BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12482
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 84/130 (64%)
Query: 103 GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR 162
G++ V G + F L+Y + +L +HVK+C LA D ++RS+PYVK YLLPDKS+ GKR
Sbjct: 4 GNIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKR 63
Query: 163 KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD 222
KT +K+ T++P++DE L++++ L RTL SVWH FGRN FLGE + +++ D
Sbjct: 64 KTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLD 123
Query: 223 DPSPKCYPLQ 232
C PL
Sbjct: 124 KKLDHCLPLH 133
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
+ + K YLLPDK R K KT I + + +P ++ T+ Y ++ +VW H R
Sbjct: 46 NPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRF 104
Query: 355 TSNEFLGGIRLNL 367
N FLG + +
Sbjct: 105 GRNTFLGEAEIQM 117
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLK 28
+S+ GKRKT +K+ T++P++DE L+
Sbjct: 57 KSRQGKRKTSIKRDTVNPLYDETLR 81
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 36/296 (12%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G + F L+Y Y L + + Q DL P SDPYVK+YLLPD+ K K +T+V +
Sbjct: 8 GRISFALRYLYGSDQLVVRILQALDL-PAKDSNGFSDPYVKIYLLPDRKK--KFQTKVHR 64
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
TL+P+F+E +F + L +L R L SV+ D F R+D +G+V++ ++ + P +
Sbjct: 65 KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRP 124
Query: 229 Y---PLQERSEILDELICSKGELIIGLKFVPPEDXXXXXXXXXXXXXXXXXHVLIKEAKS 285
L+ SE D GEL L ++P V I +A +
Sbjct: 125 LWRDILEGGSEKAD-----LGELNFSLCYLP---------------TAGLLTVTIIKASN 164
Query: 286 LCPVK-SNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXX 344
L + + D + KA L+ + R K KT I K + +P +N +V+ DV
Sbjct: 165 LKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGL 223
Query: 345 XXTVWDHDRLTSNEFLGGIRLNL----GHGK-HYSKLVDWMDSSGKEILLWQQMME 395
V D+D + NE +G R+ HG+ H++++ + + K + W Q++E
Sbjct: 224 SIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEM---LANPRKPVEHWHQLVE 276
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 9 KRKTRVKKHTLSPVFDEVL 27
KRKT +KK+TL+P ++E L
Sbjct: 191 KRKTSIKKNTLNPTYNEAL 209
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 36/296 (12%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G + F L+Y Y L + + Q DL P SDPYVK+YLLPD+ K K +T+V +
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDL-PAKDSNGFSDPYVKIYLLPDRKK--KFQTKVHR 63
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
TL+P+F+E +F + L +L R L SV+ D F R+D +G+V++ ++ + P +
Sbjct: 64 KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRP 123
Query: 229 Y---PLQERSEILDELICSKGELIIGLKFVPPEDXXXXXXXXXXXXXXXXXHVLIKEAKS 285
L+ SE D GEL L ++P V I +A +
Sbjct: 124 LWRDILEGGSEKAD-----LGELNFSLCYLP---------------TAGLLTVTIIKASN 163
Query: 286 LCPVK-SNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXX 344
L + + D + KA L+ + R K KT I K + +P +N +V+ DV
Sbjct: 164 LKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGL 222
Query: 345 XXTVWDHDRLTSNEFLGGIRLNL----GHGK-HYSKLVDWMDSSGKEILLWQQMME 395
V D+D + NE +G R+ HG+ H++++ + + K + W Q++E
Sbjct: 223 SIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEM---LANPRKPVEHWHQLVE 275
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 9 KRKTRVKKHTLSPVFDEVL 27
KRKT +KK+TL+P ++E L
Sbjct: 190 KRKTSIKKNTLNPTYNEAL 208
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 13/140 (9%)
Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP---------DKS 157
+ GE++ LQ NY G L IH+ Q ++L P D SDP+VKVYLLP + S
Sbjct: 5 ITGEIQ--LQINYDLGNLIIHILQARNLVPRDNN-GYSDPFVKVYLLPGRGQVMVVQNAS 61
Query: 158 KAGKRKTRVKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
KR+T+ + +L+P +++ + ++ +++E L +TL ++VW D F NDFLGEV++ L
Sbjct: 62 AEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
Query: 217 ENKVFDDPSPKCYPLQERSE 236
+ D +P+ YPL+E++E
Sbjct: 122 SSTSHLDNTPRWYPLKEQTE 141
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 280 IKEAKSLCPVKSNTV-DAFCKAYLLPDKGRAS---------KHKTGIIKRSTSPQWNHTV 329
I +A++L P +N D F K YLLP +G+ K +T +++S +P+WN TV
Sbjct: 24 ILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV 83
Query: 330 VYRDVXXXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDW 379
+Y+ + TVWD+DR +SN+FLG + ++L H W
Sbjct: 84 IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRW 133
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 36/290 (12%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G++++ L Y+++ L + + Q +L +D SDPYVKV+LLPDK K K +T+V +
Sbjct: 6 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHR 62
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
TL+PVF+E F++ +L +TL ++V+ D F ++D +GE + + F + +
Sbjct: 63 KTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW 122
Query: 229 YPLQERSEILDELICSKGELIIGLKFVPPEDXXXXXXXXXXXXXXXXXHVLIKEAKSLCP 288
LQ + E + G++ L++VP V+I EAK+L
Sbjct: 123 RDLQSAEKEEQEKL---GDICFSLRYVPTAGKLT---------------VVILEAKNLKK 164
Query: 289 VKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXT 347
+ + D + K +L+ + R K KT I K + +P +N + + +V T
Sbjct: 165 MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF-EVPFEQIQKVQVVVT 223
Query: 348 VWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERP 397
V D+D++ N+ +G ++ +G+ +S+G E+ W M+ P
Sbjct: 224 VLDYDKIGKNDAIG--KVFVGY-----------NSTGAELRHWSDMLANP 260
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G +EF L Y+ L+ + + K L P+D+ +DPYVK++LLP SK+ K +T+ +
Sbjct: 16 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSN-GLADPYVKLHLLPGASKSNKLRTKTLR 74
Query: 169 HTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
+T +PV++E L++ +T ED++ +TL +SV D FG N+F+GE SL+
Sbjct: 75 NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLK 124
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 280 IKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXX 338
I AK L P+ SN + D + K +LLP +++K +T ++ + +P WN T+ Y +
Sbjct: 35 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94
Query: 339 XXXXXXXXTVWDHDRLTSNEFLGGIRLNL 367
+V D D+ NEF+G R +L
Sbjct: 95 MQRKTLRISVCDEDKFGHNEFIGETRFSL 123
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G +EF L Y+ L+ + + K L P+D+ +DPYVK++LLP SK+ K +T+ +
Sbjct: 14 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSN-GLADPYVKLHLLPGASKSNKLRTKTLR 72
Query: 169 HTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
+T +PV++E L++ +T ED++ +TL +SV D FG N+F+GE SL+
Sbjct: 73 NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLK 122
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 280 IKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXX 338
I AK L P+ SN + D + K +LLP +++K +T ++ + +P WN T+ Y +
Sbjct: 33 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 92
Query: 339 XXXXXXXXTVWDHDRLTSNEFLGGIRLNL 367
+V D D+ NEF+G R +L
Sbjct: 93 MQRKTLRISVCDEDKFGHNEFIGETRFSL 121
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G+++ ++++ ++ L + V C++L + SDPYV++YLLPDK ++G+RKT V K
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNL--IAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSK 68
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND--FLGEVMMSLENKVFDDPSP 226
TL+PVFD+ F ++L +++ RTL ++V +S F D LG+V+++L ++
Sbjct: 69 KTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWT 128
Query: 227 KCYPLQERS 235
+ Y L E S
Sbjct: 129 QWYDLTEDS 137
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 278 VLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
V++ ++L + D + + YLLPDK R+ + KT + K++ +P ++ +
Sbjct: 28 VVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQS 78
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNK 60
+ ++G+RKT V K TL+PVFD+ DFSVS + ++ + D +S L+K
Sbjct: 56 KRRSGRRKTHVSKKTLNPVFDQSF------DFSVSLPEVQRRTLDVAVKNSGGFLSK 106
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 101 RYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG 160
R G + +G++ L Y+ +QG L + + +C LA +D SDP+VK++L PD K
Sbjct: 16 RIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDA-NGYSDPFVKLWLKPDMGKKA 74
Query: 161 KRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219
K KT++KK TL+P F+E + + DL ++L +SVW D+ ND++G + + K
Sbjct: 75 KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
D F K +L PD G+ +KHKT I K++ +P++N Y D+ +VWD+D
Sbjct: 59 DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIG 117
Query: 355 TSNEFLGGIRLNL-GHGKHYSKLVDWMDSSGKEILLWQQM 393
SN+++GG +L + G+ + + + K+I W Q+
Sbjct: 118 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 157
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 101 RYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG 160
R G + +G++ L Y+ +QG L + + +C LA D SDP+VK++L PD K
Sbjct: 16 RIGDIEERGKILVSLXYSTQQGGLIVGIIRCVHLAAXDA-NGYSDPFVKLWLKPDXGKKA 74
Query: 161 KRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219
K KT++KK TL+P F+E + + DL ++L +SVW D+ ND++G + + K
Sbjct: 75 KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
D F K +L PD G+ +KHKT I K++ +P++N Y D+ +VWD+D
Sbjct: 59 DPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIG 117
Query: 355 TSNEFLGGIRLNL-GHGKHYSKLVDWMDSSGKEILLWQQMM 394
SN+++GG +L + G+ + + + K+I W Q+
Sbjct: 118 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ 158
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
+G++ L Y+ +QG L + + +C LA +D SDP+VK++L PD K K KT++K
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDA-NGYSDPFVKLWLKPDMGKKAKHKTQIK 59
Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219
K TL+P F+E + + DL ++L +SVW D+ ND++G + + K
Sbjct: 60 KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 111
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
D F K +L PD G+ +KHKT I K++ +P++N Y D+ +VWD+D
Sbjct: 37 DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIG 95
Query: 355 TSNEFLGGIRLNL-GHGKHYSKLVDWMDSSGKEILLWQQM 393
SN+++GG +L + G+ + + + K+I W Q+
Sbjct: 96 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 135
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G++++ L Y+++ L + + Q +L +D SDPYVKV+LLPDK K K +T+V +
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHR 77
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF 221
TL+PVF+E F++ +L +TL ++V+ D F ++D +GE + + F
Sbjct: 78 KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHD 352
T D + K +LLPDK + K +T + +++ +P +N ++ V V+D D
Sbjct: 54 TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFD 110
Query: 353 RLTSNEFLGGIR-----LNLGH 369
R + ++ +G + ++ GH
Sbjct: 111 RFSKHDIIGEFKVPMNTVDFGH 132
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G++++ L Y+++ L + + Q +L +D SDPYVKV+LLPDK K K +T+V +
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHR 77
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF 221
TL+PVF+E F++ +L +TL ++V+ D F ++D +GE + + F
Sbjct: 78 KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHD 352
T D + K +LLPDK + K +T + +++ +P +N ++ V V+D D
Sbjct: 54 TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFD 110
Query: 353 RLTSNEFLGGIR-----LNLGH 369
R + ++ +G + ++ GH
Sbjct: 111 RFSKHDIIGEFKVPMNTVDFGH 132
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G++++ L Y+++ L + + Q +L +D SDPYVKV+LLPDK K K +T+V +
Sbjct: 29 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHR 85
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGE 211
TL+PVF+E F++ +L +TL ++V+ D F ++D +GE
Sbjct: 86 KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE 128
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHD 352
T D + K +LLPDK + K +T + +++ +P +N ++ V V+D D
Sbjct: 62 TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFD 118
Query: 353 RLTSNEFLGGIR-----LNLGH 369
R + ++ +G + ++ GH
Sbjct: 119 RFSKHDIIGEFKVPMNTVDFGH 140
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G++++ L Y+++ L + + Q +L +D SDPYVKV+LLPDK K K +T+V +
Sbjct: 4 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHR 60
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
TL+PVF+E F++ +L +TL ++V+ D F ++D +GE + +
Sbjct: 61 KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 108
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHD 352
T D + K +LLPDK + K +T + +++ +P +N ++ V V+D D
Sbjct: 37 TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFD 93
Query: 353 RLTSNEFLGGIR-----LNLGH 369
R + ++ +G + ++ GH
Sbjct: 94 RFSKHDIIGEFKVPMNTVDFGH 115
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 73.9 bits (180), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 113 FGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLS 172
F L+YN+++ A +++K+ + L +D + SDPY+K+ +LP+K K KTRV + TL
Sbjct: 13 FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRVLRKTLD 70
Query: 173 PVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
P FDE F + ++ L ++ D F R+D +GEV++ L
Sbjct: 71 PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G ++F + YN+++ L + + + ++L P SDP+VK+YLLPDK K +T+VK+
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQEL-PAKDFSGTSDPFVKIYLLPDKKH--KLETKVKR 69
Query: 169 HTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKV 220
L+P ++E F+ E + R L+L V D F RND +GEV + L NKV
Sbjct: 70 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL-NKV 121
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 278 VLIKEAKSLCPVK--SNTVDAFCKAYLLPDKGRASKHK--TGIIKRSTSPQWNHTVVYRD 333
V I +A+ L P K S T D F K YLLPDK KHK T + +++ +P WN T ++
Sbjct: 30 VKIMKAQEL-PAKDFSGTSDPFVKIYLLPDK----KHKLETKVKRKNLNPHWNETFLFEG 84
Query: 334 VXXXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLG 368
V D+DR + N+ +G + + L
Sbjct: 85 FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLN 119
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
L +Y+ G L I V KDL D +PYVK YLLPD K KRKT++ + T +P
Sbjct: 13 LSVSYRNGTLFIMVMHIKDLVTEDG--ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPT 70
Query: 175 FDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL 231
F+E+L + + E L R L LSV ++ N FLG + + L++ + K Y L
Sbjct: 71 FNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQL 128
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%)
Query: 278 VLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXX 337
+++ K L + + K YLLPD + SK KT I +++ +P +N +VY
Sbjct: 24 IMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83
Query: 338 XXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEIL 388
+V + L N FLGGI L L + V W + L
Sbjct: 84 TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL 134
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 6 KAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHS 54
K KRKT++ + T +P F+E+L +G +S + + ++ LSA S
Sbjct: 54 KTSKRKTKISRKTRNPTFNEMLVYSG---YSKETLRQRELQLSVLSAES 99
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 123 ALEIHVK--QCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
A EIHV + ++L P+D SDPYVK+ L+PD K+KTR K TL+PV++E
Sbjct: 19 ADEIHVTVGEARNLIPMDPN-GLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFV 77
Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLG 210
F L D+E R L + VW D RNDF+G
Sbjct: 78 FNLKPGDVE-RRLSVEVWDWDRTSRNDFMG 106
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 277 HVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVX 335
HV + EA++L P+ N + D + K L+PD +K KT +K + +P WN T V+
Sbjct: 23 HVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFN--L 80
Query: 336 XXXXXXXXXXXTVWDHDRLTSNEFLGGI 363
VWD DR + N+F+G +
Sbjct: 81 KPGDVERRLSVEVWDWDRTSRNDFMGAM 108
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
+Q + + L + V+ K+L P+D SDPYVK+ L+PD K+KT+ K +L+P
Sbjct: 165 IQAHIDREVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPE 223
Query: 175 FDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
++E +FQL D + R L + +W D+ RNDF+G + +
Sbjct: 224 WNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGI 264
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 278 VLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXX 336
V++++AK+L P+ N + D + K L+PD SK KT IK S +P+WN T +R
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNET--FRFQLK 233
Query: 337 XXXXXXXXXXTVWDHDRLTSNEFLGGIRLNL 367
+WD D + N+F+G + +
Sbjct: 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI 264
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
+Q + + L + V+ K+L P+D SDPYVK+ L+PD K+KT+ K +L+P
Sbjct: 24 IQAHIDREVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPE 82
Query: 175 FDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
++E +FQL D + R L + +W D+ RNDF+G + +
Sbjct: 83 WNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGI 123
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 278 VLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXX 336
V++++AK+L P+ N + D + K L+PD SK KT IK S +P+WN T +R
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET--FRFQLK 92
Query: 337 XXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGH 369
+WD D + N+F+G + +
Sbjct: 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 125
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPV---DTKRQ---RSDPYVKVYLLPDKSKAGKR 162
G + F QY+ L + V + +DL P D RQ S+PYVK+ LLPD+ + +
Sbjct: 13 GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNS--K 70
Query: 163 KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
+T VK+ T PVF+E F++ + + RTL L+V D F R+ +G+V + L
Sbjct: 71 QTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 103 GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR 162
G + +K EV L + V+ K+L P+D SDPYVK+ L+PD K+
Sbjct: 5 GRIYLKAEV--------TDEKLHVTVRDAKNLIPMDPN-GLSDPYVKLKLIPDPKNESKQ 55
Query: 163 KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEV 212
KT+ + TL+P ++E F+L D + R L + +W D RNDF+G +
Sbjct: 56 KTKTIRSTLNPQWNESFTFKLKPSDKD-RRLSVEIWDWDRTTRNDFMGSL 104
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 277 HVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVX 335
HV +++AK+L P+ N + D + K L+PD SK KT I+ + +PQWN + ++
Sbjct: 19 HVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK--L 76
Query: 336 XXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGH 369
+WD DR T N+F+G + +
Sbjct: 77 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSE 110
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 103 GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR 162
G + +K EV L + V+ K+L P+D SDPYVK+ L+PD K+
Sbjct: 6 GRIYLKAEV--------TDEKLHVTVRDAKNLIPMDPN-GLSDPYVKLKLIPDPKNESKQ 56
Query: 163 KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD 222
KT+ + TL+P ++E F+L D + R L + +W D RNDF+G + + +++
Sbjct: 57 KTKTIRSTLNPQWNESFTFKLKPSDKD-RRLSVEIWDWDRTTRNDFMGSLSFGV-SELMK 114
Query: 223 DPSPKCYPLQERSE 236
P+ Y L + E
Sbjct: 115 MPASGWYKLLNQEE 128
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 277 HVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVX 335
HV +++AK+L P+ N + D + K L+PD SK KT I+ + +PQWN + ++
Sbjct: 20 HVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK--L 77
Query: 336 XXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNL 367
+WD DR T N+F+G + +
Sbjct: 78 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGV 109
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTR 165
+ G++ L ++ L + + KDL + R R +PYVK+Y LPD+S KR+T+
Sbjct: 2 FLSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPR-NPYVKIYFLPDRSDKNKRRTK 60
Query: 166 VKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMF--GRNDFLGEVMMSLENKVFD 222
K TL P +++ + + + R L +++W ++FLGE+++ LE + D
Sbjct: 61 TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 120
Query: 223 DPSPKCYPLQ 232
D P Y LQ
Sbjct: 121 D-EPHWYKLQ 129
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
+ + K Y LPD+ +K +T +K++ P+WN T +Y V T+WD R+
Sbjct: 40 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 99
Query: 355 --TSNEFLGGIRLNL 367
+EFLG I + L
Sbjct: 100 REEESEFLGEILIEL 114
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
L + V+ K+L P D SDPYVK+ L+PD K+KT+ + TL+P ++E F+L
Sbjct: 20 LHVTVRDAKNLIPXDPN-GLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSE 236
D + R L + +W D RNDF G + + +++ P+ Y L + E
Sbjct: 79 KPSDKD-RRLSVEIWDWDRTTRNDFXGSLSFGV-SELXKXPASGWYKLLNQEE 129
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 277 HVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVX 335
HV +++AK+L P N + D + K L+PD SK KT I+ + +PQWN + ++
Sbjct: 21 HVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK--L 78
Query: 336 XXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNL 367
+WD DR T N+F G + +
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGV 110
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 131 CKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLEDLE 189
KDL + R R +PYVK+Y LPD+S KR+T+ K TL P +++ + + +
Sbjct: 30 AKDLPSREDGRPR-NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR 88
Query: 190 CRTLWLSVWHSDMF--GRNDFLGEVMMSLENKVFDDPSPKCYPLQ 232
R L +++W ++FLGE+++ LE + DD P Y LQ
Sbjct: 89 ERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 132
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
+ + K Y LPD+ +K +T +K++ P+WN T +Y V T+WD R+
Sbjct: 43 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 102
Query: 355 --TSNEFLGGIRLNL 367
+EFLG I + L
Sbjct: 103 REEESEFLGEILIEL 117
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
+GE+ L YN ++ +++ + ++L +D SDPYVKV+L+ + K+KT K
Sbjct: 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIG-GTSDPYVKVWLMYKDKRVEKKKTVTK 60
Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
K L+P+F+E F + E L T+ ++V D RND +G++ +S
Sbjct: 61 KRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 108
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
+GE+ L Y L + V + + L D SDPYVKV L K + K+KT VK
Sbjct: 16 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVS-GLSDPYVKVNLYHAKKRISKKKTHVK 74
Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMM 214
K T + VF+E+ F + E LE ++ V S+ RN+ +G +++
Sbjct: 75 KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G+++ G + K+G LE+ V + + L + PYVKVYLL + + K+KTR+ +
Sbjct: 19 GDIQIGXED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR 76
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND---FLGEVMMSLEN 218
TL P++ + L F E + + L + VW +GR D F G + LE
Sbjct: 77 KTLDPLYQQSLVFD---ESPQGKVLQVIVWGD--YGRXDHKCFXGVAQILLEE 124
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 95 SGAGEGRYGSVIVK-GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLL 153
SG G G ++ K G++ F L+Y G L + + + K+L +D SDPYVK++L+
Sbjct: 1 SGGG----GGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVG-GLSDPYVKIHLM 55
Query: 154 PDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVM 213
+ + K+KT +KK+TL+P ++E F++ E ++ + ++V D G+ND +G+V
Sbjct: 56 QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 115
Query: 214 MS 215
+
Sbjct: 116 VG 117
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G++ F L+Y G L + + + K+L +D SDPYVK++L+ + + K+KT +KK
Sbjct: 4 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTIKK 62
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
+TL+P ++E F++ E ++ + ++V D G+ND +G+V +
Sbjct: 63 NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 109
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G++ F L+Y G L + + + K+L +D SDPYVK++L+ + + K+KT +KK
Sbjct: 5 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGG-LSDPYVKIHLMQNGKRLKKKKTTIKK 63
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
+TL+P ++E F++ E ++ + ++V D G+ND +G+V +
Sbjct: 64 NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 110
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 95 SGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKV--YL 152
+G GE YG +GE L + V DLA D SDPYVK+ Y+
Sbjct: 4 TGLGEPVYGLSEDEGESRI----------LRVKVVSGIDLAKKDI-FGASDPYVKLSLYV 52
Query: 153 LPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEV 212
+ + +T+ K TL+P ++E F++ + L V+ + R+DFLG+V
Sbjct: 53 ADENRELALVQTKTIKKTLNPKWNEEFYFRVNPSN---HRLLFEVFDENRLTRDDFLGQV 109
Query: 213 MMSLENKVFDDPS 225
+ L + +DP+
Sbjct: 110 DVPLSHLPTEDPT 122
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 313 KTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGH 369
+T IK++ +P+WN +R V+D +RLT ++FLG + + L H
Sbjct: 63 QTKTIKKTLNPKWNEEFYFR----VNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSH 115
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
V+G + L + + L +H+ + K L + + DPYVK+ L+P+ S+ +KT+
Sbjct: 12 VQGAGQLRLSIDAQDRVLLLHIIEGKGL--ISKQPGTCDPYVKISLIPEDSRLRHQKTQT 69
Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWH 199
P F E F + ED + R L ++VW+
Sbjct: 70 VPDCRDPAFHEHFFFPVQEEDDQKRLL-VTVWN 101
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 295 DAFCKAYLL-PDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDR 353
D + + L P G + +T IK+S +P+WN +++R V+D +R
Sbjct: 42 DPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR----VHPQQHRLLFEVFDENR 97
Query: 354 LTSNEFLGGIRLNL 367
LT ++FLG + + L
Sbjct: 98 LTRDDFLGQVDVPL 111
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 295 DAFCKAYLL-PDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDR 353
D + + L P G + +T IK+S +P+WN +++R V+D +R
Sbjct: 30 DPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR----VLPQRHRILFEVFDENR 85
Query: 354 LTSNEFLGGIRLNL 367
LT ++FLG + + L
Sbjct: 86 LTRDDFLGQVDVPL 99
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
G L +HV + +L +S+PY ++ + + TR + TL+P ++
Sbjct: 387 GRLMVHVIEATELKACKPN-GKSNPYCEISM-----GSQSYTTRTIQDTLNPKWN--FNC 438
Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLG 210
Q ++DL L L+++ D F +DFLG
Sbjct: 439 QFFIKDLYQDVLCLTLFDRDQFSPDDFLG 467
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 5 SKAGKRKTRVKKHTLSPVFDEVLKTAG 31
KAG +KT +K H +SP D+ T G
Sbjct: 74 GKAGAQKTSIKHHAVSPAADQAFHTYG 100
>pdb|2OLS|A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase
From Neisseria Meningitidis
Length = 794
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 37/181 (20%)
Query: 19 LSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPH- 77
+ +++++ AG D SV+ + A+ +DL S AG ++ +I D+V E + H
Sbjct: 104 IEAAWNKMVADAGGADISVAVRS--SATAEDLPDASFAGQQETFLNINGLDNVKEAMHHV 161
Query: 78 -------------------HNKSLLGA------RSDSMAS--VYSGAGEGRYGSVIVKGE 110
H+ L A RSDS AS +++ E Y V+
Sbjct: 162 FASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTS 221
Query: 111 VEFGLQYNYKQGAL---EIHVKQ--CKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTR 165
+GL N QGA+ E +V + K P ++ ++K+ + DK++AGK T
Sbjct: 222 -SYGLGENVVQGAVNPDEFYVFKPTLKAGKPAILRKTMGSKHIKM-IFTDKAEAGKSVTN 279
Query: 166 V 166
V
Sbjct: 280 V 280
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
G L + V+ ++ TK + DP V V K K+KT+ + L+PV++E+L+F
Sbjct: 7 GMLRVIVESASNIP--KTKFGKPDPIVSVIF-----KDEKKKTKKVDNELNPVWNEILEF 59
Query: 182 QLTLEDLE-CRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD 222
L L+ +L + V + G+N +G ++L++ D
Sbjct: 60 DLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGD 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,873,957
Number of Sequences: 62578
Number of extensions: 465332
Number of successful extensions: 1284
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 99
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)