RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12466
(680 letters)
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 182 bits (461), Expect = 8e-53
Identities = 113/278 (40%), Positives = 161/278 (57%), Gaps = 9/278 (3%)
Query: 339 LVQQPDVMEEEGQWKHNPSGKPLVDVTVDGFLSRVLKPHQRQGVSFLYERVCDLASLDLE 398
LV K V V VD LS+VL+PHQR+GV FL++ V +
Sbjct: 21 LVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSY 80
Query: 399 GAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLT 458
G I+ADEMGLGKTLQCI LIWTLL+Q P P I KV++V+PSSL NW +E KWLG
Sbjct: 81 GCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGR 140
Query: 459 RMC-PYHVNQKNKAEDYVYSRVS--------PVLIISYEMLIRAYQTIVDTEFDLLICDE 509
K++ + + + +S P+LIISYE + + + L+ICDE
Sbjct: 141 VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDE 200
Query: 510 GHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFFYLNDFANPGVLGSLREFRKNF 569
GHRLKN ++ Y + +N ++R+L+SGTP+QNDL E+F L F N G+LG+ +EF+K F
Sbjct: 201 GHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRF 260
Query: 570 EEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRR 607
E PIL+ R ++++ ++ GE + +L ++RR
Sbjct: 261 EIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRR 298
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 129 bits (324), Expect = 1e-34
Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 31/245 (12%)
Query: 370 LSRVLKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGM 429
+ L+P+Q +G S++ G LAD+MGLGKTLQ IA+ ++
Sbjct: 9 IKANLRPYQIKGFSWMRFMNKLG-----FGICLADDMGLGKTLQTIAVFSDAKKENELTP 63
Query: 430 PVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH-VNQKNKAEDYVYSRVSPVLIISYE 488
L++ P S+ NW +E K+ R +H K K EDY +++ +Y
Sbjct: 64 S-----LVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDY------DIILTTYA 112
Query: 489 MLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQEFF 548
+L+R + + E+ ++ DE +KN ++K+++ + L + RI L+GTP++N + + +
Sbjct: 113 VLLR-DTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLW 171
Query: 549 YLNDFANPGVLGSLREFRKNFEEPILESRSPNSTEAQKSLGELRSSQLAKRTAGFILRRT 608
+ F NPG+LGS EF+ F PI K + +L + FILRRT
Sbjct: 172 SIMTFLNPGLLGSYSEFKSKFATPI------------KKGDNMAKEELKAIISPFILRRT 219
Query: 609 -SDVQ 612
D
Sbjct: 220 KYDKA 224
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 56.0 bits (134), Expect = 2e-09
Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 31/166 (18%)
Query: 374 LKPHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIR 433
L+ +Q + + L + + G GKT +A I L
Sbjct: 71 LRDYQEKALE---------RWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLI------ 115
Query: 434 KVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA 493
+V +L W + + ++ K P+ + +Y+
Sbjct: 116 ---VVPTLALAEQWKERLGIFGEEYVGEFSGRIKELK----------PLTVSTYDSAYVN 162
Query: 494 YQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTP 539
+ + + F LLI DE H L ++ R+ L+ T
Sbjct: 163 AEKLGN-RFMLLIFDEVHHLPA--ESYVQIAQMSIAPFRLGLTATF 205
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 57.3 bits (137), Expect = 2e-09
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 608 TSDVQASLLNSKRETLLVCRATPLQQSLY------LRCVEYWDARASRDSHLSVTHALRK 661
TSD+ + L K E ++ C TPLQ+ LY + VE S LS +L+K
Sbjct: 1 TSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 60
Query: 662 ICNHPGLVQQPDMMEEEGQ 680
+CNHP L+ + + EEG
Sbjct: 61 LCNHPALIYEKCLTGEEGF 79
Score = 34.5 bits (78), Expect = 0.033
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 322 SHLSVTHALRKICNHPGLVQQPDVMEEEGQ 351
S LS +L+K+CNHP L+ + + EEG
Sbjct: 50 SSLSSITSLKKLCNHPALIYEKCLTGEEGF 79
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 53.0 bits (126), Expect = 4e-08
Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 10/149 (6%)
Query: 406 MGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHV 465
G++L L L + ++IV ++LT+ D+F + + +
Sbjct: 137 TSAGRSLIQALLARYYLENYEG-----KILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191
Query: 466 NQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMT 525
++D Y +PV++ +++ +++ + +F +++ DE H + +++
Sbjct: 192 GG-GASKDDKYKNDAPVVVGTWQTVVKQPKEWFS-QFGMMMNDECHLATG--KSISSIIS 247
Query: 526 GL-NIRKRILLSGTPLQNDLQEFFYLNDF 553
GL N + LSG+ Y+ F
Sbjct: 248 GLNNCMFKFGLSGSLRDGKANIMQYVGMF 276
Score = 32.9 bits (74), Expect = 0.11
Identities = 15/84 (17%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 194 RVLIVTPSSLTSNWNDEFKKWLGLTRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRA 253
++IV ++LT+ D+F + + + ++D Y +PV++ +++ +++
Sbjct: 160 ILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGG-GASKDDKYKNDAPVVVGTWQTVVKQ 218
Query: 254 YQTIVDTEFDLLICDEKSLLKPPS 277
+ +F +++ DE L S
Sbjct: 219 PKEWFS-QFGMMMNDECHLATGKS 241
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 42.5 bits (99), Expect = 2e-05
Identities = 29/145 (20%), Positives = 44/145 (30%), Gaps = 24/145 (16%)
Query: 400 AILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGLT 458
A L G GK+ + A QG KVL++ PS + T + K G+
Sbjct: 11 AHLHAPTGSGKSTKVPAA---YAAQG-------YKVLVLNPSVAATLGFGAYMSKAHGVD 60
Query: 459 RMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLK-NGK 517
V YS L +D++ICDE H
Sbjct: 61 PNIRTGVRTITTGSPITYSTYGKFLADGGCSG---------GAYDIIICDECHSTDATSI 111
Query: 518 SKLYELMTGLNIR---KRILLSGTP 539
+ ++ +L + TP
Sbjct: 112 LGIGTVLDQAETAGARLVVLATATP 136
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 39.3 bits (90), Expect = 3e-04
Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 16/142 (11%)
Query: 401 ILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKVLIVTPSSLTSNWNDEFKKWLGLTRM 460
+L G GKT + + I + V+ T E K+
Sbjct: 11 VLDFHPGAGKTRRFLPQILAECARRRLRTLVLAP---------TRVVLSEMKEA----FH 57
Query: 461 CPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKL 520
+ R + + R + ++++I DE H L
Sbjct: 58 GLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAA 117
Query: 521 YELMTGLNIRKR---ILLSGTP 539
IL++ TP
Sbjct: 118 RGWAAHRARANESATILMTATP 139
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 33.4 bits (75), Expect = 0.080
Identities = 18/146 (12%), Positives = 45/146 (30%), Gaps = 22/146 (15%)
Query: 400 AILADEMGLGKTLQCI-ALIWTLLRQGPYGMPVIRKVLIVTPS-SLTSNWNDEFKKWLGL 457
I+ G GKT + + A++ +++G + LI+ P+ + + + +
Sbjct: 12 TIMDLHPGAGKTKRYLPAIVREAIKRGL-------RTLILAPTRVVAAEMEEALRGLPIR 64
Query: 458 TRMCPYHVNQKNKAEDYVYSRVSPVLIISYEMLIRAYQTIVD-TEFDLLICDEGHRL--- 513
+ + + + + + ++L+I DE H
Sbjct: 65 YQTPAIRAEHTGREIVDLM---------CHATFTMRLLSPIRVPNYNLIIMDEAHFTDPA 115
Query: 514 KNGKSKLYELMTGLNIRKRILLSGTP 539
+ I ++ TP
Sbjct: 116 SIAARGYISTRVEMGEAAGIFMTATP 141
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 32.0 bits (71), Expect = 0.18
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 619 KRETLLVCRATPLQQSLY-------LRCVEYWDARASRDSHLSVTHALRKICNHPGLVQQ 671
K ET + C TP Q ++Y ++ + LS L++I +HP L++
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKG 60
Query: 672 PDMMEE 677
+
Sbjct: 61 GEQSVR 66
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 31.4 bits (70), Expect = 0.26
Identities = 29/204 (14%), Positives = 61/204 (29%), Gaps = 28/204 (13%)
Query: 376 PHQRQGVSFLYERVCDLASLDLEGAILADEMGLGKTLQCIALIWTLLRQGPYGMPVIRKV 435
Q+ + L G+GKT +A+ L +G +
Sbjct: 46 AIQKMWAKRI------LRKESF---AATAPTGVGKTSFGLAMSLFLALKGK-------RC 89
Query: 436 LIVTPSSLTSN-WNDEFKKWLG--------LTRMCPYHVNQKNKAEDYVYSRVSPVLIIS 486
++ P+SL + +K+ L + ++ K R ++I +
Sbjct: 90 YVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITT 149
Query: 487 YEMLIRAYQTIVDTEFDLLICDEGHRLKNGKSKLYELMTGLNIRKRILLSGTPLQNDLQE 546
+ L + Y+ + FD + D+ + + +L+ L + +
Sbjct: 150 TQFLSKHYRELGH--FDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGC- 206
Query: 547 FFYLNDFANPGVLGSLREFRKNFE 570
A G L NF+
Sbjct: 207 LMVSTATAKKGKKAELFRQLLNFD 230
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens)
[TaxId: 9606]}
Length = 187
Score = 27.1 bits (60), Expect = 5.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 544 LQEFFYLNDFANPGVLGSLREFRKNFEEP 572
L F L++F + ++ +LR+F +F P
Sbjct: 65 LHAFVDLHEFTDLNLVQALRQFLWSFRLP 93
>d1a21a1 b.1.2.1 (A:4-106) Extracellular region of human tissue
factor {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 103
Score = 25.7 bits (56), Expect = 9.1
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 190 SYILRVLIVTPSSLTSNWNDEFKKWLGLTRMCPYH 224
+Y+ RVL + + E + PY
Sbjct: 65 TYMARVLSYPARNGNTTGFPEEPPFRNSPEFTPYL 99
>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 110
Score = 25.8 bits (56), Expect = 9.7
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 370 LSRVLKPHQRQGVSFLY-------ERVCDLASLDLEGAILADEMGLGKTLQCIALIWT 420
+V++ ++ Y C +L+ D+ L + C I+
Sbjct: 36 ALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRKAFCSFQIYA 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,444,671
Number of extensions: 112873
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 16
Length of query: 680
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 589
Effective length of database: 1,158,166
Effective search space: 682159774
Effective search space used: 682159774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.0 bits)