICNHPDL 806
Score = 48 (22.0 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 69 SAKKHKSWEQDGVLEISGTMAILKDTLG--KVID--SKVKILDEIKPGTSSLQS 118
S K+ K ++ + +I L+ LG +++D ++++ D+ +PG SSL S
Sbjct: 176 SVKRQKYNKEQQLKKIKAKQKRLQAVLGGTEILDKVNEIEFEDDEEPGPSSLGS 229
Score = 45 (20.9 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 4 KDLTNVLDILNEAYLDQEEQFDSTLSKENHNYVYPEPGGTEVSEAQN 50
KD+ LD + ++E+Q +K+ + GGTE+ + N
Sbjct: 168 KDINRKLDSVKRQKYNKEQQLKKIKAKQKR--LQAVLGGTEILDKVN 212
Score = 37 (18.1 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 39 EPGGTEVSEAQNSNHA 54
EP E E Q S+HA
Sbjct: 382 EPEAVEEEEEQASSHA 397
Score = 37 (18.1 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 TNVLDILNEA-YLDQEEQFDSTL 28
T +LD +NE + D EE S+L
Sbjct: 205 TEILDKVNEIEFEDDEEPGPSSL 227
>RGD|1310600 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=ISO]
[GO:0051276 "chromosome organization" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 248 (92.4 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 59/173 (34%), Positives = 96/173 (55%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D++ICDEGHR+KN ++ + + + R+R++L+G PLQN+L E++ + DF P LG+
Sbjct: 457 DVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTR 516
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
+EF FE PIL + +ST L RS L GF+ RR V L +K E
Sbjct: 517 QEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 576
Query: 623 LLVCRATPLQQSLYLRCVE-YWDARASRDSHLSVTHALR---KICNHPGLVQQ 671
+++ R + +Q+ LY + ++ + D +S L+ A KI NHP ++ +
Sbjct: 577 VILVRLSQIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYE 629
Score = 155 (59.6 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 54/160 (33%), Positives = 75/160 (46%)
Query: 370 LSRVLKPHQRQGVSFLYERVCD-LASLDLE---GAILADEMGLGKTLQCIALIWTLLRQG 425
L+R +KPHQ G+ FLY+ + + L G ILA MGLGKTLQ I+ I L R
Sbjct: 266 LARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHT 325
Query: 426 PYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLII 485
P + VL + P + NW EF WL P +K E+ + R V I+
Sbjct: 326 P-----AKTVLAIVPVNTLQNWLAEFNMWLPAPEALP----ADSKPEE-IQPRFFKVHIL 375
Query: 486 SYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+ E A + V T++ EG L G ++Y L+T
Sbjct: 376 NDEHKTVASRAKVTTDW----VSEGGVLLMGY-EMYRLLT 410
Score = 53 (23.7 bits), Expect = 8.3e-17, Sum P(3) = 8.3e-17
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY 254
VL + P + NW EF WL P +K E+ + R V I++ E A
Sbjct: 330 VLAIVPVNTLQNWLAEFNMWLPAPEALP----ADSKPEE-IQPRFFKVHILNDEHKTVAS 384
Query: 255 QTIVDTEF 262
+ V T++
Sbjct: 385 RAKVTTDW 392
Score = 40 (19.1 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 39 EPGGTEVSEAQNSNHA 54
E GGT V++A N + A
Sbjct: 228 EKGGTHVNDALNQHDA 243
>RGD|1561889 [details] [associations]
symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0019901 "protein kinase binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 248 (92.4 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 59/173 (34%), Positives = 96/173 (55%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D++ICDEGHR+KN ++ + + + R+R++L+G PLQN+L E++ + DF P LG+
Sbjct: 457 DVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTR 516
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
+EF FE PIL + +ST L RS L GF+ RR V L +K E
Sbjct: 517 QEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 576
Query: 623 LLVCRATPLQQSLYLRCVE-YWDARASRDSHLSVTHALR---KICNHPGLVQQ 671
+++ R + +Q+ LY + ++ + D +S L+ A KI NHP ++ +
Sbjct: 577 VILVRLSQIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYE 629
Score = 155 (59.6 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 54/160 (33%), Positives = 75/160 (46%)
Query: 370 LSRVLKPHQRQGVSFLYERVCD-LASLDLE---GAILADEMGLGKTLQCIALIWTLLRQG 425
L+R +KPHQ G+ FLY+ + + L G ILA MGLGKTLQ I+ I L R
Sbjct: 266 LARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHT 325
Query: 426 PYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLII 485
P + VL + P + NW EF WL P +K E+ + R V I+
Sbjct: 326 P-----AKTVLAIVPVNTLQNWLAEFNMWLPAPEALP----ADSKPEE-IQPRFFKVHIL 375
Query: 486 SYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+ E A + V T++ EG L G ++Y L+T
Sbjct: 376 NDEHKTVASRAKVTTDW----VSEGGVLLMGY-EMYRLLT 410
Score = 53 (23.7 bits), Expect = 8.3e-17, Sum P(3) = 8.3e-17
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY 254
VL + P + NW EF WL P +K E+ + R V I++ E A
Sbjct: 330 VLAIVPVNTLQNWLAEFNMWLPAPEALP----ADSKPEE-IQPRFFKVHILNDEHKTVAS 384
Query: 255 QTIVDTEF 262
+ V T++
Sbjct: 385 RAKVTTDW 392
Score = 40 (19.1 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 39 EPGGTEVSEAQNSNHA 54
E GGT V++A N + A
Sbjct: 228 EKGGTHVNDALNQHDA 243
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 349 (127.9 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 104/318 (32%), Positives = 156/318 (49%)
Query: 366 VDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI----WTL 421
V GFL + L +Q+ GV +L+E C A G IL DEMGLGKT+Q IA + ++
Sbjct: 499 VPGFLFKKLFKYQQTGVRWLWELHCQQA-----GGILGDEMGLGKTIQIIAFLAGLSYSK 553
Query: 422 LR-QGP-YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV--NQKNKAEDYV-- 475
+R +G Y + +IV P+++ W EF W R+ H + +K E +
Sbjct: 554 IRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRD 613
Query: 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILL 535
+ +LI SY + I ++ +I DEGH+++N + + RI+L
Sbjct: 614 VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIIL 673
Query: 536 SGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQ 595
SG+P+QN+L+E + L DF PG LG+L F + F PI N++ Q +
Sbjct: 674 SGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACV 733
Query: 596 LAKRTAGFILRRT-SDVQASL-LNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHL 653
L ++LRR SDV+ SL L K E +L CR T Q +Y V+ + + +
Sbjct: 734 LRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEM 793
Query: 654 SVTH---ALRKICNHPGL 668
+ ALRKICNHP L
Sbjct: 794 QIFSGLIALRKICNHPDL 811
Score = 43 (20.2 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 4 KDLTNVLDILNEAYLDQEEQFDSTLSKENHNYVYPEPGGTEV 45
+D+ LD + ++E+Q +K+ H + GG EV
Sbjct: 165 RDINRKLDSVKRQKYNKEQQLKKITAKQKH--LQAILGGAEV 204
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 341 (125.1 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 99/305 (32%), Positives = 153/305 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q +G+ ++ L + +L G ILADEMGLGKT+Q IA I L+ P
Sbjct: 366 LKPYQIKGLEWMVS----LFNNNLNG-ILADEMGLGKTIQTIAFITYLMEIKKTSGPF-- 418
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--EDYVYSRVSPVLIISYEMLI 491
L++ P S NW +EF KW + Y ++ + E + S VL+ ++E +I
Sbjct: 419 --LVIVPLSTVPNWQNEFDKWAANVHLIAYKGPKETRKVFEPIIKSGKFNVLLTTFEYVI 476
Query: 492 RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFYL 550
R + + +I DEGHRLKN KL E++ T ++R+L++GTPLQN L E + L
Sbjct: 477 REKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWAL 536
Query: 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSD 610
+F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 537 LNFLLPSIFSSCSTFEQWFNAPFATTGEKVELTQEETMLIIR--RLHKVLRPFLLRRLKK 594
Query: 611 VQASLLNSKRETLLVCRATPLQQSLYLRCVE--YWDARA---SRDSHLSVTHALRKICNH 665
S L K E ++ C + LQ+ LY + D + S+ ++ H LRK+CNH
Sbjct: 595 EVESELPDKMEFVVRCDMSALQKVLYKHMQKGLLLDGKTNTGSKSLRNTMIH-LRKLCNH 653
Query: 666 PGLVQ 670
P L +
Sbjct: 654 PFLFE 658
>FB|FBgn0039338 [details] [associations]
symbol:XNP "XNP" species:7227 "Drosophila melanogaster"
[GO:0003678 "DNA helicase activity" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0008347
"glial cell migration" evidence=IMP] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0006917 "induction of apoptosis"
evidence=IMP] [GO:0046328 "regulation of JNK cascade" evidence=IGI]
[GO:0005700 "polytene chromosome" evidence=IDA] [GO:0000775
"chromosome, centromeric region" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0005722 "beta-heterochromatin"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0006336 "DNA
replication-independent nucleosome assembly" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0006917 GO:GO:0003677
GO:GO:0006281 GO:GO:0016887 GO:GO:0004386 GO:GO:0070868
GO:GO:0046328 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008347 KO:K10779 EMBL:AF217802 EMBL:AY058592
RefSeq:NP_651398.1 RefSeq:NP_733107.1 UniGene:Dm.1935
ProteinModelPortal:Q9GQN5 SMR:Q9GQN5 STRING:Q9GQN5 PaxDb:Q9GQN5
EnsemblMetazoa:FBtr0084837 EnsemblMetazoa:FBtr0084838 GeneID:43080
KEGG:dme:Dmel_CG4548 UCSC:CG4548-RA CTD:43080 FlyBase:FBgn0039338
GeneTree:ENSGT00550000074619 InParanoid:Q9GQN5 OMA:KQEYVIN
OrthoDB:EOG4ZW3S5 PhylomeDB:Q9GQN5 GenomeRNAi:43080 NextBio:832107
Bgee:Q9GQN5 GermOnline:CG4548 GO:GO:0005722 Uniprot:Q9GQN5
Length = 1311
Score = 258 (95.9 bits), Expect = 3.0e-27, Sum P(3) = 3.0e-27
Identities = 56/142 (39%), Positives = 83/142 (58%)
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
Q +VD DL++CDEGH LKN K+ + + +T + ++RI+L+GTPLQN+L+E++ + F
Sbjct: 602 QALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFV 661
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
P +LG+ +E+ F PI + +STE L + RS L K G I RR V A
Sbjct: 662 KPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAP 721
Query: 615 LLNSKRETLLVCRATPLQQSLY 636
L K E ++ + LQQ LY
Sbjct: 722 YLPPKHEYVVYTTLSELQQKLY 743
Score = 144 (55.7 bits), Expect = 3.0e-27, Sum P(3) = 3.0e-27
Identities = 38/94 (40%), Positives = 50/94 (53%)
Query: 366 VDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GAILADEMGLGKTLQCIALIWTL 421
VD L + LKPHQ GV F+++ + E G ILA MGLGKTLQ + L TL
Sbjct: 447 VDKGLLKKLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTLQVVTLSHTL 506
Query: 422 LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL 455
L + +VLI++P S +NW EF W+
Sbjct: 507 LVNTR--RTGVDRVLIISPLSTVNNWAREFTSWM 538
Score = 73 (30.8 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 188 RRSYILRVLIVTPSSLTSNWNDEFKKWL 215
RR+ + RVLI++P S +NW EF W+
Sbjct: 511 RRTGVDRVLIISPLSTVNNWAREFTSWM 538
Score = 40 (19.1 bits), Expect = 3.0e-27, Sum P(3) = 3.0e-27
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 182 DHQEKNRRSYILRVLIVTPSSLTS 205
D ++KN+R +I +++ LT+
Sbjct: 373 DDKQKNKRKHIRKIIKTKDLDLTT 396
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 339 (124.4 bits), Expect = 3.2e-27, P = 3.2e-27
Identities = 103/307 (33%), Positives = 158/307 (51%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q QG+++L L L G ILADEMGLGKTLQ I+ + LR Y +
Sbjct: 139 LREYQIQGLNWLIS----LYENRLSG-ILADEMGLGKTLQTISFLG-YLR---YIKHIDG 189
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA---EDYVYSRVSPVLIISYEML 490
+++ P S NW EF KW + +++ +A +D +Y+ VLI S+EM+
Sbjct: 190 PFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEMI 249
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550
+R + ++ ++ DE HR+KN S L +++ R R+L++GTPLQN+L E + L
Sbjct: 250 LREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWAL 309
Query: 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-S 609
+F P V G +F + F+ S + E Q+ + S+L + + F+LRR +
Sbjct: 310 LNFLLPDVFGDSDQFDEAFDNQ--NSEELDEEEKQRRQDKA-VSELHQLLSPFLLRRVKA 366
Query: 610 DVQASLLNSKRETLLVCRATPLQQSLYLRCVEY-WDA-------RASRDSHLSVTHALRK 661
DV+ SLL K ET + T +Q Y R +E DA R + L++ LRK
Sbjct: 367 DVEKSLL-PKIETNVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRK 425
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 426 CCNHPYL 432
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 339 (124.4 bits), Expect = 3.2e-27, P = 3.2e-27
Identities = 103/307 (33%), Positives = 158/307 (51%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q QG+++L L L G ILADEMGLGKTLQ I+ + LR Y +
Sbjct: 139 LREYQIQGLNWLIS----LYENRLSG-ILADEMGLGKTLQTISFLG-YLR---YIKHIDG 189
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA---EDYVYSRVSPVLIISYEML 490
+++ P S NW EF KW + +++ +A +D +Y+ VLI S+EM+
Sbjct: 190 PFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEMI 249
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550
+R + ++ ++ DE HR+KN S L +++ R R+L++GTPLQN+L E + L
Sbjct: 250 LREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWAL 309
Query: 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-S 609
+F P V G +F + F+ S + E Q+ + S+L + + F+LRR +
Sbjct: 310 LNFLLPDVFGDSDQFDEAFDNQ--NSEELDEEEKQRRQDKA-VSELHQLLSPFLLRRVKA 366
Query: 610 DVQASLLNSKRETLLVCRATPLQQSLYLRCVEY-WDA-------RASRDSHLSVTHALRK 661
DV+ SLL K ET + T +Q Y R +E DA R + L++ LRK
Sbjct: 367 DVEKSLL-PKIETNVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRK 425
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 426 CCNHPYL 432
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 339 (124.4 bits), Expect = 3.2e-27, P = 3.2e-27
Identities = 97/305 (31%), Positives = 154/305 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+ ++ L + D G ILADEMGLGKT+Q IALI LL P
Sbjct: 386 LRSYQLEGLQWMVS----LYNNDYNG-ILADEMGLGKTIQTIALIAYLLESKDLHGPH-- 438
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
LI+ P ++ NW +EF W Y +++ + E + +R++ VLI Y++
Sbjct: 439 --LILAPKAVLPNWENEFALWAPSISAFLYDGSKEKRTE--IRARIAGGKFNVLITHYDL 494
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFF 548
++R + +++ +I DEGHRLKN + L + + TG I++R+LL+GTP+QN LQE +
Sbjct: 495 IMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELW 554
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P + S+ F + F P E S + T+ ++ L R + + F+LRR
Sbjct: 555 SLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRP---FLLRRK 611
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYW-----DARASRDSHLSVTHALRKIC 663
L K + +L C + Q+ Y + + S ++T LRK C
Sbjct: 612 KSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNLTMQLRKCC 671
Query: 664 NHPGL 668
NHP L
Sbjct: 672 NHPYL 676
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 262 (97.3 bits), Expect = 3.5e-27, Sum P(2) = 3.5e-27
Identities = 74/221 (33%), Positives = 113/221 (51%)
Query: 463 YHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY-QTIVDTEFDLLICDEGHRLKNGKSKLY 521
+H KN E V++R +LI +Y L R Y I+ E+ + DEGH+++N S++
Sbjct: 398 FHRYAKNLVES-VFTR-GHILITTYAGL-RIYGDLILPREWGYCVLDEGHKIRNPDSEIS 454
Query: 522 ELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNS 581
+ RI+LSGTP+QN+L E + L DF PG LG+L F+ F PI N+
Sbjct: 455 ISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANA 514
Query: 582 TEAQKSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
+ Q + L + ++LRR DV A L K E +L C+ TPLQ+ Y +
Sbjct: 515 SNVQVQTAYKCACMLRDLISPYLLRRMKLDVAADL-PKKSEQVLFCKLTPLQRKAYQDFL 573
Query: 641 EYWDARASRDSHLSVTHA---LRKICNHPGLVQQPDMMEEE 678
+ D + + + + LRKICNHP LV + ++ +E
Sbjct: 574 QGSDMQKILNGKRQMLYGIDILRKICNHPDLVTREYLLHKE 614
Score = 129 (50.5 bits), Expect = 3.5e-27, Sum P(2) = 3.5e-27
Identities = 34/100 (34%), Positives = 50/100 (50%)
Query: 365 TVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424
T+ G + L +Q V +L+E C A G I+ DEMGLGKT+Q ++ + +L
Sbjct: 268 TIPGDIRPHLFRYQVTCVQWLWELYCQEA-----GGIIGDEMGLGKTIQIVSFLSSLHHS 322
Query: 425 GPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH 464
G + P LIV P++L W +EF W R+ H
Sbjct: 323 GKFQKPA----LIVCPATLMKQWVNEFHTWWAPLRVVVLH 358
Score = 56 (24.8 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYH 224
LIV P++L W +EF W R+ H
Sbjct: 330 LIVCPATLMKQWVNEFHTWWAPLRVVVLH 358
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 342 (125.4 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 100/322 (31%), Positives = 160/322 (49%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT--LLRQGPY 427
+ L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +I + LR+ Y
Sbjct: 1268 IKATLRKYQQDGVNWL----AFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRKEDY 1322
Query: 428 GMP--VIRKVL---IVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPV 482
V + L I+ P SLT +W +EF ++ ++ Y + + +
Sbjct: 1323 EKTRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLRPQLSDADI 1382
Query: 483 LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542
++ SY++ + TE++ + DEGH +KN +SKL + + + R++L+GTP+QN
Sbjct: 1383 IVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQN 1442
Query: 543 DLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG 602
++ E + L DF PG LG+ + F++ F +PI SR+ ++ ++ G L L K+
Sbjct: 1443 NVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLP 1502
Query: 603 FILRRTSDVQASLLNSKRETLLVCRATPLQQSLYL------RCVEYWDARASR--DSHLS 654
F+LRR + S L K C LQ+ LY+ + V D S D
Sbjct: 1503 FMLRRLKEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQH 1562
Query: 655 VTHAL---RKICNHPGLVQQPD 673
+ AL RK+CNHP LV P+
Sbjct: 1563 IFQALQYMRKLCNHPALVLSPN 1584
Score = 50 (22.7 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 26/104 (25%), Positives = 45/104 (43%)
Query: 76 WEQDGVLEISGTMAI---LKD--TLGKVIDS--KVKILDEIKPGTSSLQSSPRLNASDNV 128
W+ + +L+ SG + + + D LGK D+ K D+IK TS L +S + N +N
Sbjct: 134 WKLNEILK-SGKVLLASSMNDYNVLGKADDNIRKQAKTDDIKQETSMLNASDKAN--ENK 190
Query: 129 QSSTVNAXXXXXXXXXXXXXXXXXLPWRPVKKSRLSLHAKTEVN 172
++ + P PV + S+ +KT +N
Sbjct: 191 SNANKKSARMLAMARRKKKMSAKNTPKHPVDITESSV-SKTLLN 233
>ZFIN|ZDB-GENE-030131-3097 [details] [associations]
symbol:rad54l2 "RAD54-like 2 (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-3097 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
CTD:23132 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX465868
IPI:IPI00481713 RefSeq:XP_687332.3 UniGene:Dr.141427
UniGene:Dr.159400 UniGene:Dr.1755 Ensembl:ENSDART00000091716
Ensembl:ENSDART00000147975 GeneID:558947 KEGG:dre:558947
NextBio:20882710 Uniprot:F1R3L6
Length = 1437
Score = 250 (93.1 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 59/175 (33%), Positives = 93/175 (53%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D++ICDEGHR+KN + + + + R+R++L+G PLQN+L E++ + DF P LG+
Sbjct: 468 DVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTR 527
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
+EF FE PIL + +ST L RS L GF+ RR DV L K E
Sbjct: 528 QEFSNMFERPILNGQCIDSTPQDVQLMRYRSHVLHSLLEGFVQRRGHDVLRHQLPPKEEH 587
Query: 623 LLVCRATPLQQSLYLRCVEYWDARASRDSHLSVTHALRKICNHPGLVQQPDMMEE 677
+++ R + LQ++LY + + A L + + L+ C + PD++ E
Sbjct: 588 VILVRLSRLQRALYTEFMNRF-REAGNSGWLGL-NPLKAFCVCCKIWNHPDVLYE 640
Score = 143 (55.4 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 39/97 (40%), Positives = 49/97 (50%)
Query: 370 LSRVLKPHQRQGVSFLYERVCD-LASLDLE---GAILADEMGLGKTLQCIALIWTLLRQG 425
L+R +KPHQ G+ FLY+ + + L G ILA MGLGKTLQ I+ I LLR
Sbjct: 277 LARAVKPHQIGGIRFLYDNLVESLERYKTSSGFGCILAHSMGLGKTLQVISFIDVLLRHT 336
Query: 426 PYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCP 462
G + VL + P + NW EF WL P
Sbjct: 337 --GA---KTVLAIVPVNTLQNWLAEFNLWLPAAEALP 368
Score = 52 (23.4 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCP 222
VL + P + NW EF WL P
Sbjct: 341 VLAIVPVNTLQNWLAEFNLWLPAAEALP 368
Score = 46 (21.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593
NP +LG+L + P L SRS +A ++LG+L +
Sbjct: 1266 NPALLGALG----HVTPPSLGSRSHLMQQAGQTLGDLHA 1300
Score = 37 (18.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 581 STEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQ 633
+ E L +L SS + +A I +TSD NS++ + V PLQ+
Sbjct: 648 ANEQDLDLDDLNSSSGTRCSAPGIKSKTSDAA----NSRQ--MSVGHLNPLQE 694
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 332 (121.9 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 93/290 (32%), Positives = 145/290 (50%)
Query: 358 GKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL 417
G+ L + + + L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +
Sbjct: 1260 GRKLENYKIPVPIKAELRKYQQDGVNWL----AFLNKYKLHG-ILCDDMGLGKTLQSICI 1314
Query: 418 IWT--LLR-------QGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQK 468
+ LR + P P+ ++V P +LT +W DE K+ + P H
Sbjct: 1315 LAGDHFLRAQEYTRTKAPDSCPL--PSIVVCPPTLTGHWVDEVGKFCSKEFLNPLHYTGP 1372
Query: 469 NKAEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG 526
+ +V +++ SY+++ + D +F+ I DEGH +KNGK+KL + +
Sbjct: 1373 PTERARLQHQVKKHNLIVASYDVVRNDVEFFRDIKFNYCILDEGHVIKNGKTKLSKAIKQ 1432
Query: 527 LNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQK 586
L R++LSGTP+QN++ E + L DF PG LG+ R+F + +PIL SR S+ ++
Sbjct: 1433 LTANYRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQ 1492
Query: 587 SLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY 636
G L L ++ F+LRR D L K C +PLQ LY
Sbjct: 1493 EAGVLAMEALHRQVLPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQVQLY 1542
Score = 59 (25.8 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 659 LRKICNHPGLVQQPDMME 676
LRK+CNHP LV P E
Sbjct: 1585 LRKLCNHPALVLTPQHPE 1602
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 337 (123.7 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 109/343 (31%), Positives = 173/343 (50%)
Query: 347 EEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEM 406
E+ Q +P P + + L L+ +Q G+ +L L S + G ILADEM
Sbjct: 800 EKHAQPSESPG--PGLKTPIPHLLRGTLREYQHFGLDWL----AGLYSNHING-ILADEM 852
Query: 407 GLGKTLQCIALIWTL-LRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
GLGKT+Q IAL+ L + G +G P L+V P+S+ NW EFKKW ++ Y+
Sbjct: 853 GLGKTIQTIALLAHLAVEHGVWG-PH----LVVVPTSVILNWEMEFKKWCPGFKIMTYYG 907
Query: 466 NQ---KNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE 522
NQ + K ++ VLI SY+++++ Q + + +I DE H +KN +S+ ++
Sbjct: 908 NQEERRQKRRGWMDDNSWNVLITSYQLVLQDQQVLKRRSWHYMILDEAHNIKNFRSQRWQ 967
Query: 523 LMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANP------GVLG--SLREFRKNFEEPIL 574
+ R R+LL+GTPLQN+L E + L F P G+ G LR F + F P+
Sbjct: 968 ALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMPTDGDEAGIEGFADLRNFSEWFRRPV- 1026
Query: 575 ESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQ 633
E + E + ++L +ILRR +DV+ + K E ++ CR + Q+
Sbjct: 1027 EQILEHGRETMDDEAKQVVTKLHTVLRPYILRRLKADVEKQM-PGKYEHVVYCRLSKRQR 1085
Query: 634 SLY---LRCVEYWDARASRDSHLSVTHAL---RKICNHPGLVQ 670
LY + + + AS ++LS+ + L RK+CNHP L +
Sbjct: 1086 YLYDGFMSRAQTKETLAS-GNYLSIINCLMQLRKVCNHPDLFE 1127
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 351 (128.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 105/311 (33%), Positives = 159/311 (51%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q QG+ ++ L + L G ILADEMGLGKT+Q IAL+ L+ P
Sbjct: 1711 LKPYQMQGLQWMVS----LYNNKLNG-ILADEMGLGKTIQTIALVSYLIEVKKNNGPF-- 1763
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ---KNKAEDYVYSRVSPVLIISYEML 490
L+V P S SNW EF KW + Y+ ++ K+K E+++ ++ +YE +
Sbjct: 1764 --LVVVPLSTLSNWGQEFSKWAPKVKRVLYYGDKPARKSKFEEFIAPGQFNAVVTTYEYI 1821
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + +++ LI DEGHR+KN SKL ++ T + R R+LL+GTPLQN L E +
Sbjct: 1822 IKDKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRLLLTGTPLQNSLPELWA 1881
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + + +F + F P ++ ++ L L +L K F+LRR
Sbjct: 1882 LLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEEQL--LIIQRLHKVLRPFLLRRLK 1939
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH------LSVTHA 658
+V+A L + K E +L C + Q +Y + V + D + L T+
Sbjct: 1940 KEVEAQLPD-KVEKVLKCDMSAFQAKMYDLIKTKGVSKLASSGGADGNPKLAKGLKNTYV 1998
Query: 659 -LRKICNHPGL 668
LRKICNHP L
Sbjct: 1999 QLRKICNHPYL 2009
Score = 43 (20.2 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 85 SGTMAILKDTLGKVIDSKVKILDEIKPGTSSLQS-SPRLNASDNVQSSTVN 134
S T I+K+ G+ D K + E K + QS + ++ DN + V+
Sbjct: 1587 SNTDVIMKNDSGQHTDKNSKEIQEKKDNDNKDQSKATTIDGDDNSSNIKVD 1637
>MGI|MGI:1933196 [details] [associations]
symbol:Rad54l2 "RAD54 like 2 (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1933196 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 GO:GO:0003712 HSSP:Q97XQ5
CTD:23132 eggNOG:COG0553 HOGENOM:HOG000168429 HOVERGEN:HBG104283
KO:K10876 OrthoDB:EOG4X6C7G InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AJ132389 EMBL:BC133714 EMBL:AK143506
IPI:IPI00118760 RefSeq:NP_109655.2 UniGene:Mm.246689
ProteinModelPortal:Q99NG0 SMR:Q99NG0 STRING:Q99NG0
PhosphoSite:Q99NG0 PaxDb:Q99NG0 PRIDE:Q99NG0 GeneID:81000
KEGG:mmu:81000 UCSC:uc009rko.1 InParanoid:Q99NG0 NextBio:350334
CleanEx:MM_RAD54L2 Genevestigator:Q99NG0 Uniprot:Q99NG0
Length = 1466
Score = 247 (92.0 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 59/173 (34%), Positives = 95/173 (54%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D++ICDEGHR+KN ++ + + + R+R++L+G PLQN+L E++ + DF P LG+
Sbjct: 457 DVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTR 516
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
+EF FE PIL + +ST L RS L GF+ RR V L +K E
Sbjct: 517 QEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 576
Query: 623 LLVCRATPLQQSLYLRCVE-YWDARASRDSHLSVTHALR---KICNHPGLVQQ 671
+++ R + +Q+ LY + ++ + D S L+ A KI NHP ++ +
Sbjct: 577 VILVRLSQIQRDLYTQFMDRFRDCGTSGWLGLNPLKAFCVCCKIWNHPDVLYE 629
Score = 151 (58.2 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 54/160 (33%), Positives = 74/160 (46%)
Query: 370 LSRVLKPHQRQGVSFLYERVCD-LASLDLE---GAILADEMGLGKTLQCIALIWTLLRQG 425
L+R +KPHQ G+ FLY+ + + L G ILA MGLGKTLQ I+ I L R
Sbjct: 266 LARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHT 325
Query: 426 PYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLII 485
P + VL + P + NW EF WL P +K E+ V R V I+
Sbjct: 326 P-----AKTVLAIVPVNTLQNWLAEFNMWLPAPEALP----ADSKPEE-VQPRFFKVHIL 375
Query: 486 SYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+ E A + V ++ EG L G ++Y L+T
Sbjct: 376 NDEHKTVASRAKVTADW----VSEGGVLLMGY-EMYRLLT 410
Score = 52 (23.4 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCP 222
VL + P + NW EF WL P
Sbjct: 330 VLAIVPVNTLQNWLAEFNMWLPAPEALP 357
Score = 40 (19.1 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 39 EPGGTEVSEAQNSNHA 54
E GGT V++A N + A
Sbjct: 228 EKGGTHVNDALNQHDA 243
Score = 40 (19.1 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 555 NPGVLGSLREFRKNFEEPIL 574
NP V G L + F +P+L
Sbjct: 1371 NPSVPGMLPSYSLPFSQPLL 1390
>UNIPROTKB|G3N326 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:DAAA02057908
Ensembl:ENSBTAT00000063921 Uniprot:G3N326
Length = 934
Score = 331 (121.6 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 102/323 (31%), Positives = 158/323 (48%)
Query: 356 PSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
P G L V + +L+ R+ + + + L G ILADEMGLGKT+Q I
Sbjct: 586 PKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIQTI 644
Query: 416 ALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KA 471
+L+ L +G +G P LI+ P+S+ NW E K+W ++ Y+ QK K
Sbjct: 645 SLLAHLACEKGNWG-PH----LIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKR 699
Query: 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ + V I SY+++++ +Q + LI DE +KN KS+ ++ + N ++
Sbjct: 700 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQR 759
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+LL+GTPLQN L E + L F P V S REF++ F P+ E + E
Sbjct: 760 RLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-----GMIEGSQEYNEG 814
Query: 592 RSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-R 649
+L K F+LRR DV+ + K E ++ CR + Q+ LY + + +
Sbjct: 815 LVKRLHKVLRPFLLRRVKVDVEKQM-PKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLA 873
Query: 650 DSH-LSVTHAL---RKICNHPGL 668
H +SV + L RK+CNHP L
Sbjct: 874 TGHFMSVINILMQLRKVCNHPNL 896
>MGI|MGI:2444036 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
Pfam:PF00176 MGI:MGI:2444036 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AC136146 EMBL:AC122417 IPI:IPI00988884
ProteinModelPortal:E9Q9V7 SMR:E9Q9V7 Ensembl:ENSMUST00000066582
OMA:VIQDHQA Bgee:E9Q9V7 Uniprot:E9Q9V7
Length = 936
Score = 331 (121.6 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 102/323 (31%), Positives = 158/323 (48%)
Query: 356 PSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
P G L V + +L+ R+ + + + L G ILADEMGLGKT+Q I
Sbjct: 588 PKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIQTI 646
Query: 416 ALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KA 471
+L+ L +G +G P LI+ P+S+ NW E K+W ++ Y+ QK K
Sbjct: 647 SLLAHLACEKGNWG-PH----LIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKR 701
Query: 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ + V I SY+++++ +Q + LI DE +KN KS+ ++ + N ++
Sbjct: 702 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQR 761
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+LL+GTPLQN L E + L F P V S REF++ F P+ E + E
Sbjct: 762 RLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-----GMIEGSQEYNEG 816
Query: 592 RSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-R 649
+L K F+LRR DV+ + K E ++ CR + Q+ LY + + +
Sbjct: 817 LVKRLHKVLRPFLLRRVKVDVEKQM-PKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLA 875
Query: 650 DSH-LSVTHAL---RKICNHPGL 668
H +SV + L RK+CNHP L
Sbjct: 876 TGHFMSVINILMQLRKVCNHPNL 898
>WB|WBGene00006961 [details] [associations]
symbol:xnp-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0040025 "vulval development" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006915 GO:GO:0008406
GO:GO:0003677 GO:GO:0006281 GO:GO:0040035 GO:GO:0004386
GO:GO:0040025 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AF134186 EMBL:FO080106 PIR:T34036
RefSeq:NP_001020958.1 ProteinModelPortal:Q9U7E0 SMR:Q9U7E0
STRING:Q9U7E0 PaxDb:Q9U7E0 GeneID:172077 KEGG:cel:CELE_B0041.7
UCSC:B0041.7 CTD:172077 WormBase:B0041.7 HOGENOM:HOG000199608
InParanoid:Q9U7E0 KO:K10779 NextBio:873923 Uniprot:Q9U7E0
Length = 1359
Score = 201 (75.8 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 56/179 (31%), Positives = 88/179 (49%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D+++CDE H+LKN S L + M + ++RI L+GTPLQN+L E+ + +F PG+LG+
Sbjct: 631 DMVVCDEAHKLKNDDSALSKCMVKILTKRRICLTGTPLQNNLMEYHCMVNFVKPGLLGTK 690
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
EF F I R+ +++ + S + R L + R+ V + K+E
Sbjct: 691 TEFANRFVNIINRGRTKDASPLEVSFMKRRCHVLYDHLKKCVDRKDYRVLTEAIPPKQEY 750
Query: 623 LLVCRATPLQQSLYLRCVE--YWDARASRDSHLSVTHALRKICNHP-GLVQQPDMMEEE 678
++ R T Q +LY + D+ S+ L H +I HP LV ME E
Sbjct: 751 VINVRQTERQCALYNAFLNDIVGDSGLSKRL-LPDYHMFSRIWTHPYQLVLHEQRMERE 808
Score = 200 (75.5 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 48/114 (42%), Positives = 65/114 (57%)
Query: 345 VMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCD-LASLDLEGA--I 401
V++ + S KP V V L R+LKPHQ G+ F+Y+ C+ L LD EG+ I
Sbjct: 437 VLDPDSSTVDEESKKP---VEVHNSLVRILKPHQAHGIQFMYDCACESLDRLDTEGSGGI 493
Query: 402 LADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL 455
LA MGLGKTLQ I + T+L G ++VL+V P ++ NW EF+KWL
Sbjct: 494 LAHCMGLGKTLQVITFLHTVLMHEKIGEKC-KRVLVVVPKNVIINWFKEFQKWL 546
Score = 71 (30.1 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWL 215
RVL+V P ++ NW EF+KWL
Sbjct: 525 RVLVVVPKNVIINWFKEFQKWL 546
Score = 37 (18.1 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 19 DQEEQFDSTLSKENHNYVYPEPGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQ 78
D EE+ SK++ E E E ++ + S ++ K K+ S +
Sbjct: 69 DDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSE 128
Query: 79 D 79
D
Sbjct: 129 D 129
Score = 37 (18.1 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 263 DLLICDEKSLLK 274
D+++CDE LK
Sbjct: 631 DMVVCDEAHKLK 642
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 349 (127.9 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 105/311 (33%), Positives = 159/311 (51%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGPYG 428
L L+ +Q G+ +L + L G ILADEMGLGKT+ IAL+ L +G +G
Sbjct: 532 LKHSLREYQHIGLDWLVT----MYEKKLNG-ILADEMGLGKTIMTIALLAHLACDKGIWG 586
Query: 429 MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KAEDYVYSRVSPVLII 485
P LIV P+S+ NW EF KW ++ Y + K K + ++ V I
Sbjct: 587 -PH----LIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCIT 641
Query: 486 SYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
+Y ++I+ + ++ LI DE H +KN KS+ ++ + N ++RILL+GTPLQNDL
Sbjct: 642 TYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLM 701
Query: 546 EFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFIL 605
E + L F P V S +EF+ F PI E Q+ + + +L F+L
Sbjct: 702 ELWSLMHFLMPHVFQSHQEFKDWFCNPIA-----GMVEGQEKINKEVIDRLHNVLRPFLL 756
Query: 606 RRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSH-----LSVTHAL 659
RR DV+ L SK E ++ CR + Q++LY + + +A+ S +S+ L
Sbjct: 757 RRLKRDVEKQL-PSKHEHVIFCRLSKRQRNLYEDFIASTETQATLTSGSFFGMISIIMQL 815
Query: 660 RKICNHPGLVQ 670
RK+CNHP L +
Sbjct: 816 RKVCNHPDLFE 826
Score = 38 (18.4 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 268 DEKSLLKPPSGNSP-GNDSGIPSLPRKSD 295
+E++ PP NS G +SG P L D
Sbjct: 186 EERAEQIPPEINSSAGLESGSPELDEDYD 214
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 334 (122.6 bits), Expect = 2.6e-26, P = 2.6e-26
Identities = 105/323 (32%), Positives = 164/323 (50%)
Query: 358 GKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL 417
GK L + + + L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +
Sbjct: 1243 GKKLENYKIPVPIKAELRKYQQDGVNWL----AFLNKYKLHG-ILCDDMGLGKTLQSICI 1297
Query: 418 IWT--LLRQGPYGMP-VIRKV----LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QK 468
+ LR Y ++ V L+V P +LT +W DE K+ + P H
Sbjct: 1298 LAGDHCLRAQEYARTKLVDSVPLPSLVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPT 1357
Query: 469 NKAE-DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL 527
+A Y R + +++ SY+++ + +F+ I DEGH +KNGK+KL + + L
Sbjct: 1358 ERARLQYQVKRHN-LIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQL 1416
Query: 528 NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSP-NSTEAQK 586
RI+LSGTP+QN++ E + L DF PG LG+ R+F + +PIL SR +S+ Q+
Sbjct: 1417 TANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQE 1476
Query: 587 SLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDAR 646
++G L L ++ F+LRR + L K C +PLQ LY ++ +R
Sbjct: 1477 AVGVLAMEALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCVLSPLQVQLY---EDFAKSR 1533
Query: 647 ASRDSHLSVTH-ALRKICNHPGL 668
A D +V+ +LR+ P L
Sbjct: 1534 AKCDIDETVSSISLREETEKPKL 1556
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 327 (120.2 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
Identities = 97/310 (31%), Positives = 153/310 (49%)
Query: 358 GKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL 417
GK L + + ++ L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +
Sbjct: 1250 GKKLENYKIPVPINAELRKYQQDGVNWL----AFLNKYKLHG-ILCDDMGLGKTLQSICI 1304
Query: 418 IWT--LLRQGPYGMPVIRKV-----LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK 470
+ R Y + + L+V P +LT +W DE K+ + P H
Sbjct: 1305 LAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPT 1364
Query: 471 AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528
+ +V +++ SY+++ + +F+ I DEGH +KNGK+KL + + L
Sbjct: 1365 ERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLT 1424
Query: 529 IRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL 588
RI+LSGTP+QN++ E + L DF PG LG+ R+F + +PIL SR S+ ++
Sbjct: 1425 ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEA 1484
Query: 589 GELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS 648
G L L ++ F+LRR + L K C +PLQ LY ++ +RA
Sbjct: 1485 GVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLY---EDFAKSRAK 1541
Query: 649 RDSHLSVTHA 658
D +V+ A
Sbjct: 1542 CDVDETVSSA 1551
Score = 59 (25.8 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 659 LRKICNHPGLVQQPDMME 676
LRK+CNHP LV P E
Sbjct: 1575 LRKLCNHPALVLTPQHPE 1592
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 327 (120.2 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
Identities = 97/310 (31%), Positives = 153/310 (49%)
Query: 358 GKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL 417
GK L + + ++ L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +
Sbjct: 1251 GKKLENYEIPVPINAELRKYQQDGVNWL----AFLNKYKLHG-ILCDDMGLGKTLQSICI 1305
Query: 418 IWT--LLRQGPYGMPVIRKV-----LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK 470
+ R Y + + L+V P +LT +W DE K+ + P H
Sbjct: 1306 LAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPT 1365
Query: 471 AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528
+ +V +++ SY+++ + +F+ I DEGH +KNGK+KL + + L
Sbjct: 1366 ERVRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLT 1425
Query: 529 IRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL 588
RI+LSGTP+QN++ E + L DF PG LG+ R+F + +PIL SR S+ ++
Sbjct: 1426 ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEA 1485
Query: 589 GELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS 648
G L L ++ F+LRR + L K C +PLQ LY ++ +RA
Sbjct: 1486 GVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLY---EDFAKSRAK 1542
Query: 649 RDSHLSVTHA 658
D +V+ A
Sbjct: 1543 CDVDETVSSA 1552
Score = 59 (25.8 bits), Expect = 3.0e-26, Sum P(2) = 3.0e-26
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 659 LRKICNHPGLVQQPDMME 676
LRK+CNHP LV P E
Sbjct: 1576 LRKLCNHPALVLTPQHPE 1593
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 327 (120.2 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 97/310 (31%), Positives = 153/310 (49%)
Query: 358 GKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL 417
GK L + + ++ L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +
Sbjct: 1250 GKKLENYKIPVPINAELRKYQQDGVNWL----AFLNKYKLHG-ILCDDMGLGKTLQSICI 1304
Query: 418 IWT--LLRQGPYGMPVIRKV-----LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK 470
+ R Y + + L+V P +LT +W DE K+ + P H
Sbjct: 1305 LAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPT 1364
Query: 471 AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528
+ +V +++ SY+++ + +F+ I DEGH +KNGK+KL + + L
Sbjct: 1365 ERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLT 1424
Query: 529 IRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL 588
RI+LSGTP+QN++ E + L DF PG LG+ R+F + +PIL SR S+ ++
Sbjct: 1425 ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEA 1484
Query: 589 GELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS 648
G L L ++ F+LRR + L K C +PLQ LY ++ +RA
Sbjct: 1485 GVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLY---EDFAKSRAK 1541
Query: 649 RDSHLSVTHA 658
D +V+ A
Sbjct: 1542 CDVDETVSSA 1551
Score = 59 (25.8 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 659 LRKICNHPGLVQQPDMME 676
LRK+CNHP LV P E
Sbjct: 1575 LRKLCNHPALVLTPQHPE 1592
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 326 (119.8 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 97/310 (31%), Positives = 153/310 (49%)
Query: 358 GKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL 417
GK L + + ++ L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +
Sbjct: 1246 GKKLENYKIPVPINAELRKYQQDGVNWL----AFLNKYKLHG-ILCDDMGLGKTLQSICI 1300
Query: 418 IWT--LLRQGPYGMPVIRKV-----LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK 470
+ R Y + + L+V P +LT +W DE K+ + P H
Sbjct: 1301 LAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPT 1360
Query: 471 AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528
+ +V +++ SY+++ + +F+ I DEGH +KNGK+KL + + L
Sbjct: 1361 ERIRLQHQVKRHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLT 1420
Query: 529 IRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL 588
RI+LSGTP+QN++ E + L DF PG LG+ R+F + +PIL SR S+ ++
Sbjct: 1421 ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEA 1480
Query: 589 GELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS 648
G L L ++ F+LRR + L K C +PLQ LY ++ +RA
Sbjct: 1481 GVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLY---EDFAKSRAK 1537
Query: 649 RDSHLSVTHA 658
D +V+ A
Sbjct: 1538 CDVDETVSSA 1547
Score = 59 (25.8 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 659 LRKICNHPGLVQQPDMME 676
LRK+CNHP LV P E
Sbjct: 1571 LRKLCNHPALVLTPQHPE 1588
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 337 (123.7 bits), Expect = 4.2e-26, Sum P(2) = 4.2e-26
Identities = 110/379 (29%), Positives = 190/379 (50%)
Query: 309 ESTAETLQCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDG 368
+S A +Q Q + ++ ++ R I P V+ D + E +N + + +VT
Sbjct: 716 DSLALAVQSQQKEAQDNLAYSGRAI--EPASVEPLDDEKREKIDYYNVAHRIKEEVTKQP 773
Query: 369 --FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP 426
+ LK +Q +G+ ++ L + L G ILADEMGLGKT+Q I+L+ L+
Sbjct: 774 SILVGGTLKEYQLKGLQWMVS----LFNNHLNG-ILADEMGLGKTIQTISLLTYLVEVKK 828
Query: 427 YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH--VNQKNKAEDYVYSRVSPVLI 484
P L++ P S +NWN EF+KW + Y NQ+ + + + +++
Sbjct: 829 IPGPF----LVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVL 884
Query: 485 ISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT-GLNIRKRILLSGTPLQND 543
++E +I+ + ++ +I DEGHR+KN SKL E +T + R++L+GTPLQN+
Sbjct: 885 TTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNN 944
Query: 544 LQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGF 603
L E + L +F P + S++ F + F P + + E + L +L K F
Sbjct: 945 LPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKVLRPF 1004
Query: 604 ILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSH----LSVTHA 658
+LRR DV+ L N K E ++ C+++ LQ LY + + Y A ++ +++ +A
Sbjct: 1005 LLRRLKKDVEKDLPN-KVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTIKNA 1063
Query: 659 ------LRKICNHPGLVQQ 671
L+KICNHP + ++
Sbjct: 1064 NNQIMQLKKICNHPFVYEE 1082
Score = 46 (21.3 bits), Expect = 4.2e-26, Sum P(2) = 4.2e-26
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 277 SGNSPGNDSGIPSLPRKSDSGIGSLPC--KRPLEESTAETLQ 316
S ++P + G P +P K G P K+P ++ E Q
Sbjct: 308 SNSNPKSTGGTPEIPEKKKGKRGPKPKNPKKPTKKQLREEEQ 349
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 337 (123.7 bits), Expect = 4.2e-26, Sum P(2) = 4.2e-26
Identities = 110/379 (29%), Positives = 190/379 (50%)
Query: 309 ESTAETLQCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDG 368
+S A +Q Q + ++ ++ R I P V+ D + E +N + + +VT
Sbjct: 716 DSLALAVQSQQKEAQDNLAYSGRAI--EPASVEPLDDEKREKIDYYNVAHRIKEEVTKQP 773
Query: 369 --FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP 426
+ LK +Q +G+ ++ L + L G ILADEMGLGKT+Q I+L+ L+
Sbjct: 774 SILVGGTLKEYQLKGLQWMVS----LFNNHLNG-ILADEMGLGKTIQTISLLTYLVEVKK 828
Query: 427 YGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH--VNQKNKAEDYVYSRVSPVLI 484
P L++ P S +NWN EF+KW + Y NQ+ + + + +++
Sbjct: 829 IPGPF----LVIVPLSTVTNWNLEFEKWAPSIKKITYKGTPNQRKVMQHDIRTGNFQLVL 884
Query: 485 ISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT-GLNIRKRILLSGTPLQND 543
++E +I+ + ++ +I DEGHR+KN SKL E +T + R++L+GTPLQN+
Sbjct: 885 TTFEYVIKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNN 944
Query: 544 LQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGF 603
L E + L +F P + S++ F + F P + + E + L +L K F
Sbjct: 945 LPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKVLRPF 1004
Query: 604 ILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSH----LSVTHA 658
+LRR DV+ L N K E ++ C+++ LQ LY + + Y A ++ +++ +A
Sbjct: 1005 LLRRLKKDVEKDLPN-KVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTIKNA 1063
Query: 659 ------LRKICNHPGLVQQ 671
L+KICNHP + ++
Sbjct: 1064 NNQIMQLKKICNHPFVYEE 1082
Score = 46 (21.3 bits), Expect = 4.2e-26, Sum P(2) = 4.2e-26
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 277 SGNSPGNDSGIPSLPRKSDSGIGSLPC--KRPLEESTAETLQ 316
S ++P + G P +P K G P K+P ++ E Q
Sbjct: 308 SNSNPKSTGGTPEIPEKKKGKRGPKPKNPKKPTKKQLREEEQ 349
>UNIPROTKB|J9PA15 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
EMBL:AAEX03004382 EMBL:AAEX03004383 EMBL:AAEX03004384
EMBL:AAEX03004387 EMBL:AAEX03004388 Ensembl:ENSCAFT00000048702
Uniprot:J9PA15
Length = 1555
Score = 331 (121.6 bits), Expect = 4.4e-26, P = 4.4e-26
Identities = 102/323 (31%), Positives = 158/323 (48%)
Query: 356 PSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
P G L V + +L+ R+ + + + L G ILADEMGLGKT+Q I
Sbjct: 602 PKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIQTI 660
Query: 416 ALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KA 471
+L+ L +G +G P LI+ P+S+ NW E K+W ++ Y+ QK K
Sbjct: 661 SLLAHLACEKGNWG-PH----LIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKR 715
Query: 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ + V I SY+++++ +Q + LI DE +KN KS+ ++ + N ++
Sbjct: 716 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQR 775
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+LL+GTPLQN L E + L F P V S REF++ F P+ E + E
Sbjct: 776 RLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-----GMIEGSQEYNEG 830
Query: 592 RSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-R 649
+L K F+LRR DV+ + K E ++ CR + Q+ LY + + +
Sbjct: 831 LVKRLHKVLRPFLLRRVKVDVEKQM-PKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLA 889
Query: 650 DSH-LSVTHAL---RKICNHPGL 668
H +SV + L RK+CNHP L
Sbjct: 890 TGHFMSVINILMQLRKVCNHPNL 912
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 329 (120.9 bits), Expect = 4.5e-26, P = 4.5e-26
Identities = 109/321 (33%), Positives = 157/321 (48%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
L+ L+ +Q QG+++L L L G ILAD+MGLGKT+Q +A + +QG
Sbjct: 658 LNATLRTYQHQGLNWLQF----LREYQLNG-ILADDMGLGKTIQTLAHLLIEKQQGRLTK 712
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY------VYSRVSPV- 482
P+ LIV P+S+ NW +E K+ T Y V NK + V + + V
Sbjct: 713 PI----LIVAPTSVIFNWANEIDKF---TPQLSYQVLHGNKRHEQFGCLEGVENGENQVD 765
Query: 483 -LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541
+I SY ++ + D +F L+ DE H +KN K+KLY+ L + ++ L+GTP++
Sbjct: 766 IIITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPME 825
Query: 542 NDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLA-KRT 600
N L EF+ +F PG LG R+F K F PI +K GEL QL +R
Sbjct: 826 NHLGEFWAQFNFLLPGFLGGQRQFTKLFRTPI-----------EKH-GELERKQLLNQRI 873
Query: 601 AGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS--------RDSH 652
FILRRT D A+ L K E + R Q LY D+R + S
Sbjct: 874 KPFILRRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLKRSQ 933
Query: 653 LSVTHAL---RKICNHPGLVQ 670
+ V AL R++CNHP L++
Sbjct: 934 IEVLDALLKLRQVCNHPKLLK 954
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 329 (120.9 bits), Expect = 4.5e-26, P = 4.5e-26
Identities = 109/321 (33%), Positives = 157/321 (48%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
L+ L+ +Q QG+++L L L G ILAD+MGLGKT+Q +A + +QG
Sbjct: 658 LNATLRTYQHQGLNWLQF----LREYQLNG-ILADDMGLGKTIQTLAHLLIEKQQGRLTK 712
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY------VYSRVSPV- 482
P+ LIV P+S+ NW +E K+ T Y V NK + V + + V
Sbjct: 713 PI----LIVAPTSVIFNWANEIDKF---TPQLSYQVLHGNKRHEQFGCLEGVENGENQVD 765
Query: 483 -LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541
+I SY ++ + D +F L+ DE H +KN K+KLY+ L + ++ L+GTP++
Sbjct: 766 IIITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPME 825
Query: 542 NDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLA-KRT 600
N L EF+ +F PG LG R+F K F PI +K GEL QL +R
Sbjct: 826 NHLGEFWAQFNFLLPGFLGGQRQFTKLFRTPI-----------EKH-GELERKQLLNQRI 873
Query: 601 AGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS--------RDSH 652
FILRRT D A+ L K E + R Q LY D+R + S
Sbjct: 874 KPFILRRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDSRLKDIIADKGLKRSQ 933
Query: 653 LSVTHAL---RKICNHPGLVQ 670
+ V AL R++CNHP L++
Sbjct: 934 IEVLDALLKLRQVCNHPKLLK 954
>UNIPROTKB|F6XHF3 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
Ensembl:ENSCAFT00000026363 EMBL:AAEX03004382 EMBL:AAEX03004383
EMBL:AAEX03004384 EMBL:AAEX03004387 EMBL:AAEX03004388
Uniprot:F6XHF3
Length = 1823
Score = 331 (121.6 bits), Expect = 5.5e-26, P = 5.5e-26
Identities = 102/323 (31%), Positives = 158/323 (48%)
Query: 356 PSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
P G L V + +L+ R+ + + + L G ILADEMGLGKT+Q I
Sbjct: 602 PKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIQTI 660
Query: 416 ALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KA 471
+L+ L +G +G P LI+ P+S+ NW E K+W ++ Y+ QK K
Sbjct: 661 SLLAHLACEKGNWG-PH----LIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKR 715
Query: 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ + V I SY+++++ +Q + LI DE +KN KS+ ++ + N ++
Sbjct: 716 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQR 775
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+LL+GTPLQN L E + L F P V S REF++ F P+ E + E
Sbjct: 776 RLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-----GMIEGSQEYNEG 830
Query: 592 RSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-R 649
+L K F+LRR DV+ + K E ++ CR + Q+ LY + + +
Sbjct: 831 LVKRLHKVLRPFLLRRVKVDVEKQM-PKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLA 889
Query: 650 DSH-LSVTHAL---RKICNHPGL 668
H +SV + L RK+CNHP L
Sbjct: 890 TGHFMSVINILMQLRKVCNHPNL 912
>UNIPROTKB|E2R6G6 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 Ensembl:ENSCAFT00000026363
Uniprot:E2R6G6
Length = 1825
Score = 331 (121.6 bits), Expect = 5.5e-26, P = 5.5e-26
Identities = 102/323 (31%), Positives = 158/323 (48%)
Query: 356 PSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
P G L V + +L+ R+ + + + L G ILADEMGLGKT+Q I
Sbjct: 602 PKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIQTI 660
Query: 416 ALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KA 471
+L+ L +G +G P LI+ P+S+ NW E K+W ++ Y+ QK K
Sbjct: 661 SLLAHLACEKGNWG-PH----LIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKR 715
Query: 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ + V I SY+++++ +Q + LI DE +KN KS+ ++ + N ++
Sbjct: 716 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQR 775
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+LL+GTPLQN L E + L F P V S REF++ F P+ E + E
Sbjct: 776 RLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-----GMIEGSQEYNEG 830
Query: 592 RSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-R 649
+L K F+LRR DV+ + K E ++ CR + Q+ LY + + +
Sbjct: 831 LVKRLHKVLRPFLLRRVKVDVEKQM-PKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLA 889
Query: 650 DSH-LSVTHAL---RKICNHPGL 668
H +SV + L RK+CNHP L
Sbjct: 890 TGHFMSVINILMQLRKVCNHPNL 912
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 326 (119.8 bits), Expect = 5.9e-26, P = 5.9e-26
Identities = 99/282 (35%), Positives = 143/282 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LK +Q G+ +L L L G ILADEMGLGKTLQCI+ + L+ G G P
Sbjct: 175 LKDYQMDGLEWLIT----LFQNGLNG-ILADEMGLGKTLQCISFLSHLIENGING-PF-- 226
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY---VYSRVSPVLIISYEML 490
L+V P S SNW +E +K+ ++ Y + K + D + +++ SYE+
Sbjct: 227 --LVVVPVSTLSNWYNEIRKFAPKIKVTKY-IGTKQERNDIDLLQQQETTNIILTSYEIS 283
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550
IR + +V + LI DEGHRLKN + L +++ LN+ R+LL+GTPLQN+L E + L
Sbjct: 284 IRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSL 343
Query: 551 NDFANPGVLGSLREFRK--NFEEPI-----LESRSPNSTEAQKSLGELRSSQ-LAKRT-- 600
+F P + L F++ NF+E LE + E K+L +L + L K
Sbjct: 344 LNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLIKNLHT 403
Query: 601 --AGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
F+LRR L K+E LL T LQ+ +Y V
Sbjct: 404 ILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAV 445
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 326 (119.8 bits), Expect = 5.9e-26, P = 5.9e-26
Identities = 99/282 (35%), Positives = 143/282 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LK +Q G+ +L L L G ILADEMGLGKTLQCI+ + L+ G G P
Sbjct: 175 LKDYQMDGLEWLIT----LFQNGLNG-ILADEMGLGKTLQCISFLSHLIENGING-PF-- 226
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY---VYSRVSPVLIISYEML 490
L+V P S SNW +E +K+ ++ Y + K + D + +++ SYE+
Sbjct: 227 --LVVVPVSTLSNWYNEIRKFAPKIKVTKY-IGTKQERNDIDLLQQQETTNIILTSYEIS 283
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550
IR + +V + LI DEGHRLKN + L +++ LN+ R+LL+GTPLQN+L E + L
Sbjct: 284 IRDFNKLVKINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSL 343
Query: 551 NDFANPGVLGSLREFRK--NFEEPI-----LESRSPNSTEAQKSLGELRSSQ-LAKRT-- 600
+F P + L F++ NF+E LE + E K+L +L + L K
Sbjct: 344 LNFILPDIFHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLIKNLHT 403
Query: 601 --AGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
F+LRR L K+E LL T LQ+ +Y V
Sbjct: 404 ILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAV 445
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 339 (124.4 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 101/305 (33%), Positives = 159/305 (52%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LK +Q +G+ ++ L + L G ILADEMGLGKT+Q I+LI L+ + P
Sbjct: 417 LKEYQLRGLQWMIS----LYNNHLNG-ILADEMGLGKTIQTISLITHLIEKKRQNGPF-- 469
Query: 434 KVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKA-EDYVYSRVSPVLIISYEMLI 491
L++ P S +NW EF++W + ++ Q KA V VL+ +YE +I
Sbjct: 470 --LVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYII 527
Query: 492 RAYQTIVDTEFDLLICDEGHRLKNGKSKLYE-LMTGLNIRKRILLSGTPLQNDLQEFFYL 550
+ + ++ +I DEGHR+KN +SKL L T + R R++L+GTPLQN+L E + L
Sbjct: 528 KDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWAL 587
Query: 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS- 609
+F P + S++ F + F P + + E + L +L K F+LRR
Sbjct: 588 LNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKK 647
Query: 610 DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYW-----DARASRDSHLSVTHA---LRK 661
DV+A L + K E ++ C+ + LQQ LY + ++ DA+ + + + L+K
Sbjct: 648 DVEAELPD-KVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGIKGLQNTVMQLKK 706
Query: 662 ICNHP 666
ICNHP
Sbjct: 707 ICNHP 711
Score = 38 (18.4 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 49 QNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLE 83
QNS V R F PSAK+ + + Q + E
Sbjct: 119 QNSKVDGKVRRDFGSCQITPSAKQQRKYLQYQISE 153
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 328 (120.5 bits), Expect = 7.7e-26, P = 7.7e-26
Identities = 113/379 (29%), Positives = 177/379 (46%)
Query: 309 ESTAETLQCNQINSHL-SVTHALRKICNHPGLVQ----QPDVMEEEGQWKHNPSG---KP 360
+ T T Q NS L S++ A+R N ++ QP EE + + K
Sbjct: 397 KDTRITQLLRQTNSFLDSLSEAVRAQQNEAKILHGEEVQPITDEEREKTDYYEVAHRIKE 456
Query: 361 LVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT 420
+D + LK +Q +G+ ++ L + L G ILADEMGLGKT+Q I+LI T
Sbjct: 457 KIDKQPSILVGGTLKEYQLRGLEWMVS----LYNNHLNG-ILADEMGLGKTIQSISLI-T 510
Query: 421 LLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH--VNQKNKAEDYVYSR 478
L + I L++ P S +NW EF+KW Y NQ++ + +
Sbjct: 511 YLYEVKKD---IGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRVG 567
Query: 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKL-YELMTGLNIRKRILLSG 537
VL+ +YE +I+ + ++ +I DEGHR+KN +SKL + + R R++L+G
Sbjct: 568 NFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTG 627
Query: 538 TPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLA 597
TPLQN+L E + L +F P + S + F F P + + E + L +L
Sbjct: 628 TPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLH 687
Query: 598 KRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEY-------WDARASRD 650
K F+LRR L K E ++ C+ + LQQ LY + +++ A++
Sbjct: 688 KVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEGATKG 747
Query: 651 SHLSVTHA---LRKICNHP 666
+ + LRKICNHP
Sbjct: 748 GIKGLNNKIMQLRKICNHP 766
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 328 (120.5 bits), Expect = 9.3e-26, P = 9.3e-26
Identities = 103/338 (30%), Positives = 180/338 (53%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
NPS + D+ + LK +Q +G+++L +L + G ILADEMGLGKT+Q
Sbjct: 501 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWL----ANLYEQGING-ILADEMGLGKTVQS 555
Query: 415 IALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN-KAE 472
IAL+ L R+ +G P LI++P+S +NW+ EF +++ ++ PY N + K +
Sbjct: 556 IALLAHLAERENIWG-PF----LIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKKK 610
Query: 473 DYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIR 530
+Y++ +P V+I SY+++++ + ++ ++ DE LK+ S ++++ R
Sbjct: 611 KTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCR 670
Query: 531 KRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGE 590
R+LL+GTP+QN + E + L F P + S EF + F + I ES + N + ++ E
Sbjct: 671 NRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI-ESHAENKS----AIDE 725
Query: 591 LRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY--LR---CVE--- 641
+ S+L F+LRR DV+ L + K E L+ C+ T Q+ LY L+ +E
Sbjct: 726 NQLSRLHMILKPFMLRRIKKDVENEL-SDKIEILMYCQLTSRQKLLYQALKNKISIEDLL 784
Query: 642 ------YWDARASRDSHLSVTHALRKICNHPGLVQQPD 673
A+ + S +++ RK+CNHP L ++ +
Sbjct: 785 QSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 822
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 327 (120.2 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 96/319 (30%), Positives = 162/319 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LK +Q +G+ ++ L + +L G ILADEMGLGKT+Q I+LI ++ + P
Sbjct: 537 LKEYQMKGLQWMIS----LYNNNLNG-ILADEMGLGKTIQTISLITHIIERKRNNGPF-- 589
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH--VNQKNKAEDYVYSRVSPVLIISYEMLI 491
L++ P S +NWN EF+KW Y N + + + + VL+ +YE +I
Sbjct: 590 --LVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQQQQNIRWGNFQVLLTTYEYII 647
Query: 492 RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL-NIRKRILLSGTPLQNDLQEFFYL 550
+ + ++ +I DEGHR+KN +SKL ++ R R++L+GTPLQN+L E + L
Sbjct: 648 KDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPELWAL 707
Query: 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS- 609
+F P + S++ F + F P + + + + L +L K F+LRR
Sbjct: 708 LNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLLVIRRLHKVLRPFLLRRLKK 767
Query: 610 DVQASLLNSKRETLLVCRATPLQQSLYLRCVEY-----WDARASRDSHLSVTHAL---RK 661
DV+ L + K+E ++ CR + LQ L + + D + + +++ L RK
Sbjct: 768 DVEKDLPD-KQERVIKCRFSALQAKLNKQLATHNKMVVSDGKGGKVGMRGLSNMLMQLRK 826
Query: 662 ICNHPGLVQQPDMMEEEGQ 680
+CNHP + +Q + G+
Sbjct: 827 LCNHPFVFEQVEDQVNPGR 845
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 331 (121.6 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 102/323 (31%), Positives = 158/323 (48%)
Query: 356 PSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
P G L V + +L+ R+ + + + L G ILADEMGLGKT+Q I
Sbjct: 596 PKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIQTI 654
Query: 416 ALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KA 471
+L+ L +G +G P LI+ P+S+ NW E K+W ++ Y+ QK K
Sbjct: 655 SLLAHLACEKGNWG-PH----LIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKR 709
Query: 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ + V I SY+++++ +Q + LI DE +KN KS+ ++ + N ++
Sbjct: 710 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQR 769
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+LL+GTPLQN L E + L F P V S REF++ F P+ E + E
Sbjct: 770 RLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-----GMIEGSQEYNEG 824
Query: 592 RSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-R 649
+L K F+LRR DV+ + K E ++ CR + Q+ LY + + +
Sbjct: 825 LVKRLHKVLRPFLLRRVKVDVEKQM-PKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLA 883
Query: 650 DSH-LSVTHAL---RKICNHPGL 668
H +SV + L RK+CNHP L
Sbjct: 884 TGHFMSVINILMQLRKVCNHPNL 906
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 331 (121.6 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 102/323 (31%), Positives = 158/323 (48%)
Query: 356 PSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
P G L V + +L+ R+ + + + L G ILADEMGLGKT+Q I
Sbjct: 604 PKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIQTI 662
Query: 416 ALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KA 471
+L+ L +G +G P LI+ P+S+ NW E K+W ++ Y+ QK K
Sbjct: 663 SLLAHLACEKGNWG-PH----LIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKR 717
Query: 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ + V I SY+++++ +Q + LI DE +KN KS+ ++ + N ++
Sbjct: 718 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQR 777
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+LL+GTPLQN L E + L F P V S REF++ F P+ E + E
Sbjct: 778 RLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-----GMIEGSQEYNEG 832
Query: 592 RSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-R 649
+L K F+LRR DV+ + K E ++ CR + Q+ LY + + +
Sbjct: 833 LVKRLHKVLRPFLLRRVKVDVEKQM-PKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLA 891
Query: 650 DSH-LSVTHAL---RKICNHPGL 668
H +SV + L RK+CNHP L
Sbjct: 892 TGHFMSVINILMQLRKVCNHPNL 914
>UNIPROTKB|E1BEK4 [details] [associations]
symbol:Bt.109773 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 OMA:HNLTTPF InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
EMBL:DAAA02054392 EMBL:DAAA02054393 EMBL:DAAA02054394
IPI:IPI00841842 Ensembl:ENSBTAT00000045730 Uniprot:E1BEK4
Length = 1470
Score = 234 (87.4 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 58/173 (33%), Positives = 94/173 (54%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D++ICDEGHR+KN ++ + + + R+R++L+G PLQN+L E++ + DF P LG+
Sbjct: 461 DVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTR 520
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
+EF FE PIL + +ST L RS L F+ RR V L +K E
Sbjct: 521 QEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLELFLSRRGHTVLKIHLPAKEEN 580
Query: 623 LLVCRATPLQQSLYLRCVE-YWDARASRDSHLSVTHALR---KICNHPGLVQQ 671
+++ R + +Q+ LY + ++ + D S L+ A KI NHP ++ +
Sbjct: 581 VILVRLSQIQRDLYTQFMDRFRDCGNSGWLGLNPLKAFCVCCKIWNHPDVLYE 633
Score = 148 (57.2 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 38/97 (39%), Positives = 48/97 (49%)
Query: 370 LSRVLKPHQRQGVSFLYERVCD-LASLDLE---GAILADEMGLGKTLQCIALIWTLLRQG 425
L+R +KPHQ G+ FLY+ + + L G ILA MGLGKTLQ I+ I L R
Sbjct: 268 LARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHT 327
Query: 426 PYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCP 462
P + VL + P + NW EF WL P
Sbjct: 328 P-----AKTVLAIVPVNTLQNWLAEFNMWLPAPEALP 359
Score = 52 (23.4 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCP 222
VL + P + NW EF WL P
Sbjct: 332 VLAIVPVNTLQNWLAEFNMWLPAPEALP 359
Score = 41 (19.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 555 NPGVLGSLREFRKNFEEPIL 574
NP V G L + F +P+L
Sbjct: 1375 NPSVTGILPSYSLPFSQPLL 1394
>RGD|1564130 [details] [associations]
symbol:Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, (Mot1 homolog, S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1564130 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AC096310
IPI:IPI00370629 PRIDE:F1LW16 Ensembl:ENSRNOT00000024465
Uniprot:F1LW16
Length = 1848
Score = 328 (120.5 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 97/310 (31%), Positives = 153/310 (49%)
Query: 358 GKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL 417
GK L + + ++ L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +
Sbjct: 1249 GKKLENYKIPVPINAELRKYQQDGVNWL----AFLNKYKLHG-ILCDDMGLGKTLQSICI 1303
Query: 418 IWT--LLRQGPYGMPVIRKV-----LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK 470
+ R Y + + L+V P +LT +W DE K+ + P H
Sbjct: 1304 LAGDHCQRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPT 1363
Query: 471 AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLN 528
+ +V +++ SY+++ + +F+ I DEGH +KNGK+KL + + L
Sbjct: 1364 ERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLT 1423
Query: 529 IRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL 588
RI+LSGTP+QN++ E + L DF PG LG+ R+F + +PIL SR S+ ++
Sbjct: 1424 ANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEA 1483
Query: 589 GELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS 648
G L L ++ F+LRR + L K C +PLQ LY ++ +RA
Sbjct: 1484 GVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLY---EDFAKSRAK 1540
Query: 649 RDSHLSVTHA 658
D +V+ A
Sbjct: 1541 CDVDETVSSA 1550
Score = 59 (25.8 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 659 LRKICNHPGLVQQPDMME 676
LRK+CNHP LV P E
Sbjct: 1574 LRKLCNHPALVLTPQHPE 1591
Score = 39 (18.8 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 208 NDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLII 245
N E K L ++ +H+N K+ + R+S L+I
Sbjct: 700 NQEIKPAESLGQLLLFHLNSKSALQ-----RISAALVI 732
>UNIPROTKB|F1RPI9 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:CU928419
EMBL:CU693469 EMBL:CU928840 EMBL:FP102832
Ensembl:ENSSSCT00000013595 OMA:GPDIVIC ArrayExpress:F1RPI9
Uniprot:F1RPI9
Length = 988
Score = 238 (88.8 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 52/142 (36%), Positives = 79/142 (55%)
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ +VD D ++CDEGH LKN S + + M + R+RI+L+GTPLQN+L E+ + +F
Sbjct: 426 KALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFI 485
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
+LGS++EFR F PI + +ST + + R+ L + AG + R+
Sbjct: 486 KENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTK 545
Query: 615 LLNSKRETLLVCRATPLQQSLY 636
L K E +L R TP+Q LY
Sbjct: 546 FLPPKHEYVLAVRMTPIQCKLY 567
Score = 139 (54.0 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 49/159 (30%), Positives = 76/159 (47%)
Query: 345 VMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GA 400
V++E+ + K +PLV V + + LKPHQ GV F+++ C+ + G
Sbjct: 257 VLDEDEETK-----EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVKKTKKSPGSGC 309
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLT- 458
ILA MGLGKTLQ ++ + T+L L+V P + NW +EF+KW GL
Sbjct: 310 ILAHCMGLGKTLQVVSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLKD 366
Query: 459 -----RMCPYHVNQKNKAEDYVYSRVSP---VLIISYEM 489
++ ++ + Y+ R V+II YEM
Sbjct: 367 DEKLEKVSELATVKRPQERSYMLQRWQEDGGVMIIGYEM 405
Score = 58 (25.5 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 196 LIVTPSSLTSNWNDEFKKWL-GLT------RMCPYHVNQKNKAEDYVYSRVSP---VLII 245
L+V P + NW +EF+KW GL ++ ++ + Y+ R V+II
Sbjct: 342 LVVCPLNTALNWMNEFEKWQEGLKDDEKLEKVSELATVKRPQERSYMLQRWQEDGGVMII 401
Query: 246 SYEM 249
YEM
Sbjct: 402 GYEM 405
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 334 (122.6 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 105/367 (28%), Positives = 179/367 (48%)
Query: 338 GLVQQPDVMEE--EGQWKHNPSGKPLVDVT-VDGF-----LSRVLKPHQRQGVSFLYERV 389
G+ D+ +E EG+ + + ++D T + F + L+ +Q++GV++L
Sbjct: 1258 GIPDPEDMPQELLEGRDRERDFIQQMMDPTKIKSFDLPVTIKATLRKYQQEGVNWL---- 1313
Query: 390 CDLASLDLEGAILADEMGLGKTLQCIALIWT--LLRQGPY---GMPVIRKV--LIVTPSS 442
L L G IL D+MGLGKTLQ I ++ + +R+ + G RK+ L++ P S
Sbjct: 1314 AFLNKYHLHG-ILCDDMGLGKTLQTICIVSSDHHIREENFKETGSAEYRKLPSLVICPPS 1372
Query: 443 LTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEF 502
L +W E ++ ++ Y + + + V++ SY++ +++ ++
Sbjct: 1373 LIGHWEQEINQYAPFMKVLVYAGSPSIRIPLRGQIPDADVVVTSYDVCRNDVESLTKHDY 1432
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
+ + DEGH +KN SKL + + + R++LSGTP+QN++ E + L DF PG LG+
Sbjct: 1433 NYCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPIQNNVLELWSLFDFLMPGFLGTE 1492
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
+ F + F +PI SR+ ++ ++ G L L K+ F+LRR + S L K
Sbjct: 1493 KVFHEKFAKPIAASRNSKTSSKEQEAGALAMESLHKQVLPFMLRRLKEDVLSDLPPKIIQ 1552
Query: 623 LLVCRATPLQQSLYLRCVEYW------DARAS-RDSHLSVTHAL---RKICNHPGLV--- 669
C + LQ+ LY + D + S ++ V AL RK+CNHP LV
Sbjct: 1553 DYYCELSDLQKKLYKDFAKTQKETIKTDVQGSEKEGKTHVFQALQYMRKLCNHPALVMSE 1612
Query: 670 QQPDMME 676
Q P E
Sbjct: 1613 QHPKYAE 1619
Score = 45 (20.9 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 285 SGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQ----INSHLSVTHAL 330
S IP +P + P LE TAE + CN+ + HLS TH L
Sbjct: 868 SRIPQIPVVVQGEAEAGPGAFGLE--TAEKI-CNETFVKLKKHLSATHRL 914
Score = 39 (18.8 bits), Expect = 6.8e-25, Sum P(2) = 6.8e-25
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 325 SVTHALRKICNHPGLVQ--QPDVMEEE 349
SV L K+C+H +++ Q D E +
Sbjct: 547 SVMDLLAKLCSHKEVIEIMQQDANENK 573
>UNIPROTKB|E1C963 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:AADN02056475
EMBL:AADN02056476 EMBL:AADN02056477 IPI:IPI00581654
Ensembl:ENSGALT00000005129 OMA:THMRKNI Uniprot:E1C963
Length = 1148
Score = 239 (89.2 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 62/176 (35%), Positives = 95/176 (53%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D++ICDEGHR+KN + + + + R+R++L+G PLQN+L E++ + DF P LGS
Sbjct: 467 DVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGSR 526
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR---RTSDVQASLLNSK 619
+EF FE PIL + +ST L RS L GF+ R R +V L SK
Sbjct: 527 QEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRLPRRGHNVLKVQLPSK 586
Query: 620 RETLLVCRATPLQQSLYLRCVE-YWDARASRDSHLSVTHALR---KICNHPGLVQQ 671
E +++ R + +Q++LY + + DA S L+ A KI NHP ++ +
Sbjct: 587 EEHVILVRLSKIQRALYTEFMNRFRDAGNSGWLGLNPLKAFCVCCKIWNHPDVLYE 642
Score = 137 (53.3 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 37/110 (33%), Positives = 51/110 (46%)
Query: 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCD-LASLDLE---GAILADEMGLGKTLQCIALI 418
D+ + L+ +KPHQ G+ FLY+ + + L G ILA MGLGKT+Q I+ +
Sbjct: 269 DIFLAPQLAHAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTIQVISFL 328
Query: 419 WTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQK 468
L R + VL + P + NW EF WL P N K
Sbjct: 329 DVLFRHTE-----AKTVLAIVPVNTLQNWLAEFNMWLPAPENLPPDYNSK 373
Score = 57 (25.1 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQK 228
VL + P + NW EF WL P N K
Sbjct: 340 VLAIVPVNTLQNWLAEFNMWLPAPENLPPDYNSK 373
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 320 (117.7 bits), Expect = 3.0e-25, P = 3.0e-25
Identities = 99/319 (31%), Positives = 158/319 (49%)
Query: 360 PLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIW 419
P VDV L L+P+Q+ G+ +L L L GA+LAD+MGLGK++Q I +
Sbjct: 439 PKVDVPSS--LHATLRPYQQHGIEWLLY----LRKLGF-GALLADDMGLGKSIQTITYLL 491
Query: 420 TLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV-YSR 478
+ P LIV P+S+ NW EF+++ R+ ++ + + K E + + +
Sbjct: 492 YIKENNLQTGPA----LIVAPTSVLGNWQKEFERFAPNLRVQLHYGSNRAKGESFKDFLQ 547
Query: 479 VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGT 538
+ V++ SY + + + +D +I DE +KN +K + + L +I L+GT
Sbjct: 548 SADVVLTSYALAQLDEEELSTLCWDAVILDEAQNIKNPHTKQSKAVRNLQANHKIALTGT 607
Query: 539 PLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAK 598
P++N L E + + DF N G LGSL +F++ F PI E + G+++ Q+ +
Sbjct: 608 PMENRLAELWSIFDFINHGYLGSLGQFQRRFVSPI---------EKDRDEGKIQ--QVQR 656
Query: 599 RTAGFILRRTSDVQASLLN--SKRETLLVCRATPLQQSLY-------LRCVEYWDARASR 649
+ F+LRRT Q LN K+E C T Q SLY L+ VE R
Sbjct: 657 FISPFLLRRTKKDQTVALNLPDKQEQKAYCPLTGEQASLYEQLVQDTLQNVEGLSGIERR 716
Query: 650 DSHLSVTHALRKICNHPGL 668
L + + L++ICNHP L
Sbjct: 717 GFILLMLNKLKQICNHPAL 735
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 321 (118.1 bits), Expect = 3.3e-25, P = 3.3e-25
Identities = 104/309 (33%), Positives = 154/309 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q QG+++L L L G ILADEMGLGKTLQ I+ + LR Y +
Sbjct: 184 LRDYQVQGLNWLIS----LHENKLSG-ILADEMGLGKTLQTISFLG-YLR---YVKQIEG 234
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSPVLIISYEML 490
LI+ P S NW EF KW + H ++ +A+ + + VLI SYEM+
Sbjct: 235 PFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMV 294
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550
IR + + ++ DE HR+KN +S L +++ + R+L++GTPLQN+L E + L
Sbjct: 295 IREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWAL 354
Query: 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-S 609
+F P + G F + FE+ N++E + E+ QL F+LRR +
Sbjct: 355 LNFLLPDIFGDSELFDEWFEQ--------NNSEQDQ---EIVIQQLHSVLNPFLLRRVKA 403
Query: 610 DVQASLLNSKRETLLVCRATPLQQSLYLRCVEY-WDA-------RASRDSHLSVTHALRK 661
DV+ SLL K ET + T +Q Y +E DA R + L++ LRK
Sbjct: 404 DVEKSLL-PKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRK 462
Query: 662 ICNHPGLVQ 670
CNHP L +
Sbjct: 463 CCNHPYLFE 471
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 249 (92.7 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 64/193 (33%), Positives = 98/193 (50%)
Query: 482 VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541
+LI +Y L ++ ++ + DEGH+++N S++ L RI+LSGTP+Q
Sbjct: 443 ILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQ 502
Query: 542 NDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTA 601
N+L E + L DF PG LG+L F++ F PI N+T Q G + L +
Sbjct: 503 NNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLIS 562
Query: 602 GFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVTHA--- 658
++LRR A L K+E +L C+ T Q+S YL + D ++ +V
Sbjct: 563 PYLLRRVKADVAKDLPQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKRNVLFGIDI 622
Query: 659 LRKICNHPGLVQQ 671
LRKICNHP L+ +
Sbjct: 623 LRKICNHPDLLDR 635
Score = 125 (49.1 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 43/136 (31%), Positives = 60/136 (44%)
Query: 338 GLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDL 397
G + D+ E + P K + G + +L +Q+ V +LYE L +
Sbjct: 261 GSQRSSDLPEWRRPHPNIPDAKLNSQFKIPGEIYSLLFNYQKTCVQWLYE----LYQQNC 316
Query: 398 EGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGL 457
G I+ DEMGLGKT+Q IA I L G PV LIV P+++ W +EF+ W
Sbjct: 317 -GGIIGDEMGLGKTIQVIAFIAALHHSGLLTGPV----LIVCPATVMKQWCNEFQHWWPP 371
Query: 458 TRMCPYHVNQKNKAED 473
R H A D
Sbjct: 372 LRTVILHSMGSGMASD 387
Score = 57 (25.1 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 233
VLIV P+++ W +EF+ W R H A D
Sbjct: 349 VLIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASD 387
>UNIPROTKB|F1P0A4 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016817 GeneTree:ENSGT00680000100002 EMBL:AADN02016239
EMBL:AADN02016240 IPI:IPI00819661 Ensembl:ENSGALT00000038610
ArrayExpress:F1P0A4 Uniprot:F1P0A4
Length = 469
Score = 310 (114.2 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 102/307 (33%), Positives = 154/307 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ I+L+ + +P
Sbjct: 165 LRDYQVRGLNWLIS----LYENGING-ILADEMGLGKTLQTISLLGYMKHYR--NIPGPH 217
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW +EFK+W+ R +C + K++ +V + P V + SYE
Sbjct: 218 MVLV--PKSTLHNWMNEFKRWVPTLRAVCL--IGDKDQRAAFVRDVLLPGEWDVCVTSYE 273
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
MLI+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 274 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 333
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ + N QK + L + R F+LRR
Sbjct: 334 ALLNFLLPDVFNSSEDFDSWFD-------TNNCLGDQKLVERLH---MVLRP--FLLRRI 381
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--LSVTHALRK 661
+DV+ SL K+E + + +Q+ Y R ++ ++ D L++ LRK
Sbjct: 382 KADVEKSL-PPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRK 440
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 441 CCNHPYL 447
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 320 (117.7 bits), Expect = 4.3e-25, P = 4.3e-25
Identities = 106/342 (30%), Positives = 170/342 (49%)
Query: 341 QQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGA 400
+ +++++E KH S + + + F+ ++ +Q G+++L L + G
Sbjct: 157 EDAELLKDE---KHGGSAETVFRES-PAFIQGTMRDYQIAGLNWLIS----LHENGISG- 207
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRM 460
ILADEMGLGKTLQ I+ + LR + M + L++ P S NW EF KW +
Sbjct: 208 ILADEMGLGKTLQTISFLG-YLR---HIMGITGPHLVIVPKSTLDNWKREFGKWTPEVNV 263
Query: 461 CPYHVNQKNKAE---DYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGK 517
++ +A + + V I SYEM++R + ++ +I DE HR+KN +
Sbjct: 264 LVLQGAKEERAALIAERLVDESFDVCITSYEMILREKSHLKKFAWEYIIIDEAHRIKNEE 323
Query: 518 SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESR 577
S L +++ N R R+L++GTPLQN++ E + L +F P V G F + F
Sbjct: 324 SSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLPDVFGDSEAFDQWF-------- 375
Query: 578 SPNSTEAQKSLGELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLY 636
S E Q S + QL + F+LRR +DV+ SLL K+E L + T +Q++ Y
Sbjct: 376 ---SGEGQDS--DTVVQQLHRVLRPFLLRRVKADVEKSLL-PKKEVNLYLKMTEMQRTWY 429
Query: 637 LRCVEY-WDA-------RASRDSHLSVTHALRKICNHPGLVQ 670
+ +E DA R S+ L++ LRK CNHP L +
Sbjct: 430 QKILEKDIDAVNGANGKRESKTRLLNIVMQLRKCCNHPYLFE 471
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 320 (117.7 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 89/287 (31%), Positives = 146/287 (50%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
NP P V V +S L+ +Q+ G+++L+ L +L G IL D+MGLGKTLQ
Sbjct: 1334 NPKSIPNYKVPVP--ISVELRCYQQAGINWLWF----LNKYNLHG-ILCDDMGLGKTLQT 1386
Query: 415 IALI-WTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMC-PYHVNQKNKAE 472
I ++ + + + + L++ P +LT +W E +K+L + P H
Sbjct: 1387 ICILAGDHMHRQTANLANLPS-LVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGR 1445
Query: 473 DYVYSRVSP---VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
+ + S + +++ SY+ + + F+ + DEGH +KNGK+K + + L
Sbjct: 1446 EKLRSDIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKA 1505
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
R++LSGTP+QN++ E + L DF PG LG+ ++F + F PIL SR S+ ++ G
Sbjct: 1506 NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAG 1565
Query: 590 ELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY 636
L L ++ F+LRR + L K L+C +PLQ LY
Sbjct: 1566 VLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLY 1612
Score = 57 (25.1 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 29/123 (23%), Positives = 55/123 (44%)
Query: 225 VNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLI-CDEKSLLKPPSGNSPGN 283
+N N A+ ++ V E L R+Y + D+L ++ +PP+ P +
Sbjct: 871 INDFNNAKILTLDQIEAVATTLSENL-RSYP-LKPKVLDMLEERRRRAAFRPPTSRQPVS 928
Query: 284 DSGIPSLPRKSD----SGIGSLPCK-----RPLEESTA--ETLQCNQINSHLSVTHALRK 332
+ I S+ R+ + + LP K +PL ES + LQ Q+++ V H + +
Sbjct: 929 KAAIMSVLRQHSLAPSAALHCLPDKLNPVVKPLMESIKREQCLQLQQLSAEFLV-HLMDQ 987
Query: 333 ICN 335
+C+
Sbjct: 988 VCD 990
Score = 45 (20.9 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 648 SRDSHL-SVTHALRKICNHPGLV 669
S +H+ L+ +CNHP LV
Sbjct: 1641 SAKTHIFQALRYLQNVCNHPKLV 1663
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 324 (119.1 bits), Expect = 6.0e-25, P = 6.0e-25
Identities = 100/307 (32%), Positives = 157/307 (51%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALI-WTLLRQGPYGMPVI 432
L+ +Q G+ +L L +L G ILADEMGLGKT+ I+LI + +++G +G P
Sbjct: 781 LREYQHIGLDWLVS----LYEKNLNG-ILADEMGLGKTIMTISLIAYLAVQKGVWG-PH- 833
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH-VNQKNKAEDYVYSRVSP--VLIISYEM 489
LIV PSS+ NW EFK+W ++ YH ++ KA +S+ + V I SY M
Sbjct: 834 ---LIVVPSSVLFNWEMEFKRWCPGLKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYSM 890
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
++ + ++ +I DE H +KN K++ ++ M N +R+LL+GTPLQN+L E +
Sbjct: 891 VMSDHLIFRRKKWVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTPLQNNLMELWS 950
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L F P + S REF+ F P+ E + E ++L F+LRR
Sbjct: 951 LMHFLMPDIFQSHREFQDWFSNPVT-----GMIEGGDDVNEDIINRLHAVLRPFLLRRLK 1005
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA--SRDSHLSVTHAL---RKIC 663
DV+ + K ++ C + Q+ LY + ++ S S S+ + L RK+C
Sbjct: 1006 KDVEKQM-PPKHTHIVPCSMSRRQKFLYEEFINSSSTQSTLSSGSFFSIINILMQLRKVC 1064
Query: 664 NHPGLVQ 670
NHP L +
Sbjct: 1065 NHPDLFE 1071
>UNIPROTKB|G5E5P9 [details] [associations]
symbol:LOC789977 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:DAAA02024017
EMBL:DAAA02024018 EMBL:DAAA02024019 EMBL:DAAA02024020
EMBL:DAAA02024021 EMBL:DAAA02024022 Ensembl:ENSBTAT00000027486
Uniprot:G5E5P9
Length = 908
Score = 327 (120.2 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 91/290 (31%), Positives = 145/290 (50%)
Query: 370 LSRVLKPHQRQGVSFLYE-----RVCDLAS-LDLEGAI-----LADEMGLGKTLQCIA-- 416
++R L+ +QR+G FLY R C L + L + LA +G T + I
Sbjct: 57 INRYLRDYQREGAQFLYGHFIQGRGCILGDDMGLGKTVQVISFLAAVLGKKGTREDIENN 116
Query: 417 LIWTLLRQGPYGMPVIRK--VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474
+ LLR P K LIV P S+ NW DE W G R+ H N+K+
Sbjct: 117 MPEFLLRNMKKDPPSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTILHGNKKDSELIR 175
Query: 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRIL 534
V R + + +YE L + E+ +I DE HR+KN K+++ E+M L RI
Sbjct: 176 VKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEIMKALRCNVRIG 235
Query: 535 LSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSS 594
L+GT LQN+++E + + D+A PG+LGS F+K F +P+ + +T+ + + G
Sbjct: 236 LTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMQ 295
Query: 595 QLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWD 644
+LA++ +G+ LRRT + L K + ++ C T Q+++Y +E D
Sbjct: 296 RLARKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETED 345
Score = 37 (18.1 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 652 HLSVTHALRKICNHPGLVQ 670
+ S L+K+ NH L+Q
Sbjct: 382 YFSYLAVLQKVANHVALLQ 400
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 273 (101.2 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 64/202 (31%), Positives = 109/202 (53%)
Query: 436 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAY- 494
LIV P S+ NW DE W G ++ H ++K + + V + +YE L R Y
Sbjct: 111 LIVAPLSVLYNWKDELDTW-GYFKVSVLHGSKKEGDLNRIKQGKCEVALTTYETL-RLYL 168
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ + + +I DE HR+KN KS++ + M L RI L+GT LQN++ E + + D+A
Sbjct: 169 DELNNIGWSAVIVDEVHRIKNPKSQITQTMKSLKCNVRIGLTGTILQNNMNELWCVMDWA 228
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
PG+LGS F+K F +P+ + +T+ + + G +LA++ + + LRRT + +
Sbjct: 229 VPGLLGSRVHFKKKFSDPLERGQRHTATKRELATGRKAMVKLARKMSSWFLRRTKVLISD 288
Query: 615 LLNSKRETLLVCRATPLQQSLY 636
L K + ++ C T Q+++Y
Sbjct: 289 QLPKKEDRMVYCSLTEFQKAVY 310
Score = 94 (38.1 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQ 424
++R L+ +QR+G FLY + G IL D+MGLGKT+Q I+ + +L +
Sbjct: 30 INRYLRGYQREGAQFLYWHYANK-----RGCILGDDMGLGKTVQVISFLAAVLHK 79
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 316 (116.3 bits), Expect = 7.2e-25, P = 7.2e-25
Identities = 96/276 (34%), Positives = 141/276 (51%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
+LKP+Q +G+++L L L G ILADEMGLGKT+Q IAL+ + Y M
Sbjct: 221 ILKPYQLEGLNWLIT----LYENGLNG-ILADEMGLGKTVQSIALLAFI-----YEMDTK 270
Query: 433 RKVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVN----QKNKAEDYVYSRVSP-VLIIS 486
L+ P S NW +EF K+ L + Y N + K +++ ++I S
Sbjct: 271 GPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITS 330
Query: 487 YEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQE 546
YE+++R I+ + LI DEGHRLKN +L + + +N R+LL+GTPLQN+L E
Sbjct: 331 YEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAE 390
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSL--GELRS---SQLAKRTA 601
+ L +F P + F K F+ L S +++EA L EL+ S L
Sbjct: 391 LWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNLHTILK 450
Query: 602 GFILRRTSDVQ-ASLLNSKRETLLVCRATPLQQSLY 636
F+LRR V A++L KRE ++ C T Q+ Y
Sbjct: 451 PFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFY 486
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 331 (121.6 bits), Expect = 7.3e-25, Sum P(2) = 7.3e-25
Identities = 102/323 (31%), Positives = 158/323 (48%)
Query: 356 PSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
P G L V + +L+ R+ + + + L G ILADEMGLGKT+Q I
Sbjct: 606 PKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIQTI 664
Query: 416 ALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KA 471
+L+ L +G +G P LI+ P+S+ NW E K+W ++ Y+ QK K
Sbjct: 665 SLLAHLACEKGNWG-PH----LIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKR 719
Query: 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ + V I SY+++++ +Q + LI DE +KN KS+ ++ + N ++
Sbjct: 720 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQR 779
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+LL+GTPLQN L E + L F P V S REF++ F P+ E + E
Sbjct: 780 RLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-----GMIEGSQEYNEG 834
Query: 592 RSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-R 649
+L K F+LRR DV+ + K E ++ CR + Q+ LY + + +
Sbjct: 835 LVKRLHKVLRPFLLRRVKVDVEKQM-PKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLA 893
Query: 650 DSH-LSVTHAL---RKICNHPGL 668
H +SV + L RK+CNHP L
Sbjct: 894 TGHFMSVINILMQLRKVCNHPNL 916
Score = 47 (21.6 bits), Expect = 7.3e-25, Sum P(2) = 7.3e-25
Identities = 15/67 (22%), Positives = 26/67 (38%)
Query: 254 YQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGI-GSLPCKRPLEESTA 312
Y ++ + + K+ P G+S S P + R D I G + EE
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRLDDEAIDGDFQPQEEEEEDDE 302
Query: 313 ETLQCNQ 319
ET++ +
Sbjct: 303 ETIEVEE 309
>ZFIN|ZDB-GENE-110411-274 [details] [associations]
symbol:si:ch211-248d20.2 "si:ch211-248d20.2"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-110411-274
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:CR376747 IPI:IPI00994578 RefSeq:XP_689596.5 UniGene:Dr.83737
Ensembl:ENSDART00000122774 Ensembl:ENSDART00000125173 GeneID:553504
KEGG:dre:553504 NextBio:20880249 Uniprot:F1QJP0
Length = 1269
Score = 321 (118.1 bits), Expect = 8.8e-25, Sum P(2) = 8.8e-25
Identities = 88/291 (30%), Positives = 148/291 (50%)
Query: 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422
DV V ++R L+ +QR+G+ F+Y+ G IL D+MGLGKT+Q I + +L
Sbjct: 49 DVKVPYTINRYLRDYQREGIKFIYQNYAKS-----RGCILGDDMGLGKTVQVIGFLAAVL 103
Query: 423 RQ-GPY-----GMPV----------IRKV-LIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
++ G + P ++KV +IV P S+ NW DE W G R+ H
Sbjct: 104 QKTGTWKDVENNRPQFLLSQKPSERVQKVFVIVAPLSVLYNWKDELDTW-GHFRVVVVHG 162
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+K++ V + + +YE L + +I DE H++KN KSK+ + +
Sbjct: 163 VRKDEELARVQRGRCEIALTTYETLRLCLDQFNSINWAAVIVDEAHKIKNHKSKITQAVK 222
Query: 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQ 585
+ + RI L+GT LQN+L+E + + ++A P LGSL F+ F +PI + + T+
Sbjct: 223 QMRCKVRIGLTGTILQNNLEELWCVMNWAVPRCLGSLGAFKNRFSDPIEKGQKHTVTKRA 282
Query: 586 KSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY 636
+ G +LAK+ + + LRRT + + L K + ++ C T Q+++Y
Sbjct: 283 LAEGRKAVQELAKKLSRWFLRRTKSLISDQLPKKDDRVVYCSLTDFQRTVY 333
Score = 47 (21.6 bits), Expect = 8.8e-25, Sum P(2) = 8.8e-25
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 649 RDSHLSVTHALRKICNHPGLVQQPD 673
R + S LRK+ NH L+Q D
Sbjct: 375 RHLYFSYLAILRKVANHVALLQSKD 399
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 318 (117.0 bits), Expect = 8.8e-25, P = 8.8e-25
Identities = 106/363 (29%), Positives = 183/363 (50%)
Query: 331 RKICNHPGLVQQPDVMEEEGQWKHN-PSGKPLVDVT-VD-GFLSR-VLKPHQRQGVSFLY 386
R++ N GL ++ + Q K + P+G P++ + FL R L+ +Q+ G+ +L
Sbjct: 401 RRV-NDDGLARKKSIAGISEQRKFDEPNGSPVLHANKIQVPFLFRGTLREYQQYGLEWLT 459
Query: 387 ERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSN 446
L + G ILADEMGLGKT+Q IAL+ L + P LI+ P+S+ N
Sbjct: 460 A----LHDSNTNG-ILADEMGLGKTIQTIALLAHLACEKENWGPH----LIIVPTSVMLN 510
Query: 447 WNDEFKKWLGLTRMCPYHVN---QKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFD 503
W EFKK+L ++ Y+ N +K K + V I SY+++++ +Q ++
Sbjct: 511 WEMEFKKFLPGFKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQLVLQDHQPFRRKKWQ 570
Query: 504 LLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANP-GV---- 558
+I DE H +KN +S+ ++ + N R+LL+GTPLQN+L E + L F P GV
Sbjct: 571 YMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLMPAGVTQNN 630
Query: 559 --LGSLREFRKNFEEP---ILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQA 613
+L++F+ F +P ++E + EA ++ +L + ++LRR
Sbjct: 631 SAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLH-----RVLRPYLLRRLKTEVE 685
Query: 614 SLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA--SRDSHLSVTHAL---RKICNHPGL 668
+ +K E ++ C+ + Q+ LY + R + + +S+ + L RK+CNHP L
Sbjct: 686 KQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILASGNFMSIINCLMQLRKVCNHPNL 745
Query: 669 VQQ 671
++
Sbjct: 746 HEE 748
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 331 (121.6 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 100/312 (32%), Positives = 162/312 (51%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LK +Q +G+ ++ L + L G ILADEMGLGKT+Q I+L+ T L Y M IR
Sbjct: 767 LKDYQIKGLQWMVS----LFNNHLNG-ILADEMGLGKTIQTISLL-TYL----YEMKNIR 816
Query: 434 -KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH--VNQKNKAEDYVYSRVSPVLIISYEML 490
L++ P S SNW+ EF KW R + N++ + + + V++ ++E +
Sbjct: 817 GPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYI 876
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKL-YELMTGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + ++ +I DEGHR+KN +SKL L T + R++L+GTPLQN+L E +
Sbjct: 877 IKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWA 936
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S++ F + F P + + E + L +L K F+LRR
Sbjct: 937 LLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRPFLLRRLK 996
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLYLRCVEY-----WDARASRDSHL----SVTHAL 659
DV+ L + K E ++ C+ + LQQ +Y + ++Y D + L + L
Sbjct: 997 KDVEKELPD-KVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQL 1055
Query: 660 RKICNHPGLVQQ 671
+KICNHP + ++
Sbjct: 1056 KKICNHPFVFEE 1067
Score = 39 (18.8 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 166 HAKTEVNPLILPKPIVDHQEKNRRSYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 225
HAK + P +LP I H + I + LI +L + ND K L C
Sbjct: 474 HAKFTIEPGVLPVGIDTHTATD----IYQTLIAL--NLDTTVNDCLDKLLN--DECT-ES 524
Query: 226 NQKNKAEDYVYSRVSPV 242
++N DY ++ P+
Sbjct: 525 TRENALYDYYALQLLPL 541
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 316 (116.3 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 101/306 (33%), Positives = 155/306 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 186 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 238
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
VL+ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 239 MVLV--PKSTLHNWMNEFKRWVPSLRVICF-VGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWA 355
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 356 LLNFLLPDVFNSAEDFDSWFD-------TKNCLGDQKLVERLHT--VLKP---FLLRRIK 403
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRKI 662
+DV+ SL K+E + + +Q+ Y ++ ++ ++ D L++ LRK
Sbjct: 404 TDVEKSL-PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKC 462
Query: 663 CNHPGL 668
CNHP L
Sbjct: 463 CNHPYL 468
>UNIPROTKB|H0YMN5 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 PROSITE:PS51413
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC020661 GO:GO:0016817 ChiTaRS:INO80
HGNC:HGNC:26956 EMBL:AC021753 ProteinModelPortal:H0YMN5 SMR:H0YMN5
Ensembl:ENST00000558357 Bgee:H0YMN5 Uniprot:H0YMN5
Length = 1104
Score = 316 (116.3 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 102/344 (29%), Positives = 181/344 (52%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
NPS + D+ + LK +Q +G+++L +L + G ILADEMGLGKT+Q
Sbjct: 499 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWL----ANLYEQGING-ILADEMGLGKTVQS 553
Query: 415 IALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK--- 470
IAL+ L R+ +G P LI++P+S +NW+ EF +++ ++ PY N ++
Sbjct: 554 IALLAHLAERENIWG-PF----LIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVI 608
Query: 471 ----AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524
++ +Y++ +P V+I SY+++++ + ++ ++ DE LK+ S ++++
Sbjct: 609 RRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKIL 668
Query: 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEA 584
R R+LL+GTP+QN + E + L F P + S EF + F + I ES + N +
Sbjct: 669 LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI-ESHAENKS-- 725
Query: 585 QKSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY--LR--- 638
++ E + S+L F+LRR DV+ L + K E L+ C+ T Q+ LY L+
Sbjct: 726 --AIDENQLSRLHMILKPFMLRRIKKDVENEL-SDKIEILMYCQLTSRQKLLYQALKNKI 782
Query: 639 CVE---------YWDARASRDSHLSVTHALRKICNHPGLVQQPD 673
+E A+ + S +++ RK+CNHP L ++ +
Sbjct: 783 SIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 318 (117.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 102/344 (29%), Positives = 181/344 (52%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
NPS + D+ + LK +Q +G+++L +L + G ILADEMGLGKT+Q
Sbjct: 502 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWL----ANLYEQGING-ILADEMGLGKTVQS 556
Query: 415 IALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK--- 470
IAL+ L R+ +G P LI++P+S +NW+ EF +++ ++ PY N ++
Sbjct: 557 IALLAHLAERENIWG-PF----LIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVI 611
Query: 471 ----AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524
++ +Y++ +P V+I SY+++++ + ++ ++ DE LK+ S ++++
Sbjct: 612 RRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKIL 671
Query: 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEA 584
R R+LL+GTP+QN + E + L F P + S EF + F + I ES + N +
Sbjct: 672 LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI-ESHAENKS-- 728
Query: 585 QKSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY--LR--- 638
++ E + S+L F+LRR DV+ L + K E L+ C+ T Q+ LY L+
Sbjct: 729 --AIDENQLSRLHMILKPFMLRRIKKDVENEL-SDKIEILMYCQLTSRQKLLYQALKNKI 785
Query: 639 CVE---------YWDARASRDSHLSVTHALRKICNHPGLVQQPD 673
+E A+ + S +++ RK+CNHP L ++ +
Sbjct: 786 SIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQE 829
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 318 (117.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 102/344 (29%), Positives = 181/344 (52%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
NPS + D+ + LK +Q +G+++L +L + G ILADEMGLGKT+Q
Sbjct: 508 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWL----ANLYEQGING-ILADEMGLGKTVQS 562
Query: 415 IALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK--- 470
IAL+ L R+ +G P LI++P+S +NW+ EF +++ ++ PY N ++
Sbjct: 563 IALLAHLAERENIWG-PF----LIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVI 617
Query: 471 ----AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524
++ +Y++ +P V+I SY+++++ + ++ ++ DE LK+ S ++++
Sbjct: 618 RRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKIL 677
Query: 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEA 584
R R+LL+GTP+QN + E + L F P + S EF + F + I ES + N +
Sbjct: 678 LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI-ESHAENKS-- 734
Query: 585 QKSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY--LR--- 638
++ E + S+L F+LRR DV+ L + K E L+ C+ T Q+ LY L+
Sbjct: 735 --AIDENQLSRLHMILKPFMLRRIKKDVENEL-SDKIEILMYCQLTSRQKLLYQALKNKI 791
Query: 639 CVE---------YWDARASRDSHLSVTHALRKICNHPGLVQQPD 673
+E A+ + S +++ RK+CNHP L ++ +
Sbjct: 792 SIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQE 835
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 318 (117.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 102/344 (29%), Positives = 181/344 (52%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
NPS + D+ + LK +Q +G+++L +L + G ILADEMGLGKT+Q
Sbjct: 508 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWL----ANLYEQGING-ILADEMGLGKTVQS 562
Query: 415 IALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK--- 470
IAL+ L R+ +G P LI++P+S +NW+ EF +++ ++ PY N ++
Sbjct: 563 IALLAHLAERENIWG-PF----LIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVI 617
Query: 471 ----AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524
++ +Y++ +P V+I SY+++++ + ++ ++ DE LK+ S ++++
Sbjct: 618 RRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKIL 677
Query: 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEA 584
R R+LL+GTP+QN + E + L F P + S EF + F + I ES + N +
Sbjct: 678 LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI-ESHAENKS-- 734
Query: 585 QKSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY--LR--- 638
++ E + S+L F+LRR DV+ L + K E L+ C+ T Q+ LY L+
Sbjct: 735 --AIDENQLSRLHMILKPFMLRRIKKDVENEL-SDKIEILMYCQLTSRQKLLYQALKNKI 791
Query: 639 CVE---------YWDARASRDSHLSVTHALRKICNHPGLVQQPD 673
+E A+ + S +++ RK+CNHP L ++ +
Sbjct: 792 SIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHPELFERQE 835
>FB|FBgn0034976 [details] [associations]
symbol:CG4049 species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 RefSeq:NP_611885.3
UniGene:Dm.15012 ProteinModelPortal:Q9W1A8 SMR:Q9W1A8
MINT:MINT-1613726 EnsemblMetazoa:FBtr0072285 GeneID:37860
KEGG:dme:Dmel_CG4049 UCSC:CG4049-RA FlyBase:FBgn0034976
InParanoid:Q9W1A8 OMA:KCETDLD OrthoDB:EOG4N8PKK PhylomeDB:Q9W1A8
GenomeRNAi:37860 NextBio:805742 Bgee:Q9W1A8 Uniprot:Q9W1A8
Length = 1669
Score = 238 (88.8 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 59/184 (32%), Positives = 93/184 (50%)
Query: 486 SYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
S +++ Y+ +V DL+ICDEGHR+KN + + + + R+RI+L+G PLQN+L
Sbjct: 547 SSDLMNLVYEALVKPGPDLVICDEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNNLL 606
Query: 546 EFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFIL 605
E++ + DF P LG+ EF FE PI + +ST L R+ L GF+
Sbjct: 607 EYWCMVDFVRPNYLGTRTEFCNMFERPIQNGQCVDSTPDDIKLMRYRAHVLHSLLLGFVQ 666
Query: 606 RRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSHLSVTHALRKICNH 665
RR+ V L K E +++ + T Q+ LY + + + L KI NH
Sbjct: 667 RRSHTVLQLTLPQKYEYVILVKMTAFQRKLYDTFMTDVVRTKAFPNPLKAFAVCCKIWNH 726
Query: 666 PGLV 669
P ++
Sbjct: 727 PDVL 730
Score = 136 (52.9 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 40/119 (33%), Positives = 58/119 (48%)
Query: 344 DVMEEEGQWKHN---PSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE-- 398
+V +E GQ N P G+ + + +++V+KPHQ GV FLY+ + + +
Sbjct: 360 NVPDENGQVVVNMAHPEGEETLYLAPQ--IAKVIKPHQIGGVRFLYDNIIESTRRYNKSS 417
Query: 399 --GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL 455
G ILA MGLGKTLQ ++ LR + VL V P + NW EF W+
Sbjct: 418 GFGCILAHSMGLGKTLQVVSFCDIFLRHTS-----AKTVLCVMPINTLQNWLSEFNMWI 471
Score = 51 (23.0 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 195 VLIVTPSSLTSNWNDEFKKWL 215
VL V P + NW EF W+
Sbjct: 451 VLCVMPINTLQNWLSEFNMWI 471
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 313 (115.2 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 101/306 (33%), Positives = 155/306 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 186 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 238
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
VL+ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 239 MVLV--PKSTLHNWMNEFKRWVPSLRVICF-VGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 355
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 356 LLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRIK 403
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRKI 662
+DV+ SL K+E + + +Q+ Y ++ ++ ++ D L++ LRK
Sbjct: 404 TDVEKSL-PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKC 462
Query: 663 CNHPGL 668
CNHP L
Sbjct: 463 CNHPYL 468
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 317 (116.6 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 118/435 (27%), Positives = 206/435 (47%)
Query: 267 CDEKSLLKPPSGNSPGN--DSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHL 324
C ++ +L+ NS D G + S S K ++ E Q +Q + L
Sbjct: 410 CTQEEILRKLEDNSSQRQIDIGGGVMVNVSQEDYDSDYYKSQALKNAKEAYQIHQARTRL 469
Query: 325 SVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSF 384
A C E NPS + D+ + LK +Q +G+++
Sbjct: 470 FDEEAKDSRCASLHAASMSGSGFGESYSLSNPSIQAGEDIPQPTIFNGKLKGYQLKGMNW 529
Query: 385 LYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGPYGMPVIRKVLIVTPSSL 443
L +L + G ILADEMGLGKT+Q IAL+ L R+ +G P LI++P+S
Sbjct: 530 L----ANLYEQGING-ILADEMGLGKTVQSIALLAHLAERENIWG-PF----LIISPAST 579
Query: 444 TSNWNDEFKKWLGLTRMCPYHVNQKNK-------AEDYVYSRVSP--VLIISYEMLIRAY 494
+NW+ EF +++ ++ PY N ++ ++ +Y++ +P V+I SY+++++
Sbjct: 580 LNNWHQEFSRFVPKFKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFHVVITSYQLVVQDV 639
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ ++ ++ DE LK+ S ++++ R R+LL+GTP+QN + E + L F
Sbjct: 640 KYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFI 699
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS-DVQA 613
P + S EF + F + I ES + N + ++ E + S+L F+LRR DV+
Sbjct: 700 MPTLFDSHEEFNEWFSKDI-ESHAENKS----AIDENQLSRLHMILKPFMLRRIKKDVEN 754
Query: 614 SLLNSKRETLLVCRATPLQQSLY--LR---CVE---------YWDARASRDSHLSVTHAL 659
L + K E L C+ T Q+ LY L+ +E A ++ S +++
Sbjct: 755 EL-SDKIEILTYCQLTSRQRLLYQALKNKISIEDLLQSSMGSAQQAHSTTSSLMNLVMQF 813
Query: 660 RKICNHPGLVQQPDM 674
RK+CNHP L ++ ++
Sbjct: 814 RKVCNHPDLFERQEI 828
>UNIPROTKB|E1C8H5 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0070087 "chromo shadow domain binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:AADN02013550 EMBL:AADN02013551 IPI:IPI00573178
Ensembl:ENSGALT00000012737 Uniprot:E1C8H5
Length = 2434
Score = 233 (87.1 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 52/142 (36%), Positives = 79/142 (55%)
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ +VD D ++CDEGH LKN S + + M + R+RI+L+GTPLQN+L E+ + +F
Sbjct: 1648 KALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFI 1707
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
+LGS++EFR F PI + +ST + + R+ L + AG + R+
Sbjct: 1708 KENLLGSIKEFRNRFINPIQNGQCADSTLVDVRVMKKRAHILYEMLAGCVQRKDYTALTK 1767
Query: 615 LLNSKRETLLVCRATPLQQSLY 636
L K E +L R TP+Q LY
Sbjct: 1768 FLPPKYEYVLEVRMTPIQCKLY 1789
Score = 155 (59.6 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 52/158 (32%), Positives = 77/158 (48%)
Query: 345 VMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDL----EGA 400
V++E+ + K +PLV V ++R LKPHQ GV F+++ C+ G
Sbjct: 1480 VLDEDEETK-----EPLVQVH-RSIVTR-LKPHQVDGVQFMWDCCCESVKKTKTSPGSGC 1532
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLT- 458
ILA MGLGKTLQ ++ + T+L R L+V P + NW +EF+KW GL
Sbjct: 1533 ILAHCMGLGKTLQVVSFLHTVLLCDKLNF---RTALVVCPLNTALNWLNEFEKWQEGLED 1589
Query: 459 ----RMCPYHVNQKNKAEDYVYSRVSP---VLIISYEM 489
+C ++ + Y+ R V+II YEM
Sbjct: 1590 DEKLEVCELATVKRPQERSYMLQRWQDEGGVMIIGYEM 1627
Score = 67 (28.6 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 196 LIVTPSSLTSNWNDEFKKWL-GLT-----RMCPYHVNQKNKAEDYVYSRVSP---VLIIS 246
L+V P + NW +EF+KW GL +C ++ + Y+ R V+II
Sbjct: 1565 LVVCPLNTALNWLNEFEKWQEGLEDDEKLEVCELATVKRPQERSYMLQRWQDEGGVMIIG 1624
Query: 247 YEM 249
YEM
Sbjct: 1625 YEM 1627
Score = 38 (18.4 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 19 DQEEQFDSTLSKENHN 34
D E+ D T++++N N
Sbjct: 88 DDEQVLDETVNEDNSN 103
Score = 37 (18.1 bits), Expect = 2.3e-24, Sum P(3) = 2.3e-24
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 15 EAYLDQEEQFDSTLSK 30
E Y ++E FDS+ K
Sbjct: 959 EKYTEKEHTFDSSKEK 974
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 316 (116.3 bits), Expect = 1.9e-24, P = 1.9e-24
Identities = 102/344 (29%), Positives = 181/344 (52%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
NPS + D+ + LK +Q +G+++L +L + G ILADEMGLGKT+Q
Sbjct: 499 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWL----ANLYEQGING-ILADEMGLGKTVQS 553
Query: 415 IALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK--- 470
IAL+ L R+ +G P LI++P+S +NW+ EF +++ ++ PY N ++
Sbjct: 554 IALLAHLAERENIWG-PF----LIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVI 608
Query: 471 ----AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524
++ +Y++ +P V+I SY+++++ + ++ ++ DE LK+ S ++++
Sbjct: 609 RRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKIL 668
Query: 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEA 584
R R+LL+GTP+QN + E + L F P + S EF + F + I ES + N +
Sbjct: 669 LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI-ESHAENKS-- 725
Query: 585 QKSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY--LR--- 638
++ E + S+L F+LRR DV+ L + K E L+ C+ T Q+ LY L+
Sbjct: 726 --AIDENQLSRLHMILKPFMLRRIKKDVENEL-SDKIEILMYCQLTSRQKLLYQALKNKI 782
Query: 639 CVE---------YWDARASRDSHLSVTHALRKICNHPGLVQQPD 673
+E A+ + S +++ RK+CNHP L ++ +
Sbjct: 783 SIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 313 (115.2 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 99/306 (32%), Positives = 155/306 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L + P
Sbjct: 163 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYRNFPGPH-- 215
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
+++ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 216 --MVLVPKSTLHNWMNEFKRWVPSLRVICF-VGDKDVRAAFIRDEMMPGEWDVCVTSYEM 272
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 273 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 332
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 333 LLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRIK 380
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRKI 662
+DV+ SL K+E + + +Q+ Y ++ ++ ++ D L++ LRK
Sbjct: 381 TDVEKSL-PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKC 439
Query: 663 CNHPGL 668
CNHP L
Sbjct: 440 CNHPYL 445
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 313 (115.2 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 101/306 (33%), Positives = 155/306 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 183 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 235
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
VL+ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 236 MVLV--PKSTLHNWMNEFKRWVPSLRVICF-VGDKDARAAFIRDEMMPGEWDVCVTSYEM 292
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 293 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 352
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 353 LLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRIK 400
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRKI 662
+DV+ SL K+E + + +Q+ Y ++ ++ ++ D L++ LRK
Sbjct: 401 TDVEKSL-PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKC 459
Query: 663 CNHPGL 668
CNHP L
Sbjct: 460 CNHPYL 465
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 313 (115.2 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 101/306 (33%), Positives = 155/306 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 186 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 238
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
VL+ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 239 MVLV--PKSTLHNWMNEFKRWVPSLRVICF-VGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 355
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 356 LLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRIK 403
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRKI 662
+DV+ SL K+E + + +Q+ Y ++ ++ ++ D L++ LRK
Sbjct: 404 TDVEKSL-PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKC 462
Query: 663 CNHPGL 668
CNHP L
Sbjct: 463 CNHPYL 468
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 313 (115.2 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 101/306 (33%), Positives = 155/306 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 186 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 238
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
VL+ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 239 MVLV--PKSTLHNWMNEFKRWVPSLRVICF-VGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 355
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 356 LLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRIK 403
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRKI 662
+DV+ SL K+E + + +Q+ Y ++ ++ ++ D L++ LRK
Sbjct: 404 TDVEKSL-PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKC 462
Query: 663 CNHPGL 668
CNHP L
Sbjct: 463 CNHPYL 468
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 313 (115.2 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 101/306 (33%), Positives = 155/306 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 186 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 238
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
VL+ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 239 MVLV--PKSTLHNWMNEFKRWVPSLRVICF-VGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 355
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 356 LLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRIK 403
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRKI 662
+DV+ SL K+E + + +Q+ Y ++ ++ ++ D L++ LRK
Sbjct: 404 TDVEKSL-PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKC 462
Query: 663 CNHPGL 668
CNHP L
Sbjct: 463 CNHPYL 468
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 313 (115.2 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 101/306 (33%), Positives = 155/306 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 186 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 238
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
VL+ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 239 MVLV--PKSTLHNWMNEFKRWVPSLRVICF-VGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 296 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 355
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 356 LLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRIK 403
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRKI 662
+DV+ SL K+E + + +Q+ Y ++ ++ ++ D L++ LRK
Sbjct: 404 TDVEKSL-PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKC 462
Query: 663 CNHPGL 668
CNHP L
Sbjct: 463 CNHPYL 468
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 331 (121.6 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 102/323 (31%), Positives = 158/323 (48%)
Query: 356 PSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCI 415
P G L V + +L+ R+ + + + L G ILADEMGLGKT+Q I
Sbjct: 603 PKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIQTI 661
Query: 416 ALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN---KA 471
+L+ L +G +G P LI+ P+S+ NW E K+W ++ Y+ QK K
Sbjct: 662 SLLAHLACEKGNWG-PH----LIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKR 716
Query: 472 EDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK 531
+ + V I SY+++++ +Q + LI DE +KN KS+ ++ + N ++
Sbjct: 717 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQR 776
Query: 532 RILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGEL 591
R+LL+GTPLQN L E + L F P V S REF++ F P+ E + E
Sbjct: 777 RLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT-----GMIEGSQEYNEG 831
Query: 592 RSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS-R 649
+L K F+LRR DV+ + K E ++ CR + Q+ LY + + +
Sbjct: 832 LVKRLHKVLRPFLLRRVKVDVEKQM-PKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLA 890
Query: 650 DSH-LSVTHAL---RKICNHPGL 668
H +SV + L RK+CNHP L
Sbjct: 891 TGHFMSVINILMQLRKVCNHPNL 913
Score = 42 (19.8 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 14/66 (21%), Positives = 25/66 (37%)
Query: 254 YQTIVDTEFDLLICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAE 313
Y ++ + + K+ P G+S S P + R D I + EE E
Sbjct: 243 YSDLLSQSLNQPLASSKAGSSPCLGSSSAASSPPPPVSRMDDEAIDGDFQPQEEEEDDEE 302
Query: 314 TLQCNQ 319
T++ +
Sbjct: 303 TIEVEE 308
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 317 (116.6 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 103/333 (30%), Positives = 153/333 (45%)
Query: 353 KHNPSGKPLVDVTVDG---FLSR-VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGL 408
K P G L V FL R L+ +Q G+ ++ L +L G ILADEMGL
Sbjct: 533 KFQPKGYTLETTQVKTPVPFLIRGQLREYQMVGLDWMVT----LYEKNLNG-ILADEMGL 587
Query: 409 GKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQK 468
GKT+Q I+L+ + P LIV P+S+ NW EFKKW ++ Y K
Sbjct: 588 GKTIQTISLLAHMACSESIWGPH----LIVVPTSVILNWEMEFKKWCPALKILTYFGTAK 643
Query: 469 NKAED---YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+AE ++ V I SY+ + + + + LI DE +KN KS+ ++ +
Sbjct: 644 ERAEKRKGWMKPNCFHVCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALL 703
Query: 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQ 585
+ R+R+LL+GTPLQN L E + L F P + S +F+ F P+ N
Sbjct: 704 NVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEFNA 763
Query: 586 KSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA 645
+G L K FILRR L K E ++ C + Q+ LY ++
Sbjct: 764 PLIGRLH-----KVLRPFILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLY---DDFMSR 815
Query: 646 RASRD--------SHLSVTHALRKICNHPGLVQ 670
R++++ S L++ LRK CNHP L +
Sbjct: 816 RSTKENLKSGNMMSVLNIVMQLRKCCNHPNLFE 848
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 323 (118.8 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 88/269 (32%), Positives = 140/269 (52%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
NPS + V +S L+ +Q++GV++L L +L G IL D+MGLGKTLQ
Sbjct: 1341 NPSKVEAFSIPVP--ISADLRKYQQEGVNWL----AFLNKYELHG-ILCDDMGLGKTLQT 1393
Query: 415 IALIWT--LLRQGPY---GMPVIRKV--LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ 467
I ++ + RQ + G P V LIV PS+L +W E + ++ Y
Sbjct: 1394 ICIVASDHYNRQKLFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPP 1453
Query: 468 KNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGL 527
+A+ + S V++ SY++ +V +++ + DEGH +KN ++KL + + L
Sbjct: 1454 AERAKIRSKMKKSDVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSL 1513
Query: 528 NIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKS 587
R++LSGTP+QN++ E + L DF PG LG+ + F++ F PI SR S+ ++
Sbjct: 1514 RSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERE 1573
Query: 588 LGELRSSQLAKRTAGFILRRTS-DVQASL 615
G L + K+ F+LRR DV A L
Sbjct: 1574 RGTLALEAIHKQVLPFMLRRLKEDVLADL 1602
Score = 55 (24.4 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 646 RASRDSHL-SVTHALRKICNHPGLV 669
+ S+ +H+ +RK+CNHP L+
Sbjct: 1649 KKSQKAHIFQALQYMRKLCNHPALI 1673
Score = 37 (18.1 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 172 NPLILPKPIVDHQEKNRR 189
+P LP+ ++D +EK R+
Sbjct: 1317 DPPDLPQYLLDSREKERK 1334
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 304 (112.1 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 102/312 (32%), Positives = 151/312 (48%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 766 LKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEFKRLNGPF-- 818
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEMLI 491
LI+ P S SNW EF KW Y + + R VL+ +YE +I
Sbjct: 819 --LIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAFLPILRSGKFNVLVTTYEYII 876
Query: 492 RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFYL 550
+ Q + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E + L
Sbjct: 877 KDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWAL 936
Query: 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS- 609
+F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 937 LNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLKK 994
Query: 610 DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTHA 658
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 995 EVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQ 1053
Query: 659 LRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1054 LRKICNHPYMFQ 1065
Score = 63 (27.2 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 271 SLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHAL 330
S + PP SPG + P + + + I P ++P E LQ + + H +
Sbjct: 343 SPVMPPQTQSPGQPAQPPMVLHQKQNRI--TPIQKPRGLDPVEILQEREYRLQARIAHRI 400
Query: 331 RKICNHPG 338
+++ N PG
Sbjct: 401 QELENLPG 408
Score = 46 (21.3 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 281 PGNDSGIPSLPRKSDSGIG 299
PG G+P++P S G G
Sbjct: 237 PGMQQGMPNMPPASGQGAG 255
Score = 42 (19.8 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 19 DQEEQFDSTLSKENHNYVYPEPGGTEVSEAQNSNH 53
D EE+ + + V P+P +VSE ++ H
Sbjct: 685 DDEEEPQPSQAPTEEKKVIPDPDSEDVSEV-DARH 718
Score = 42 (19.8 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 271 SLLKPPSGNSPGNDSGI--PSLPRKSDSGIGSLPCKRP 306
++L P G SPG+ G+ PS P SG LP + P
Sbjct: 26 AMLGPSPGPSPGSAHGMMGPS-PGPPSSG-HPLPPQGP 61
Score = 40 (19.1 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 20/84 (23%), Positives = 33/84 (39%)
Query: 278 GNSPGNDSGIPSLPRKSDSGI---GSLPCKRPLEESTAETLQCNQINSHLSVTHALRKIC 334
G SPG S LP + SG +P+E + + +Q + +R+
Sbjct: 44 GPSPGPPSSGHPLPPQGPSGYPQDNMHQMHKPMEGMHEKGIPEDQRYGQMKGM-GMRQ-G 101
Query: 335 NHPGLVQQPDVMEEEGQWKHNPSG 358
H G+ P M++ Q +P G
Sbjct: 102 GHSGMGPPPSPMDQHSQGYPSPLG 125
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 312 (114.9 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 101/306 (33%), Positives = 155/306 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 187 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 239
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
VL+ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 240 MVLV--PKSTLHNWMNEFKRWVPSLRVICF-VGDKDVRAAFIRDEMMPGEWDVCVTSYEM 296
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 297 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 356
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 357 LLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRIK 404
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRKI 662
+DV+ SL K+E + + +Q+ Y ++ ++ ++ D L++ LRK
Sbjct: 405 TDVEKSL-PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKC 463
Query: 663 CNHPGL 668
CNHP L
Sbjct: 464 CNHPYL 469
>ZFIN|ZDB-GENE-030912-11 [details] [associations]
symbol:atrx "alpha thalassemia/mental retardation
syndrome X-linked homolog (human)" species:7955 "Danio rerio"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 ZFIN:ZDB-GENE-030912-11 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
InterPro:IPR025766 PROSITE:PS51533 EMBL:CR931764 EMBL:CR855117
IPI:IPI00899757 Ensembl:ENSDART00000127594 Uniprot:E7F4M2
Length = 2011
Score = 238 (88.8 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 56/153 (36%), Positives = 85/153 (55%)
Query: 485 ISYEMLIRAYQ-TIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQND 543
I + L +Q T+VD +F +ICDEGH LKN S + + M + R+R++L+GTPLQN+
Sbjct: 1249 IKSKKLKETFQKTLVDPDF--VICDEGHVLKNEASAVSKAMNSIKTRRRVVLTGTPLQNN 1306
Query: 544 LQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGF 603
L E+ + +F +LGS++EFR F PI + +ST + + R+ L + AG
Sbjct: 1307 LIEYHCMVNFIKENLLGSVKEFRNRFINPIQNGQCADSTLVDVRVMKKRAHILYEMLAGC 1366
Query: 604 ILRRTSDVQASLLNSKRETLLVCRATPLQQSLY 636
+ RR L K E +L R +P+Q LY
Sbjct: 1367 VQRRDYTALTKFLPPKHEYVLAVRLSPIQCKLY 1399
Score = 139 (54.0 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 40/114 (35%), Positives = 61/114 (53%)
Query: 345 VMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCD-LASLDLE---GA 400
V++E+ + K +PLV V + + LKPHQ GV F+++ C+ + ++ G
Sbjct: 1092 VLDEDEETK-----EPLVQVHRN--MVTKLKPHQVDGVQFMWDCCCESVRKVEKSAGSGC 1144
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454
ILA MGLGKTLQ + L+ T+L L+V P + NW +EF+KW
Sbjct: 1145 ILAHCMGLGKTLQVVTLLHTVLLCEKLNFST---ALVVCPLNTVLNWLNEFEKW 1195
Score = 56 (24.8 bits), Expect = 9.6e-16, Sum P(3) = 9.6e-16
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 196 LIVTPSSLTSNWNDEFKKW 214
L+V P + NW +EF+KW
Sbjct: 1177 LVVCPLNTVLNWLNEFEKW 1195
Score = 49 (22.3 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 26/101 (25%), Positives = 40/101 (39%)
Query: 3 GKDLTNVLDILNEAYLDQEEQFDSTLSKENHNYVYPEPGGTEV-SEAQNSNHATSVTRIF 61
GK L V+ +L+ L ++ F + L N V E E + VT +
Sbjct: 1153 GKTL-QVVTLLHTVLLCEKLNFSTALVVCPLNTVLNWLNEFEKWQEGLKDEESLEVTELA 1211
Query: 62 NVVYGKPSAKKHKSWEQDGVLEISGTMAILKDTLGKVIDSK 102
V + A + W++DG + I G T G+ I SK
Sbjct: 1212 TVKRPQERAYALQRWQEDGGVMIMGYEMYRNLTQGRNIKSK 1252
Score = 44 (20.5 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 47 EAQNSNHATS----VTRIFNVVYGKPSAKKHKSWEQDGVLEI 84
E+ +SNH + + ++ V GK +K K E +G E+
Sbjct: 699 ESDSSNHNSDLEKEIKKLSKVDSGKKKSKSTKKDEDEGSKEV 740
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 314 (115.6 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 99/313 (31%), Positives = 157/313 (50%)
Query: 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL----RQ 424
F+ LK +Q +G+ ++ L + +L G ILADEMGLGKT+Q IA I L+ +Q
Sbjct: 864 FVGGTLKDYQLKGLEWMLS----LYNNNLNG-ILADEMGLGKTIQTIAFITYLIEKKNQQ 918
Query: 425 GPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH-VNQKNKA-EDYVYSRVSPV 482
GP+ LI+ P S +NW EF+KW + Y Q K + + S V
Sbjct: 919 GPF--------LIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIRSSNFNV 970
Query: 483 LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE-LMTGLNIRKRILLSGTPLQ 541
L+ ++E +I+ + ++ +I DEGHR+KN +SKL L T + + R++L+GTPLQ
Sbjct: 971 LLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQ 1030
Query: 542 NDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTA 601
N+L E + L +F P + S++ F + F P + + + L +L K
Sbjct: 1031 NNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVLR 1090
Query: 602 GFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRCVEYW----DARASRDSHLSVT 656
F+ RR DV+ L + K E ++ C + LQ LY + ++ D + +
Sbjct: 1091 PFLFRRLKKDVEKELPD-KVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGKTGIKGLQ 1149
Query: 657 HA---LRKICNHP 666
+ L+KICNHP
Sbjct: 1150 NTVMQLKKICNHP 1162
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 314 (115.6 bits), Expect = 3.6e-24, P = 3.6e-24
Identities = 105/345 (30%), Positives = 175/345 (50%)
Query: 346 MEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADE 405
M E+ + K S + L D + + L+ +Q +G++FL + L+ ILADE
Sbjct: 598 MVEQQRTKGKASLRKL-DEQPEWLIGGTLRDYQLEGLNFLVN-----SWLNDTNVILADE 651
Query: 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
MGLGKT+Q ++++ L Q +P L+V P S +NW EF+KWL + Y
Sbjct: 652 MGLGKTVQSVSMLGFL--QNTQQIP--GPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVG 707
Query: 466 NQKNKA-----EDYVYSRVS-PV----LIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515
+ ++ E Y +V P+ L+ +YE++++ + ++ L+ DE HRLKN
Sbjct: 708 TRASREVCQQYEFYNEKKVGRPIKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKN 767
Query: 516 GKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILE 575
+++LY + + + ++L++GTPLQN ++E + L F +PG + EF +N++
Sbjct: 768 SEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYK----- 822
Query: 576 SRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQS 634
N + +S EL + L R ILRR DV+ SL K E +L +PLQ+
Sbjct: 823 ----NLSSFNES--ELANLHLELRP--HILRRVIKDVEKSL-PPKIERILRVEMSPLQKQ 873
Query: 635 LYLRCVE--YWD----ARASRDSHLSVTHALRKICNHPGLVQQPD 673
Y +E + D R ++ S L++ L+K CNHP L + D
Sbjct: 874 YYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESAD 918
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 304 (112.1 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 552 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 605
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 606 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 662
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 663 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 722
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 723 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 780
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 781 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 839
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 840 QLRKICNHPYMFQ 852
Score = 59 (25.8 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 271 SLLKPPSGNSPGNDSG-IPSLP-RKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTH 328
S + PP SPG + P +P + S I P ++P E LQ + + H
Sbjct: 122 SPVMPPQTQSPGQPAQPAPLVPLHQKQSRI--TPIQKPRGLDPVEILQEREYRLQARIAH 179
Query: 329 ALRKICNHPG 338
++++ N PG
Sbjct: 180 RIQELENLPG 189
Score = 39 (18.8 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 281 PGNDSGIPSLPRKSDSGIGSLPCKRP 306
PG +P+LP S S G P P
Sbjct: 10 PGMQQQMPTLPPPSVSATGPGPGPGP 35
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 311 (114.5 bits), Expect = 3.7e-24, P = 3.7e-24
Identities = 103/307 (33%), Positives = 152/307 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ I+L+ + +P
Sbjct: 179 LRDYQVRGLNWLIS----LYENGING-ILADEMGLGKTLQTISLLGYMKHYR--NIPGPH 231
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW EFKKW+ R +C + K + +V + P V + SYE
Sbjct: 232 MVLV--PKSTLHNWMSEFKKWVPTLRSVCL--IGDKEQRAAFVRDVLLPGEWDVCVTSYE 287
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
MLI+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 288 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 347
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ + N QK + L + R F+LRR
Sbjct: 348 SLLNFLLPDVFNSADDFDSWFD-------TNNCLGDQKLVERLH---MVLRP--FLLRRI 395
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--LSVTHALRK 661
+DV+ SL K+E + + +Q+ Y R ++ ++ D L++ LRK
Sbjct: 396 KADVEKSL-PPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRK 454
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 455 CCNHPYL 461
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 309 (113.8 bits), Expect = 3.8e-24, Sum P(2) = 3.8e-24
Identities = 100/315 (31%), Positives = 149/315 (47%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ LK +Q QG+ ++ L + +L G ILADEMGLGKT+Q IALI L+
Sbjct: 704 INGTLKHYQLQGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNG 758
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSRVSPVLIISY 487
P LI+ P S SNW EF KW Y + + S VL+ +Y
Sbjct: 759 PY----LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY 814
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQE 546
E +I+ + + +I DEGHR+KN KL +++ T +RILL+GTPLQN L E
Sbjct: 815 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 874
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + S F + F P + ++++ +R +L K F+LR
Sbjct: 875 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR--RLHKVLRPFLLR 932
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSV 655
R S L K E ++ C + LQ+ LY + + D + + ++
Sbjct: 933 RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT 992
Query: 656 THALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 993 IMQLRKICNHPYMFQ 1007
Score = 56 (24.8 bits), Expect = 3.8e-24, Sum P(2) = 3.8e-24
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 280 SPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGL 339
+PG S I L +K S I P ++P E LQ + + H ++++ N PG
Sbjct: 295 APGQPSPILQLQQKQ-SRIS--PIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGS 351
Query: 340 VQQPDV 345
+ PD+
Sbjct: 352 LP-PDL 356
Score = 40 (19.1 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 18/87 (20%), Positives = 31/87 (35%)
Query: 275 PPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKIC 334
PPS + P G P++ + P ++ E + C + +R
Sbjct: 50 PPSVSHPMPTMGSADFPQEGMHQMHK-PIDGMHDKGIVEDIHCGSMKGT-----GMRP-- 101
Query: 335 NHPGLVQQPDVMEEEGQWKHNPSGKPL 361
HPG+ M++ Q +P PL
Sbjct: 102 PHPGMGPPQSPMDQHSQGYMSPHPSPL 128
Score = 37 (18.1 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 17 YLDQEEQFDSTLSKENHNYVYPEPGGTEVSE 47
Y +++E+ +S+ ++ + +P EVSE
Sbjct: 626 YEEEDEEEESS-RQDTEEKILLDPNSEEVSE 655
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 314 (115.6 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 88/290 (30%), Positives = 146/290 (50%)
Query: 370 LSRVLKPHQRQGVSFLYE-----RVCDLAS-LDLEGAI-----LADEMGLGKTLQCIA-- 416
++R L+ +QR+G FLY R C L + L I LA + T + I
Sbjct: 118 INRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENN 177
Query: 417 LIWTLLRQGPYGMPVIRK--VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDY 474
+ LL+ P K LIV P S+ NW DE W G R+ H ++K+
Sbjct: 178 MPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHGSKKDNELLR 236
Query: 475 VYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRIL 534
+ R + + +YE L + + E+ +I DE HR+KN K+++ E+M + + RI
Sbjct: 237 LKQRKCEIALTTYETLRLCLEELNSLEWSAIIVDEAHRIKNPKARVTEVMKAVKCKVRIG 296
Query: 535 LSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSS 594
L+GT LQN+++E + + D+A PG+LGS F+K F +P+ + +T+ + + G
Sbjct: 297 LTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMH 356
Query: 595 QLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWD 644
+LAK+ +G+ LRRT + L K + ++ C T Q+++Y +E D
Sbjct: 357 RLAKKMSGWFLRRTKTLIKGQLPKKEDRMVYCSLTDFQKAVYQTVLETED 406
Score = 39 (18.8 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 653 LSVTHALRKICNHPGLVQ 670
LS L+K+ NH L+Q
Sbjct: 444 LSYLTVLQKVANHVALLQ 461
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 309 (113.8 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 100/315 (31%), Positives = 149/315 (47%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ LK +Q QG+ ++ L + +L G ILADEMGLGKT+Q IALI L+
Sbjct: 704 INGTLKHYQLQGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNG 758
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSRVSPVLIISY 487
P LI+ P S SNW EF KW Y + + S VL+ +Y
Sbjct: 759 PY----LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY 814
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQE 546
E +I+ + + +I DEGHR+KN KL +++ T +RILL+GTPLQN L E
Sbjct: 815 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 874
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + S F + F P + ++++ +R +L K F+LR
Sbjct: 875 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR--RLHKVLRPFLLR 932
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSV 655
R S L K E ++ C + LQ+ LY + + D + + ++
Sbjct: 933 RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT 992
Query: 656 THALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 993 IMQLRKICNHPYMFQ 1007
Score = 56 (24.8 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 280 SPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGL 339
+PG S I L +K S I P ++P E LQ + + H ++++ N PG
Sbjct: 295 APGQPSPILQLQQKQ-SRIS--PIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGS 351
Query: 340 VQQPDV 345
+ PD+
Sbjct: 352 LP-PDL 356
Score = 40 (19.1 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 18/87 (20%), Positives = 31/87 (35%)
Query: 275 PPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKIC 334
PPS + P G P++ + P ++ E + C + +R
Sbjct: 50 PPSVSHPMPTMGSADFPQEGMHQMHK-PIDGMHDKGIVEDIHCGSMKGT-----GMRP-- 101
Query: 335 NHPGLVQQPDVMEEEGQWKHNPSGKPL 361
HPG+ M++ Q +P PL
Sbjct: 102 PHPGMGPPQSPMDQHSQGYMSPHPSPL 128
Score = 37 (18.1 bits), Expect = 3.8e-22, Sum P(2) = 3.8e-22
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 17 YLDQEEQFDSTLSKENHNYVYPEPGGTEVSE 47
Y +++E+ +S+ ++ + +P EVSE
Sbjct: 626 YEEEDEEEESS-RQDTEEKILLDPNSEEVSE 655
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 313 (115.2 bits), Expect = 4.1e-24, P = 4.1e-24
Identities = 102/344 (29%), Positives = 180/344 (52%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
NPS + D+ + LK +Q +G+++L +L + G ILADEMGLGKT+Q
Sbjct: 501 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWL----ANLYEQGING-ILADEMGLGKTVQS 555
Query: 415 IALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK--- 470
IAL+ L R+ +G P LI++P+S +NW+ EF +++ ++ PY N ++
Sbjct: 556 IALLAHLAERENIWG-PF----LIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVI 610
Query: 471 ----AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524
++ +Y++ +P V+I SY+++++ + ++ ++ DE LK+ S ++++
Sbjct: 611 RRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKIL 670
Query: 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEA 584
R R+LL+GTP+QN + E + L F P + S EF + F + I ES + N +
Sbjct: 671 LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI-ESHAENKS-- 727
Query: 585 QKSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY--LR--- 638
++ E + S+L F+LRR DV+ L + K E L C+ T Q+ LY L+
Sbjct: 728 --AIDENQLSRLHMILKPFMLRRIKKDVENEL-SDKIEILTYCQLTSRQKLLYQALKNKI 784
Query: 639 CVE---------YWDARASRDSHLSVTHALRKICNHPGLVQQPD 673
+E A+ + S +++ RK+CNHP L ++ +
Sbjct: 785 SIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 828
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 316 (116.3 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 101/344 (29%), Positives = 179/344 (52%)
Query: 355 NPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
NPS + D+ + LK +Q +G+++L +L + G ILADEMGLGKT+Q
Sbjct: 504 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWL----ANLYEQGING-ILADEMGLGKTVQS 558
Query: 415 IALIWTLL-RQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNK--- 470
IAL+ L R+ +G P LI++P+S +NW+ EF +++ ++ PY N ++
Sbjct: 559 IALLAHLAERENIWG-PF----LIISPASTLNNWHQEFARFVPKFKVLPYWGNPHDRKVI 613
Query: 471 ----AEDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM 524
++ +Y++ +P V+I SY+++++ + ++ ++ DE LK+ S ++++
Sbjct: 614 RKFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKIL 673
Query: 525 TGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEA 584
R R+LL+GTP+QN + E + L F P + S EF + F + I ES + N +
Sbjct: 674 LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI-ESHAENKS-- 730
Query: 585 QKSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLYLRC---V 640
++ E + S+L F+LRR DV+ L + K E L+ C+ T Q+ LY +
Sbjct: 731 --AIDENQLSRLHMILKPFMLRRIKKDVENEL-SDKIEILMYCQQTSRQKLLYQALKNKI 787
Query: 641 EYWD-----------ARASRDSHLSVTHALRKICNHPGLVQQPD 673
D A+ + S +++ RK+CNHP L ++ +
Sbjct: 788 SIDDLLQSSMGTTQQAQTTTSSLMNLVMQFRKVCNHPELFERQE 831
Score = 48 (22.0 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 23/84 (27%), Positives = 34/84 (40%)
Query: 20 QEEQFDSTLSKENHNYVYPEPGGTEVSEAQNSNHATSVTRIFNVVYGKP-SAKKHKSWEQ 78
+E++ L K E +E S ++ +H T V F+ P S KKH S EQ
Sbjct: 219 EEKKLKGKLKKVKKKRRRDEDLSSEESP-EHHHHQTKVFAKFSHDTPPPGSKKKHMSIEQ 277
Query: 79 DGVLEISGTMAILKDTLGKVIDSK 102
++I+K L K K
Sbjct: 278 LNARRRKVWLSIVKKELPKAYKQK 301
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 320 (117.7 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 100/318 (31%), Positives = 156/318 (49%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
L+ LKP+Q +G+++ + +L + G ILADEMGLGKT+Q IA++ L +
Sbjct: 1158 LNADLKPYQLKGMTW----IVNLYDQGING-ILADEMGLGKTIQSIAVLAHLAEEKNIWG 1212
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--EDY-----VYSRVSP- 481
P LIVTP S NW +EF K++ ++ PY Q+ + Y +Y R SP
Sbjct: 1213 PF----LIVTPKSTLHNWKNEFAKFVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPF 1268
Query: 482 -VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPL 540
VLI SY +++R + + ++ DE H +K+ S ++ + N R R+LL+GTP+
Sbjct: 1269 HVLITSYNVIVRDEKYFHRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPI 1328
Query: 541 QNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRT 600
QN + E + L F P S EF + F + I N +Q L E + ++L
Sbjct: 1329 QNSMAELWALLHFIMPTFFDSHDEFAEWFSKDI-----ENHAMSQGGLNEHQLNRLHMIL 1383
Query: 601 AGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY------LRCVEY-----WDARAS 648
F+LRR DV+ + SK E + C T Q+ LY + E + + S
Sbjct: 1384 KPFMLRRIKRDVENEM-PSKTEVEVYCNLTHRQKKLYQSIRSNISITELLGGASFSEQGS 1442
Query: 649 RDSHLSVTHALRKICNHP 666
+ ++ RK+CNHP
Sbjct: 1443 MKALMNFVMQFRKVCNHP 1460
Score = 47 (21.6 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 4 KDLTNVLDILNEAYLDQEEQFDSTLSKENH 33
KD ++++LNE D + F +T + +H
Sbjct: 537 KDREQLMELLNEHESDSDVDFSTTPTLSSH 566
Score = 39 (18.8 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 101 SKVKILDEIKPGTSSLQSSPRLNASDNVQSS 131
SK K+ + +SSL SS AS + SS
Sbjct: 454 SKHKLSSSLS-SSSSLSSSTNQGASSAISSS 483
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 310 (114.2 bits), Expect = 4.7e-24, P = 4.7e-24
Identities = 102/307 (33%), Positives = 154/307 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ I+L+ + +P
Sbjct: 165 LRDYQVRGLNWLIS----LYENGING-ILADEMGLGKTLQTISLLGYMKHYR--NIPGPH 217
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW +EFK+W+ R +C + K++ +V + P V + SYE
Sbjct: 218 MVLV--PKSTLHNWMNEFKRWVPTLRAVCL--IGDKDQRAAFVRDVLLPGEWDVCVTSYE 273
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
MLI+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 274 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 333
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ + N QK + L + R F+LRR
Sbjct: 334 ALLNFLLPDVFNSSEDFDSWFD-------TNNCLGDQKLVERLH---MVLRP--FLLRRI 381
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--LSVTHALRK 661
+DV+ SL K+E + + +Q+ Y R ++ ++ D L++ LRK
Sbjct: 382 KADVEKSL-PPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRK 440
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 441 CCNHPYL 447
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 299 (110.3 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 94/292 (32%), Positives = 148/292 (50%)
Query: 357 SGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA 416
+G+P+ F V++ +Q +G+ +L R+ L + G ILADEMGLGKT+QCIA
Sbjct: 184 NGQPVPFQQPKHFTGGVMRWYQVEGMEWL--RM--LWENGING-ILADEMGLGKTVQCIA 238
Query: 417 LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--EDY 474
I ++++G G P L+ P S NW EFK++ YH Q+ + +
Sbjct: 239 TIALMIQRGVPG-PF----LVCGPLSTLPNWMAEFKRFTPEIPTMLYHGTQQERRILVKH 293
Query: 475 VYSR-----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
++ R + PV+I S+E+ +R T+ + + LI DEGHR+KN K +L + N
Sbjct: 294 IHERKGTLQIHPVVITSFEIAMRDRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNA 353
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
++LL+GTPLQN+L E + L +F P V L+ F F+ L + + ++
Sbjct: 354 DNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQN 413
Query: 590 ELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
L L + F+LRR SDV A + KRE ++ + Q+ Y V
Sbjct: 414 VLH--MLHQILTPFLLRRLKSDV-ALEVPPKREVVVYAPLSKKQEIFYTAIV 462
Score = 57 (25.1 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 659 LRKICNHPGLVQQP-DMMEEE 678
LRK CNHP L++ P D + +E
Sbjct: 545 LRKCCNHPYLIEYPIDPVTQE 565
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 309 (113.8 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 100/315 (31%), Positives = 149/315 (47%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ LK +Q QG+ ++ L + +L G ILADEMGLGKT+Q IALI L+
Sbjct: 720 INGTLKHYQLQGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNG 774
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSRVSPVLIISY 487
P LI+ P S SNW EF KW Y + + S VL+ +Y
Sbjct: 775 PY----LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY 830
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQE 546
E +I+ + + +I DEGHR+KN KL +++ T +RILL+GTPLQN L E
Sbjct: 831 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 890
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + S F + F P + ++++ +R +L K F+LR
Sbjct: 891 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR--RLHKVLRPFLLR 948
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSV 655
R S L K E ++ C + LQ+ LY + + D + + ++
Sbjct: 949 RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT 1008
Query: 656 THALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1009 IMQLRKICNHPYMFQ 1023
Score = 55 (24.4 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 280 SPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGL 339
+PG S + L +K S I P ++P E LQ + + H ++++ N PG
Sbjct: 311 APGQPSPVLQLQQKQ-SRIS--PIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGS 367
Query: 340 VQQPDV 345
+ PD+
Sbjct: 368 LP-PDL 372
Score = 40 (19.1 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 17 YLDQEEQFDSTLSKENHNYVYPEPGGTEVSE 47
Y +++E+ +S+ +E + +P EVSE
Sbjct: 642 YEEEDEEEESS-RQETEEKILLDPNSEEVSE 671
Score = 39 (18.8 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 336 HPGLVQQPDVMEEEGQWKHNPSGKPL 361
HPG+ M++ Q +P PL
Sbjct: 103 HPGMGPPQSPMDQHSQGYMSPHPSPL 128
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 304 (112.1 bits), Expect = 5.6e-24, Sum P(2) = 5.6e-24
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 745 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 798
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 799 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 855
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 856 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 915
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 916 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 973
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 974 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 1032
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1033 QLRKICNHPYMFQ 1045
Score = 60 (26.2 bits), Expect = 5.6e-24, Sum P(2) = 5.6e-24
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 271 SLLKPPSGNSPGNDSG-IPSLP-RKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTH 328
S + PP SPG + P +P + S I P ++P E LQ + + H
Sbjct: 315 SPVMPPQTQSPGQPAQPAPMVPLHQKQSRI--TPIQKPRGLDPVEILQEREYRLQARIAH 372
Query: 329 ALRKICNHPG 338
++++ N PG
Sbjct: 373 RIQELENLPG 382
Score = 40 (19.1 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 281 PGNDSGIPSLPRKSDSGIGSLPCKRP 306
PG +P+LP S S G P P
Sbjct: 211 PGMQPQMPALPPPSVSATGPGPSPGP 236
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 304 (112.1 bits), Expect = 5.6e-24, Sum P(2) = 5.6e-24
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 745 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 798
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 799 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 855
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 856 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 915
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 916 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 973
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 974 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 1032
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1033 QLRKICNHPYMFQ 1045
Score = 60 (26.2 bits), Expect = 5.6e-24, Sum P(2) = 5.6e-24
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 271 SLLKPPSGNSPGNDSG-IPSLP-RKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTH 328
S + PP SPG + P +P + S I P ++P E LQ + + H
Sbjct: 315 SPVMPPQTQSPGQPAQPAPMVPLHQKQSRI--TPIQKPRGLDPVEILQEREYRLQARIAH 372
Query: 329 ALRKICNHPG 338
++++ N PG
Sbjct: 373 RIQELENLPG 382
Score = 40 (19.1 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 281 PGNDSGIPSLPRKSDSGIGSLPCKRP 306
PG +P+LP S S G P P
Sbjct: 211 PGMQPQMPALPPPSVSATGPGPSPGP 236
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 304 (112.1 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 753 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 806
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 807 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 981
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 982 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 1040
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1041 QLRKICNHPYMFQ 1053
Score = 60 (26.2 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 271 SLLKPPSGNSPGNDSG-IPSLP-RKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTH 328
S + PP SPG + P +P + S I P ++P E LQ + + H
Sbjct: 323 SPVMPPQTQSPGQPAQPAPMVPLHQKQSRI--TPIQKPRGLDPVEILQEREYRLQARIAH 380
Query: 329 ALRKICNHPG 338
++++ N PG
Sbjct: 381 RIQELENLPG 390
Score = 39 (18.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 281 PGNDSGIPSLPRKSDSGIGSLPCKRP 306
PG +P+LP S S G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGP 236
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 304 (112.1 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 753 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 806
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 807 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 981
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 982 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 1040
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1041 QLRKICNHPYMFQ 1053
Score = 60 (26.2 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 271 SLLKPPSGNSPGNDSG-IPSLP-RKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTH 328
S + PP SPG + P +P + S I P ++P E LQ + + H
Sbjct: 323 SPVMPPQTQSPGQPAQPAPMVPLHQKQSRI--TPIQKPRGLDPVEILQEREYRLQARIAH 380
Query: 329 ALRKICNHPG 338
++++ N PG
Sbjct: 381 RIQELENLPG 390
Score = 39 (18.8 bits), Expect = 9.4e-22, Sum P(2) = 9.4e-22
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 281 PGNDSGIPSLPRKSDSGIGSLPCKRP 306
PG +P+LP S S G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGP 236
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 309 (113.8 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 100/315 (31%), Positives = 149/315 (47%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ LK +Q QG+ ++ L + +L G ILADEMGLGKT+Q IALI L+
Sbjct: 702 INGTLKHYQLQGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNG 756
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSRVSPVLIISY 487
P LI+ P S SNW EF KW Y + + S VL+ +Y
Sbjct: 757 PY----LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY 812
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQE 546
E +I+ + + +I DEGHR+KN KL +++ T +RILL+GTPLQN L E
Sbjct: 813 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 872
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + S F + F P + ++++ +R +L K F+LR
Sbjct: 873 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR--RLHKVLRPFLLR 930
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSV 655
R S L K E ++ C + LQ+ LY + + D + + ++
Sbjct: 931 RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT 990
Query: 656 THALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 991 IMQLRKICNHPYMFQ 1005
Score = 54 (24.1 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 280 SPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGL 339
+PG S I L +K S I P ++P E +Q + + H ++++ N PG
Sbjct: 293 APGQPSPILQLQQKQ-SRIS--PVQKPQGLDPVEIMQEREYRLQARIAHRIQELENLPGS 349
Query: 340 VQQPDV 345
+ PD+
Sbjct: 350 LP-PDL 354
Score = 43 (20.2 bits), Expect = 8.7e-23, Sum P(2) = 8.7e-23
Identities = 20/90 (22%), Positives = 36/90 (40%)
Query: 275 PPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLE---ESTAETLQCNQINSHLSVTHALR 331
PPS + P G P++ G+ + +P++ + E + C + A+R
Sbjct: 50 PPSVSHPMPSMGSADFPQE---GMHQM--HKPMDGMHDKGVEDIHCGSMKGT-----AMR 99
Query: 332 KICNHPGLVQQPDVMEEEGQWKHNPSGKPL 361
HPG+ M++ Q +P PL
Sbjct: 100 P--PHPGMGPPQSPMDQHSQGYMSPHPSPL 127
Score = 40 (19.1 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 17 YLDQEEQFDSTLSKENHNYVYPEPGGTEVSE 47
Y +++E+ +S+ +E + +P EVSE
Sbjct: 624 YEEEDEEEESS-RQETEEKILLDPNSEEVSE 653
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 304 (112.1 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 753 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 806
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 807 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 981
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 982 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 1040
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1041 QLRKICNHPYMFQ 1053
Score = 60 (26.2 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 271 SLLKPPSGNSPGNDSG-IPSLP-RKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTH 328
S + PP SPG + P +P + S I P ++P E LQ + + H
Sbjct: 323 SPVMPPQTQSPGQPAQPAPMVPLHQKQSRI--TPIQKPRGLDPVEILQEREYRLQARIAH 380
Query: 329 ALRKICNHPG 338
++++ N PG
Sbjct: 381 RIQELENLPG 390
Score = 39 (18.8 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 281 PGNDSGIPSLPRKSDSGIGSLPCKRP 306
PG +P+LP S S G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGP 236
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 311 (114.5 bits), Expect = 6.4e-24, P = 6.4e-24
Identities = 100/343 (29%), Positives = 174/343 (50%)
Query: 346 MEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADE 405
+EE+ + K +VDV V L L+ +Q+QG+++L L + G ILADE
Sbjct: 668 VEEDAETKVQEEQLSVVDVPVPSLLRGNLRTYQKQGLNWL----ASLYNNHTNG-ILADE 722
Query: 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
MGLGKT+Q I+L+ L + P LIV P+S+ NW EFK++ ++ Y+
Sbjct: 723 MGLGKTIQTISLLAYLACEKENWGPH----LIVVPTSVLLNWEMEFKRFAPGFKVLTYYG 778
Query: 466 N---QKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE 522
+ +K K + + V I+SY+++++ + + ++ DE H +KN +S ++
Sbjct: 779 SPQQRKEKRKGWNKPDAFHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQ 838
Query: 523 LMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANP-----G--VLG--SLREFRKNFEEPI 573
+ N ++R+LL+GTPLQN+L E + L F P G V G L F++ F P+
Sbjct: 839 ALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPV 898
Query: 574 LESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQ 632
+ Q + ++L + ++LRR +DV+ + +K E ++ C+ + Q
Sbjct: 899 DKIIETGQNFGQDKETKKTVAKLHQVLRPYLLRRLKADVEKQM-PAKYEHIVYCKLSKRQ 957
Query: 633 QSLYLRCVEYWDARASRDS--HLSVTHAL---RKICNHPGLVQ 670
+ LY + +A+ S +S+ + L RK+CNHP L +
Sbjct: 958 RFLYDDFMSRAQTKATLASGNFMSIVNCLMQLRKVCNHPNLFE 1000
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 309 (113.8 bits), Expect = 6.9e-24, P = 6.9e-24
Identities = 102/313 (32%), Positives = 159/313 (50%)
Query: 369 FLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYG 428
+++ L+P+Q QGV++L L + G ILADEMGLGKTLQ I+ + LR Y
Sbjct: 191 YVNGQLRPYQIQGVNWLVS----LHKNKIAG-ILADEMGLGKTLQTISFLG-YLR---YI 241
Query: 429 MPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS----PVLI 484
+ L++ P S +NW E +W +++ +AE + ++ V+I
Sbjct: 242 EKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAE-LIQKKLLGCDFDVVI 300
Query: 485 ISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544
SYE++IR + ++ +I DE HR+KN +S L +++ R R+L++GTPLQN+L
Sbjct: 301 ASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNL 360
Query: 545 QEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E + L +F P + ++F F S STE + + QL F+
Sbjct: 361 HELWALLNFLLPDIFSDAQDFDDWF--------SSESTEEDQ---DKIVKQLHTVLQPFL 409
Query: 605 LRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCVEY-WDA----RASRDSH---LSV 655
LRR SDV+ SLL K+E L + +Q+ Y + +E DA S++S L++
Sbjct: 410 LRRIKSDVETSLL-PKKELNLYVGMSSMQKKWYKKILEKDLDAVNGSNGSKESKTRLLNI 468
Query: 656 THALRKICNHPGL 668
LRK CNHP L
Sbjct: 469 MMQLRKCCNHPYL 481
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 311 (114.5 bits), Expect = 7.0e-24, P = 7.0e-24
Identities = 101/351 (28%), Positives = 177/351 (50%)
Query: 344 DVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILA 403
D M++ NP+ ++++ L+ LK +Q +G+++L +L + G ILA
Sbjct: 768 DTMDDSELNFQNPTSLGDIEISQPTMLTAKLKEYQLKGLNWLV----NLYEQGING-ILA 822
Query: 404 DEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPY 463
DEMGLGKT+Q I+++ L P L++ P+S NW E K++ ++ PY
Sbjct: 823 DEMGLGKTIQSISVMAYLAEVHNIWGPF----LVIAPASTLHNWQQEITKFVPNIKVLPY 878
Query: 464 HVNQKNKA--------EDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRL 513
N K++ + Y++ S VL+ SY++++ Q ++ +I DE +
Sbjct: 879 WGNAKDRKILRKFWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAI 938
Query: 514 KNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPI 573
K+ +S ++ + G + R R+LL+GTP+QN++QE + L F P + S EF + F + I
Sbjct: 939 KSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDI 998
Query: 574 LESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQ 633
ES + ++T+ + +LR + + F+LRR L K E + C T Q+
Sbjct: 999 -ESHAQSNTKLNED--QLRRLHMILKP--FMLRRVKKHVQQELGDKVEKDVFCDLTYRQR 1053
Query: 634 SLY--LRC-VEYWDA--RAS----RDSH--LSVTHALRKICNHPGLVQQPD 673
+LY LR V D +A+ DS +++ RK+CNHP L ++ +
Sbjct: 1054 ALYTNLRNRVSIMDLIEKAAVGDETDSTTLMNLVMQFRKVCNHPDLFERAE 1104
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 304 (112.1 bits), Expect = 7.3e-24, Sum P(2) = 7.3e-24
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 753 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 806
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 807 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 981
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 982 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 1040
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1041 QLRKICNHPYMFQ 1053
Score = 59 (25.8 bits), Expect = 7.3e-24, Sum P(2) = 7.3e-24
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 271 SLLKPPSGNSPGNDSG-IPSLP-RKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTH 328
S + PP SPG + P +P + S I P ++P E LQ + + H
Sbjct: 323 SPVMPPQTQSPGQPAQPAPLVPLHQKQSRI--TPIQKPRGLDPVEILQEREYRLQARIAH 380
Query: 329 ALRKICNHPG 338
++++ N PG
Sbjct: 381 RIQELENLPG 390
Score = 39 (18.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 281 PGNDSGIPSLPRKSDSGIGSLPCKRP 306
PG +P+LP S S G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGP 236
Score = 39 (18.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 268 DEKSLLKP-PSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETL 315
D+ S P P G S S +P+ S + S P PL+ S + L
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQAL 162
Score = 38 (18.4 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 336 HPGLVQQPDVMEEEGQWKHNPSG 358
H G+ P M++ Q +P G
Sbjct: 103 HTGMAPPPSPMDQHSQGYPSPLG 125
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 304 (112.1 bits), Expect = 7.3e-24, Sum P(2) = 7.3e-24
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 753 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 806
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 807 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 981
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 982 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 1040
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1041 QLRKICNHPYMFQ 1053
Score = 59 (25.8 bits), Expect = 7.3e-24, Sum P(2) = 7.3e-24
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 271 SLLKPPSGNSPGNDSG-IPSLP-RKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTH 328
S + PP SPG + P +P + S I P ++P E LQ + + H
Sbjct: 323 SPVMPPQTQSPGQPAQPAPLVPLHQKQSRI--TPIQKPRGLDPVEILQEREYRLQARIVH 380
Query: 329 ALRKICNHPG 338
++++ N PG
Sbjct: 381 RIQELENLPG 390
Score = 39 (18.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 281 PGNDSGIPSLPRKSDSGIGSLPCKRP 306
PG +P+LP S S G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGP 236
Score = 39 (18.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 268 DEKSLLKP-PSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETL 315
D+ S P P G S S +P+ S + S P PL+ S + L
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQAL 162
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 304 (112.1 bits), Expect = 7.3e-24, Sum P(2) = 7.3e-24
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 753 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 806
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 807 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 981
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 982 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 1040
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1041 QLRKICNHPYMFQ 1053
Score = 59 (25.8 bits), Expect = 7.3e-24, Sum P(2) = 7.3e-24
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 271 SLLKPPSGNSPGNDSG-IPSLP-RKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTH 328
S + PP SPG + P +P + S I P ++P E LQ + + H
Sbjct: 323 SPVMPPQTQSPGQPAQPAPLVPLHQKQSRI--TPIQKPRGLDPVEILQEREYRLQARIAH 380
Query: 329 ALRKICNHPG 338
++++ N PG
Sbjct: 381 RIQELENLPG 390
Score = 39 (18.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 281 PGNDSGIPSLPRKSDSGIGSLPCKRP 306
PG +P+LP S S G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGP 236
Score = 39 (18.8 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 268 DEKSLLKP-PSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETL 315
D+ S P P G S S +P+ S + S P PL+ S + L
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQAL 162
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 304 (112.1 bits), Expect = 7.3e-24, Sum P(2) = 7.3e-24
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 753 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 806
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 807 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 863
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 981
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 982 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 1040
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1041 QLRKICNHPYMFQ 1053
Score = 59 (25.8 bits), Expect = 7.3e-24, Sum P(2) = 7.3e-24
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 271 SLLKPPSGNSPGNDSG-IPSLP-RKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTH 328
S + PP SPG + P +P + S I P ++P E LQ + + H
Sbjct: 323 SPVMPPQTQSPGQPAQPAPLVPLHQKQSRI--TPIQKPRGLDPVEILQEREYRLQARIAH 380
Query: 329 ALRKICNHPG 338
++++ N PG
Sbjct: 381 RIQELENLPG 390
Score = 39 (18.8 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 281 PGNDSGIPSLPRKSDSGIGSLPCKRP 306
PG +P+LP S S G P P
Sbjct: 211 PGMQQQMPTLPPPSVSATGPGPGPGP 236
Score = 39 (18.8 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 268 DEKSLLKP-PSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETL 315
D+ S P P G S S +P+ S + S P PL+ S + L
Sbjct: 114 DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQAL 162
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 233 (87.1 bits), Expect = 7.8e-24, Sum P(3) = 7.8e-24
Identities = 71/206 (34%), Positives = 96/206 (46%)
Query: 470 KAEDYVYSRV---SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTG 526
KA V RV VL+ +Y L ++ E+ I DEGH+++N + +
Sbjct: 513 KAARKVVKRVVEEGHVLVTTYSGLQSYASLLIPVEWGGTILDEGHKIRNPNTSITMHAKE 572
Query: 527 LNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQK 586
L RI+LSGTP+QN+L E + L DF P LG+L FR FE PI + N++ Q
Sbjct: 573 LRTPHRIILSGTPMQNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQV 632
Query: 587 SLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY---LRCVEY 642
+ L + ++L+R DV A L K E +L CR T Q+ Y L E
Sbjct: 633 QTAAKCAETLKDAISPYLLQRFKIDVAADL-PKKSEQVLFCRLTKPQRQAYEAFLGSEEM 691
Query: 643 WDARASRDSHLSVTHALRKICNHPGL 668
R L LRKICNHP L
Sbjct: 692 QSILRGRRQVLYGVDILRKICNHPDL 717
Score = 136 (52.9 bits), Expect = 7.8e-24, Sum P(3) = 7.8e-24
Identities = 47/167 (28%), Positives = 83/167 (49%)
Query: 313 ETLQCNQINSHLSVTHALRKICNHPGLV---QQPDVME------EEGQW-KHNPSGKPL- 361
E L +++ + +S A RK P + Q PD+ E E+ +W K +P+ L
Sbjct: 324 EKLYQSRLQNWVSRRSAARKRARQPRELDTNQVPDIGEADFRDSEDEEWFKPHPTQPDLH 383
Query: 362 VD--VTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIW 419
+D + G + +L +Q+ GV +++E L + G I+ DEMGLGKT+Q IA +
Sbjct: 384 LDNGYRIPGDIHPLLFDYQKTGVQWMWE----LHQQQV-GGIIGDEMGLGKTIQAIAFLA 438
Query: 420 TLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN 466
L Y + + +++V P+++ W +EF +W R+ H +
Sbjct: 439 GL----HYSKRLTKPIIVVCPATVMKQWVNEFHRWWPPFRVSILHTS 481
Score = 53 (23.7 bits), Expect = 7.9e-16, Sum P(2) = 7.9e-16
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN 226
+++V P+++ W +EF +W R+ H +
Sbjct: 450 IIVVCPATVMKQWVNEFHRWWPPFRVSILHTS 481
Score = 40 (19.1 bits), Expect = 7.8e-24, Sum P(3) = 7.8e-24
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 166 HAKTEVNPLILPKPIVDHQEKNRRSYILRVLIVTPSS 202
H + E+N + P ++RR Y++R +TP S
Sbjct: 133 HQEQEMN--MEPSGTGRMPNESRRDYLIRTGKITPFS 167
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 308 (113.5 bits), Expect = 7.9e-24, P = 7.9e-24
Identities = 102/307 (33%), Positives = 152/307 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ I+L+ + +P
Sbjct: 179 LRDYQVRGLNWLIS----LYENGING-ILADEMGLGKTLQTISLLGYMKHYR--NIPGPH 231
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW EFK+W+ R +C + K + +V + P V + SYE
Sbjct: 232 MVLV--PKSTLHNWMSEFKRWVPTLRSVCL--IGDKEQRAAFVRDVLLPGEWDVCVTSYE 287
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
MLI+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 288 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 347
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ + N QK + L + R F+LRR
Sbjct: 348 SLLNFLLPDVFNSADDFDSWFD-------TNNCLGDQKLVERLH---MVLRP--FLLRRI 395
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--LSVTHALRK 661
+DV+ SL K+E + + +Q+ Y R ++ ++ D L++ LRK
Sbjct: 396 KADVEKSL-PPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRK 454
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 455 CCNHPYL 461
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 308 (113.5 bits), Expect = 7.9e-24, P = 7.9e-24
Identities = 102/307 (33%), Positives = 152/307 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ I+L+ + +P
Sbjct: 180 LRDYQVRGLNWLIS----LYENGING-ILADEMGLGKTLQTISLLGYMKHYR--NIPGPH 232
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW EFK+W+ R +C + K + +V + P V + SYE
Sbjct: 233 MVLV--PKSTLHNWMSEFKRWVPTLRSVCL--IGDKEQRAAFVRDVLLPGEWDVCVTSYE 288
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
MLI+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 289 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 348
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ + N QK + L + R F+LRR
Sbjct: 349 SLLNFLLPDVFNSADDFDSWFD-------TNNCLGDQKLVERLH---MVLRP--FLLRRI 396
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--LSVTHALRK 661
+DV+ SL K+E + + +Q+ Y R ++ ++ D L++ LRK
Sbjct: 397 KADVEKSL-PPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRK 455
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 456 CCNHPYL 462
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 308 (113.5 bits), Expect = 7.9e-24, P = 7.9e-24
Identities = 102/307 (33%), Positives = 152/307 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ I+L+ + +P
Sbjct: 180 LRDYQVRGLNWLIS----LYENGING-ILADEMGLGKTLQTISLLGYMKHYR--NIPGPH 232
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW EFK+W+ R +C + K + +V + P V + SYE
Sbjct: 233 MVLV--PKSTLHNWMSEFKRWVPTLRSVCL--IGDKEQRAAFVRDVLLPGEWDVCVTSYE 288
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
MLI+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 289 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 348
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ + N QK + L + R F+LRR
Sbjct: 349 SLLNFLLPDVFNSADDFDSWFD-------TNNCLGDQKLVERLH---MVLRP--FLLRRI 396
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--LSVTHALRK 661
+DV+ SL K+E + + +Q+ Y R ++ ++ D L++ LRK
Sbjct: 397 KADVEKSL-PPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRK 455
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 456 CCNHPYL 462
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 308 (113.5 bits), Expect = 7.9e-24, P = 7.9e-24
Identities = 102/307 (33%), Positives = 152/307 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ I+L+ + +P
Sbjct: 180 LRDYQVRGLNWLIS----LYENGING-ILADEMGLGKTLQTISLLGYMKHYR--NIPGPH 232
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW EFK+W+ R +C + K + +V + P V + SYE
Sbjct: 233 MVLV--PKSTLHNWMSEFKRWVPTLRSVCL--IGDKEQRAAFVRDVLLPGEWDVCVTSYE 288
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
MLI+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 289 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 348
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ + N QK + L + R F+LRR
Sbjct: 349 SLLNFLLPDVFNSADDFDSWFD-------TNNCLGDQKLVERLH---MVLRP--FLLRRI 396
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--LSVTHALRK 661
+DV+ SL K+E + + +Q+ Y R ++ ++ D L++ LRK
Sbjct: 397 KADVEKSL-PPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRK 455
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 456 CCNHPYL 462
>UNIPROTKB|B5MDQ0 [details] [associations]
symbol:ERCC6L "FLJ20105 protein, isoform CRA_a"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135749 EMBL:CH471213
HOGENOM:HOG000074172 HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD
UniGene:Hs.47558 HGNC:HGNC:20794 IPI:IPI00873388 SMR:B5MDQ0
IntAct:B5MDQ0 STRING:B5MDQ0 Ensembl:ENST00000373657 Uniprot:B5MDQ0
Length = 1127
Score = 294 (108.6 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 76/217 (35%), Positives = 119/217 (54%)
Query: 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
MGLGKT+Q IA + G + ++ VL++ P++L + W EF KW R+ +H
Sbjct: 1 MGLGKTVQIIAFL-----SGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHG 55
Query: 466 NQKNKAEDYVYSRVSP---VLIISYEMLIRAYQTIVD---TEF--DLLICDEGHRLKNGK 517
K++ + +R+ V+I +Y+MLI +Q + EF D +I DE H++K
Sbjct: 56 PSKDERTRNL-NRIQQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSS 114
Query: 518 SKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPG-VLGSLREFRKNFEEPILES 576
+K + R+LL+GTP+QN+LQE + L DFA G +LG+L+ F+ +E PI +
Sbjct: 115 TKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRA 174
Query: 577 RSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS-DVQ 612
R ++T +K+LG S L + LRRT DVQ
Sbjct: 175 REKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQ 211
Score = 64 (27.6 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 616 LNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SRDSHLSVTHALRKICNHPGLV 669
L+ K + ++ R PLQ+ +Y + V + S L+ L+K+C+HP L+
Sbjct: 238 LSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 294
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 320 (117.7 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 94/273 (34%), Positives = 138/273 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIW--TLLRQGPY---G 428
L+ +Q+ GV++L L L G IL D+MGLGKTLQ I +I R+ Y G
Sbjct: 1377 LRKYQQDGVNWL----AFLNKYKLHG-ILCDDMGLGKTLQTICIIAGDDYHRRVNYQEKG 1431
Query: 429 MPVIRKV--LIVTPSSLTSNWNDEFKKWLGLTRMCP--YHVNQKNKAEDYVYSRVSPVLI 484
P + L++ P SL +W E KK+ + M P Y N + + VLI
Sbjct: 1432 TPDFAPLPSLVICPPSLVGHWFYEIKKFCSDSTMKPMTYMGNPSERQAQRSKFKDHNVLI 1491
Query: 485 ISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544
+SY+++ + + F+ I DEGH +KN K+KL + L R++LSGTP+QN++
Sbjct: 1492 MSYDIMRNDIDILSEMHFNYCILDEGHIIKNAKTKLTQAAKRLQSNHRLILSGTPIQNNV 1551
Query: 545 QEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E + L DF PG LG+ + F + + +PIL S+ P + + G L L ++ F+
Sbjct: 1552 LELWSLFDFLMPGFLGTEKLFNELYSKPILASKDPKCSTKDQEAGVLAMEALHRQVLPFL 1611
Query: 605 LRRTS-DVQASLLNSKRETLLVCRATPLQQSLY 636
LRR DV A L K C +PLQ LY
Sbjct: 1612 LRRLKEDVLADL-PPKIIQDRYCNLSPLQIRLY 1643
Score = 51 (23.0 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 659 LRKICNHPGLVQQPD 673
LRK+C HP V P+
Sbjct: 1693 LRKLCGHPSFVLNPE 1707
Score = 39 (18.8 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 258 VDTEFDLLICDEKSLLKPPSGNSPGNDSGIP-SLP---RKSDSGIGSLPCKRPLEE 309
+ TE+ + E S L S N P S I SL RK ++ + L R L +
Sbjct: 967 IQTEYHTQVLSEMSTLLIVSNNIPPKVSAIVRSLMLAIRKDENPLYQLRAARSLSQ 1022
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 313 (115.2 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 101/306 (33%), Positives = 155/306 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 162 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 214
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
VL+ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 215 MVLV--PKSTLHNWMNEFKRWVPSLRVICF-VGDKDARAAFIRDEMMPGEWDVCVTSYEM 271
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 272 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 331
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 332 LLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRIK 379
Query: 609 SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRKI 662
+DV+ SL K+E + + +Q+ Y ++ ++ ++ D L++ LRK
Sbjct: 380 TDVEKSL-PPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKC 438
Query: 663 CNHPGL 668
CNHP L
Sbjct: 439 CNHPYL 444
Score = 42 (19.8 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 177 PKPIVDHQEKNRRSYILRVLIVTPSS 202
P P +EKN S+ L++ P S
Sbjct: 29 PGPSTSQEEKNVSSFQLKLAAKAPKS 54
>UNIPROTKB|G4MNF9 [details] [associations]
symbol:MGG_06945 "Helicase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:CM001231 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003709685.1 ProteinModelPortal:G4MNF9
EnsemblFungi:MGG_06945T0 GeneID:2685118 KEGG:mgr:MGG_06945
Uniprot:G4MNF9
Length = 1103
Score = 307 (113.1 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 88/297 (29%), Positives = 149/297 (50%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL-RQGPYG 428
+++ L+ +Q GVSF++E A + G IL D+MGLGKT+Q A + + G +
Sbjct: 190 IAQYLRDYQVDGVSFMHE-----AFVYQRGCILGDDMGLGKTVQVAAFLTAAFGKTGDFR 244
Query: 429 ----MPVIR-------KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYS 477
M ++ KVL+V PSS+ NW E +W G ++ YH K+ D S
Sbjct: 245 DSKRMRKVKRLGRRYYKVLVVCPSSVMENWRQELARW-GWWKVESYHGPGKDDVLDTAKS 303
Query: 478 RVSPVLIISYEMLIRAYQTIVDT-EFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLS 536
V++ + R + V+T +D ++ DE H +K +S++ + MT +N RI L+
Sbjct: 304 GRLEVMLTT-PATYRLQKERVNTVSWDAVVVDECHNIKERRSEITKAMTEVNALCRIGLT 362
Query: 537 GTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQL 596
GT +QN +E + L ++ NPG G+ E++ + P+ +S N+T + S+ + +L
Sbjct: 363 GTAIQNKYEELWTLLNWTNPGRFGTFGEWKTSISRPLTLGQSHNATLQELSMARKTAKKL 422
Query: 597 AKRTA-GFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDSH 652
+ + LRR + A L KR+ ++ C T LQ + Y R + + R SH
Sbjct: 423 VQNLLPDYFLRRMKSLIAHQLPKKRDRVVFCPLTDLQTTAYERFIASEEVELVRRSH 479
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 296 (109.3 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 95/292 (32%), Positives = 145/292 (49%)
Query: 357 SGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA 416
+G+P+ F V++ +Q +G+ +L R+ L + G ILADEMGLGKT+QCIA
Sbjct: 206 NGQPVPFQQPKHFTGGVMRWYQVEGMEWL--RM--LWENGING-ILADEMGLGKTVQCIA 260
Query: 417 LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ--KNKAEDY 474
I ++++G G P L+ P S NW EFK++ YH Q + K
Sbjct: 261 TIALMIQRGVPG-PF----LVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRN 315
Query: 475 VYSR-----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
+Y R + PV+I S+E+ +R + + LI DEGHR+KN K +L + N
Sbjct: 316 IYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNA 375
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
++LL+GTPLQN+L E + L +F P V L+ F F+ L + + ++
Sbjct: 376 DNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQN 435
Query: 590 ELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
L L + F+LRR SDV A + KRE ++ + Q+ Y V
Sbjct: 436 VLH--MLHQILTPFLLRRLKSDV-ALEVPPKREVVVYAPLSKKQEIFYTAIV 484
Score = 57 (25.1 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 659 LRKICNHPGLVQQP-DMMEEE 678
LRK CNHP L++ P D + +E
Sbjct: 567 LRKCCNHPYLIEYPIDPVTQE 587
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 296 (109.3 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 93/292 (31%), Positives = 148/292 (50%)
Query: 357 SGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA 416
+G+P+ F V++ +Q +G+ +L R+ L + G ILADEMGLGKT+QCIA
Sbjct: 206 NGQPVPFQQPKHFTGGVMRWYQVEGMEWL--RM--LWENGING-ILADEMGLGKTVQCIA 260
Query: 417 LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ--KNKAEDY 474
I ++++G G P L+ P S NW EF+++ YH +Q + K ++
Sbjct: 261 TIALMIQRGVPG-PF----LVCGPLSTLPNWMAEFQRFTPEIPTMLYHGSQQERRKLVNH 315
Query: 475 VYSR-----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
++ R + PV+I S+E+ +R + + LI DEGHR+KN K +L + N
Sbjct: 316 IHKRKGTLQIHPVVITSFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNA 375
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
++LL+GTPLQN+L E + L +F P V L+ F F+ L + + ++
Sbjct: 376 DNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQN 435
Query: 590 ELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
L L + F+LRR SDV A + KRE ++ + Q+ Y V
Sbjct: 436 VLH--MLHQILTPFLLRRLKSDV-ALEVPPKREVVVYAPLSKKQEVFYTAIV 484
Score = 57 (25.1 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 659 LRKICNHPGLVQQP-DMMEEE 678
LRK CNHP L++ P D + +E
Sbjct: 567 LRKCCNHPYLIEYPIDPVTQE 587
>UNIPROTKB|K7GSF7 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 EMBL:CU928419 EMBL:CU693469 EMBL:CU928840
EMBL:FP102832 Ensembl:ENSSSCT00000036604 Uniprot:K7GSF7
Length = 2372
Score = 238 (88.8 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 52/142 (36%), Positives = 79/142 (55%)
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ +VD D ++CDEGH LKN S + + M + R+RI+L+GTPLQN+L E+ + +F
Sbjct: 1661 KALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFI 1720
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
+LGS++EFR F PI + +ST + + R+ L + AG + R+
Sbjct: 1721 KENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTK 1780
Query: 615 LLNSKRETLLVCRATPLQQSLY 636
L K E +L R TP+Q LY
Sbjct: 1781 FLPPKHEYVLAVRMTPIQCKLY 1802
Score = 142 (55.0 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 52/158 (32%), Positives = 76/158 (48%)
Query: 345 VMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GA 400
V++E+ + K +PLV V + + LKPHQ GV F+++ C+ + G
Sbjct: 1493 VLDEDEETK-----EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVKKTKKSPGSGC 1545
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTR 459
ILA MGLGKTLQ ++ + T+L L+V P + NW +EF+KW GL
Sbjct: 1546 ILAHCMGLGKTLQVVSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLKD 1602
Query: 460 MCPYHVNQ----KNKAE-DYVYSRVSP---VLIISYEM 489
V++ K E Y+ R V+II YEM
Sbjct: 1603 DEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIGYEM 1640
Score = 61 (26.5 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 196 LIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ----KNKAE-DYVYSRVSP---VLIIS 246
L+V P + NW +EF+KW GL V++ K E Y+ R V+II
Sbjct: 1578 LVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIG 1637
Query: 247 YEM 249
YEM
Sbjct: 1638 YEM 1640
Score = 37 (18.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 290 LPRKSDSGIGSLPCKRPLEESTAETLQCN 318
LP K DS S K E S E +CN
Sbjct: 1028 LPGKRDSCDSSEDKKSKNETSGREKKRCN 1056
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 309 (113.8 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 100/315 (31%), Positives = 149/315 (47%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ LK +Q QG+ ++ L + +L G ILADEMGLGKT+Q IALI L+
Sbjct: 727 INGTLKHYQLQGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNG 781
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSRVSPVLIISY 487
P LI+ P S SNW EF KW Y + + S VL+ +Y
Sbjct: 782 PY----LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY 837
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQE 546
E +I+ + + +I DEGHR+KN KL +++ T +RILL+GTPLQN L E
Sbjct: 838 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 897
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + S F + F P + ++++ +R +L K F+LR
Sbjct: 898 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR--RLHKVLRPFLLR 955
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSV 655
R S L K E ++ C + LQ+ LY + + D + + ++
Sbjct: 956 RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT 1015
Query: 656 THALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1016 IMQLRKICNHPYMFQ 1030
Score = 50 (22.7 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 280 SPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGL 339
+PG S + L +K S I P ++P E LQ + + H ++++ + PG
Sbjct: 318 APGQPSPVLQLQQKQ-SRIS--PIQKPQGLDPVEILQEREYRLQARIAHRIQELESLPGS 374
Query: 340 VQQPDV 345
+ PD+
Sbjct: 375 LP-PDL 379
Score = 44 (20.5 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 20/89 (22%), Positives = 35/89 (39%)
Query: 275 PPSGNSPGNDSGIPSLPRKSDSGIGSL--PCKRPLEESTAETLQCNQINSHLSVTHALRK 332
PPS + P + G P++ G+ L P ++ E + C + ++R
Sbjct: 50 PPSVSHPMSTMGSADFPQE---GLHQLHKPMDGIHDKGIVEDVHCGSMKGT-----SMRP 101
Query: 333 ICNHPGLVQQPDVMEEEGQWKHNPSGKPL 361
HPG+ M++ Q +P PL
Sbjct: 102 --PHPGMGPPQSPMDQHSQGYMSPHPSPL 128
Score = 42 (19.8 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 14 NEAYLDQEEQFDSTLSKENHNYVYPEPGGTEVSE 47
+E+ ++E++ + + +E + +P EVSE
Sbjct: 645 SESDYEEEDEEEESSRQETEEKILLDPNSEEVSE 678
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 305 (112.4 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 100/307 (32%), Positives = 154/307 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G++++ L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 107 LRDYQVRGLNWMIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 159
Query: 434 KVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW +EFK+W+ L +C + K+ ++ + P V + SYE
Sbjct: 160 MVLV--PKSTLHNWMNEFKRWVPSLRAVCL--IGDKDARAAFIRDVMMPGEWDVCVTSYE 215
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
M+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 216 MVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 275
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 276 ALLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRI 323
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--LSVTHALRK 661
++V+ SL K+E + + +Q+ Y R ++ ++ D L++ LRK
Sbjct: 324 KAEVEKSL-PPKKEVKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRK 382
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 383 CCNHPYL 389
>UNIPROTKB|F1MQ85 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070087 "chromo shadow domain binding" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:DAAA02072507 EMBL:DAAA02072500 EMBL:DAAA02072501
EMBL:DAAA02072502 EMBL:DAAA02072503 EMBL:DAAA02072504
EMBL:DAAA02072505 EMBL:DAAA02072506 IPI:IPI01003328
Ensembl:ENSBTAT00000061308 ArrayExpress:F1MQ85 Uniprot:F1MQ85
Length = 2473
Score = 238 (88.8 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 52/142 (36%), Positives = 79/142 (55%)
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ +VD D ++CDEGH LKN S + + M + R+RI+L+GTPLQN+L E+ + +F
Sbjct: 1686 KALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFI 1745
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
+LGS++EFR F PI + +ST + + R+ L + AG + R+
Sbjct: 1746 KENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTK 1805
Query: 615 LLNSKRETLLVCRATPLQQSLY 636
L K E +L R TP+Q LY
Sbjct: 1806 FLPPKHEYVLAVRMTPIQCKLY 1827
Score = 142 (55.0 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 52/158 (32%), Positives = 76/158 (48%)
Query: 345 VMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GA 400
V++E+ + K +PLV V + + LKPHQ GV F+++ C+ + G
Sbjct: 1518 VLDEDEETK-----EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVKKTKKSPGSGC 1570
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTR 459
ILA MGLGKTLQ ++ + T+L L+V P + NW +EF+KW GL
Sbjct: 1571 ILAHCMGLGKTLQVVSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLKD 1627
Query: 460 MCPYHVNQ----KNKAE-DYVYSRVSP---VLIISYEM 489
V++ K E Y+ R V+II YEM
Sbjct: 1628 DEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIGYEM 1665
Score = 61 (26.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 196 LIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ----KNKAE-DYVYSRVSP---VLIIS 246
L+V P + NW +EF+KW GL V++ K E Y+ R V+II
Sbjct: 1603 LVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIG 1662
Query: 247 YEM 249
YEM
Sbjct: 1663 YEM 1665
Score = 37 (18.1 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 240
+IV P + + D+FK +R N K + ED ++ VS
Sbjct: 120 VIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLKKRGEDGLHGIVS 164
Score = 37 (18.1 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 436 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480
+IV P + + D+FK +R N K + ED ++ VS
Sbjct: 120 VIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLKKRGEDGLHGIVS 164
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 304 (112.1 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 5 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 58
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 59 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 115
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 116 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 175
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 176 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 233
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 234 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 292
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 293 QLRKICNHPYMFQ 305
>UNIPROTKB|F1PKC1 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10779 GeneTree:ENSGT00550000074619 CTD:546
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 EMBL:AAEX03026550
EMBL:AAEX03026551 EMBL:AAEX03026552 EMBL:AAEX03026553
EMBL:AAEX03026554 EMBL:AAEX03026555 EMBL:AAEX03026556
RefSeq:XP_538084.2 Ensembl:ENSCAFT00000027324 GeneID:480963
KEGG:cfa:480963 Uniprot:F1PKC1
Length = 2489
Score = 238 (88.8 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 52/142 (36%), Positives = 79/142 (55%)
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ +VD D ++CDEGH LKN S + + M + R+RI+L+GTPLQN+L E+ + +F
Sbjct: 1702 KALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFI 1761
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
+LGS++EFR F PI + +ST + + R+ L + AG + R+
Sbjct: 1762 KENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTK 1821
Query: 615 LLNSKRETLLVCRATPLQQSLY 636
L K E +L R TP+Q LY
Sbjct: 1822 FLPPKHEYVLAVRMTPIQCKLY 1843
Score = 142 (55.0 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 52/158 (32%), Positives = 76/158 (48%)
Query: 345 VMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GA 400
V++E+ + K +PLV V + + LKPHQ GV F+++ C+ + G
Sbjct: 1534 VLDEDEETK-----EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVKKTKKSPGSGC 1586
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTR 459
ILA MGLGKTLQ ++ + T+L L+V P + NW +EF+KW GL
Sbjct: 1587 ILAHCMGLGKTLQVVSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLKD 1643
Query: 460 MCPYHVNQ----KNKAE-DYVYSRVSP---VLIISYEM 489
V++ K E Y+ R V+II YEM
Sbjct: 1644 DEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIGYEM 1681
Score = 61 (26.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 196 LIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ----KNKAE-DYVYSRVSP---VLIIS 246
L+V P + NW +EF+KW GL V++ K E Y+ R V+II
Sbjct: 1619 LVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIG 1678
Query: 247 YEM 249
YEM
Sbjct: 1679 YEM 1681
Score = 37 (18.1 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 240
+IV P + + D+FK +R N K + ED ++ VS
Sbjct: 125 VIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLKKRGEDGLHGIVS 169
Score = 37 (18.1 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 436 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480
+IV P + + D+FK +R N K + ED ++ VS
Sbjct: 125 VIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLKKRGEDGLHGIVS 169
>RGD|1561537 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6-like 2" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 PROSITE:PS00690
PROSITE:PS51194 RGD:1561537 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 IPI:IPI00194226
Ensembl:ENSRNOT00000026011 UCSC:RGD:1561537 ArrayExpress:D4AE16
Uniprot:D4AE16
Length = 466
Score = 297 (109.6 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 66/213 (30%), Positives = 116/213 (54%)
Query: 433 RKV-LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLI 491
RK+ LIV P S+ NW DE W G R+ H ++K+ + R + + +YE L
Sbjct: 80 RKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHGSKKDNELTRLKQRKCEIALTTYETLR 138
Query: 492 RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLN 551
+ + E+ +I DE HR++N +++ E+M + + RI L+GT LQN+++E + +
Sbjct: 139 LCLEELNSLEWSAIIVDEAHRIRNPNARVTEVMKAVKCKVRIGLTGTILQNNMKELWCVM 198
Query: 552 DFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDV 611
D+A PG+LGS F+K F +P+ + +T+ + + G +LAK+ +G+ LRRT +
Sbjct: 199 DWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGYFLRRTKTL 258
Query: 612 QASLLNSKRETLLVCRATPLQQSLYLRCVEYWD 644
L K + ++ T Q+++Y +E D
Sbjct: 259 IKGQLPKKEDRMVYSSLTDFQKAVYQTVLETED 291
Score = 39 (18.8 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 653 LSVTHALRKICNHPGLVQ 670
LS L+K+ NH L+Q
Sbjct: 329 LSYLTVLQKVANHVALLQ 346
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 309 (113.8 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 100/315 (31%), Positives = 149/315 (47%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ LK +Q QG+ ++ L + +L G ILADEMGLGKT+Q IALI L+
Sbjct: 725 INGTLKHYQLQGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNG 779
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSRVSPVLIISY 487
P LI+ P S SNW EF KW Y + + S VL+ +Y
Sbjct: 780 PY----LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY 835
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQE 546
E +I+ + + +I DEGHR+KN KL +++ T +RILL+GTPLQN L E
Sbjct: 836 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 895
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + S F + F P + ++++ +R +L K F+LR
Sbjct: 896 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR--RLHKVLRPFLLR 953
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSV 655
R S L K E ++ C + LQ+ LY + + D + + ++
Sbjct: 954 RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT 1013
Query: 656 THALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1014 IMQLRKICNHPYMFQ 1028
Score = 50 (22.7 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 280 SPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGL 339
+PG S + L +K S I P ++P E LQ + + H ++++ + PG
Sbjct: 316 APGQPSPVLQLQQKQ-SRIS--PIQKPQGLDPVEILQEREYRLQARIAHRIQELESLPGS 372
Query: 340 VQQPDV 345
+ PD+
Sbjct: 373 LP-PDL 377
Score = 42 (19.8 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 14 NEAYLDQEEQFDSTLSKENHNYVYPEPGGTEVSE 47
+E+ ++E++ + + +E + +P EVSE
Sbjct: 643 SESDYEEEDEEEESSRQETEEKILLDPNSEEVSE 676
Score = 42 (19.8 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 18/87 (20%), Positives = 33/87 (37%)
Query: 275 PPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKIC 334
PPS + P + G P++ + P ++ E + C + ++R
Sbjct: 50 PPSVSHPLSTMGSADFPQEGMHQLHK-PMDGIHDKGIVEDVHCGSMKGT-----SMRP-- 101
Query: 335 NHPGLVQQPDVMEEEGQWKHNPSGKPL 361
HPG+ M++ Q +P PL
Sbjct: 102 PHPGMGPPQSPMDQHSQGYMSPHPSPL 128
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 305 (112.4 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 100/307 (32%), Positives = 155/307 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 195 LRDYQIRGLNWLIS----LYENGVNG-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 247
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYEM 489
VL+ P S NW +EFK+W+ R+ + V K+ ++ + P V + SYEM
Sbjct: 248 MVLV--PKSTLYNWMNEFKRWVPSLRVICF-VGDKDARAAFIRDEMMPGEWDVCVTSYEM 304
Query: 490 LIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFY 549
+I+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 305 VIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWA 364
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT- 608
L +F P V S +F F+ + N QK + L + + K F+LRR
Sbjct: 365 LLNFLLPDVFNSADDFDSWFD-------TKNCLGDQKLVERLHA--VLKP---FLLRRIK 412
Query: 609 SDVQASLLNSKRETLLVCRATPLQQS-----LYLRCVEYWDARASRDSH--LSVTHALRK 661
+DV+ SL K+E + + +Q+ + ++ ++ ++ D L++ LRK
Sbjct: 413 TDVEKSL-PPKKEIKVYLGLSKMQREWWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRK 471
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 472 CCNHPYL 478
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 309 (113.8 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 100/315 (31%), Positives = 149/315 (47%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ LK +Q QG+ ++ L + +L G ILADEMGLGKT+Q IALI L+
Sbjct: 727 INGTLKHYQLQGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNG 781
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSRVSPVLIISY 487
P LI+ P S SNW EF KW Y + + S VL+ +Y
Sbjct: 782 PY----LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY 837
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQE 546
E +I+ + + +I DEGHR+KN KL +++ T +RILL+GTPLQN L E
Sbjct: 838 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 897
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + S F + F P + ++++ +R +L K F+LR
Sbjct: 898 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR--RLHKVLRPFLLR 955
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSV 655
R S L K E ++ C + LQ+ LY + + D + + ++
Sbjct: 956 RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT 1015
Query: 656 THALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1016 IMQLRKICNHPYMFQ 1030
Score = 50 (22.7 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 280 SPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGL 339
+PG S + L +K S I P ++P E LQ + + H ++++ + PG
Sbjct: 318 APGQPSPVLQLQQKQ-SRIS--PIQKPQGLDPVEILQEREYRLQARIAHRIQELESLPGS 374
Query: 340 VQQPDV 345
+ PD+
Sbjct: 375 LP-PDL 379
Score = 44 (20.5 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 20/89 (22%), Positives = 35/89 (39%)
Query: 275 PPSGNSPGNDSGIPSLPRKSDSGIGSL--PCKRPLEESTAETLQCNQINSHLSVTHALRK 332
PPS + P + G P++ G+ L P ++ E + C + ++R
Sbjct: 50 PPSVSHPMSTMGSADFPQE---GLHQLHKPMDGIHDKGIVEDVHCGSMKGT-----SMRP 101
Query: 333 ICNHPGLVQQPDVMEEEGQWKHNPSGKPL 361
HPG+ M++ Q +P PL
Sbjct: 102 --PHPGMGPPQSPMDQHSQGYMSPHPSPL 128
Score = 42 (19.8 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 14 NEAYLDQEEQFDSTLSKENHNYVYPEPGGTEVSE 47
+E+ ++E++ + + +E + +P EVSE
Sbjct: 645 SESDYEEEDEEEESSRQETEEKILLDPNSEEVSE 678
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 304 (112.1 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 102/313 (32%), Positives = 151/313 (48%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLK +Q +G+ +L L + +L G ILADEMGLGKT+Q IALI L+ P
Sbjct: 86 VLKQYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPF- 139
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSP--VLIISYEML 490
LI+ P S SNW EF KW Y + + R VL+ +YE +
Sbjct: 140 ---LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI 196
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQEFFY 549
I+ + + +I DEGHR+KN KL +++ T +R+LL+GTPLQN L E +
Sbjct: 197 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 256
Query: 550 LNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS 609
L +F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 257 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR--RLHKVLRPFLLRRLK 314
Query: 610 -DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSVTH 657
+V+A L K E ++ C + LQ+ LY + V D + + ++
Sbjct: 315 KEVEAQL-PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIM 373
Query: 658 ALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 374 QLRKICNHPYMFQ 386
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 304 (112.1 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 101/307 (32%), Positives = 152/307 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G++++ L + G ILADEMGLGKTLQ IAL+ L +P
Sbjct: 143 LRDYQIRGLNWMIS----LYENGING-ILADEMGLGKTLQTIALLGYLKHYR--NIPGPH 195
Query: 434 KVLIVTPSSLTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW +EFK+W+ L +C + K++ ++ + P V + SYE
Sbjct: 196 MVLV--PKSTLHNWMNEFKRWVPTLKAVCL--IGNKDERAAFIRDVMMPGEWDVCVTSYE 251
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
M+IR + L+ DE HR+KN KSKL E+ R+LL+GTPLQN+L E +
Sbjct: 252 MVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELW 311
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ N QK + L + R F+LRR
Sbjct: 312 SLLNFLLPDVFNSASDFDSWFDT--------NCLGDQKLVERLHA---VLRP--FLLRRI 358
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--LSVTHALRK 661
++V+ SL K+E + + +Q+ Y R ++ ++ D L++ LRK
Sbjct: 359 KAEVEKSL-PPKKEVKIYLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRK 417
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 418 CCNHPYL 424
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 312 (114.9 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 85/291 (29%), Positives = 142/291 (48%)
Query: 370 LSRVLKPHQRQGVSFLYERV-----CDLAS-LDLEGAI-----LADEMGLGKTLQCIA-- 416
++R L+ +QR+G FLY C L + L + LA + T + I
Sbjct: 57 INRYLRDYQREGAQFLYAHFIQGKGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENN 116
Query: 417 ---LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473
+ +++ P + LIV P S+ NW DE W G R+ H N+K+
Sbjct: 117 MPEFLLRSMKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTW-GYFRVTILHGNKKDNELV 175
Query: 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRI 533
V R + + +YE L + E+ +I DE H++KN K+++ E+M L RI
Sbjct: 176 RVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHKIKNPKARVTEVMKALKCNVRI 235
Query: 534 LLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593
L+GT LQN+++E + + D+A PG+LGS F+K F +P+ + +T+ + + G
Sbjct: 236 GLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAM 295
Query: 594 SQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWD 644
+LAK +G+ LRRT + L K + ++ C T Q+++Y +E D
Sbjct: 296 QRLAKMMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETKD 346
Score = 39 (18.8 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 652 HLSVTHALRKICNHPGLVQQPDMMEEE 678
+ S L+K+ NH L+Q +++
Sbjct: 383 YFSYLAVLQKVANHVALLQSASTSKQQ 409
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 303 (111.7 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 96/314 (30%), Positives = 160/314 (50%)
Query: 367 DGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL--IWTLLRQ 424
DGF + L+P+Q++G+++L L+SL L G+ LAD+MGLGKT+Q +AL + ++ R
Sbjct: 527 DGFTA-TLRPYQQRGLAWL----AFLSSLGL-GSCLADDMGLGKTVQLLALETLESVQRH 580
Query: 425 GPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE---DYVYSRVSP 481
G + L++ P SL NW E ++ R+ +H + E D++ R
Sbjct: 581 QDRG---VGPTLLLCPMSLVGNWPQEAARFAPNLRVYAHHGGARLHGEALRDHL-ERTD- 635
Query: 482 VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQ 541
+++ +Y R + + E++ ++ DE +KN S+ + + L R+ L+GTP++
Sbjct: 636 LVVSTYTTATRDIDELAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPME 695
Query: 542 NDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTA 601
N L E + + DF NPG+LGS FR + PI R ++ A++ LR+S T
Sbjct: 696 NRLAELWSIMDFLNPGLLGSSERFRTRYAIPI--ERHGHTEPAER----LRAS-----TR 744
Query: 602 GFILRRTSDVQASL--LNSKRETLLVCRATPLQQSLY-------LRCVEYWDARASRDSH 652
+ILRR A + L K E C+ T Q SLY + +E + R +
Sbjct: 745 PYILRRLKTDPAIIDDLPEKIEIKQYCQLTTEQASLYQAVVADMMEKIENTEGIERRGNV 804
Query: 653 LSVTHALRKICNHP 666
L+ L+++CNHP
Sbjct: 805 LAAMAKLKQVCNHP 818
>MGI|MGI:103067 [details] [associations]
symbol:Atrx "alpha thalassemia/mental retardation syndrome
X-linked homolog (human)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IDA] [GO:0000792 "heterochromatin" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070087 "chromo shadow domain
binding" evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 MGI:MGI:103067 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10779
GeneTree:ENSGT00550000074619 CTD:546 HOVERGEN:HBG000104
OrthoDB:EOG4PVNXQ InterPro:IPR025766 PROSITE:PS51533 EMBL:AF026032
EMBL:AL671893 EMBL:AL670660 EMBL:X99643 IPI:IPI00322707
RefSeq:NP_033556.2 UniGene:Mm.10141 ProteinModelPortal:Q61687
SMR:Q61687 IntAct:Q61687 STRING:Q61687 PhosphoSite:Q61687
PaxDb:Q61687 PRIDE:Q61687 Ensembl:ENSMUST00000113573 GeneID:22589
KEGG:mmu:22589 HOGENOM:HOG000231302 InParanoid:A2ADH4
NextBio:302925 Bgee:Q61687 Genevestigator:Q61687
GermOnline:ENSMUSG00000031229 GO:GO:0000792 GO:GO:0000228
Uniprot:Q61687
Length = 2476
Score = 230 (86.0 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 51/142 (35%), Positives = 78/142 (54%)
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ +VD D ++CDEGH LKN S + + M + R+RI+L+GTPLQN+L E+ + +F
Sbjct: 1691 KALVDPGPDFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFI 1750
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
+LGS++EFR F PI + +ST + + R+ L + AG + R+
Sbjct: 1751 KENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTK 1810
Query: 615 LLNSKRETLLVCRATPLQQSLY 636
L K E +L R T +Q LY
Sbjct: 1811 FLPPKHEYVLAVRMTAIQCKLY 1832
Score = 143 (55.4 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 49/144 (34%), Positives = 69/144 (47%)
Query: 359 KPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GAILADEMGLGKTLQC 414
+PLV V + + LKPHQ GV F+++ C+ + G ILA MGLGKTLQ
Sbjct: 1532 EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVEKTKKSPGSGCILAHCMGLGKTLQV 1589
Query: 415 IALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ----KN 469
++ + T+L L+V P + NW +EF+KW GL V++ K
Sbjct: 1590 VSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLNDNEKLEVSELATVKR 1646
Query: 470 KAE-DYVYSRVSP---VLIISYEM 489
E Y+ R V+II YEM
Sbjct: 1647 PQERSYMLQRWQEDGGVMIIGYEM 1670
Score = 63 (27.2 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 196 LIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ----KNKAE-DYVYSRVSP---VLIIS 246
L+V P + NW +EF+KW GL V++ K E Y+ R V+II
Sbjct: 1608 LVVCPLNTALNWMNEFEKWQEGLNDNEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIG 1667
Query: 247 YEM 249
YEM
Sbjct: 1668 YEM 1670
Score = 42 (19.8 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 258 VDTEFDLLICDEKSLLKPPSGNSPGN 283
VD+E +CD+ S P +S N
Sbjct: 299 VDSEKTSKVCDQTSKFSPKKSSSSCN 324
Score = 42 (19.8 bits), Expect = 7.6e-13, Sum P(3) = 7.6e-13
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 47 EAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVLEISGTMAILKDTLGKVIDSKVKIL 106
E N N V+ + V + + + W++DG + I G G+ + S+ K+
Sbjct: 1628 EGLNDNEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSR-KLK 1686
Query: 107 D 107
D
Sbjct: 1687 D 1687
Score = 41 (19.5 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 4 KDLTNVLDILNEAYLDQEEQFDSTL 28
K +VLD + +A+L EE +S +
Sbjct: 394 KSFKSVLDDIKKAHLALEEDLNSEI 418
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 312 (114.9 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 85/291 (29%), Positives = 142/291 (48%)
Query: 370 LSRVLKPHQRQGVSFLYERV-----CDLAS-LDLEGAI-----LADEMGLGKTLQCIA-- 416
++R L+ +QR+G FLY C L + L + LA + T + I
Sbjct: 119 INRYLRDYQREGAQFLYAHFIQGKGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENN 178
Query: 417 ---LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED 473
+ +++ P + LIV P S+ NW DE W G R+ H N+K+
Sbjct: 179 MPEFLLRSMKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTW-GYFRVTILHGNKKDNELV 237
Query: 474 YVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRI 533
V R + + +YE L + E+ +I DE H++KN K+++ E+M L RI
Sbjct: 238 RVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHKIKNPKARVTEVMKALKCNVRI 297
Query: 534 LLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593
L+GT LQN+++E + + D+A PG+LGS F+K F +P+ + +T+ + + G
Sbjct: 298 GLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAM 357
Query: 594 SQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWD 644
+LAK +G+ LRRT + L K + ++ C T Q+++Y +E D
Sbjct: 358 QRLAKMMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETKD 408
Score = 39 (18.8 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 652 HLSVTHALRKICNHPGLVQQPDMMEEE 678
+ S L+K+ NH L+Q +++
Sbjct: 445 YFSYLAVLQKVANHVALLQSASTSKQQ 471
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 309 (113.8 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
Identities = 100/315 (31%), Positives = 149/315 (47%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ LK +Q QG+ ++ L + +L G ILADEMGLGKT+Q IALI L+
Sbjct: 704 INGTLKHYQLQGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNG 758
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSRVSPVLIISY 487
P LI+ P S SNW EF KW Y + + S VL+ +Y
Sbjct: 759 PY----LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY 814
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQE 546
E +I+ + + +I DEGHR+KN KL +++ T +RILL+GTPLQN L E
Sbjct: 815 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 874
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + S F + F P + ++++ +R +L K F+LR
Sbjct: 875 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR--RLHKVLRPFLLR 932
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSV 655
R S L K E ++ C + LQ+ LY + + D + + ++
Sbjct: 933 RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT 992
Query: 656 THALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 993 IMQLRKICNHPYMFQ 1007
Score = 56 (24.8 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 280 SPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGL 339
+PG S I L +K S I P ++P E LQ + + H ++++ N PG
Sbjct: 294 APGQPSPILQLQQKQ-SRIS--PVQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGS 350
Query: 340 VQQPDV 345
+ PD+
Sbjct: 351 LP-PDL 355
Score = 45 (20.9 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 19/87 (21%), Positives = 32/87 (36%)
Query: 275 PPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKIC 334
PPS + P G P++ + P ++ E + C + A+R
Sbjct: 50 PPSVSHPMPTMGSADFPQEGMHQMHK-PMDGMHDKGVVEDIHCGSMKGT-----AMRP-- 101
Query: 335 NHPGLVQQPDVMEEEGQWKHNPSGKPL 361
HPG+ M++ Q +P PL
Sbjct: 102 PHPGMGPPQSPMDQHSQGYMSPHPSPL 128
Score = 40 (19.1 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 17 YLDQEEQFDSTLSKENHNYVYPEPGGTEVSE 47
Y +++E+ +S+ +E + +P EVSE
Sbjct: 626 YEEEDEEEESS-RQETEEKILLDPNSEEVSE 655
Score = 40 (19.1 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 276 PSGNSPGNDSGIPSLPRK 293
PSG PG + G PS P+K
Sbjct: 245 PSG--PGPELGGPSPPQK 260
Score = 37 (18.1 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 349 EGQWKHNPSGK 359
EG WK N S K
Sbjct: 466 EGTWKSNLSSK 476
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 291 (107.5 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 100/327 (30%), Positives = 151/327 (46%)
Query: 362 VDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTL 421
VD ++ LK +Q QG+ ++ L + +L G ILADEMGLGKT+Q I LI L
Sbjct: 714 VDKQSTFLINGTLKQYQIQGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTIGLITYL 768
Query: 422 LR----QGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH--VNQKNKAEDYV 475
+ GPY LI+ P S SNW E KW Y + + +
Sbjct: 769 MELKRLNGPY--------LIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSLVPQL 820
Query: 476 YSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRIL 534
S VLI +YE +I+ + + +I DEGHR+KN KL +++ T +R+L
Sbjct: 821 RSGKFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLL 880
Query: 535 LSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSS 594
L+GTPLQN L E + L +F P + S F + F P + ++++ +R
Sbjct: 881 LTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR-- 938
Query: 595 QLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDA----- 645
+L K F+LRR S L K E ++ C + +Q+ LY + D
Sbjct: 939 RLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDK 998
Query: 646 --RASRDSHLSVTHALRKICNHPGLVQ 670
+ + ++ L+KICNHP + Q
Sbjct: 999 KGKGGAKTLMNTIMQLKKICNHPYMFQ 1025
Score = 66 (28.3 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 274 KPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKI 333
+PP+G PG S I L +K + I P ++P E LQ + + H ++++
Sbjct: 310 QPPAG--PGQPSLIIQLQQKQNRVI---PIQKPQGLDPVELLQEREYRLQARIAHRIQEL 364
Query: 334 CNHPGLVQQPDV 345
N PG + PD+
Sbjct: 365 ENLPGSLP-PDL 375
Score = 44 (20.5 bits), Expect = 6.7e-21, Sum P(2) = 6.7e-21
Identities = 15/58 (25%), Positives = 21/58 (36%)
Query: 275 PPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRK 332
P +G SPG G P S + S+ P S T+Q + H + K
Sbjct: 18 PGAGLSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVPHTMQGQGAGEYSQEMHPMHK 75
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 311 (114.5 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 93/316 (29%), Positives = 161/316 (50%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWT--LLRQGPYGM-- 429
L+P+Q++GV++L L +L G IL D+MGLGKTLQ I ++ + +R +
Sbjct: 1318 LRPYQQEGVNWL----AFLNRYNLHG-ILCDDMGLGKTLQTICIVASDHHMRAEDFAKTQ 1372
Query: 430 -PVIRKV--LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN---QKNKAEDYVYSRVSPVL 483
P RKV LI+ P SL+ +W E K++ C +V +++K + + + ++
Sbjct: 1373 RPESRKVPSLIICPPSLSGHWQQEVKQYAPFLN-CVAYVGPPAERSKLQGSLAD--ADIV 1429
Query: 484 IISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQND 543
+ SY++ + ++ + DEGH +KN K+K+ + +N R++LSGTP+QN+
Sbjct: 1430 VTSYDICRNDNDVLRPISWNYCVLDEGHLIKNPKAKVTMAVKRINSNHRLILSGTPIQNN 1489
Query: 544 LQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGF 603
+ E + L DF PG LG+ + F F +PI SR S++ Q++ G L L K+ F
Sbjct: 1490 VLELWSLFDFLMPGFLGTEKVFLDRFAKPIATSRFSKSSKEQEA-GALAIEALHKQVLPF 1548
Query: 604 ILRRTSDVQASLLNSKRETLLVCRATPLQQSLY-------LRCVEYW---DARASRDSHL 653
+LRR + + L K C + LQ+ L+ + ++ +A ++
Sbjct: 1549 LLRRLKEEVLNDLPPKIIQNYYCDPSELQKKLFEDFTKKEQKALQEKMGSSEKADKEHIF 1608
Query: 654 SVTHALRKICNHPGLV 669
+R++CN P LV
Sbjct: 1609 QALQYMRRLCNSPALV 1624
Score = 46 (21.3 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 27/136 (19%), Positives = 54/136 (39%)
Query: 273 LKPPSGNSPGNDSGIP-----SLPRKSDSGIGSLPCKRPLEESTAETLQCNQI-NSHLSV 326
L PS + G +SG+ L RKS I L + + Q + N +S
Sbjct: 207 LPSPSEPANGEESGLSRRQLNQLKRKSKH-IARLGANKVRVVDLSSRRQSENVTNPSIST 265
Query: 327 THALR-KICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSR-VLKP---HQRQG 381
H ++ + + +PD E H+ K + + + +++P +
Sbjct: 266 PHPVKTEYGDGQNGDAKPDYFSLERPADHDDESKIVSEFKGTTLPDKSIIQPDLAEDTET 325
Query: 382 VSFLYERVCDLASLDL 397
+++ YER+C+ +D+
Sbjct: 326 IAWPYERMCEFLKVDI 341
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 301 (111.0 bits), Expect = 4.5e-23, P = 4.5e-23
Identities = 100/307 (32%), Positives = 152/307 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ I+L+ + +P
Sbjct: 163 LRDYQVRGLNWLIS----LYENGING-ILADEMGLGKTLQTISLLGYMKHYR--NIPGPH 215
Query: 434 KVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW +EFK+W+ L +C + + + ++ + P V + SYE
Sbjct: 216 MVLV--PKSTLYNWMNEFKRWVPSLKAVCL--IGDREERTAFIRDTLLPGEWDVCVTSYE 271
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
MLI + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 272 MLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 331
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ N+ L E + L F+LRR
Sbjct: 332 ALLNFLLPDVFNSSEDFDAWFDT--------NNCLGDTKLVERLHTVLRP----FLLRRI 379
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSH--LSVTHALRK 661
+DV+ SLL K+E + + +Q+ Y ++ ++ ++ D L+V LRK
Sbjct: 380 KADVEKSLL-PKKEIKIYVGLSKMQREWYTKILMKDIDILNSAGKMDKMRLLNVLMQLRK 438
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 439 CCNHPYL 445
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 302 (111.4 bits), Expect = 4.5e-23, P = 4.5e-23
Identities = 110/322 (34%), Positives = 160/322 (49%)
Query: 371 SRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR-QGPYGM 429
S ++ +Q G+++L + L + G ILADEMGLGKTLQ I+L+ L +G G
Sbjct: 273 SGTMRDYQVYGLNWLIQ----LYERGING-ILADEMGLGKTLQTISLLGYLSEYKGIRG- 326
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS----PVLII 485
P LI+ P S S W EF +W R+ +H K + ED +++ V I
Sbjct: 327 PH----LIIAPKSTLSGWAKEFTRWCPFLRVVRFH-GSKEEREDIKKNQLIFKKFDVCIT 381
Query: 486 SYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
+YE+ IR T + +I DE HR+KN S L + + N + R+L++GTPLQN+L
Sbjct: 382 TYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLH 441
Query: 546 EFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFIL 605
E + L +F P V S +F K F+ N+TE Q+ + + +L K F+L
Sbjct: 442 ELWSLLNFLLPDVFSSSDDFDKWFD-------LANNTENQQEVID----KLHKVLRPFLL 490
Query: 606 RRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCVEY-WDA-------RASRDSHLSVT 656
RR ++V+ SL K L V +T +Q+ Y R + DA R L++
Sbjct: 491 RRIKTEVEKSLPPKKEIKLFVGLST-MQKEWYKRLLSKDLDAVVVGAKGNTGRVRLLNIC 549
Query: 657 HALRKICNHPGLVQQPDMMEEE 678
LRK CNHP L D EEE
Sbjct: 550 MQLRKACNHPYLF---DGAEEE 568
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 279 (103.3 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 102/394 (25%), Positives = 190/394 (48%)
Query: 208 NDEFKKWLGLTRMCPYHVNQKNKAEDYVY---SRVSPVLIISYEMLIRAYQTIVDTEFDL 264
NDE + T Y +K ED SR++ +L I ++ ++ D
Sbjct: 664 NDEVADFA--TTTFEYSAEEKKLIEDLNQESDSRMNSLLDSDSVSSISDSESSEESSSDT 721
Query: 265 LICDEKSLLKPPSGNSPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHL 324
+ D+ ++ +PP + G+++G+ SL G++ + S + + N+ + +
Sbjct: 722 EM-DQSTVSEPPRSSETGSNTGLASLFTN-----GTIVSDEEDDVSISSNFE-NESDESM 774
Query: 325 SVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSF 384
+ + ++ N G + + +E+ +G + DV + L L+P+Q+QG+++
Sbjct: 775 NSSDRELEV-NGNGKIDKIASTDEDDSNVEIVNGSKVKDVPIPSLLRGTLRPYQKQGLNW 833
Query: 385 LYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLT 444
L L + + G ILADEMGLGKT+Q I+L+ L + P LI+ P+S+
Sbjct: 834 L----ASLYNNNTNG-ILADEMGLGKTIQTISLLAYLACEHHKWGPH----LIIVPTSVM 884
Query: 445 SNWNDEFKKWLGLTRMCPYHVNQKNKAEDYV-YSRVSP--VLIISYEMLIRAYQTIVDTE 501
NW EFKK+ ++ Y+ + + +A+ +++ V I SY+++++ Q+
Sbjct: 885 LNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQLVVQDQQSFKRRR 944
Query: 502 FDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDF-------- 553
+ +I DE H +KN +S + + N R+LL+GTPLQN+L E + L F
Sbjct: 945 WTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFLMPSSKVN 1004
Query: 554 -ANPGVLGSLREFRKNFEEP---ILESRSPNSTE 583
A P +L +F++ F +P ILE S +++
Sbjct: 1005 QAMPEGFANLDDFQQWFGKPVNRILEQTSAGNSD 1038
Score = 77 (32.2 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 580 NSTEAQKSLGELRSS--QLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY 636
N QK E R++ +L + ++LRR DV+ + K E ++ CR + Q+ LY
Sbjct: 1043 NERTTQKMDEETRNTVARLHQVLRPYLLRRLKKDVEKQM-PGKYEHIVYCRLSKRQRFLY 1101
Query: 637 ---LRCVEYWDARASRDSHLSVTHAL---RKICNHPGLVQ 670
+ + + AS + LS+ + L RK+CNHP L +
Sbjct: 1102 DDFMSRAKTKETLAS-GNFLSIINCLMQLRKVCNHPDLFE 1140
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 287 (106.1 bits), Expect = 6.4e-23, Sum P(3) = 6.4e-23
Identities = 93/292 (31%), Positives = 144/292 (49%)
Query: 357 SGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA 416
+G+P+ F V++ +Q +G+ +L R+ L + G ILADEMGLGKT+QCIA
Sbjct: 205 NGQPVPFQQPKIFTGGVMRWYQVEGMEWL--RM--LWENGING-ILADEMGLGKTIQCIA 259
Query: 417 LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ--KNKAEDY 474
I ++ +G G P L+ P S NW EFK++ + YH Q + K
Sbjct: 260 TIALMVERGVPG-PF----LVCGPLSTLPNWMSEFKRFTPEIPLMLYHGAQQERRKLVRK 314
Query: 475 VYSR-----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
++ R + PV+I S+E+ +R + + LI DEGHR+KN +L + N
Sbjct: 315 IHGRQGSLKIHPVVITSFEIAMRDRNALQSCFWKYLIVDEGHRIKNMNCRLIRELKRFNA 374
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
++LL+GTPLQN+L E + L +F P V L+ F F+ + + + +K
Sbjct: 375 DNKLLLTGTPLQNNLAELWSLLNFLLPDVFDDLKSFESWFDITSITETAEDIIAKEKEQN 434
Query: 590 ELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
L L + F+LRR SDV A + KRE ++ Q++ Y V
Sbjct: 435 ILH--MLHQILTPFLLRRLKSDV-ALEVPPKREVVVYAPLAKKQETFYTAIV 483
Score = 55 (24.4 bits), Expect = 6.4e-23, Sum P(3) = 6.4e-23
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 659 LRKICNHPGLVQQP 672
LRK CNHP L++ P
Sbjct: 567 LRKCCNHPYLIEYP 580
Score = 47 (21.6 bits), Expect = 6.4e-23, Sum P(3) = 6.4e-23
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 69 SAKKHKSWEQDGVLEISGTMAILKDTLGKVIDSKVKILDEIKPG 112
SA K K DG IS M+ ++ L SKV+ DE G
Sbjct: 123 SATKKKRGRDDGTYNISEIMS-KEEILSVAKKSKVENQDESSAG 165
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 241 (89.9 bits), Expect = 8.7e-23, Sum P(2) = 8.7e-23
Identities = 70/202 (34%), Positives = 104/202 (51%)
Query: 482 VLIISYEMLIRAYQT-IVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPL 540
VL+ +Y L R Y I+ E+ ++ DEGH+++N S + + RI+LSGTP+
Sbjct: 405 VLVTTYVGL-RIYSKHILPREWGYVVLDEGHKIRNPDSDISLTCKKIKTVNRIILSGTPI 463
Query: 541 QNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRT 600
QN+L E + L DF PG LG+L F++ F PI NS Q + L
Sbjct: 464 QNNLIELWSLFDFVFPGRLGTLPVFQQEFSIPINIGGYANSNNLQVKTAYKCAVVLRDLI 523
Query: 601 AGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARA---SRDSHLSVT 656
+ ++LRR SDV A L K E +L + T +QQ LY ++ D + + + L
Sbjct: 524 SPYMLRRLKSDV-AQDLPKKNEMVLFVKLTKIQQELYESFLQSEDLESILKGKRNVLMGV 582
Query: 657 HALRKICNHPGLVQQPDMMEEE 678
LRKICNHP LV + +M+ +
Sbjct: 583 DILRKICNHPDLVYRDTLMKRK 604
Score = 110 (43.8 bits), Expect = 8.7e-23, Sum P(2) = 8.7e-23
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKW 454
G I+ DEMGLGKT+Q I+ + L G PV L+V P+++ + W +EF +W
Sbjct: 291 GGIIGDEMGLGKTIQIISFLAGLHYSGLLDKPV----LVVVPATVLNQWVNEFHRW 342
Score = 57 (25.1 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 195 VLIVTPSSLTSNWNDEFKKW 214
VL+V P+++ + W +EF +W
Sbjct: 323 VLVVVPATVLNQWVNEFHRW 342
>UNIPROTKB|P46100 [details] [associations]
symbol:ATRX "Transcriptional regulator ATRX" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=TAS] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0005720 "nuclear
heterochromatin" evidence=TAS] [GO:0006306 "DNA methylation"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070087 "chromo shadow domain binding" evidence=IPI]
[GO:0032508 "DNA duplex unwinding" evidence=TAS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005720 GO:GO:0030900 GO:GO:0003682
GO:GO:0006310 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0006306 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
DrugBank:DB00144 EMBL:CH471104 KO:K10779 EMBL:U72937 EMBL:U72938
EMBL:U72935 EMBL:U72904 EMBL:U72905 EMBL:U72907 EMBL:U72908
EMBL:U72909 EMBL:U72910 EMBL:U72911 EMBL:U72912 EMBL:U72913
EMBL:U72914 EMBL:U72915 EMBL:U72916 EMBL:U72917 EMBL:U72918
EMBL:U72919 EMBL:U72920 EMBL:U72921 EMBL:U72922 EMBL:U72923
EMBL:U72924 EMBL:U72925 EMBL:U72926 EMBL:U72927 EMBL:U72928
EMBL:U72929 EMBL:U72930 EMBL:U72931 EMBL:U72932 EMBL:U72933
EMBL:U72934 EMBL:U72936 EMBL:U75653 EMBL:U97103 EMBL:AF000157
EMBL:AF000158 EMBL:AF000159 EMBL:AF000160 EMBL:U97080 EMBL:U97081
EMBL:U97082 EMBL:U97083 EMBL:U97084 EMBL:U97085 EMBL:U97086
EMBL:U97087 EMBL:U97088 EMBL:U97089 EMBL:U97090 EMBL:U97091
EMBL:U97092 EMBL:U97093 EMBL:U97094 EMBL:U97095 EMBL:U97096
EMBL:U97097 EMBL:U97098 EMBL:U97099 EMBL:U97100 EMBL:U97101
EMBL:U97102 EMBL:AB102641 EMBL:AB101681 EMBL:AB101682 EMBL:AB101683
EMBL:AB101685 EMBL:AB101687 EMBL:AB101689 EMBL:AB101691
EMBL:AB101693 EMBL:AB101695 EMBL:AB101700 EMBL:AB101699
EMBL:AB101698 EMBL:AB101697 EMBL:AB101696 EMBL:AB101694
EMBL:AB101692 EMBL:AB101690 EMBL:AB101688 EMBL:AB101686
EMBL:AB101684 EMBL:AB208928 EMBL:AB209545 EMBL:AL121874
EMBL:AL109753 EMBL:Z84487 EMBL:U09820 EMBL:L34363 EMBL:X83753
IPI:IPI00220109 IPI:IPI00297633 IPI:IPI00845355 IPI:IPI00883721
IPI:IPI00938010 IPI:IPI00940810 PIR:I38614 PIR:I54367
RefSeq:NP_000480.2 RefSeq:NP_612114.1 UniGene:Hs.533526
UniGene:Hs.653797 PDB:2JM1 PDB:2LBM PDB:2LD1 PDB:3QL9 PDB:3QLA
PDB:3QLC PDB:3QLN PDBsum:2JM1 PDBsum:2LBM PDBsum:2LD1 PDBsum:3QL9
PDBsum:3QLA PDBsum:3QLC PDBsum:3QLN ProteinModelPortal:P46100
SMR:P46100 DIP:DIP-31532N IntAct:P46100 MINT:MINT-1186201
STRING:P46100 PhosphoSite:P46100 DMDM:311033500 PaxDb:P46100
PRIDE:P46100 DNASU:546 Ensembl:ENST00000373344
Ensembl:ENST00000395603 GeneID:546 KEGG:hsa:546 UCSC:uc004eco.4
UCSC:uc004ecq.4 UCSC:uc004ecr.2 CTD:546 GeneCards:GC0XM076760
H-InvDB:HIX0176765 HGNC:HGNC:886 HPA:CAB009372 HPA:HPA001906
MIM:300032 MIM:300448 MIM:301040 MIM:309580 neXtProt:NX_P46100
Orphanet:847 Orphanet:231401 Orphanet:93973 Orphanet:93971
Orphanet:93970 Orphanet:93972 Orphanet:93974 Orphanet:3423
PharmGKB:PA25179 HOVERGEN:HBG000104 InParanoid:P46100 OMA:GEGKWFR
OrthoDB:EOG4PVNXQ PhylomeDB:P46100 EvolutionaryTrace:P46100
GenomeRNAi:546 NextBio:2259 ArrayExpress:P46100 Bgee:P46100
CleanEx:HS_RAD54L Genevestigator:P46100 GermOnline:ENSG00000085224
InterPro:IPR025766 PROSITE:PS51533 Uniprot:P46100
Length = 2492
Score = 230 (86.0 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 51/142 (35%), Positives = 78/142 (54%)
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ +VD D ++CDEGH LKN S + + M + R+RI+L+GTPLQN+L E+ + +F
Sbjct: 1706 KALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFI 1765
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
+LGS++EFR F PI + +ST + + R+ L + AG + R+
Sbjct: 1766 KENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTK 1825
Query: 615 LLNSKRETLLVCRATPLQQSLY 636
L K E +L R T +Q LY
Sbjct: 1826 FLPPKHEYVLAVRMTSIQCKLY 1847
Score = 142 (55.0 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 52/158 (32%), Positives = 76/158 (48%)
Query: 345 VMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GA 400
V++E+ + K +PLV V + + LKPHQ GV F+++ C+ + G
Sbjct: 1538 VLDEDEETK-----EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVKKTKKSPGSGC 1590
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTR 459
ILA MGLGKTLQ ++ + T+L L+V P + NW +EF+KW GL
Sbjct: 1591 ILAHCMGLGKTLQVVSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLKD 1647
Query: 460 MCPYHVNQ----KNKAE-DYVYSRVSP---VLIISYEM 489
V++ K E Y+ R V+II YEM
Sbjct: 1648 DEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIGYEM 1685
Score = 61 (26.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 196 LIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ----KNKAE-DYVYSRVSP---VLIIS 246
L+V P + NW +EF+KW GL V++ K E Y+ R V+II
Sbjct: 1623 LVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIG 1682
Query: 247 YEM 249
YEM
Sbjct: 1683 YEM 1685
Score = 37 (18.1 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 240
+IV P + + D+FK +R N K + ED ++ VS
Sbjct: 126 VIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLKKRGEDGLHGIVS 170
Score = 37 (18.1 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 436 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480
+IV P + + D+FK +R N K + ED ++ VS
Sbjct: 126 VIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLKKRGEDGLHGIVS 170
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 308 (113.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 102/307 (33%), Positives = 152/307 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +G+++L L + G ILADEMGLGKTLQ I+L+ + +P
Sbjct: 180 LRDYQVRGLNWLIS----LYENGING-ILADEMGLGKTLQTISLLGYMKHYR--NIPGPH 232
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDYVYSRVSP----VLIISYE 488
VL+ P S NW EFK+W+ R +C + K + +V + P V + SYE
Sbjct: 233 MVLV--PKSTLHNWMSEFKRWVPTLRSVCL--IGDKEQRAAFVRDVLLPGEWDVCVTSYE 288
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
MLI+ + L+ DE HR+KN KSKL E++ R+LL+GTPLQN+L E +
Sbjct: 289 MLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 348
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
L +F P V S +F F+ + N QK + L + R F+LRR
Sbjct: 349 SLLNFLLPDVFNSADDFDSWFD-------TNNCLGDQKLVERLH---MVLRP--FLLRRI 396
Query: 609 -SDVQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--LSVTHALRK 661
+DV+ SL K+E + + +Q+ Y R ++ ++ D L++ LRK
Sbjct: 397 KADVEKSL-PPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRK 455
Query: 662 ICNHPGL 668
CNHP L
Sbjct: 456 CCNHPYL 462
Score = 38 (18.4 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 19 DQEEQFDSTLSKENHNYVYPEPGGTEVSEAQNSN---HATSVTRIFNVVYGKPSAKK 72
+ EE FD+ + P+P E + +N + T +F + +P+A+K
Sbjct: 57 EMEEVFDNASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELF-AHFIQPAAQK 112
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 299 (110.3 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 110/392 (28%), Positives = 183/392 (46%)
Query: 304 KRPLEESTAETLQCNQINSHLSVTHALRKICNHPGLVQQPDVMEEEGQWKHNPSGKPLVD 363
+R ES E +Q + H + A R+ P D+ E E ++ NP+ +
Sbjct: 778 RRLAVESAQEAVQ--KAREHSQLFDANRQ--QSPNN-SSSDMNEGEMNFQ-NPTLVNAFE 831
Query: 364 VTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR 423
V L LK +Q +G+++L +L + G ILADEMGLGKT+Q I+++ L
Sbjct: 832 VKQPKMLMCKLKEYQLKGLNWL----ANLYEQGING-ILADEMGLGKTVQSISVMAYLAE 886
Query: 424 QGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--------EDYV 475
P L++ P+S NW E +++ + PY + K++ ++
Sbjct: 887 THNIWGPF----LVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMT 942
Query: 476 YSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRI 533
Y SP V++ SY++++ Q ++ +I DE +K+ S ++ + R R+
Sbjct: 943 YDENSPFHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRL 1002
Query: 534 LLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRS 593
LL+GTP+QN +QE + L F P + S EF + F + I ES + ++T+ L E +
Sbjct: 1003 LLTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDI-ESHAQSNTQ----LNEQQL 1057
Query: 594 SQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY--LR----CVEYWDAR- 646
+L F+LRR S L K E + C T Q+ LY LR E +
Sbjct: 1058 KRLHMILKPFMLRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAI 1117
Query: 647 -ASRDSHLSVTHAL---RKICNHPGLVQQPDM 674
D+ S+ + + RK+CNHP L ++ D+
Sbjct: 1118 LGGDDTVASIMNLVMQFRKVCNHPDLFEREDV 1149
>UNIPROTKB|F1LM36 [details] [associations]
symbol:F1LM36 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 IPI:IPI00958931 Ensembl:ENSRNOT00000042751
ArrayExpress:F1LM36 Uniprot:F1LM36
Length = 2467
Score = 230 (86.0 bits), Expect = 1.4e-22, Sum P(4) = 1.4e-22
Identities = 51/142 (35%), Positives = 78/142 (54%)
Query: 495 QTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFA 554
+ +VD D ++CDEGH LKN S + + M + R+RI+L+GTPLQN+L E+ + +F
Sbjct: 1683 KALVDPGPDFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFI 1742
Query: 555 NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQAS 614
+LGS++EFR F PI + +ST + + R+ L + AG + R+
Sbjct: 1743 KENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTK 1802
Query: 615 LLNSKRETLLVCRATPLQQSLY 636
L K E +L R T +Q LY
Sbjct: 1803 FLPPKHEYVLAVRMTAIQCKLY 1824
Score = 145 (56.1 bits), Expect = 1.4e-22, Sum P(4) = 1.4e-22
Identities = 52/158 (32%), Positives = 76/158 (48%)
Query: 345 VMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE----GA 400
V++E+ + K +PLV V + + LKPHQ GV F+++ C+ + G
Sbjct: 1515 VLDEDEETK-----EPLVQVHRNMVIK--LKPHQVDGVQFMWDCCCESVKKTKKSPGSGC 1567
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL-GLTR 459
ILA MGLGKTLQ ++ + T+L L+V P + NW +EF+KW GL
Sbjct: 1568 ILAHCMGLGKTLQVVSFLHTVLLCDKLDFST---ALVVCPLNTALNWMNEFEKWQEGLND 1624
Query: 460 MCPYHVNQ----KNKAE-DYVYSRVSP---VLIISYEM 489
V++ K E Y+ R V+II YEM
Sbjct: 1625 AEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIGYEM 1662
Score = 64 (27.6 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 196 LIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQ----KNKAE-DYVYSRVSP---VLIIS 246
L+V P + NW +EF+KW GL V++ K E Y+ R V+II
Sbjct: 1600 LVVCPLNTALNWMNEFEKWQEGLNDAEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIG 1659
Query: 247 YEM 249
YEM
Sbjct: 1660 YEM 1662
Score = 42 (19.8 bits), Expect = 1.4e-22, Sum P(4) = 1.4e-22
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 258 VDTEFDLLICDEKSLLKPPSGNSPGN 283
VD+E +CD+ S P +S N
Sbjct: 299 VDSEKTSKVCDQTSKFSPKKNSSSCN 324
Score = 37 (18.1 bits), Expect = 1.4e-22, Sum P(4) = 1.4e-22
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 196 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 240
+IV P + + D+FK +R N K + ED ++ VS
Sbjct: 125 VIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLKKRGEDGLHGIVS 169
Score = 37 (18.1 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 436 LIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVS 480
+IV P + + D+FK +R N K + ED ++ VS
Sbjct: 125 VIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLKKRGEDGLHGIVS 169
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 298 (110.0 bits), Expect = 1.9e-22, P = 1.9e-22
Identities = 95/312 (30%), Positives = 153/312 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LK +Q +G+ +L L + +L G ILADEMGLGKT+Q I+L+ L+ + V+
Sbjct: 773 LKEYQIKGLEWLVS----LYNNNLNG-ILADEMGLGKTIQTISLVTYLMDR----KKVMG 823
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--EDYVYSRVSPVLIISYEMLI 491
LI+ P S NW EF+KW + Y + + + ++ + + VL+ +YE +I
Sbjct: 824 PYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQMRATKFNVLLTTYEYVI 883
Query: 492 RAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRK-RILLSGTPLQNDLQEFFYL 550
+ + ++ +I DEGHR+KN KL +++ I R+LL+GTPLQN L E + L
Sbjct: 884 KDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWAL 943
Query: 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSD 610
+F P + S F + F P + ++++ +R +L K F+LRR
Sbjct: 944 LNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIR--RLHKVLRPFLLRRLKK 1001
Query: 611 VQASLLNSKRETLLVCRATPLQQSLYLRC----VEYWDARASRDSH--------LSVTHA 658
L K E ++ C + LQ+ LY V D + + H ++
Sbjct: 1002 EVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDG-SEKGKHGKGGAKALMNTIVQ 1060
Query: 659 LRKICNHPGLVQ 670
LRK+CNHP + Q
Sbjct: 1061 LRKLCNHPFMFQ 1072
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 286 (105.7 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 91/292 (31%), Positives = 146/292 (50%)
Query: 357 SGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA 416
+G+P+ F V++ +Q +G+ +L R+ L + G ILADEMGLGKT+QCIA
Sbjct: 189 NGQPVPFQQPKHFTGGVMRWYQVEGMEWL--RM--LWENGING-ILADEMGLGKTVQCIA 243
Query: 417 LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE--DY 474
I ++++G G P L+ P S NW EFK++ YH ++++ +
Sbjct: 244 TIALMIQRGVPG-PF----LVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTREDRRKLVKN 298
Query: 475 VYSR-----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
++ R + PV++ S+E+ +R + + LI DEGHR+KN K +L + N
Sbjct: 299 IHKRQGTLQIHPVVVTSFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNA 358
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
++LL+GTPLQN+L E + L +F P V L+ F F+ L + + ++
Sbjct: 359 DNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQN 418
Query: 590 ELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
L L + F+LRR SDV A + KRE ++ Q+ Y V
Sbjct: 419 VLH--MLHQILTPFLLRRLKSDV-ALEVPPKREVVVYAPLCNKQEIFYTAIV 467
Score = 55 (24.4 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 659 LRKICNHPGLVQQP-DMMEEE 678
LRK CNHP +++ P D + +E
Sbjct: 550 LRKCCNHPYMIEYPIDPVTQE 570
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 292 (107.8 bits), Expect = 2.5e-22, P = 2.5e-22
Identities = 107/320 (33%), Positives = 155/320 (48%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LK +Q +GV +L L L G ILAD+MGLGKT+Q I + L G G P
Sbjct: 202 LKSYQLKGVKWLIS----LWQNGLNG-ILADQMGLGKTIQTIGFLSHLKGNGLDG-PY-- 253
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAED----YVYSRVSP---VLIIS 486
L++ P S SNW +E ++ YH KN+ ++ ++ V P ++I S
Sbjct: 254 --LVIAPLSTLSNWFNEIARFTPSINAIIYH-GDKNQRDELRRKHMPKTVGPKFPIVITS 310
Query: 487 YEMLIRAYQTIV-DTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
YE+ + + I+ + ++ DEGHRLKN K KL + L + ++LL+GTPLQN+L
Sbjct: 311 YEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLS 370
Query: 546 EFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAG--- 602
E + L +F P + S EF F+ E N EA K E R +Q+ + G
Sbjct: 371 ELWSLLNFILPDIFTSHDEFESWFD--FSEK---NKNEATKEEEEKRRAQVVSKLHGILR 425
Query: 603 -FILRRTS-DVQASLLNSKRETLLVCRATP----LQQSLYLRCVE-YWDARASRDSHL-- 653
FILRR DV+ SL K+E ++ T Q+ L +E + A R
Sbjct: 426 PFILRRMKCDVELSLPR-KKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKG 484
Query: 654 ---SVTHALRKICNHPGLVQ 670
++ LRK CNHP L+Q
Sbjct: 485 KLNNLVIQLRKNCNHPDLLQ 504
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 288 (106.4 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 93/292 (31%), Positives = 145/292 (49%)
Query: 357 SGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA 416
+G+P+ F V++ +Q +G+ +L R+ L + G ILADEMGLGKT+QCIA
Sbjct: 207 NGQPVPFQQPKHFTGGVMRWYQVEGMEWL--RM--LWENGING-ILADEMGLGKTVQCIA 261
Query: 417 LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQ--KNKAEDY 474
I ++++G G P L+ P S NW EF+++ YH Q + K
Sbjct: 262 TIALMIQRGVPG-PF----LVCGPLSTLPNWMAEFQRFTPDIPTMLYHGTQQERRKLVKN 316
Query: 475 VYSR-----VSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
++ R + PV+I S+E+ +R + + LI DEGHR+KN K +L + N
Sbjct: 317 IHKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNA 376
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
++LL+GTPLQN+L E + L +F P V L+ F F+ L + + ++
Sbjct: 377 DNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQN 436
Query: 590 ELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
L L + F+LRR SDV A + KRE ++ + Q+ Y V
Sbjct: 437 VLH--MLHQILTPFLLRRLKSDV-ALEVPPKREVVVYAPLSKKQEIFYTAIV 485
Score = 57 (25.1 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 659 LRKICNHPGLVQQP-DMMEEE 678
LRK CNHP L++ P D + +E
Sbjct: 568 LRKCCNHPYLIEYPIDPVTQE 588
Score = 38 (18.4 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 12 ILNEAYLDQEEQFDST-LSKE 31
++ +A L++EEQ ++ L +E
Sbjct: 25 VITQAMLEEEEQLEAAGLERE 45
>UNIPROTKB|E7EU19 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
IPI:IPI00916394 ProteinModelPortal:E7EU19 SMR:E7EU19 PRIDE:E7EU19
Ensembl:ENST00000296477 ArrayExpress:E7EU19 Bgee:E7EU19
Uniprot:E7EU19
Length = 1161
Score = 248 (92.4 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 59/173 (34%), Positives = 96/173 (55%)
Query: 503 DLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSL 562
D++ICDEGHR+KN ++ + + + R+R++L+G PLQN+L E++ + DF P LG+
Sbjct: 152 DVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTR 211
Query: 563 REFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRET 622
+EF FE PIL + +ST L RS L GF+ RR V L +K E
Sbjct: 212 QEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 271
Query: 623 LLVCRATPLQQSLYLRCVE-YWDARASRDSHLSVTHALR---KICNHPGLVQQ 671
+++ R + +Q+ LY + ++ + D +S L+ A KI NHP ++ +
Sbjct: 272 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYE 324
Score = 99 (39.9 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 40/120 (33%), Positives = 53/120 (44%)
Query: 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
MGLGKTLQ I+ I L R P + VL + P + NW EF WL P
Sbjct: 1 MGLGKTLQVISFIDVLFRHTP-----AKTVLAIVPVNTLQNWLAEFNMWLPPPEALP--- 52
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
NK E+ V R V I++ E A + V ++ EG L G ++Y L+T
Sbjct: 53 -ADNKPEE-VQPRFFKVHILNDEHKTMASRAKVMADW----VSEGGVLLMGY-EMYRLLT 105
Score = 54 (24.1 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 195 VLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYE 248
VL + P + NW EF WL P NK E+ V R V I++ E
Sbjct: 25 VLAIVPVNTLQNWLAEFNMWLPPPEALP----ADNKPEE-VQPRFFKVHILNDE 73
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 299 (110.3 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 93/292 (31%), Positives = 148/292 (50%)
Query: 357 SGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIA 416
+G+P+ F V++ +Q +G+ +L R+ L + G ILADEMGLGKT+QCIA
Sbjct: 216 NGQPVPAQQPQLFTGGVMRWYQVEGIEWL--RM--LWENGING-ILADEMGLGKTIQCIA 270
Query: 417 LIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKN------K 470
I ++ + V+ L+V P S NW EFK++ + YH QK K
Sbjct: 271 HIAMMVEK-----KVLGPFLVVAPLSTLPNWISEFKRFTPEVSVLLYHGPQKERLDLVKK 325
Query: 471 AEDYVYS-RVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNI 529
+ S R+ PV++ S+E+ +R + + ++ LI DEGHR+KN +L + + L
Sbjct: 326 IRQHQGSLRMCPVVVTSFEIAMRDRKFLQRFHWNYLIVDEGHRIKNLNCRLVQELKMLPT 385
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
++LL+GTPLQN+L E + L +F P V L+ F F+ + S + N ++
Sbjct: 386 DNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDISTITSDAENIVANEREQN 445
Query: 590 ELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCV 640
L L F+LRR SDV + K+E ++ T Q++ Y+ V
Sbjct: 446 ILHMLHLI--LTPFLLRRLKSDVTLEV-PPKKEIVVYAPLTNKQEAFYMAIV 494
Score = 41 (19.5 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 659 LRKICNHPGLVQQP 672
L++ CNH L++ P
Sbjct: 583 LKRCCNHAYLIEYP 596
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 298 (110.0 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 98/315 (31%), Positives = 147/315 (46%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ LK +Q QG+ ++ L + +L G ILADEMG GKT+Q IALI L+
Sbjct: 727 INGTLKHYQLQGLEWMVS----LYNNNLNG-ILADEMGPGKTIQTIALITYLMEHKGLNG 781
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSRVSPVLIISY 487
P LI+ P S SNW EF KW Y + + S L+ +Y
Sbjct: 782 PY----LIIVPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQLRSGKFNALLTTY 837
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQE 546
E +I+ + + +I DEGHR+KN KL +++ T +RILL+GTPLQN L E
Sbjct: 838 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 897
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + S F + F P + ++++ +R +L K F+LR
Sbjct: 898 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR--RLHKVLRPFLLR 955
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSV 655
R S L K E ++ C + LQ+ LY + + D + + ++
Sbjct: 956 RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT 1015
Query: 656 THALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 1016 IMQLRKICNHPYMFQ 1030
Score = 50 (22.7 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 280 SPGNDSGIPSLPRKSDSGIGSLPCKRPLEESTAETLQCNQINSHLSVTHALRKICNHPGL 339
+PG S + L +K S I P ++P E LQ + + H ++++ + PG
Sbjct: 318 APGQPSPVLQLQQKQ-SRIS--PIQKPQGLDPVEILQEREYRLQARIAHRIQELESLPGS 374
Query: 340 VQQPDV 345
+ PD+
Sbjct: 375 LP-PDL 379
Score = 42 (19.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 14 NEAYLDQEEQFDSTLSKENHNYVYPEPGGTEVSE 47
+E+ ++E++ + + +E + +P EVSE
Sbjct: 645 SESDYEEEDEEEESSRQETEEKILLDPNSKEVSE 678
Score = 42 (19.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 20/89 (22%), Positives = 35/89 (39%)
Query: 275 PPSGNSPGNDSGIPSLPRKSDSGIGSL--PCKRPLEESTAETLQCNQINSHLSVTHALRK 332
PPS + P + G P++ G+ L P ++ E + C + ++R
Sbjct: 50 PPSVSHPMSTMGSADFPQE---GLHQLHKPMDGIHDKGIVEGVHCGSMKGT-----SMRP 101
Query: 333 ICNHPGLVQQPDVMEEEGQWKHNPSGKPL 361
HPG+ M++ Q +P PL
Sbjct: 102 --PHPGVGPPQSPMDQHSQGYMSPHPSPL 128
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 309 (113.8 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 100/315 (31%), Positives = 149/315 (47%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
++ LK +Q QG+ ++ L + +L G ILADEMGLGKT+Q IALI L+
Sbjct: 694 INGTLKHYQLQGLEWMVS----LYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNG 748
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSRVSPVLIISY 487
P LI+ P S SNW EF KW Y + + S VL+ +Y
Sbjct: 749 PY----LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY 804
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELM-TGLNIRKRILLSGTPLQNDLQE 546
E +I+ + + +I DEGHR+KN KL +++ T +RILL+GTPLQN L E
Sbjct: 805 EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPE 864
Query: 547 FFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILR 606
+ L +F P + S F + F P + ++++ +R +L K F+LR
Sbjct: 865 LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIR--RLHKVLRPFLLR 922
Query: 607 RTSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA-------RASRDSHLSV 655
R S L K E ++ C + LQ+ LY + + D + + ++
Sbjct: 923 RLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNT 982
Query: 656 THALRKICNHPGLVQ 670
LRKICNHP + Q
Sbjct: 983 IMQLRKICNHPYMFQ 997
Score = 38 (18.4 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 203 LTSNWNDEFKKWLGL 217
+ S+ N FKK LGL
Sbjct: 317 ILSHLNQNFKKGLGL 331
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 296 (109.3 bits), Expect = 3.1e-22, P = 3.1e-22
Identities = 96/344 (27%), Positives = 172/344 (50%)
Query: 356 PSGKP-LVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQC 414
P +P + D+ LK +Q +G+++L ++ + G ILADEMGLGKT+Q
Sbjct: 516 PEPRPEMKDLPQPKMFKGTLKGYQIKGMTWL----ANIYDQGISG-ILADEMGLGKTVQS 570
Query: 415 IALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA--- 471
IA + + YG V L+++P+S NW E +++ ++ PY + +
Sbjct: 571 IAFLCHIAEH--YG--VWGPFLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAERKILR 626
Query: 472 ----EDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
+ ++++R + V+I SY++++ Y+ ++ ++ DE +K+ S+ ++L+
Sbjct: 627 QFWDQKHLHTRDASFHVVITSYQLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLL 686
Query: 526 GLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQ 585
G + R R+LLSGTP+QN + E + L F P + S EF + F + I ES + N T
Sbjct: 687 GFSCRNRLLLSGTPIQNSMAELWALLHFIMPTLFDSHDEFNEWFSKDI-ESHAENKT--- 742
Query: 586 KSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLVCRATPLQQSLY------LR 638
+ E + S+L F+LRR DV+ L + K E ++ C T Q+ LY +R
Sbjct: 743 -GIDEKQISRLHMILKPFMLRRIKKDVENEL-SDKIEIMVYCPLTIRQKLLYRALKQKIR 800
Query: 639 CVEYW---------DARASRDSHLSVTHALRKICNHPGLVQQPD 673
+ + +S + +++ RK+CNHP L ++ D
Sbjct: 801 IEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVCNHPELFERRD 844
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 231 (86.4 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 69/213 (32%), Positives = 105/213 (49%)
Query: 468 KN-KAEDYVYSRV----SPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYE 522
KN K D + +RV S +LI +YE L + +++ E+ + DEGHR++N S +
Sbjct: 500 KNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITL 559
Query: 523 LMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNST 582
+ L RI+++G P+QN L E + L DF PG LG L F F PI N++
Sbjct: 560 VCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANAS 619
Query: 583 EAQKSLGELRSSQLAKRTAGFILRRT-SDVQASLLNSKRETLLVCRATPLQQSLYLRCVE 641
Q S + L ++LRR +DV A L K E +L C T Q+S Y +
Sbjct: 620 PLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHL-TKKTEHVLFCSLTVEQRSTYRAFLA 678
Query: 642 YWDARASRDSHLSVTHAL---RKICNHPGLVQQ 671
+ D + + + + RKICNHP L+++
Sbjct: 679 SSEVEQIFDGNRNSLYGIDVMRKICNHPDLLER 711
Score = 116 (45.9 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 32/83 (38%), Positives = 44/83 (53%)
Query: 372 RVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPV 431
R L +QR GV +L+E C A G I+ DEMGLGKT+Q ++ + +L Y P
Sbjct: 383 RKLFDYQRVGVQWLWELHCQRA-----GGIIGDEMGLGKTIQVLSFLGSLHFSKMY-KPS 436
Query: 432 IRKVLIVTPSSLTSNWNDEFKKW 454
I I+ P +L W E +KW
Sbjct: 437 I----IICPVTLLRQWRREAQKW 455
Score = 45 (20.9 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 196 LIVTPSSLTSNWNDEFKKW 214
+I+ P +L W E +KW
Sbjct: 437 IIICPVTLLRQWRREAQKW 455
>WB|WBGene00000803 [details] [associations]
symbol:csb-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0004427 "inorganic
diphosphatase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009650
GeneTree:ENSGT00590000083118 KO:K10841 EMBL:Z81089 PIR:T22595
RefSeq:NP_510607.2 ProteinModelPortal:Q93781 SMR:Q93781
EnsemblMetazoa:F53H4.1 GeneID:181674 KEGG:cel:CELE_F53H4.1
UCSC:F53H4.1 CTD:181674 WormBase:F53H4.1 HOGENOM:HOG000020742
InParanoid:Q93781 OMA:GDICNHP NextBio:914906 Uniprot:Q93781
Length = 957
Score = 292 (107.8 bits), Expect = 3.8e-22, P = 3.8e-22
Identities = 97/321 (30%), Positives = 152/321 (47%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP--YGMPV 431
L Q++GV +L ++ D S G ILADEMGLGKT+Q + + ++ Y
Sbjct: 194 LHKFQQEGVEWLQKKT-DHRS----GGILADEMGLGKTIQSVVFLRSIQETARTHYKTTG 248
Query: 432 IRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN-QKNKAEDYVYS---------RVSP 481
+ LIV S+ + W E +W R+ H + + EDYV S + P
Sbjct: 249 LDTALIVCHVSIIAQWIKELNQWFPKARVFLLHSHCSTGRQEDYVGSIFRKLQRRRKEYP 308
Query: 482 ---VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGT 538
+++ +Y + + + IV + ++I DEGH ++N +K M L +R +L+GT
Sbjct: 309 DGAIILTTYSLFTKLKKPIVKHLWQVVILDEGHYIRNENTKCSIAMRKLMTTQRFILTGT 368
Query: 539 PLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPN-STEAQKSLGE-LRSSQL 596
P QN L EF+ L DF +PG L F +NF I + N S EA E L + +
Sbjct: 369 PFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSPEAAAKAYECLVALHI 428
Query: 597 AKRTAGFILRRTSDVQASLLN--SKRETLLVCRATPLQQSLYLRCVEYWDARASRD---- 650
A + ILRR + +L K+E +L C + Q+ LY+ EY ++ +
Sbjct: 429 AVKP--LILRRLQEDHKEVLQLPEKQEIVLSCELSKRQRRLYM---EYGNSHQVNEIIER 483
Query: 651 ---SHLSVTHALRKICNHPGL 668
+ + + H L ICNHPG+
Sbjct: 484 RLKAFVGINH-LTNICNHPGI 503
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 310 (114.2 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 99/317 (31%), Positives = 149/317 (47%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+P+Q +G+++L + + ILADEMGLGKT+Q + + ++ G G P
Sbjct: 2029 LRPYQLEGLNWL-----KFSWYNTHNCILADEMGLGKTIQSLTFVHSVYEYGIRG-PF-- 2080
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH--VNQKNKAEDYVY------SRV--SP-- 481
L++ P S NW EF+ W + + YH V K +DY Y +V P
Sbjct: 2081 --LVIAPLSTIPNWQREFEGWTDMN-VVVYHGSVTSKQMIQDYEYYYKTESGKVLKEPIK 2137
Query: 482 --VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTP 539
VLI ++EM++ Y + + L + DE HRLKN KL E + LN+ R+LLSGTP
Sbjct: 2138 FNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTP 2197
Query: 540 LQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKR 599
LQN++ E F L +F P S EF F S ++ + +L++ L K
Sbjct: 2198 LQNNISELFSLLNFLEPSQFSSQEEFMSEF----------GSLRTEEEVNKLQA--LLKP 2245
Query: 600 TAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEY-------WDARASRDSH 652
+LRR D L K ET++ T +Q+ Y +E A+ +
Sbjct: 2246 ---MMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYYRGILEQNFSFLKKGTTSANIPNL 2302
Query: 653 LSVTHALRKICNHPGLV 669
++ LRK C HP L+
Sbjct: 2303 MNTMMELRKCCIHPYLL 2319
Score = 48 (22.0 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 20/95 (21%), Positives = 37/95 (38%)
Query: 291 PRKSDSGIGSLPCKRP---LEESTAETLQCNQINSHLSVTHALRKICNHPGLVQQPDVME 347
P+ S +G P K P ++ + Q Q+ S+ H+++ + P QP
Sbjct: 419 PQMSPRPVGVSPAKPPPPQQQQQQTQAQQPQQVVSNQPSQHSIQGMVGLPSPRPQPPTSG 478
Query: 348 EEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGV 382
G P+ T+ L +++ P Q G+
Sbjct: 479 AGGAGAKGPAPVAAPVNTLQA-LEQMVMPSQALGL 512
Score = 42 (19.8 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 259 DTEFDLLICDEKSLLKPPSGNSPGNDSGI------PSLPRKSDSG--IGSLPCKRPLEES 310
D E LL+ K PS N+ +++G P + D+ +G PL+ES
Sbjct: 1541 DDENSLLVASPVKKDKKPSANASNSNAGSDVEKTEPQSGAEGDAAQEVGEEKSNLPLDES 1600
Query: 311 T 311
+
Sbjct: 1601 S 1601
Score = 41 (19.5 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 339 LVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQ 380
L+++P +EE G+ K + P V D + V +P Q+Q
Sbjct: 1032 LLEEPKTVEESGEDKSQSA--PGVAPPADPIIP-VTQPPQQQ 1070
Score = 37 (18.1 bits), Expect = 5.5e-21, Sum P(2) = 5.5e-21
Identities = 17/67 (25%), Positives = 25/67 (37%)
Query: 273 LKPPSGNSPGNDSGIPSLPRKSDSG----IGSLPCKRPLEE-STAETLQCNQINSHLSVT 327
+ PP G +PG P L ++ + I L C P E + L Q +L
Sbjct: 1098 MMPPYGGAPGMYPPYPMLHQQEIAALQQQIQELYCMPPGHELQHQDKLMRMQERLNLLTQ 1157
Query: 328 HALRKIC 334
H + C
Sbjct: 1158 HEVNDQC 1164
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 302 (111.4 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 102/359 (28%), Positives = 174/359 (48%)
Query: 347 EEEGQWK-HNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADE 405
EEE + NP+ + + L+ LK +Q +G+++L +L + G ILADE
Sbjct: 678 EEEDELNFQNPTSLGEITIEQPKILACTLKEYQLKGLNWL----ANLYDQGING-ILADE 732
Query: 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
MGLGKT+Q I+++ L P L+VTP+S NW +E K+L ++ PY
Sbjct: 733 MGLGKTVQSISVLAHLAENHNIWGPF----LVVTPASTLHNWVNEISKFLPQFKILPYWG 788
Query: 466 NQKNKA--------EDYVYSRVSP--VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKN 515
N ++ ++ Y++ +P V++ SY+M++ + ++ +I DE +K+
Sbjct: 789 NANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKS 848
Query: 516 GKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILE 575
+S ++ + + R R+LL+GTP+QN +QE + L F P + S EF + F + I E
Sbjct: 849 SQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDI-E 907
Query: 576 SRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSL 635
S + +T+ + +LR + + F+LRR S L K E ++C T Q L
Sbjct: 908 SHAEANTKLNQQ--QLRRLHMILKP--FMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKL 963
Query: 636 YL----RCVEYWDA---RASRDSH-------------LSVTHALRKICNHPGLVQQPDM 674
Y + +DA A+ DS ++ RK+CNHP L ++ D+
Sbjct: 964 YQVLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDLFERADV 1022
Score = 43 (20.2 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 8 NVLDILNEAYLDQEEQFD 25
N+ DI+NE D++E+ D
Sbjct: 131 NLSDIINEKDADEDEEDD 148
Score = 39 (18.8 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 203 LTSNWNDEFKKW 214
L S WN + K W
Sbjct: 83 LISEWNQQSKDW 94
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 291 (107.5 bits), Expect = 5.3e-22, P = 5.3e-22
Identities = 92/305 (30%), Positives = 149/305 (48%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
++ +Q +G+++L L + G ILADEMGLGKTLQ I++I + P
Sbjct: 132 MRDYQVRGLNWL----ASLQHNKING-ILADEMGLGKTLQTISMIGYMKHYKNKASPH-- 184
Query: 434 KVLIVTPSSLTSNWNDEFKKW---LGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEML 490
L++ P S NW +EFKKW + + + D + + V +YEM+
Sbjct: 185 --LVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCCTTYEMM 242
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550
++ + + +I DE HR+KN KSKL E + LN R+L++GTPLQN+L E + L
Sbjct: 243 LKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWAL 302
Query: 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-S 609
+F P + S +F F ++ S N+ Q+ L K F+LRR S
Sbjct: 303 LNFLLPDIFTSSDDFDSWFSN---DAMSGNTDLVQR---------LHKVLQPFLLRRIKS 350
Query: 610 DVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDA--RASRDSHLSVTHALRKIC 663
DV+ SLL K+E + + +Q+ Y ++ ++ + + + +++ LRK
Sbjct: 351 DVEKSLL-PKKEVKVYVGLSKMQREWYTKVLMKDIDIINGAGKVEKARLMNILMHLRKCV 409
Query: 664 NHPGL 668
NHP L
Sbjct: 410 NHPYL 414
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 291 (107.5 bits), Expect = 5.4e-22, P = 5.4e-22
Identities = 101/323 (31%), Positives = 156/323 (48%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q+ G+++L + L G ILADEMGLGKT+Q IA + L ++G G P
Sbjct: 492 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLFQEGNKG-PH-- 543
Query: 434 KVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKAEDY-VYSRVSP--VLIISYEM 489
LIV P+S NW E W L +C Y ++ K + ++++ V++ +Y
Sbjct: 544 --LIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNC 601
Query: 490 LIRAYQT---IVDTEFDLLICDEGHRLKN-GKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
I + + + I DEGH LKN G + LMT +N R R+LL+GTP+QN+L
Sbjct: 602 AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INARNRLLLTGTPVQNNLL 660
Query: 546 EFFYLNDFANPGVLGS-LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E L +F P + S E R+ F + + E ++ + Q+ K FI
Sbjct: 661 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIA---HAKQIIKP---FI 714
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARASRDSHLSVTHALR 660
LRR + LL K++ + +C + Q+ LY R + + +V LR
Sbjct: 715 LRRVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQLR 774
Query: 661 KICNHPGLVQQ---PDMMEEEGQ 680
K+ NHP L +Q P+ ++E Q
Sbjct: 775 KMANHPLLHRQYYTPEKLKEMSQ 797
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 311 (114.5 bits), Expect = 6.4e-22, Sum P(2) = 6.4e-22
Identities = 103/312 (33%), Positives = 153/312 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLR----QGPYGM 429
L+ +Q G+ +L L + L G ILADEMGLGKT+Q I+LI L+ +GP+
Sbjct: 754 LREYQMNGLRWLVS----LYNNHLNG-ILADEMGLGKTVQVISLICYLMETKNDRGPF-- 806
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPY--HVNQKNKA--EDYVYSRVSPVLII 485
L+V PSS+ W E W Y +++ K E V+ + + VL+
Sbjct: 807 ------LVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFN-VLLT 859
Query: 486 SYEMLIRAYQT--IVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQND 543
+YE L+ + + + +I DEGHR+KN KL + R+LL+GTPLQN+
Sbjct: 860 TYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNN 919
Query: 544 LQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGE--LRSSQLAKRTA 601
L+E + L +F P + S +F + F +P + ++ EA S E L ++L +
Sbjct: 920 LEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLR 979
Query: 602 GFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDA---RASRDSHLSVTHA 658
F+LRR + L K E L+ C A+ Q+ L R + + SR H SV
Sbjct: 980 PFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVME- 1038
Query: 659 LRKICNHPGLVQ 670
LR ICNHP L Q
Sbjct: 1039 LRNICNHPYLSQ 1050
Score = 41 (19.5 bits), Expect = 6.4e-22, Sum P(2) = 6.4e-22
Identities = 22/101 (21%), Positives = 46/101 (45%)
Query: 38 PEPGGTEVSEAQNSNHATSVTRIFNVVYGKPSAKKHKSWEQDGVL---EISGTMAILKDT 94
P PGGT+ ++ +++ A S + GK + +++ + D ++ G+ + +
Sbjct: 79 PHPGGTQTEDSGSAHLAGSSQAVGVSNEGKATLVENEMTKYDAFTSGRQLGGSNSASQTF 138
Query: 95 L-GKVIDSKVKILDEIKPGTSSLQSSPRLNASDNVQSSTVN 134
G S + D P S+L S+ ++ N +S T+N
Sbjct: 139 YQGSGTQSN-RSFDRESP--SNLDSTSGISQPHN-RSETMN 175
Score = 37 (18.1 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 10/54 (18%), Positives = 25/54 (46%)
Query: 68 PSAKKHKSWEQDGVLEISGTMAILKDTLGKV--IDSKVKILDEIKPGTSSLQSS 119
P + H S + G+ ++S ++ + G++ +D K + + G S ++
Sbjct: 329 PKGRTHTSSDLGGIPDVSALLSRTDNPTGRLDEMDFSSKETERSRLGEKSFANT 382
>DICTYBASE|DDB_G0293120 [details] [associations]
symbol:DDB_G0293120 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293120
GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000199 RefSeq:XP_629344.1
ProteinModelPortal:Q54C75 EnsemblProtists:DDB0233083 GeneID:8629068
KEGG:ddi:DDB_G0293120 InParanoid:Q54C75 OMA:KGCILAH Uniprot:Q54C75
Length = 2205
Score = 294 (108.6 bits), Expect = 7.4e-22, P = 7.4e-22
Identities = 92/331 (27%), Positives = 159/331 (48%)
Query: 363 DVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLL 422
D+ +D + LKPHQ GV FL++ + +G ILA MGLGK+LQ IA + T
Sbjct: 1502 DILLDPEIGCFLKPHQHSGVQFLWDNMVFKG----KGCILAHSMGLGKSLQVIAFLHTHN 1557
Query: 423 R--QGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVN--QKNKAEDYVYSR 478
R +G + ++ + W + +K + P H + ++ D +S
Sbjct: 1558 RYHKGTKYLLIVPANTLYNWEKEFKKWLPKSEKSTNIRVFAPRHKDLVRRFPTFDNWFSG 1617
Query: 479 VSPVLIISYEML-------IRA-YQTIVDT-EFDLLICDEGHRLKNGKSKLYELMTGLNI 529
VL +++E I+ + +I E D LI DEGHRLK+ K+K+ + +
Sbjct: 1618 -GGVLAMTFESFSSTINRHIKERHPSIAKILETDFLIVDEGHRLKSTKTKISDAANLIKT 1676
Query: 530 RKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLG 589
+++LL+G PLQN+L E++ + D+ P LG+ +EF+ F +PI S E L
Sbjct: 1677 HRKVLLTGYPLQNNLMEYYTMIDYIRPLHLGNEKEFKDRFVKPIAAGTKSESNERDIKLM 1736
Query: 590 ELRSSQLAKRTAGFILRRTSDV-QASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARAS 648
R + L F+ R +V + SK E +++ + T +Q L +E ++
Sbjct: 1737 RGRLAALQSLIKDFVQRLGPEVLDREMQVSKSEKMILVKRTDIQSKL----LEISIQNSN 1792
Query: 649 RDSHLSVTHALRKICNHP-GLVQQPDMMEEE 678
+ H + L +CNHP GL+++ ++ ++
Sbjct: 1793 FNDHFAQYEVLTVVCNHPDGLLEKKPLVTKD 1823
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 291 (107.5 bits), Expect = 8.5e-22, P = 8.5e-22
Identities = 109/350 (31%), Positives = 164/350 (46%)
Query: 353 KHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTL 412
K NP D T + FL +L P+Q +G++FL + ILADEMGLGKT+
Sbjct: 253 KRNPRDFQQFDHTPE-FLKGLLHPYQLEGLNFLR-----FSWSKQTHVILADEMGLGKTI 306
Query: 413 QCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWL---------------GL 457
Q IAL+ +L + +P L++ P S NW EF W +
Sbjct: 307 QSIALLASLFEENL--IPH----LVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAV 360
Query: 458 TRMCPYHVNQ-----KNKAEDYVYS-----RVS-PVLIISYEMLIRAYQTIVDTEFDLLI 506
R +++++ K K + S R+ VL+ SYEM+ + +++ +I
Sbjct: 361 IREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMI 420
Query: 507 CDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFR 566
DEGHRLKN SKL+ +T + RILL+GTPLQN+L E F L F + G GSL EF+
Sbjct: 421 VDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 480
Query: 567 KNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLLV 625
+ F++ N E + S+L K A +LRR DV + K+E +L
Sbjct: 481 EEFKDI-------NQEE--------QISRLHKMLAPHLLRRVKKDVMKDM-PPKKELILR 524
Query: 626 CRATPLQQSLYLRCV--EYWDARASRDSHLSVTHA---LRKICNHPGLVQ 670
+ LQ+ Y Y + +S+ + LRK+C HP +++
Sbjct: 525 VDLSSLQKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLE 574
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 287 (106.1 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 96/311 (30%), Positives = 148/311 (47%)
Query: 373 VLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVI 432
VLKP+Q+ G+++L L ILADEMGLGKT+Q IA + L G G P
Sbjct: 473 VLKPYQKIGLNWLA-----LLHKHKVNMILADEMGLGKTVQAIAFLAHLYVTGDSG-PH- 525
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAE-DY-VYSRVSP--VLIISYE 488
L+V P+S NW EF +W + Y+ +Q+ + Y + ++V V++ +Y
Sbjct: 526 ---LVVVPASTMDNWIREFNQWCPSMNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYN 582
Query: 489 MLIRAYQT---IVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
I + + + + + DEGH LKN + Y+ + LN R R+LL+GTP+QN+L
Sbjct: 583 CAISSAEDRSLFRRLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLL 642
Query: 546 EFFYLNDFANPGVLGS-LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E L +F P + S E ++ F S ST+ Q + R + + FI
Sbjct: 643 ELMSLLNFVMPHMFSSSTSEIKRLF------SSKAKSTDEQTIFEKERIAHAKQIMKPFI 696
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARASRDSHLSVTHALR 660
LRR L K++ + C+ + Q+ LY + + DA +V LR
Sbjct: 697 LRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLYSDLLNKLKKSIDATEKNSELCNVMMHLR 756
Query: 661 KICNHPGLVQQ 671
K+ NHP L +Q
Sbjct: 757 KMANHPLLHRQ 767
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 287 (106.1 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 99/311 (31%), Positives = 148/311 (47%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q+ G+++L + L G ILADEMGLGKT+Q IA + L ++G G P
Sbjct: 500 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKG-PH-- 551
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDY-VYSRVSP--VLIISYEM 489
LIV P+S NW E W + +C Y ++ K Y ++S+ V++ +Y
Sbjct: 552 --LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNC 609
Query: 490 LIRAYQT---IVDTEFDLLICDEGHRLKN-GKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
I + + + I DEGH LKN G + LMT +N R+LL+GTP+QN+L
Sbjct: 610 AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLL 668
Query: 546 EFFYLNDFANPGVLGS-LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E L +F P + S E R+ F S S + Q + R + + FI
Sbjct: 669 ELMSLLNFVMPHMFSSSTSEIRRMF------SSKTKSADEQSIYEKERIAHAKQIIKPFI 722
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARASRDSHLSVTHALR 660
LRR + L K++ + +C + Q+ LYL R + + +V LR
Sbjct: 723 LRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNMEKNTEMCNVMMQLR 782
Query: 661 KICNHPGLVQQ 671
K+ NHP L +Q
Sbjct: 783 KMANHPLLHRQ 793
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 288 (106.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 95/290 (32%), Positives = 150/290 (51%)
Query: 398 EGAILADEMGLGKTLQCIALI-WTLL--RQ-GPYGMPVIRKVLIVTPSSLTSNWNDEFKK 453
E ILADEMGLGKT+Q +A + W + RQ GP+ L+V P S W + F+K
Sbjct: 381 ENGILADEMGLGKTVQTVAFLSWLIYARRQNGPH--------LVVVPLSTVPAWQETFEK 432
Query: 454 WLGLTRMCPYHVNQ---KNKAEDY-VYSRV-SP---VLIISYEMLIRAYQTIVDTEFDLL 505
W C Y++ + +Y +Y++ P VL+ +YE +++ + ++ L
Sbjct: 433 WAPDVN-CVYYLGNGEARKTIREYELYNQNRKPKFNVLLTTYEYILKDKNELGAFKWQFL 491
Query: 506 ICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREF 565
DE HRLKN +S LYE + G + R+L++GTPLQN+++E L +F PG +E
Sbjct: 492 AVDEAHRLKNAESSLYEALKGFKVSNRLLITGTPLQNNVKELAALCNFLMPGKFTIDQEI 551
Query: 566 RKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRTS-DVQASLLNSKRETLL 624
+FE ++S E ++ + +L+ K+ + FILRR DV+ SL SK E +L
Sbjct: 552 --DFET--IDS------EQEQYIKDLQ-----KKISPFILRRLKKDVEKSL-PSKSERIL 595
Query: 625 VCRATPLQQSLYLRCV-EYWDA-----RASRDSHLSVTHALRKICNHPGL 668
+ +Q Y + + + A R S+ S L++ L+K NHP L
Sbjct: 596 RVELSDIQTEYYKNIITKNYAALNAGNRGSQISLLNIMSELKKASNHPYL 645
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 286 (105.7 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 104/324 (32%), Positives = 156/324 (48%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGP-YGMPVI 432
L+ +Q +G+++L C S+ ILADEMGLGKT+Q I+ + L Q YG P
Sbjct: 486 LRDYQLEGLNWLAHSWCKSNSV-----ILADEMGLGKTIQTISFLSYLFHQHQLYG-PF- 538
Query: 433 RKVLIVTPSSLTSNWNDEFKKWLGLTRMCPY--HVNQKNKAEDY--VYSRVSPV----LI 484
LIV P S ++W EF+ W + Y + +N +Y ++S+ + LI
Sbjct: 539 ---LIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 485 ISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDL 544
+YE+L++ + + L DE HRLKN S LY+ + R+L++GTPLQN L
Sbjct: 596 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 655
Query: 545 QEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
+E + L F P EF ++FEE + R N ++ L K F+
Sbjct: 656 KELWSLLHFIMPEKF----EFWEDFEEDHGKGRE-NGYQS-----------LHKVLEPFL 699
Query: 605 LRRTS-DVQASLLNSKRETLLVCRATPLQQSLY--LRCVEYW----DARASRDSHLSVTH 657
LRR DV+ SL +K E +L + LQ+ Y + Y R S L++
Sbjct: 700 LRRVKKDVEKSL-PAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVM 758
Query: 658 ALRKICNHPGLVQQPDMMEEE-GQ 680
L+K CNH L++ P+ E E GQ
Sbjct: 759 ELKKCCNHCYLIKPPEENERENGQ 782
Score = 49 (22.3 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 18/74 (24%), Positives = 31/74 (41%)
Query: 209 DEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQ-TIVDTEFDLLIC 267
DE K+WLG ++ P V N ++ I+ + ++ + T+ T+F I
Sbjct: 345 DEIKQWLG--KVSPEDVEYFNCQQELASELNKQYQIVERVIAVKTSKSTLGQTDFPGEIA 402
Query: 268 DEKSLLKPPSGNSP 281
+ KP N P
Sbjct: 403 HSR---KPAPSNEP 413
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 284 (105.0 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 96/317 (30%), Positives = 154/317 (48%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q +GV++L + + ILADEMGLGKT+Q IA + + G +G P
Sbjct: 37 LREYQLEGVNWLL-----FNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHG-PF-- 88
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH--VNQKNKAEDY-VY-----SRVSP---- 481
L++ P S +NW EF W + + YH + + + Y +Y R+ P
Sbjct: 89 --LVIAPLSTITNWEREFNTWTEMNTIV-YHGSLASRQMIQQYEMYCKDSRGRLIPGAYK 145
Query: 482 --VLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTP 539
LI ++EM++ + + E+ +I DE HRLKN KL + + +++ ++LL+GTP
Sbjct: 146 FDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTP 205
Query: 540 LQNDLQEFFYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKR 599
LQN ++E F L F P S EF K+F + L++ + QK L+ L
Sbjct: 206 LQNTVEELFSLLHFLEPSQFPSESEFLKDFGD--LKTEE----QVQKLQAILKPMMLR-- 257
Query: 600 TAGFILRRTSDVQASLLNSKRETLLVCRATPLQQSLYLRCVEYWDARASRDS-H------ 652
R DV+ +L K+ET++ T +Q+ Y +E + S+ + H
Sbjct: 258 ------RLKEDVEKNLA-PKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNL 310
Query: 653 LSVTHALRKICNHPGLV 669
L+ LRK CNHP L+
Sbjct: 311 LNTMMELRKCCNHPYLI 327
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 285 (105.4 bits), Expect = 2.5e-21, P = 2.5e-21
Identities = 99/311 (31%), Positives = 148/311 (47%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q+ G+++L + L G ILADEMGLGKT+Q IA + L ++G G P
Sbjct: 497 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNNG-PH-- 548
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDY-VYSRVSP--VLIISYEM 489
LIV P+S NW E W + +C Y ++ K + ++SR V++ +Y
Sbjct: 549 --LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNC 606
Query: 490 LIRAYQT---IVDTEFDLLICDEGHRLKN-GKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
I + + + I DEGH LKN G + LMT +N R+LL+GTP+QN+L
Sbjct: 607 AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLL 665
Query: 546 EFFYLNDFANPGVLGS-LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E L +F P + S E R+ F S S + Q + R + + FI
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMF------SSKTKSADEQSIYEKERIAHAKQIIKPFI 719
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARASRDSHLSVTHALR 660
LRR + L K++ + +C + Q+ LYL R + + +V LR
Sbjct: 720 LRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLR 779
Query: 661 KICNHPGLVQQ 671
K+ NHP L +Q
Sbjct: 780 KMANHPLLHRQ 790
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 285 (105.4 bits), Expect = 2.5e-21, P = 2.5e-21
Identities = 98/311 (31%), Positives = 149/311 (47%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q+ G+++L + L G ILADEMGLGKT+Q IA + L ++G G P
Sbjct: 499 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKG-PH-- 550
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDY-VYSRVSP--VLIISYEM 489
LIV P+S NW E W + +C Y ++ K Y ++SR V++ +Y
Sbjct: 551 --LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYNC 608
Query: 490 LIRAYQT---IVDTEFDLLICDEGHRLKN-GKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
I + + + I DEGH LKN G + LMT +N R+LL+GTP+QN+L
Sbjct: 609 AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLL 667
Query: 546 EFFYLNDFANPGVLGS-LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E L +F P + S E R+ F + + E ++ + Q+ K FI
Sbjct: 668 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIA---HAKQIIKP---FI 721
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARASRDSHLSVTHALR 660
LRR + L K++ + +C + Q+ LY+ R + + +V LR
Sbjct: 722 LRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLFNRLKKSINNMEKNTEMCNVMMQLR 781
Query: 661 KICNHPGLVQQ 671
K+ NHP L +Q
Sbjct: 782 KMANHPLLHRQ 792
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 285 (105.4 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 94/305 (30%), Positives = 147/305 (48%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q G+++L L + G ILADEMGLGKTLQ I+L+ L P
Sbjct: 194 LRDYQLAGLNWLIR----LYENGING-ILADEMGLGKTLQTISLLAYLHEYRGINGPH-- 246
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKA---EDYVYSRVSPVLIISYEML 490
++V P S NW +E +++ + R + N + + E+ + + + + S+EM
Sbjct: 247 --MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMA 304
Query: 491 IRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYL 550
I+ T+ + +I DE HR+KN S L + M + R+L++GTPLQN+L E + L
Sbjct: 305 IKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWAL 364
Query: 551 NDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT-S 609
+F P V S F + F+ + + Q QL K F+LRR S
Sbjct: 365 LNFLLPEVFSSAETFDEWFQ---ISGENDQQEVVQ---------QLHKVLRPFLLRRLKS 412
Query: 610 DVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARASRDSHLSVTHALRKICNH 665
DV+ L K+ET+L + +Q+ Y + +E + R L++ LRK CNH
Sbjct: 413 DVEKGL-PPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNH 471
Query: 666 PGLVQ 670
P L Q
Sbjct: 472 PYLFQ 476
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 284 (105.0 bits), Expect = 3.2e-21, P = 3.2e-21
Identities = 99/311 (31%), Positives = 148/311 (47%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q+ G+++L + L G ILADEMGLGKT+Q IA + L ++G G P
Sbjct: 497 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKG-PH-- 548
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDY-VYSRVSP--VLIISYEM 489
LIV P+S NW E W + +C Y ++ K Y ++S+ V++ +Y
Sbjct: 549 --LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNC 606
Query: 490 LIRAYQT---IVDTEFDLLICDEGHRLKN-GKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
I + + + I DEGH LKN G + LMT +N R+LL+GTP+QN+L
Sbjct: 607 AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLL 665
Query: 546 EFFYLNDFANPGVLGS-LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E L +F P + S E R+ F S S + Q + R + + FI
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMF------SSKTKSADEQSIYEKERIAHAKQIIKPFI 719
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARASRDSHLSVTHALR 660
LRR + L K++ + +C + Q+ LYL R + + +V LR
Sbjct: 720 LRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLR 779
Query: 661 KICNHPGLVQQ 671
K+ NHP L +Q
Sbjct: 780 KMANHPLLHRQ 790
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 284 (105.0 bits), Expect = 3.2e-21, P = 3.2e-21
Identities = 99/311 (31%), Positives = 148/311 (47%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q+ G+++L + L G ILADEMGLGKT+Q IA + L ++G G P
Sbjct: 497 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKG-PH-- 548
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDY-VYSRVSP--VLIISYEM 489
LIV P+S NW E W + +C Y ++ K Y ++S+ V++ +Y
Sbjct: 549 --LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNC 606
Query: 490 LIRAYQT---IVDTEFDLLICDEGHRLKN-GKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
I + + + I DEGH LKN G + LMT +N R+LL+GTP+QN+L
Sbjct: 607 AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLL 665
Query: 546 EFFYLNDFANPGVLGS-LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E L +F P + S E R+ F S S + Q + R + + FI
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMF------SSKTKSADEQSIYEKERIAHAKQIIKPFI 719
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARASRDSHLSVTHALR 660
LRR + L K++ + +C + Q+ LYL R + + +V LR
Sbjct: 720 LRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLR 779
Query: 661 KICNHPGLVQQ 671
K+ NHP L +Q
Sbjct: 780 KMANHPLLHRQ 790
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 284 (105.0 bits), Expect = 3.2e-21, P = 3.2e-21
Identities = 99/311 (31%), Positives = 148/311 (47%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q+ G+++L + L G ILADEMGLGKT+Q IA + L ++G G P
Sbjct: 497 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKG-PH-- 548
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTR-MCPYHVNQKNKAEDY-VYSRVSP--VLIISYEM 489
LIV P+S NW E W + +C Y ++ K Y ++S+ V++ +Y
Sbjct: 549 --LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNC 606
Query: 490 LIRAYQT---IVDTEFDLLICDEGHRLKN-GKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
I + + + I DEGH LKN G + LMT +N R+LL+GTP+QN+L
Sbjct: 607 AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLL 665
Query: 546 EFFYLNDFANPGVLGS-LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E L +F P + S E R+ F S S + Q + R + + FI
Sbjct: 666 ELMSLLNFVMPHMFSSSTSEIRRMF------SSKTKSADEQSIYEKERIAHAKQIIKPFI 719
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARASRDSHLSVTHALR 660
LRR + L K++ + +C + Q+ LYL R + + +V LR
Sbjct: 720 LRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLR 779
Query: 661 KICNHPGLVQQ 671
K+ NHP L +Q
Sbjct: 780 KMANHPLLHRQ 790
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 283 (104.7 bits), Expect = 4.1e-21, P = 4.1e-21
Identities = 98/311 (31%), Positives = 150/311 (48%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q+ G+++L + L G ILADEMGLGKT+Q IA + L ++G G P
Sbjct: 495 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLFQEGNKG-PH-- 546
Query: 434 KVLIVTPSSLTSNWNDEFKKWLG-LTRMCPYHVNQKNKAEDY-VYSRVSP--VLIISYEM 489
LIV P+S NW E W L +C Y ++ K + ++++ V++ +Y
Sbjct: 547 --LIVVPASTIDNWLREVNLWCPTLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNC 604
Query: 490 LIRAYQT---IVDTEFDLLICDEGHRLKN-GKSKLYELMTGLNIRKRILLSGTPLQNDLQ 545
I + + + I DEGH LKN G + LMT +N R R+LL+GTP+QN+L
Sbjct: 605 AISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMT-INARNRLLLTGTPVQNNLL 663
Query: 546 EFFYLNDFANPGVLGS-LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFI 604
E L +F P + S E R+ F + + E ++ + Q+ K FI
Sbjct: 664 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIA---HAKQIIKP---FI 717
Query: 605 LRRTSDVQASLLNSKRETLLVCRATPLQQSLYL----RCVEYWDARASRDSHLSVTHALR 660
LRR + LL K++ + +C + Q+ LY R + + +V LR
Sbjct: 718 LRRVKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQLR 777
Query: 661 KICNHPGLVQQ 671
K+ NHP L +Q
Sbjct: 778 KMANHPLLHRQ 788
>DICTYBASE|DDB_G0288873 [details] [associations]
symbol:pich "polo-interacting checkpoint helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0288873 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000125 RefSeq:XP_636560.1
EnsemblProtists:DDB0233442 GeneID:8626845 KEGG:ddi:DDB_G0288873
InParanoid:Q54IB7 OMA:DYGHEEE Uniprot:Q54IB7
Length = 1332
Score = 284 (105.0 bits), Expect = 4.7e-21, P = 4.7e-21
Identities = 74/240 (30%), Positives = 131/240 (54%)
Query: 377 HQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVL 436
+QR GV++L+ C A G IL D+MGLGKT+Q + + ++ QG I L
Sbjct: 396 YQRDGVNWLWNLFCRHA-----GGILGDDMGLGKTMQICSFLNSMHSQGH-----ISHTL 445
Query: 437 IVTPSSLTSNWNDEFKKWLGLTRMCPYHVN---QKNKAEDYVYSRVSPVLIISYEMLIRA 493
+V P L +W EF ++ + +H N ++NK+ V + ++I +Y M++
Sbjct: 446 LVMPVGLIEHWLKEFNRFNPKYLVRVFHGNNTIERNKSLKRVMNE-GGIIITTYGMVVSN 504
Query: 494 YQTIVDTE-----FDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
++++ +D +I DEGH++K K+++ + M N + +I+L+GT +QN+L+E +
Sbjct: 505 VDSMIENGRKSFIWDYVILDEGHKIKETKTQISKTMHRFNAKHKIILTGTAIQNNLRELW 564
Query: 549 YLNDFA-NPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRR 607
L D+ +LGS+R F NF +PI+++ + +S++ QK G + L A LRR
Sbjct: 565 ALFDWVCGSTLLGSVRNFTANFSKPIIKAHTSDSSQDQKITGSAIAEDLRNIIAPHFLRR 624
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 288 (106.4 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21
Identities = 101/313 (32%), Positives = 144/313 (46%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
LKP+Q G+++L L L G ILADEMGLGKT+Q I+ + L ++G +G P
Sbjct: 429 LKPYQLIGLNWLVL----LHQNKLSG-ILADEMGLGKTIQAISFLAHLYQEGNHG-PH-- 480
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPV-LIISYEMLIR 492
LI P+S NW E W ++ Y+ A+D Y R + I+ Y +++
Sbjct: 481 --LITVPASTLDNWVRELNLWCPSFKVLVYY----GSADDRKYMRYEILNQIVEYNIIVS 534
Query: 493 AYQTIVDTEFDL-LIC---------DEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQN 542
Y + D L C DEGH LKN S Y + +N + R+LL+GTPLQN
Sbjct: 535 TYNLAIGNSSDRSLFCKLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQN 594
Query: 543 DLQEFFYLNDFANPGVLGS-LREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTA 601
+L E L +F P + S + K F S S+E Q S R +
Sbjct: 595 NLLELMSLLNFIMPNMFSSSTSQIAKMF--------SMKSSEEQSSFERDRITHAKLIMK 646
Query: 602 GFILRRTSDVQASLLNSKRETLLVCRATPLQQSLY---LRCVEYWDARASRDSHLSVTHA 658
FILRR L +K E + C + QQ LY L +++ + + +V
Sbjct: 647 PFILRRVKSEVLKQLPAKEEQVEFCAMSERQQELYSALLHKLKH-SSNGEKRELTNVMMQ 705
Query: 659 LRKICNHPGLVQQ 671
LRK+ NHP L +Q
Sbjct: 706 LRKMSNHPLLHRQ 718
Score = 42 (19.8 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 303 CKRPLEE-STAETL--QCNQINSHL--SVTHALRKICNHPGLVQQPDVMEEEGQWK 353
C+ L+E + L +C +I+ L VT + K PG + QP+++ Q K
Sbjct: 378 CREVLKEREVVKGLMSKCEEISVKLIQDVTQVMDK---GPGSMTQPEILSSTFQLK 430
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 281 (104.0 bits), Expect = 5.4e-21, P = 5.4e-21
Identities = 96/316 (30%), Positives = 156/316 (49%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIAL-IWTLLRQGPYGMPVI 432
L+P+Q QGV++L + C G IL DEMGLGKT Q IAL I+ R G P
Sbjct: 48 LRPYQLQGVNWLAQ--CFHCQ---NGCILGDEMGLGKTCQTIALFIYLAGRLNDEG-PF- 100
Query: 433 RKVLIVTPSSLTSNWNDEFKKWL-GLTRMCPYHVNQKNKA----EDYVYSRVSPVLIISY 487
LI+ P S+ SNW +E +++ GL+ C + K+K +D VL+ +Y
Sbjct: 101 ---LILCPLSVLSNWKEEMERFAPGLS--CVTYAGDKDKRACLQQDLKQESRFHVLLTTY 155
Query: 488 EMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEF 547
E+ ++ + + +L+ DE HRLKN S L++ ++ ++ +LL+GTP+QN LQE
Sbjct: 156 EICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQEL 215
Query: 548 FYLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRR 607
+ L F P + F K E ++ E++ + S+L K F+LRR
Sbjct: 216 YSLLSFVEPDL------FSKEQVEDFVQRYQDIEKESESA------SELYKLLQPFLLRR 263
Query: 608 TSDVQASLLNSKRETLLVCRATPLQQSLY----LRCVEYWDARASRDSHL-SVTHALRKI 662
A+ L K E ++ + LQ+ Y ++ ++ ++ ++ L +V LRK
Sbjct: 264 VKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNVLSQLRKC 323
Query: 663 CNHPGLVQ--QPDMME 676
+HP L +P+ E
Sbjct: 324 VDHPYLFDGVEPEPFE 339
WARNING: HSPs involving 259 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 680 663 0.00098 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 509
No. of states in DFA: 619 (66 KB)
Total size of DFA: 363 KB (2178 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 59.21u 0.09s 59.30t Elapsed: 00:00:07
Total cpu time: 59.30u 0.10s 59.40t Elapsed: 00:00:07
Start: Thu Aug 15 10:59:16 2013 End: Thu Aug 15 10:59:23 2013
WARNINGS ISSUED: 2