Query psy12482
Match_columns 419
No_of_seqs 312 out of 3151
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 20:29:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028|consensus 100.0 3.6E-51 7.9E-56 391.8 29.5 272 104-410 149-421 (421)
2 cd08407 C2B_Synaptotagmin-13 C 100.0 1.2E-33 2.5E-38 229.6 15.1 134 246-408 2-138 (138)
3 cd08692 C2B_Tac2-N C2 domain s 100.0 2.2E-32 4.9E-37 218.3 15.4 133 246-407 1-135 (135)
4 cd08406 C2B_Synaptotagmin-12 C 100.0 3.3E-32 7.1E-37 221.5 15.7 134 246-408 2-136 (136)
5 KOG1028|consensus 100.0 1.9E-32 4.1E-37 262.8 12.5 207 5-232 199-405 (421)
6 cd04020 C2B_SLP_1-2-3-4 C2 dom 100.0 6.2E-30 1.3E-34 215.0 17.7 161 245-408 1-162 (162)
7 cd08409 C2B_Synaptotagmin-15 C 100.0 3.2E-30 6.9E-35 211.4 15.5 136 245-407 1-136 (137)
8 cd08408 C2B_Synaptotagmin-14_1 100.0 3.7E-29 8E-34 204.7 15.5 133 246-407 2-137 (138)
9 cd08410 C2B_Synaptotagmin-17 C 100.0 7.3E-29 1.6E-33 203.1 15.9 134 246-407 1-135 (135)
10 cd08402 C2B_Synaptotagmin-1 C2 100.0 1.1E-28 2.4E-33 202.9 16.1 135 245-408 1-136 (136)
11 cd08405 C2B_Synaptotagmin-7 C2 100.0 2.7E-28 5.8E-33 200.6 15.2 135 245-408 1-136 (136)
12 cd08677 C2A_Synaptotagmin-13 C 100.0 2.3E-28 4.9E-33 190.6 13.6 118 109-231 1-118 (118)
13 cd08384 C2B_Rabphilin_Doc2 C2 100.0 7.5E-28 1.6E-32 197.3 14.8 132 247-407 1-133 (133)
14 cd08403 C2B_Synaptotagmin-3-5- 100.0 1.1E-27 2.3E-32 196.4 15.7 133 246-407 1-134 (134)
15 COG5038 Ca2+-dependent lipid-b 100.0 1.1E-26 2.4E-31 234.1 23.0 244 119-377 708-1137(1227)
16 KOG1013|consensus 100.0 2.8E-29 6.2E-34 220.9 3.8 276 106-411 77-357 (362)
17 cd08404 C2B_Synaptotagmin-4 C2 100.0 3.5E-27 7.6E-32 193.8 16.0 134 245-407 1-135 (136)
18 cd08393 C2A_SLP-1_2 C2 domain 99.9 6.5E-27 1.4E-31 188.9 15.4 125 108-232 1-125 (125)
19 cd04029 C2A_SLP-4_5 C2 domain 99.9 1.2E-26 2.6E-31 187.0 15.4 124 109-232 2-125 (125)
20 cd08677 C2A_Synaptotagmin-13 C 99.9 8.6E-27 1.9E-31 181.7 12.5 118 246-393 1-118 (118)
21 cd08680 C2_Kibra C2 domain fou 99.9 2.1E-26 4.6E-31 184.0 14.2 121 110-231 2-124 (124)
22 cd08392 C2A_SLP-3 C2 domain fi 99.9 3.5E-26 7.6E-31 184.5 15.2 125 108-232 1-128 (128)
23 cd08407 C2B_Synaptotagmin-13 C 99.9 2.3E-26 5E-31 186.8 14.0 124 108-233 1-125 (138)
24 cd08381 C2B_PI3K_class_II C2 d 99.9 5.8E-26 1.3E-30 182.2 15.2 119 109-231 2-121 (122)
25 cd04028 C2B_RIM1alpha C2 domai 99.9 1.5E-25 3.3E-30 183.2 15.6 125 108-237 17-142 (146)
26 cd00276 C2B_Synaptotagmin C2 d 99.9 1.3E-25 2.9E-30 184.5 15.4 133 246-407 1-134 (134)
27 cd08406 C2B_Synaptotagmin-12 C 99.9 1.3E-25 2.8E-30 182.8 14.4 124 108-234 1-124 (136)
28 KOG2059|consensus 99.9 1.8E-25 3.8E-30 214.2 13.5 220 122-369 5-238 (800)
29 cd08692 C2B_Tac2-N C2 domain s 99.9 6.5E-25 1.4E-29 175.4 14.0 122 109-233 1-123 (135)
30 cd08389 C2A_Synaptotagmin-14_1 99.9 7.8E-25 1.7E-29 176.3 14.1 122 108-233 2-124 (124)
31 cd08387 C2A_Synaptotagmin-8 C2 99.9 1.9E-24 4.1E-29 174.8 14.7 122 108-232 2-123 (124)
32 cd08393 C2A_SLP-1_2 C2 domain 99.9 1.6E-24 3.5E-29 174.9 13.9 121 245-381 1-123 (125)
33 cd08388 C2A_Synaptotagmin-4-11 99.9 2.3E-24 5.1E-29 174.5 14.7 124 108-233 2-128 (128)
34 cd04029 C2A_SLP-4_5 C2 domain 99.9 2.7E-24 5.8E-29 173.4 14.1 121 245-381 1-123 (125)
35 cd08680 C2_Kibra C2 domain fou 99.9 1.1E-24 2.3E-29 174.3 11.6 108 247-370 2-111 (124)
36 cd04030 C2C_KIAA1228 C2 domain 99.9 5.7E-24 1.2E-28 172.9 15.8 124 108-232 2-127 (127)
37 cd08521 C2A_SLP C2 domain firs 99.9 5.5E-24 1.2E-28 172.1 15.1 122 109-231 1-123 (123)
38 cd08385 C2A_Synaptotagmin-1-5- 99.9 6.3E-24 1.4E-28 171.8 15.3 122 108-232 2-123 (124)
39 cd08381 C2B_PI3K_class_II C2 d 99.9 4.5E-24 9.8E-29 171.3 13.8 118 246-381 2-120 (122)
40 cd08685 C2_RGS-like C2 domain 99.9 8.5E-24 1.8E-28 168.6 13.8 118 109-231 1-119 (119)
41 cd08392 C2A_SLP-3 C2 domain fi 99.9 1.2E-23 2.7E-28 169.7 14.2 109 246-370 2-112 (128)
42 cd04031 C2A_RIM1alpha C2 domai 99.9 2.1E-23 4.5E-28 169.2 15.2 123 108-232 2-125 (125)
43 cd08409 C2B_Synaptotagmin-15 C 99.9 3.7E-24 8.1E-29 175.4 10.7 125 108-234 1-125 (137)
44 cd08408 C2B_Synaptotagmin-14_1 99.9 5.8E-24 1.3E-28 174.0 11.0 123 109-233 2-125 (138)
45 cd04028 C2B_RIM1alpha C2 domai 99.9 3.3E-23 7.1E-28 169.5 14.9 128 243-416 15-145 (146)
46 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 4.2E-23 9.2E-28 173.5 14.7 125 108-233 1-138 (162)
47 cd08386 C2A_Synaptotagmin-7 C2 99.9 4.5E-23 9.7E-28 167.1 14.3 123 108-233 2-125 (125)
48 cd08390 C2A_Synaptotagmin-15-1 99.9 5.2E-23 1.1E-27 166.3 14.3 122 109-233 1-123 (123)
49 cd08404 C2B_Synaptotagmin-4 C2 99.9 3E-23 6.5E-28 170.4 12.1 124 108-234 1-124 (136)
50 cd08388 C2A_Synaptotagmin-4-11 99.9 1.3E-22 2.8E-27 164.3 14.8 109 245-370 2-112 (128)
51 cd08410 C2B_Synaptotagmin-17 C 99.9 3.7E-23 8E-28 169.3 11.7 124 109-234 1-124 (135)
52 cd08402 C2B_Synaptotagmin-1 C2 99.9 5.6E-23 1.2E-27 168.9 11.8 124 108-234 1-124 (136)
53 cd08405 C2B_Synaptotagmin-7 C2 99.9 6E-23 1.3E-27 168.7 11.8 124 108-234 1-124 (136)
54 cd08387 C2A_Synaptotagmin-8 C2 99.9 2.3E-22 5E-27 162.6 13.8 119 245-381 2-121 (124)
55 cd08403 C2B_Synaptotagmin-3-5- 99.9 1.1E-22 2.5E-27 166.6 12.0 123 109-234 1-123 (134)
56 cd04030 C2C_KIAA1228 C2 domain 99.9 3.3E-22 7.2E-27 162.5 14.1 121 245-381 2-125 (127)
57 cd04016 C2_Tollip C2 domain pr 99.9 3.2E-22 7E-27 158.9 13.6 118 122-254 2-121 (121)
58 cd08384 C2B_Rabphilin_Doc2 C2 99.9 1.5E-22 3.3E-27 165.8 12.0 122 110-234 1-122 (133)
59 cd08389 C2A_Synaptotagmin-14_1 99.9 4.2E-22 9.2E-27 160.4 13.5 119 245-381 2-121 (124)
60 cd08521 C2A_SLP C2 domain firs 99.9 6.3E-22 1.4E-26 160.0 13.9 119 246-380 1-121 (123)
61 cd08385 C2A_Synaptotagmin-1-5- 99.9 7.7E-22 1.7E-26 159.6 14.1 108 245-370 2-110 (124)
62 cd04010 C2B_RasA3 C2 domain se 99.9 6.1E-22 1.3E-26 163.1 13.1 127 123-252 1-147 (148)
63 cd04031 C2A_RIM1alpha C2 domai 99.9 7.6E-22 1.6E-26 160.0 13.5 110 245-369 2-112 (125)
64 cd08395 C2C_Munc13 C2 domain t 99.9 4.9E-22 1.1E-26 157.4 11.8 112 123-236 1-115 (120)
65 cd08682 C2_Rab11-FIP_classI C2 99.9 5.8E-22 1.3E-26 160.6 12.6 120 124-252 1-125 (126)
66 cd08685 C2_RGS-like C2 domain 99.9 4.6E-22 1E-26 158.6 11.8 107 246-371 1-108 (119)
67 cd08386 C2A_Synaptotagmin-7 C2 99.9 2.8E-21 6.1E-26 156.6 13.7 119 245-380 2-121 (125)
68 cd00276 C2B_Synaptotagmin C2 d 99.9 1.3E-21 2.8E-26 160.7 11.6 124 109-235 1-124 (134)
69 cd04022 C2A_MCTP_PRT_plant C2 99.9 5.5E-21 1.2E-25 155.1 12.1 123 123-255 1-126 (127)
70 cd04035 C2A_Rabphilin_Doc2 C2 99.9 1.3E-20 2.8E-25 152.1 14.1 121 108-230 1-122 (123)
71 cd08395 C2C_Munc13 C2 domain t 99.9 6E-21 1.3E-25 151.2 11.1 106 275-381 1-109 (120)
72 cd08390 C2A_Synaptotagmin-15-1 99.8 1.7E-20 3.6E-25 151.6 13.5 118 246-381 1-120 (123)
73 cd04009 C2B_Munc13-like C2 dom 99.8 2.6E-20 5.7E-25 152.2 14.3 112 108-220 2-117 (133)
74 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.8E-20 3.9E-25 150.8 12.7 121 123-256 1-121 (121)
75 cd08681 C2_fungal_Inn1p-like C 99.8 2.1E-20 4.5E-25 149.8 12.8 117 122-254 1-118 (118)
76 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1.8E-20 3.9E-25 151.3 12.5 122 123-252 1-122 (123)
77 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.9E-20 6.3E-25 148.9 12.8 120 124-254 2-121 (121)
78 cd04019 C2C_MCTP_PRT_plant C2 99.8 9.6E-20 2.1E-24 151.0 14.2 126 124-257 2-134 (150)
79 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.1E-19 2.3E-24 147.0 13.9 122 122-257 4-125 (126)
80 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 9.2E-20 2E-24 149.4 13.4 124 124-255 2-133 (133)
81 cd04026 C2_PKC_alpha_gamma C2 99.8 1.4E-19 3E-24 147.8 14.3 123 108-235 1-123 (131)
82 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.1E-19 2.3E-24 145.3 13.3 115 123-255 1-115 (116)
83 COG5038 Ca2+-dependent lipid-b 99.8 3.5E-19 7.5E-24 180.4 19.9 237 120-372 434-802 (1227)
84 cd04035 C2A_Rabphilin_Doc2 C2 99.8 1.8E-19 4E-24 145.4 14.4 113 245-373 1-114 (123)
85 cd04036 C2_cPLA2 C2 domain pre 99.8 1.3E-19 2.7E-24 145.4 13.2 116 124-254 2-117 (119)
86 cd04009 C2B_Munc13-like C2 dom 99.8 1.1E-19 2.3E-24 148.6 12.3 111 245-371 2-117 (133)
87 KOG1328|consensus 99.8 5.8E-21 1.3E-25 183.3 5.0 98 273-371 946-1048(1103)
88 cd08678 C2_C21orf25-like C2 do 99.8 1.6E-19 3.5E-24 146.2 12.6 122 124-257 1-122 (126)
89 cd04024 C2A_Synaptotagmin-like 99.8 1.8E-19 3.8E-24 146.7 12.7 123 122-254 1-128 (128)
90 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.3E-19 2.9E-24 144.8 11.6 115 124-250 2-125 (126)
91 cd08375 C2_Intersectin C2 doma 99.8 2.3E-19 4.9E-24 146.6 13.1 119 119-254 12-135 (136)
92 KOG0696|consensus 99.8 2.5E-20 5.4E-25 170.0 7.7 111 242-371 165-276 (683)
93 KOG0696|consensus 99.8 3.5E-20 7.5E-25 169.1 7.9 123 106-233 166-288 (683)
94 cd08682 C2_Rab11-FIP_classI C2 99.8 1.8E-19 4E-24 145.9 11.4 88 276-369 1-92 (126)
95 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.7E-19 7.9E-24 142.6 12.9 113 124-254 2-119 (121)
96 cd08688 C2_KIAA0528-like C2 do 99.8 1.9E-19 4.2E-24 142.0 10.7 105 124-233 1-109 (110)
97 cd04010 C2B_RasA3 C2 domain se 99.8 2.6E-19 5.6E-24 147.6 10.8 95 275-371 1-108 (148)
98 KOG2059|consensus 99.8 8.8E-20 1.9E-24 175.4 9.1 223 9-257 39-278 (800)
99 cd08690 C2_Freud-1 C2 domain f 99.8 1.6E-18 3.4E-23 142.9 14.8 127 124-257 4-139 (155)
100 cd04016 C2_Tollip C2 domain pr 99.8 3E-19 6.6E-24 141.8 9.5 87 274-369 2-89 (121)
101 cd04041 C2A_fungal C2 domain f 99.8 5.5E-19 1.2E-23 139.6 10.9 107 122-233 1-108 (111)
102 KOG1013|consensus 99.8 1.2E-19 2.5E-24 160.5 7.5 206 1-218 123-328 (362)
103 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.3E-18 2.9E-23 140.1 12.9 116 122-254 1-121 (121)
104 cd04026 C2_PKC_alpha_gamma C2 99.8 2E-18 4.4E-23 140.9 13.6 107 245-370 1-108 (131)
105 cd04017 C2D_Ferlin C2 domain f 99.8 2E-18 4.3E-23 141.5 13.2 122 123-257 2-134 (135)
106 cd08373 C2A_Ferlin C2 domain f 99.8 2.1E-18 4.5E-23 140.0 12.9 119 128-259 2-120 (127)
107 cd08688 C2_KIAA0528-like C2 do 99.8 1.3E-18 2.8E-23 137.2 11.0 88 276-369 1-91 (110)
108 cd08377 C2C_MCTP_PRT C2 domain 99.8 3.7E-18 8E-23 137.0 13.7 118 122-254 1-118 (119)
109 cd04044 C2A_Tricalbin-like C2 99.8 3E-18 6.4E-23 138.7 12.9 122 122-256 2-124 (124)
110 cd04015 C2_plant_PLD C2 domain 99.8 4.5E-18 9.7E-23 142.6 13.8 124 121-255 6-158 (158)
111 cd04043 C2_Munc13_fungal C2 do 99.8 7.1E-18 1.5E-22 136.8 14.6 119 123-257 2-123 (126)
112 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 4.4E-18 9.6E-23 136.6 13.1 118 124-253 2-120 (121)
113 cd08675 C2B_RasGAP C2 domain s 99.8 3.6E-18 7.7E-23 139.8 12.2 111 124-237 1-124 (137)
114 cd04050 C2B_Synaptotagmin-like 99.8 4.8E-18 1E-22 132.9 12.3 101 276-410 2-103 (105)
115 cd04014 C2_PKC_epsilon C2 doma 99.8 6.9E-18 1.5E-22 137.8 13.7 117 121-256 3-130 (132)
116 cd04050 C2B_Synaptotagmin-like 99.8 3.1E-18 6.8E-23 133.9 10.7 100 124-234 2-103 (105)
117 cd04041 C2A_fungal C2 domain f 99.8 2.1E-18 4.5E-23 136.3 9.2 95 274-371 1-98 (111)
118 cd04039 C2_PSD C2 domain prese 99.8 4.6E-18 1E-22 133.0 11.1 96 122-223 1-99 (108)
119 cd08382 C2_Smurf-like C2 domai 99.8 8E-18 1.7E-22 135.5 12.6 118 124-252 2-122 (123)
120 cd04018 C2C_Ferlin C2 domain t 99.8 7.3E-19 1.6E-23 145.1 5.8 115 275-400 1-130 (151)
121 KOG1030|consensus 99.8 3.1E-18 6.8E-23 138.6 9.3 94 121-223 5-98 (168)
122 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.7E-18 8E-23 136.5 9.6 98 275-381 1-108 (126)
123 cd04039 C2_PSD C2 domain prese 99.8 3.6E-18 7.8E-23 133.6 8.9 92 274-372 1-97 (108)
124 cd04046 C2_Calpain C2 domain p 99.8 2.6E-17 5.6E-22 133.2 14.2 123 121-257 2-124 (126)
125 cd04027 C2B_Munc13 C2 domain s 99.8 1.3E-17 2.8E-22 135.1 12.5 115 123-252 2-127 (127)
126 KOG1030|consensus 99.7 2.4E-18 5.2E-23 139.3 7.4 90 273-371 5-95 (168)
127 cd04022 C2A_MCTP_PRT_plant C2 99.7 5.1E-18 1.1E-22 137.6 9.1 91 275-371 1-94 (127)
128 cd04042 C2A_MCTP_PRT C2 domain 99.7 7.9E-18 1.7E-22 135.4 10.1 100 275-382 1-101 (121)
129 cd08375 C2_Intersectin C2 doma 99.7 1.1E-17 2.4E-22 136.6 10.7 93 270-370 11-104 (136)
130 cd08676 C2A_Munc13-like C2 dom 99.7 1.8E-17 4E-22 136.9 11.4 106 118-231 24-153 (153)
131 cd08394 C2A_Munc13 C2 domain f 99.7 2.6E-17 5.7E-22 129.7 11.6 102 122-237 2-105 (127)
132 cd04011 C2B_Ferlin C2 domain s 99.7 1.1E-17 2.4E-22 132.2 9.6 103 121-233 3-110 (111)
133 cd04019 C2C_MCTP_PRT_plant C2 99.7 9.1E-18 2E-22 139.2 8.9 89 275-371 1-91 (150)
134 cd04011 C2B_Ferlin C2 domain s 99.7 1.5E-17 3.2E-22 131.5 9.7 91 272-370 2-93 (111)
135 cd08691 C2_NEDL1-like C2 domai 99.7 6.2E-17 1.3E-21 131.6 13.5 120 123-252 2-136 (137)
136 cd08376 C2B_MCTP_PRT C2 domain 99.7 2E-17 4.3E-22 132.1 10.0 99 275-381 1-100 (116)
137 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.2E-17 4.8E-22 132.2 10.2 87 276-370 2-90 (121)
138 cd08681 C2_fungal_Inn1p-like C 99.7 2E-17 4.4E-22 132.4 9.6 89 274-371 1-91 (118)
139 cd04036 C2_cPLA2 C2 domain pre 99.7 2.7E-17 5.8E-22 131.9 10.2 100 276-381 2-102 (119)
140 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2E-17 4.3E-22 133.5 9.4 88 275-370 1-89 (123)
141 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.8E-17 4E-22 132.7 8.9 113 275-405 1-113 (121)
142 cd04018 C2C_Ferlin C2 domain t 99.7 3E-17 6.6E-22 135.5 10.4 106 123-234 1-126 (151)
143 cd04037 C2E_Ferlin C2 domain f 99.7 6.9E-17 1.5E-21 130.1 11.9 109 275-403 1-110 (124)
144 cd04049 C2_putative_Elicitor-r 99.7 6.6E-17 1.4E-21 130.6 11.8 108 122-235 1-110 (124)
145 cd08383 C2A_RasGAP C2 domain ( 99.7 1E-16 2.2E-21 128.3 12.3 116 124-254 2-117 (117)
146 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 9.4E-17 2E-21 128.9 11.3 86 276-369 2-88 (121)
147 cd04051 C2_SRC2_like C2 domain 99.7 6.8E-17 1.5E-21 130.8 10.4 116 124-250 2-125 (125)
148 cd04015 C2_plant_PLD C2 domain 99.7 1.3E-17 2.8E-22 139.8 6.3 89 273-370 6-125 (158)
149 cd08400 C2_Ras_p21A1 C2 domain 99.7 9.2E-17 2E-21 129.8 11.0 99 273-381 3-101 (126)
150 cd04017 C2D_Ferlin C2 domain f 99.7 8.6E-17 1.9E-21 131.8 10.6 89 274-367 1-96 (135)
151 cd08676 C2A_Munc13-like C2 dom 99.7 7.1E-17 1.5E-21 133.4 10.1 95 270-371 24-143 (153)
152 cd04024 C2A_Synaptotagmin-like 99.7 5.1E-17 1.1E-21 132.2 9.1 89 274-370 1-92 (128)
153 cd08394 C2A_Munc13 C2 domain f 99.7 1E-16 2.2E-21 126.4 10.1 97 274-383 2-100 (127)
154 cd04040 C2D_Tricalbin-like C2 99.7 1.7E-16 3.6E-21 126.6 11.3 106 124-236 1-106 (115)
155 cd08690 C2_Freud-1 C2 domain f 99.7 2.5E-16 5.5E-21 129.8 12.1 93 277-370 5-107 (155)
156 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.2E-16 2.6E-21 128.6 10.0 99 274-381 1-106 (121)
157 cd04032 C2_Perforin C2 domain 99.7 2.2E-16 4.7E-21 126.5 11.3 94 270-371 24-118 (127)
158 cd08675 C2B_RasGAP C2 domain s 99.7 1.4E-16 3E-21 130.4 10.4 92 276-370 1-106 (137)
159 cd04048 C2A_Copine C2 domain f 99.7 1.7E-16 3.7E-21 127.3 10.7 104 127-233 5-114 (120)
160 cd04045 C2C_Tricalbin-like C2 99.7 2.3E-16 4.9E-21 126.2 11.0 106 122-236 1-106 (120)
161 cd04032 C2_Perforin C2 domain 99.7 2.8E-16 6E-21 125.9 11.4 92 121-220 27-118 (127)
162 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.7E-16 3.8E-21 129.9 10.0 125 276-409 2-130 (133)
163 cd08686 C2_ABR C2 domain in th 99.7 3.9E-16 8.4E-21 121.4 11.0 85 124-218 1-92 (118)
164 cd04038 C2_ArfGAP C2 domain pr 99.7 2.1E-16 4.5E-21 129.9 9.9 88 274-370 2-89 (145)
165 cd04037 C2E_Ferlin C2 domain f 99.7 3.4E-16 7.3E-21 126.1 10.8 120 124-257 2-121 (124)
166 cd08678 C2_C21orf25-like C2 do 99.7 2.1E-16 4.5E-21 127.9 9.5 98 276-381 1-98 (126)
167 cd08382 C2_Smurf-like C2 domai 99.7 2.8E-16 6E-21 126.5 10.1 88 275-371 1-91 (123)
168 cd04049 C2_putative_Elicitor-r 99.7 2.4E-16 5.3E-21 127.3 9.6 103 274-382 1-106 (124)
169 cd04045 C2C_Tricalbin-like C2 99.7 2.6E-16 5.6E-21 125.9 9.2 90 274-371 1-91 (120)
170 cd04043 C2_Munc13_fungal C2 do 99.7 1.6E-15 3.4E-20 123.0 12.6 90 275-369 2-92 (126)
171 cd08377 C2C_MCTP_PRT C2 domain 99.7 5.3E-16 1.1E-20 124.5 9.6 88 274-370 1-89 (119)
172 cd00275 C2_PLC_like C2 domain 99.7 2.4E-15 5.1E-20 122.3 13.4 122 122-254 2-127 (128)
173 cd04038 C2_ArfGAP C2 domain pr 99.7 8.7E-16 1.9E-20 126.3 10.8 90 122-221 2-91 (145)
174 cd04014 C2_PKC_epsilon C2 doma 99.7 8.7E-16 1.9E-20 125.4 10.7 90 273-371 3-103 (132)
175 cd08686 C2_ABR C2 domain in th 99.6 8.6E-16 1.9E-20 119.5 9.8 85 276-369 1-92 (118)
176 cd04013 C2_SynGAP_like C2 doma 99.6 1.8E-15 3.8E-20 123.5 11.6 123 122-257 11-141 (146)
177 cd04048 C2A_Copine C2 domain f 99.6 9.6E-16 2.1E-20 123.0 9.3 99 279-380 5-110 (120)
178 cd04052 C2B_Tricalbin-like C2 99.6 1.6E-15 3.5E-20 119.7 10.3 101 141-257 10-111 (111)
179 cd04027 C2B_Munc13 C2 domain s 99.6 9E-16 2E-20 124.3 8.5 88 274-370 1-100 (127)
180 cd04040 C2D_Tricalbin-like C2 99.6 1.6E-15 3.4E-20 120.9 9.8 89 276-371 1-90 (115)
181 cd08374 C2F_Ferlin C2 domain s 99.6 1.7E-15 3.6E-20 121.3 9.7 96 275-373 1-124 (133)
182 cd04021 C2_E3_ubiquitin_ligase 99.6 3.4E-15 7.3E-20 120.4 11.6 118 122-252 2-124 (125)
183 cd04051 C2_SRC2_like C2 domain 99.6 1.4E-15 3.1E-20 123.0 9.0 93 275-372 1-97 (125)
184 KOG1326|consensus 99.6 1.2E-15 2.6E-20 152.2 9.8 244 122-373 613-970 (1105)
185 cd04044 C2A_Tricalbin-like C2 99.6 2.8E-15 6.1E-20 121.2 10.2 91 274-371 2-94 (124)
186 cd08691 C2_NEDL1-like C2 domai 99.6 3.8E-15 8.2E-20 121.1 10.7 93 275-373 2-107 (137)
187 cd08373 C2A_Ferlin C2 domain f 99.6 1.1E-15 2.4E-20 123.9 7.0 93 280-379 2-94 (127)
188 PLN03008 Phospholipase D delta 99.6 5.5E-15 1.2E-19 148.1 12.4 109 142-261 75-183 (868)
189 cd04046 C2_Calpain C2 domain p 99.6 1.2E-14 2.5E-19 117.6 11.4 87 273-369 2-89 (126)
190 cd04047 C2B_Copine C2 domain s 99.6 6.1E-15 1.3E-19 116.5 8.9 91 277-371 3-99 (110)
191 KOG1011|consensus 99.6 9E-14 2E-18 132.8 17.4 121 121-256 294-425 (1283)
192 cd04047 C2B_Copine C2 domain s 99.6 1.7E-14 3.8E-19 113.8 10.0 92 125-220 3-99 (110)
193 cd00275 C2_PLC_like C2 domain 99.6 2.2E-14 4.7E-19 116.7 10.6 95 274-372 2-101 (128)
194 cd08383 C2A_RasGAP C2 domain ( 99.6 2.3E-14 5.1E-19 114.5 10.4 85 276-368 2-86 (117)
195 cd08374 C2F_Ferlin C2 domain s 99.6 4.7E-14 1E-18 113.0 11.1 98 123-223 1-125 (133)
196 PF00168 C2: C2 domain; Inter 99.5 5.3E-14 1.1E-18 105.4 9.5 85 124-213 1-85 (85)
197 cd04021 C2_E3_ubiquitin_ligase 99.5 1.1E-13 2.3E-18 111.7 11.6 87 274-370 2-89 (125)
198 cd04013 C2_SynGAP_like C2 doma 99.5 8.3E-15 1.8E-19 119.6 4.7 86 273-370 10-99 (146)
199 PF00168 C2: C2 domain; Inter 99.5 5.2E-14 1.1E-18 105.4 8.8 84 276-364 1-85 (85)
200 KOG0905|consensus 99.5 4.5E-14 9.7E-19 142.7 8.0 126 105-233 1509-1635(1639)
201 PLN03200 cellulose synthase-in 99.5 1.7E-13 3.7E-18 149.9 11.2 120 121-256 1979-2101(2102)
202 KOG1326|consensus 99.4 4.1E-14 8.9E-19 141.5 3.4 90 274-369 613-703 (1105)
203 cd04052 C2B_Tricalbin-like C2 99.4 1.5E-13 3.3E-18 108.4 6.0 70 293-370 12-81 (111)
204 PLN03008 Phospholipase D delta 99.4 6.1E-14 1.3E-18 140.8 4.5 69 293-370 76-144 (868)
205 PLN03200 cellulose synthase-in 99.4 5.4E-13 1.2E-17 146.1 8.2 104 272-383 1978-2081(2102)
206 smart00239 C2 Protein kinase C 99.4 9.6E-12 2.1E-16 95.9 11.3 95 124-223 2-96 (101)
207 KOG0905|consensus 99.3 1.2E-12 2.5E-17 132.7 6.8 123 244-383 1511-1634(1639)
208 smart00239 C2 Protein kinase C 99.3 8.9E-12 1.9E-16 96.1 10.1 94 275-373 1-95 (101)
209 cd00030 C2 C2 domain. The C2 d 99.3 1.5E-11 3.3E-16 94.6 11.0 101 124-231 1-102 (102)
210 KOG1328|consensus 99.3 1E-12 2.2E-17 127.3 4.6 112 108-220 933-1048(1103)
211 PLN02223 phosphoinositide phos 99.3 1.1E-11 2.3E-16 119.9 10.2 111 273-386 408-524 (537)
212 KOG1327|consensus 99.3 1.9E-11 4.2E-16 117.1 10.8 199 9-234 42-249 (529)
213 cd00030 C2 C2 domain. The C2 d 99.2 4.2E-11 9.1E-16 92.1 9.4 89 276-371 1-90 (102)
214 PLN02223 phosphoinositide phos 99.2 1.2E-10 2.7E-15 112.7 13.5 108 122-235 409-521 (537)
215 PLN02230 phosphoinositide phos 99.2 5.2E-11 1.1E-15 117.5 9.9 111 273-386 468-585 (598)
216 PLN02952 phosphoinositide phos 99.2 9.3E-11 2E-15 116.0 10.9 110 273-385 469-585 (599)
217 PLN02222 phosphoinositide phos 99.2 7.9E-11 1.7E-15 116.1 10.3 111 273-386 451-568 (581)
218 PLN02952 phosphoinositide phos 99.2 3.9E-10 8.5E-15 111.6 14.2 110 121-235 469-583 (599)
219 KOG1327|consensus 99.2 6E-10 1.3E-14 107.0 14.1 186 160-372 41-236 (529)
220 KOG1031|consensus 99.1 1.1E-10 2.4E-15 110.8 8.1 117 273-410 2-121 (1169)
221 cd08684 C2A_Tac2-N C2 domain f 99.1 8.1E-11 1.8E-15 84.1 5.0 102 125-231 2-103 (103)
222 KOG1011|consensus 99.1 6.9E-11 1.5E-15 113.5 6.0 118 269-408 290-420 (1283)
223 PLN02228 Phosphoinositide phos 99.1 2.9E-10 6.3E-15 111.8 10.1 111 273-386 430-548 (567)
224 KOG0169|consensus 99.1 1.3E-10 2.9E-15 114.6 7.7 111 275-388 617-733 (746)
225 KOG1031|consensus 99.1 1.7E-10 3.8E-15 109.5 7.9 122 121-253 2-134 (1169)
226 PLN02230 phosphoinositide phos 99.1 1.2E-09 2.5E-14 108.1 13.4 110 121-235 468-582 (598)
227 PLN02270 phospholipase D alpha 99.1 9.4E-10 2E-14 111.0 12.8 130 121-261 7-154 (808)
228 cd08684 C2A_Tac2-N C2 domain f 99.1 2.4E-10 5.1E-15 81.8 5.8 99 278-393 3-103 (103)
229 KOG1264|consensus 99.1 7.2E-10 1.6E-14 109.1 11.1 126 122-258 1065-1192(1267)
230 PLN02222 phosphoinositide phos 99.0 2.4E-09 5.3E-14 105.7 13.5 109 121-234 451-564 (581)
231 PLN02228 Phosphoinositide phos 99.0 3.5E-09 7.6E-14 104.3 14.0 128 121-257 430-563 (567)
232 PLN02270 phospholipase D alpha 99.0 3.1E-10 6.7E-15 114.4 5.5 120 273-412 7-146 (808)
233 KOG0169|consensus 99.0 4.3E-09 9.3E-14 104.2 10.9 97 123-221 617-717 (746)
234 KOG1264|consensus 99.0 2.9E-09 6.4E-14 104.9 9.5 121 273-396 1064-1186(1267)
235 cd08683 C2_C2cd3 C2 domain fou 98.9 9.3E-09 2E-13 79.6 7.5 92 276-369 1-129 (143)
236 cd08689 C2_fungal_Pkc1p C2 dom 98.8 2.6E-08 5.6E-13 74.9 7.0 83 124-219 1-86 (109)
237 cd08689 C2_fungal_Pkc1p C2 dom 98.7 2.4E-08 5.1E-13 75.2 6.0 82 276-370 1-86 (109)
238 KOG2060|consensus 98.7 6.4E-09 1.4E-13 94.6 3.0 126 107-237 256-383 (405)
239 cd08683 C2_C2cd3 C2 domain fou 98.5 9.2E-08 2E-12 74.2 3.5 105 124-231 1-143 (143)
240 KOG2060|consensus 98.5 1.8E-07 4E-12 85.3 5.9 96 270-369 265-363 (405)
241 PLN02352 phospholipase D epsil 98.4 2.1E-06 4.6E-11 87.0 11.1 122 121-260 9-135 (758)
242 PF12416 DUF3668: Cep120 prote 98.4 6E-05 1.3E-09 70.3 19.2 224 124-370 2-293 (340)
243 PLN02352 phospholipase D epsil 98.2 9.7E-07 2.1E-11 89.4 4.2 111 273-410 9-126 (758)
244 KOG3837|consensus 97.8 1.5E-05 3.3E-10 73.7 3.1 130 120-256 365-504 (523)
245 PLN02964 phosphatidylserine de 97.6 0.00013 2.9E-09 73.7 7.3 87 271-370 51-137 (644)
246 PLN02964 phosphatidylserine de 97.6 8.7E-05 1.9E-09 74.9 5.8 88 119-221 51-139 (644)
247 cd08398 C2_PI3K_class_I_alpha 97.5 0.0015 3.3E-08 54.4 11.0 93 273-369 7-105 (158)
248 cd08398 C2_PI3K_class_I_alpha 97.5 0.00083 1.8E-08 55.9 9.0 93 121-218 7-105 (158)
249 cd08380 C2_PI3K_like C2 domain 97.4 0.00092 2E-08 56.0 8.7 96 273-369 7-106 (156)
250 cd08693 C2_PI3K_class_I_beta_d 97.3 0.0014 3E-08 55.6 9.1 95 121-218 7-119 (173)
251 cd08693 C2_PI3K_class_I_beta_d 97.3 0.0013 2.9E-08 55.8 8.5 95 273-369 7-119 (173)
252 cd08380 C2_PI3K_like C2 domain 97.3 0.0017 3.7E-08 54.3 8.8 95 122-218 8-106 (156)
253 KOG1265|consensus 97.1 0.00087 1.9E-08 68.0 6.0 89 121-220 702-795 (1189)
254 KOG1265|consensus 97.0 0.0011 2.4E-08 67.2 6.1 94 273-375 702-799 (1189)
255 cd04012 C2A_PI3K_class_II C2 d 96.9 0.0037 8.1E-08 53.1 7.7 97 121-218 7-118 (171)
256 cd08399 C2_PI3K_class_I_gamma 96.9 0.0086 1.9E-07 50.7 9.6 79 121-201 9-88 (178)
257 cd08397 C2_PI3K_class_III C2 d 96.9 0.0043 9.3E-08 51.8 7.6 76 293-369 29-106 (159)
258 cd08399 C2_PI3K_class_I_gamma 96.9 0.0059 1.3E-07 51.7 8.4 95 273-369 9-121 (178)
259 cd08397 C2_PI3K_class_III C2 d 96.9 0.0042 9.1E-08 51.9 7.5 77 142-218 28-106 (159)
260 cd04012 C2A_PI3K_class_II C2 d 96.9 0.0036 7.9E-08 53.1 7.2 96 273-369 7-118 (171)
261 PF15627 CEP76-C2: CEP76 C2 do 96.8 0.015 3.2E-07 47.8 10.0 132 120-257 7-152 (156)
262 PF10358 NT-C2: N-terminal C2 96.6 0.053 1.1E-06 44.5 12.2 121 123-257 8-137 (143)
263 PF00792 PI3K_C2: Phosphoinosi 96.6 0.011 2.4E-07 48.6 7.7 74 145-218 3-84 (142)
264 PF00792 PI3K_C2: Phosphoinosi 96.2 0.015 3.2E-07 47.8 6.5 74 295-369 3-84 (142)
265 PF12416 DUF3668: Cep120 prote 96.1 0.015 3.3E-07 54.5 6.7 87 276-370 2-94 (340)
266 KOG3837|consensus 96.0 0.0034 7.3E-08 58.6 1.8 97 273-370 366-473 (523)
267 smart00142 PI3K_C2 Phosphoinos 95.9 0.039 8.4E-07 42.2 7.2 76 276-352 13-91 (100)
268 PF14429 DOCK-C2: C2 domain in 95.8 0.088 1.9E-06 45.3 9.9 60 309-369 58-120 (184)
269 smart00142 PI3K_C2 Phosphoinos 95.8 0.055 1.2E-06 41.4 7.5 77 124-201 13-91 (100)
270 PF14429 DOCK-C2: C2 domain in 95.8 0.15 3.3E-06 43.8 11.2 59 160-218 59-120 (184)
271 cd08695 C2_Dock-B C2 domains f 95.0 0.091 2E-06 44.9 6.8 59 309-368 52-112 (189)
272 cd08695 C2_Dock-B C2 domains f 94.9 0.079 1.7E-06 45.2 6.3 60 159-218 52-113 (189)
273 PF15627 CEP76-C2: CEP76 C2 do 94.9 0.19 4.1E-06 41.4 8.2 95 271-369 6-114 (156)
274 cd08694 C2_Dock-A C2 domains f 94.2 0.34 7.5E-06 41.5 8.6 59 159-217 52-114 (196)
275 cd08694 C2_Dock-A C2 domains f 94.1 0.22 4.7E-06 42.7 7.2 60 308-368 51-114 (196)
276 PF10358 NT-C2: N-terminal C2 94.0 1.1 2.3E-05 36.6 11.2 92 273-370 6-104 (143)
277 KOG1452|consensus 92.3 0.68 1.5E-05 42.1 7.7 85 117-209 46-131 (442)
278 cd08687 C2_PKN-like C2 domain 92.1 1.6 3.5E-05 32.3 8.0 84 144-254 9-92 (98)
279 cd08697 C2_Dock-D C2 domains f 90.2 3.4 7.5E-05 35.3 9.7 59 159-217 55-122 (185)
280 cd08679 C2_DOCK180_related C2 89.6 2.8 6E-05 35.8 8.8 56 162-218 55-115 (178)
281 cd08696 C2_Dock-C C2 domains f 89.2 4.7 0.0001 34.3 9.7 60 159-218 53-118 (179)
282 cd08679 C2_DOCK180_related C2 88.5 1.7 3.6E-05 37.1 6.7 55 314-369 56-115 (178)
283 cd08697 C2_Dock-D C2 domains f 88.2 3.1 6.8E-05 35.6 8.0 60 309-369 55-123 (185)
284 cd08696 C2_Dock-C C2 domains f 88.0 1.5 3.3E-05 37.2 6.0 60 309-369 53-118 (179)
285 PF11618 DUF3250: Protein of u 87.2 2.3 5E-05 32.8 6.1 66 297-369 2-72 (107)
286 KOG1452|consensus 84.7 2.3 5.1E-05 38.8 5.6 74 273-355 50-126 (442)
287 PF11618 DUF3250: Protein of u 81.4 3.1 6.7E-05 32.1 4.5 60 161-222 12-76 (107)
288 PF15625 CC2D2AN-C2: CC2D2A N- 80.0 8.4 0.00018 32.5 7.1 68 293-369 36-105 (168)
289 PF14186 Aida_C2: Cytoskeletal 80.0 12 0.00026 30.6 7.6 99 271-373 10-115 (147)
290 PF07162 B9-C2: Ciliary basal 72.1 38 0.00083 28.5 9.1 100 279-384 7-120 (168)
291 PF07162 B9-C2: Ciliary basal 71.3 60 0.0013 27.3 10.1 48 170-217 54-102 (168)
292 KOG0904|consensus 69.7 20 0.00043 37.8 7.8 75 273-350 342-420 (1076)
293 KOG4027|consensus 67.9 28 0.00061 28.6 6.8 28 342-369 83-110 (187)
294 PF10409 PTEN_C2: C2 domain of 67.8 50 0.0011 26.4 8.7 92 274-370 4-97 (134)
295 KOG0904|consensus 66.7 23 0.00049 37.4 7.5 77 120-200 341-421 (1076)
296 PTZ00447 apical membrane antig 62.1 86 0.0019 29.5 9.6 110 121-252 57-170 (508)
297 PF10409 PTEN_C2: C2 domain of 61.9 80 0.0017 25.2 9.7 92 122-219 4-97 (134)
298 KOG0906|consensus 60.4 16 0.00035 37.1 5.1 76 293-369 46-123 (843)
299 KOG0694|consensus 60.2 2.7 5.9E-05 42.7 -0.2 96 142-256 26-122 (694)
300 PF15625 CC2D2AN-C2: CC2D2A N- 60.0 51 0.0011 27.7 7.5 68 144-219 37-106 (168)
301 KOG1329|consensus 58.7 4.5 9.8E-05 42.5 1.1 72 293-372 137-209 (887)
302 KOG1329|consensus 56.3 18 0.00039 38.3 4.8 106 144-259 138-244 (887)
303 PF14186 Aida_C2: Cytoskeletal 54.1 1E+02 0.0022 25.3 7.9 98 119-220 10-113 (147)
304 KOG4027|consensus 49.9 1.4E+02 0.003 24.7 7.9 77 142-218 24-110 (187)
305 PF14909 SPATA6: Spermatogenes 48.7 63 0.0014 26.2 5.8 72 293-370 19-99 (140)
306 KOG0906|consensus 48.7 27 0.00058 35.6 4.5 76 143-218 46-123 (843)
307 cd05137 RasGAP_CLA2_BUD2 CLA2/ 48.2 20 0.00044 34.8 3.6 45 208-257 1-46 (395)
308 PF14909 SPATA6: Spermatogenes 45.1 1.7E+02 0.0036 23.8 9.1 88 124-221 4-101 (140)
309 PF15532 Toxin_53: Putative to 41.8 1.4E+02 0.003 22.7 6.3 62 112-178 24-92 (102)
310 KOG2419|consensus 40.4 7.2 0.00016 39.3 -0.7 147 143-350 304-460 (975)
311 PF14924 DUF4497: Protein of u 37.2 85 0.0018 24.3 5.0 73 177-255 11-104 (112)
312 KOG0694|consensus 35.2 15 0.00033 37.6 0.6 56 293-357 27-82 (694)
313 cd08687 C2_PKN-like C2 domain 33.2 1.6E+02 0.0035 22.0 5.4 49 295-353 10-58 (98)
314 KOG0241|consensus 30.6 84 0.0018 33.8 4.9 143 206-358 770-932 (1714)
315 KOG4269|consensus 29.8 29 0.00063 36.7 1.5 88 272-368 757-854 (1112)
316 KOG4269|consensus 27.9 30 0.00066 36.6 1.3 70 121-200 758-827 (1112)
317 KOG4428|consensus 22.4 1.3E+02 0.0029 30.7 4.4 67 142-208 49-116 (813)
318 PF06219 DUF1005: Protein of u 21.8 4.9E+02 0.011 25.5 7.8 108 274-407 12-145 (460)
319 PF08151 FerI: FerI (NUC094) d 20.4 1.5E+02 0.0032 21.0 3.2 34 225-261 15-48 (72)
No 1
>KOG1028|consensus
Probab=100.00 E-value=3.6e-51 Score=391.83 Aligned_cols=272 Identities=41% Similarity=0.653 Sum_probs=251.5
Q ss_pred ceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEc
Q psy12482 104 SVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183 (419)
Q Consensus 104 ~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v 183 (419)
.....|+|.+++.|+.....|.|+|++|++|+.++.. |.+||||+++++|+. ..+.+|+++++|+||+|||+|.|.|
T Consensus 149 ~~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~-g~sdpyVK~~llPdk--~~k~kT~v~r~tlnP~fnEtf~f~v 225 (421)
T KOG1028|consen 149 NVKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRG-GTSDPYVKVYLLPDK--KGKFKTRVHRKTLNPVFNETFRFEV 225 (421)
T ss_pred cceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCC-CCCCCeeEEEEcCCC--CCcceeeeeecCcCCccccceEeec
Confidence 4567899999999999999999999999999999943 789999999999988 4489999999999999999999999
Q ss_pred ccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCccc
Q psy12482 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLS 263 (419)
Q Consensus 184 ~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~ 263 (419)
+.+++....|.++|||+|.++++++||++.++|..+........|.+|.+....... ..|+|.++++|.|.
T Consensus 226 ~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~---~~gel~~sL~Y~p~------ 296 (421)
T KOG1028|consen 226 PYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEE---LAGELLLSLCYLPT------ 296 (421)
T ss_pred CHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCccc---ccceEEEEEEeecC------
Confidence 999999999999999999999999999999999998888778899999887554332 22899999999998
Q ss_pred cccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccC
Q psy12482 264 SAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSER 342 (419)
Q Consensus 264 ~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~ 342 (419)
.|+|.|.|++|+||+.++.+ .+||||++.+.......++++|.+++++.||+|||+|.|. ++.+.+++.
T Consensus 297 ---------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~-vp~~~l~~~ 366 (421)
T KOG1028|consen 297 ---------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFD-VPPEQLAEV 366 (421)
T ss_pred ---------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEe-CCHHHhhee
Confidence 79999999999999999998 9999999999988888899999999999999999999995 999999999
Q ss_pred eEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCC
Q psy12482 343 CLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSS 410 (419)
Q Consensus 343 ~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~ 410 (419)
+|.|+|||++.++++++||++.++.. ..|.+..||.+|+++|++|+++||.|+++
T Consensus 367 ~l~l~V~d~d~~~~~~~iG~~~lG~~-------------~~~~~~~hW~~m~~~p~~pv~~wh~l~~~ 421 (421)
T KOG1028|consen 367 SLELTVWDHDTLGSNDLIGRCILGSD-------------STGEEVRHWQEMLNSPRKPVAQWHSLRSS 421 (421)
T ss_pred EEEEEEEEcccccccceeeEEEecCC-------------CCchHHHHHHHHHhCccCceeeeEecccC
Confidence 99999999999999999999999873 47888999999999999999999999874
No 2
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=100.00 E-value=1.2e-33 Score=229.61 Aligned_cols=134 Identities=25% Similarity=0.435 Sum_probs=125.4
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCC--C-CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKS--N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTS 322 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~--~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n 322 (419)
|+|.++++|.|. .++|.|+|++|+||+.++. . .+||||+|.+.+++.+..++||++++++.|
T Consensus 2 Gel~~sL~Y~~~---------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~n 66 (138)
T cd08407 2 GEVLLSISYLPA---------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKIN 66 (138)
T ss_pred CEEEEEEEEeCC---------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCC
Confidence 999999999998 7999999999999999883 2 689999999998877778899999999999
Q ss_pred CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEE
Q psy12482 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVE 402 (419)
Q Consensus 323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~ 402 (419)
|+|||.|.|. ++.+++.+.+|.|+|||++.++++++||++.|++ ...|.+.+||.+|+.+|+++|+
T Consensus 67 PvfNE~f~F~-v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~-------------~~~g~~~~hW~~ml~~p~~~va 132 (138)
T cd08407 67 PVWNEMIMFE-LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGL-------------HTSGTERQHWEEMLDNPRRQIA 132 (138)
T ss_pred CccccEEEEE-CCHHHhCccEEEEEEEeCCCCcCcceeceEEecC-------------cCCCcHHHHHHHHHhCCCCchh
Confidence 9999999996 9999999999999999999999999999999998 3578899999999999999999
Q ss_pred eeeecc
Q psy12482 403 SCIPLR 408 (419)
Q Consensus 403 ~w~~l~ 408 (419)
+||.|+
T Consensus 133 ~WH~L~ 138 (138)
T cd08407 133 MWHQLH 138 (138)
T ss_pred EEEECC
Confidence 999985
No 3
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=100.00 E-value=2.2e-32 Score=218.29 Aligned_cols=133 Identities=23% Similarity=0.396 Sum_probs=119.7
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCC-CC
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST-SP 323 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~-nP 323 (419)
.+|.++++|.|. .++|.|+|++|+||+++... ..||||||++.+.+.+..++||.++++|+ ||
T Consensus 1 ~el~~sL~Y~p~---------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P 65 (135)
T cd08692 1 AELQLGTCFQAV---------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQV 65 (135)
T ss_pred CeEEEEeeecCc---------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCc
Confidence 379999999999 89999999999999998655 78999999999888888899999999995 69
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES 403 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~ 403 (419)
+|||+|.|+ ++.++ .+.++.|+|||++..+++++||++.|+.+. ..|.+.+||.+|+.+|+++|++
T Consensus 66 ~fNEsF~Fd-v~~~~-~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~------------~~~~~~~hW~~m~~~pr~~ia~ 131 (135)
T cd08692 66 KWGETMIFP-VTQQE-HGIQFLIKLYSRSSVRRKHFLGQVWISSDS------------SSSEAVEQWKDTIANPEKVVTK 131 (135)
T ss_pred eecceEEEe-CCchh-heeEEEEEEEeCCCCcCCceEEEEEECCcc------------CCchhhhhHHHHHhCCCCeeeE
Confidence 999999996 88764 467899999999999999999999999843 3566799999999999999999
Q ss_pred eeec
Q psy12482 404 CIPL 407 (419)
Q Consensus 404 w~~l 407 (419)
||.|
T Consensus 132 WH~L 135 (135)
T cd08692 132 WHSL 135 (135)
T ss_pred eecC
Confidence 9987
No 4
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=100.00 E-value=3.3e-32 Score=221.49 Aligned_cols=134 Identities=28% Similarity=0.457 Sum_probs=124.8
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~ 324 (419)
|+|.++++|.|. .++|.|+|++|+||+..+.+ .+||||+|.+.+++....+++|+++++++||+
T Consensus 2 G~i~~sL~Y~~~---------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~ 66 (136)
T cd08406 2 GEILLSLSYLPT---------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPI 66 (136)
T ss_pred cEEEEEEEEcCC---------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCe
Confidence 999999999998 78999999999999998877 89999999998876666688999999999999
Q ss_pred cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEee
Q psy12482 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESC 404 (419)
Q Consensus 325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w 404 (419)
|||+|.|. ++..++.+.+|.|+|||++.++++++||++.|+. ...|.+.+||.+|+.+|+.+|++|
T Consensus 67 ~nE~f~F~-v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~-------------~~~g~~~~hW~~ml~~~~~~v~~W 132 (136)
T cd08406 67 FNEAMIFS-VPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGP-------------AASGMGLSHWNQMLASLRKPVAMW 132 (136)
T ss_pred eceeEEEE-CCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECC-------------CCCChhHHHHHHHHHCCCCeeeEe
Confidence 99999996 9988999999999999999999999999999976 357889999999999999999999
Q ss_pred eecc
Q psy12482 405 IPLR 408 (419)
Q Consensus 405 ~~l~ 408 (419)
|.|+
T Consensus 133 H~l~ 136 (136)
T cd08406 133 HPLR 136 (136)
T ss_pred eecC
Confidence 9985
No 5
>KOG1028|consensus
Probab=99.98 E-value=1.9e-32 Score=262.84 Aligned_cols=207 Identities=31% Similarity=0.416 Sum_probs=167.4
Q ss_pred cccCcceeeecccCCCCcccceeeeceeeceeeccccccccCCCCcCcccccccCccCCcccccccccccccCCcccccc
Q psy12482 5 SKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNKSLLG 84 (419)
Q Consensus 5 ~k~~k~kT~v~~~t~nP~wnE~f~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~ 84 (419)
+|++|+||+|+++|+||+|||+|.|. +....+....+. +.|+|+|.|++++++|++.+.+...+.... ...|..+.
T Consensus 199 dk~~k~kT~v~r~tlnP~fnEtf~f~-v~~~~l~~~~L~-l~V~~~drfsr~~~iGev~~~l~~~~~~~~--~~~w~~l~ 274 (421)
T KOG1028|consen 199 DKKGKFKTRVHRKTLNPVFNETFRFE-VPYEELSNRVLH-LSVYDFDRFSRHDFIGEVILPLGEVDLLST--TLFWKDLQ 274 (421)
T ss_pred CCCCcceeeeeecCcCCccccceEee-cCHHHhccCEEE-EEEEecCCcccccEEEEEEecCcccccccc--ceeeeccc
Confidence 34899999999999999999999996 333344444444 779999999999999999887776666542 11122221
Q ss_pred cccCCccccccCCCCCCCCceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeec
Q psy12482 85 ARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKT 164 (419)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT 164 (419)
..... . ....|+|.++|+|.+..++|+|.|++|++|..++.. +.+||||++++.+++++..++||
T Consensus 275 ~~~~~--------~------~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~-~~~d~~Vk~~l~~~~~~~~kkkT 339 (421)
T KOG1028|consen 275 PSSTD--------S------EELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVG-GLSDPYVKVTLLDGDKRLSKKKT 339 (421)
T ss_pred cccCC--------c------ccccceEEEEEEeecCCCeEEEEEEEecCCCcccCC-CCCCccEEEEEecCCceeeeeee
Confidence 11100 0 011289999999999999999999999999999987 89999999999988888889999
Q ss_pred ccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482 165 RVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ 232 (419)
Q Consensus 165 ~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~ 232 (419)
.+++++.||+|||+|.|.|+.+.+.+..|.|+|||++.++++++||++.++... ...+..+|.++.
T Consensus 340 ~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~ 405 (421)
T KOG1028|consen 340 SVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEML 405 (421)
T ss_pred ecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998875 233345666543
No 6
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.97 E-value=6.2e-30 Score=215.01 Aligned_cols=161 Identities=60% Similarity=1.069 Sum_probs=141.6
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
+|+|.++++|.|...+... .......+.|.|+|++|+||+..+.. .+||||+|.+.+...+..+++|++++++.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~---~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP 77 (162)
T cd04020 1 RGELKVALKYVPPESEGAL---KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNP 77 (162)
T ss_pred CceEEEEEEecCccccccc---cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCC
Confidence 4999999999996533222 11333479999999999999999877 8999999999876666778999999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES 403 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~ 403 (419)
+|||.|.|..++..++.+..|.|+|||++.++++++||++.|+++.+...+....|+++.|.++.||++|+.+|+.+|.+
T Consensus 78 ~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~ 157 (162)
T cd04020 78 VWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEG 157 (162)
T ss_pred CCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEE
Confidence 99999999745566777778999999999999999999999999999888889999999999999999999999999999
Q ss_pred eeecc
Q psy12482 404 CIPLR 408 (419)
Q Consensus 404 w~~l~ 408 (419)
..|||
T Consensus 158 ~~~~~ 162 (162)
T cd04020 158 TLPLR 162 (162)
T ss_pred EEecC
Confidence 99996
No 7
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.97 E-value=3.2e-30 Score=211.38 Aligned_cols=136 Identities=22% Similarity=0.418 Sum_probs=124.0
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~ 324 (419)
.|+|.+++.|.|. .++|.|+|++|+||+..+.+.+||||+|.+.+......+++|++++++.||+
T Consensus 1 ~G~i~~sl~y~~~---------------~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~ 65 (137)
T cd08409 1 LGDIQISLTYNPT---------------LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPS 65 (137)
T ss_pred CcEEEEEEEECCC---------------CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCc
Confidence 3999999999998 7999999999999999884489999999998765555678999999999999
Q ss_pred cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEee
Q psy12482 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESC 404 (419)
Q Consensus 325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w 404 (419)
|||.|.|. ++.+++.+.+|.|+|||++..+++++||++.|+... ..+|.+.+||.+|+.+|+++|++|
T Consensus 66 fnE~F~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~-----------~~~~~~~~hW~~~~~~p~~~i~~W 133 (137)
T cd08409 66 FNESFSFK-VTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFM-----------YARGKELEHWNDMLSKPKELIKRW 133 (137)
T ss_pred ccceEEEE-CCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcc-----------cCCChHHHHHHHHHhCCCCceeEE
Confidence 99999996 988899888999999999999999999999998754 467899999999999999999999
Q ss_pred eec
Q psy12482 405 IPL 407 (419)
Q Consensus 405 ~~l 407 (419)
|.|
T Consensus 134 H~l 136 (137)
T cd08409 134 HAL 136 (137)
T ss_pred EeC
Confidence 997
No 8
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.96 E-value=3.7e-29 Score=204.65 Aligned_cols=133 Identities=29% Similarity=0.450 Sum_probs=120.9
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCC-CCcceeecccccCCCCC
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDK-GRASKHKTGIIKRSTSP 323 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~-~~~~~~~T~~~~~t~nP 323 (419)
|+|.+++.|.+. .++|.|+|++|+||+.++.. .+||||++.+.+.. ....+++|++++++.||
T Consensus 2 ~ei~~sL~Y~~~---------------~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nP 66 (138)
T cd08408 2 PELLLGLEYNAL---------------TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDP 66 (138)
T ss_pred CeEEEEeEEcCC---------------CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCC
Confidence 899999999988 79999999999999998877 89999999998653 33457899999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCc-hhHHHHHHHHhCCCceEE
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG-KEILLWQQMMERPNFWVE 402 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g-~~~~~W~~l~~~p~~~i~ 402 (419)
+|||+|.|+ ++.+++.+.+|.|+|||++.++++++||++.|++.. .| .+.+||++|+.+|+++|+
T Consensus 67 vfnEtF~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~-------------~~~~~~~hW~~~l~~~~~~v~ 132 (138)
T cd08408 67 EFKETFVFQ-VALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS-------------SGEEEEEHWNEMKESKGQQVC 132 (138)
T ss_pred cEeeeEEEE-CCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcC-------------CCchHHHHHHHHHhCCCCEEe
Confidence 999999997 998899999999999999999999999999998843 44 578999999999999999
Q ss_pred eeeec
Q psy12482 403 SCIPL 407 (419)
Q Consensus 403 ~w~~l 407 (419)
+||.|
T Consensus 133 ~WH~l 137 (138)
T cd08408 133 RWHTL 137 (138)
T ss_pred Eeeec
Confidence 99998
No 9
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.96 E-value=7.3e-29 Score=203.08 Aligned_cols=134 Identities=30% Similarity=0.465 Sum_probs=120.2
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~ 324 (419)
|+|.+++.|.|. .+.|.|+|++|+||+.++.. .+||||+|.+.++.....+++|++++++.||+
T Consensus 1 G~i~~~l~y~~~---------------~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~ 65 (135)
T cd08410 1 GELLLSLNYLPS---------------AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPF 65 (135)
T ss_pred CcEEEEEEECCC---------------CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCc
Confidence 899999999998 79999999999999999877 89999999986654445678999999999999
Q ss_pred cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEee
Q psy12482 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESC 404 (419)
Q Consensus 325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w 404 (419)
|||+|.|. ++..++++..|.|+|||++..+++++||++.|+.. ...+.+.+||..|+.+|+.+|++|
T Consensus 66 wnE~F~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~------------~~~~~~~~~W~~l~~~~~~~~~~w 132 (135)
T cd08410 66 YNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQY------------SSGPSETNHWRRMLNSQRTAVEQW 132 (135)
T ss_pred cceeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCc------------cCCchHHHHHHHHHhCCCCEeeEe
Confidence 99999996 88888888889999999999999999999998763 344557899999999999999999
Q ss_pred eec
Q psy12482 405 IPL 407 (419)
Q Consensus 405 ~~l 407 (419)
|.|
T Consensus 133 h~l 135 (135)
T cd08410 133 HSL 135 (135)
T ss_pred ecC
Confidence 987
No 10
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.96 E-value=1.1e-28 Score=202.85 Aligned_cols=135 Identities=30% Similarity=0.515 Sum_probs=122.7
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
+|+|.+++.|.|. .+.|.|.|++|++|+.++.. .+||||+|.+.+.+....+++|.+++++.||
T Consensus 1 ~G~l~~~l~y~~~---------------~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP 65 (136)
T cd08402 1 LGDICFSLRYVPT---------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNP 65 (136)
T ss_pred CcEEEEEeEEcCC---------------CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCC
Confidence 4999999999998 79999999999999998887 8999999999765555567899999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES 403 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~ 403 (419)
+|||.|.|+ ++..+++...|.|+|||++.++++++||++.|++. ..|.+.+||.+|+.+|++++++
T Consensus 66 ~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~-------------~~~~~~~~W~~~~~~~~~~~~~ 131 (136)
T cd08402 66 YYNESFSFE-VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCN-------------ATGAELRHWSDMLASPRRPIAQ 131 (136)
T ss_pred cccceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCc-------------cCChHHHHHHHHHhCCCCeeeE
Confidence 999999997 88777777789999999999999999999999984 3578899999999999999999
Q ss_pred eeecc
Q psy12482 404 CIPLR 408 (419)
Q Consensus 404 w~~l~ 408 (419)
||.|+
T Consensus 132 wh~~~ 136 (136)
T cd08402 132 WHTLQ 136 (136)
T ss_pred EEEcC
Confidence 99985
No 11
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.96 E-value=2.7e-28 Score=200.57 Aligned_cols=135 Identities=33% Similarity=0.568 Sum_probs=122.0
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
+|+|.++++|.+. .+.|.|+|++|+||+.++.. .+||||+|.+.+.+....+++|++++++.||
T Consensus 1 ~G~l~~sl~y~~~---------------~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P 65 (136)
T cd08405 1 RGELLLSLCYNPT---------------ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNP 65 (136)
T ss_pred CcEEEEEEEEcCC---------------CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCC
Confidence 4999999999988 79999999999999998877 8999999999765444567899999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES 403 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~ 403 (419)
+|||.|.|. ++.+++.+..|.|+|||++.++++++||++.|++.. .|.+.+||.+|+.+|+++|++
T Consensus 66 ~wne~F~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~-------------~~~~~~~w~~~~~~~~~~~~~ 131 (136)
T cd08405 66 VFNESFIFN-IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKS-------------GGLELKHWKDMLSKPRQPVAQ 131 (136)
T ss_pred cccceEEEe-CCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCcc-------------CCchHHHHHHHHhCCCCchhE
Confidence 999999996 877777777899999999999999999999999965 378899999999999999999
Q ss_pred eeecc
Q psy12482 404 CIPLR 408 (419)
Q Consensus 404 w~~l~ 408 (419)
||.|.
T Consensus 132 wh~l~ 136 (136)
T cd08405 132 WHRLK 136 (136)
T ss_pred EEecC
Confidence 99984
No 12
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.96 E-value=2.3e-28 Score=190.56 Aligned_cols=118 Identities=21% Similarity=0.338 Sum_probs=107.6
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL 188 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l 188 (419)
|+|+++|+|++..+.|+|+|++|++|+ . . |.+||||++++.++.+ ..+++|+++++|+||+|||+|.|.|+.+++
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~-g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l 75 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS-V--D-AGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEES 75 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC-C--C-CCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHh
Confidence 589999999999999999999999999 3 2 5689999999987544 347899999999999999999999999999
Q ss_pred cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecC
Q psy12482 189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL 231 (419)
Q Consensus 189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L 231 (419)
.+.+|.|+|||+|.++++++||++.++++++....+..+|.+|
T Consensus 76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999999999999999998777788889765
No 13
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.95 E-value=7.5e-28 Score=197.29 Aligned_cols=132 Identities=31% Similarity=0.626 Sum_probs=120.1
Q ss_pred ceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCcc
Q psy12482 247 ELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW 325 (419)
Q Consensus 247 ~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~w 325 (419)
.|+|++.|.+. .+.|.|+|++|+||++++.. .+||||+|.+.++.....+++|++++++.||+|
T Consensus 1 ~i~~~l~y~~~---------------~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~w 65 (133)
T cd08384 1 KILVSLMYNTQ---------------RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEF 65 (133)
T ss_pred CEEEEEEEcCC---------------CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCc
Confidence 47899999988 79999999999999999887 899999999987655667789999999999999
Q ss_pred ccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeee
Q psy12482 326 NHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCI 405 (419)
Q Consensus 326 ne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~ 405 (419)
||+|.|+ ++..++....|.|+|||++..+++++||++.|+++ ..|.+..||++|+.+|+++|++||
T Consensus 66 ne~f~f~-~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~-------------~~~~~~~~W~~~l~~~~~~~~~wh 131 (133)
T cd08384 66 NEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN-------------AKGERLRHWLDCLKNPDKKIEAWH 131 (133)
T ss_pred ccEEEEE-CCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecC-------------CCCchHHHHHHHHhCCCCChheee
Confidence 9999996 87777777889999999999999999999999985 367788999999999999999999
Q ss_pred ec
Q psy12482 406 PL 407 (419)
Q Consensus 406 ~l 407 (419)
.|
T Consensus 132 ~l 133 (133)
T cd08384 132 TL 133 (133)
T ss_pred cC
Confidence 87
No 14
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.95 E-value=1.1e-27 Score=196.43 Aligned_cols=133 Identities=28% Similarity=0.471 Sum_probs=120.5
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~ 324 (419)
|+|.+++.|.+. .+.|+|+|++|++|++++.. .+||||+|.+.+.+....+++|.+++++.||+
T Consensus 1 g~l~~~~~y~~~---------------~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~ 65 (134)
T cd08403 1 GELMFSLCYLPT---------------AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPT 65 (134)
T ss_pred CeEEEEEEEcCC---------------CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCc
Confidence 899999999998 79999999999999999987 89999999997655556678999999999999
Q ss_pred cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEee
Q psy12482 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESC 404 (419)
Q Consensus 325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w 404 (419)
|||.|.|. ++...+....|.|+|||++.++++++||++.|++. ..|.+..||.+|+.+|++++++|
T Consensus 66 wne~f~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~-------------~~~~~~~~w~~~~~~~~~~~~~w 131 (134)
T cd08403 66 YNEALVFD-VPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN-------------ADGQGREHWNEMLANPRKPIAQW 131 (134)
T ss_pred ccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC-------------CCCchHHHHHHHHHCCCCeeeEe
Confidence 99999996 87777777779999999999999999999999874 45677899999999999999999
Q ss_pred eec
Q psy12482 405 IPL 407 (419)
Q Consensus 405 ~~l 407 (419)
|.|
T Consensus 132 h~~ 134 (134)
T cd08403 132 HQL 134 (134)
T ss_pred ecC
Confidence 987
No 15
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=234.06 Aligned_cols=244 Identities=23% Similarity=0.298 Sum_probs=183.0
Q ss_pred ccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEE
Q psy12482 119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVW 198 (419)
Q Consensus 119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~ 198 (419)
...|.++|.|..|.+|...... +.+|||++|.+.. ..+++|-....+.||+||+.....+.. ....|.+.++
T Consensus 708 ~pIg~irv~v~~andl~n~i~g-~~~dPya~v~~n~----~~k~rti~~~~~~npiw~~i~Yv~v~s---k~~r~~l~~~ 779 (1227)
T COG5038 708 TPIGAIRVSVRKANDLRNEIPG-GKSDPYATVLVNN----LVKYRTIYGSSTLNPIWNEILYVPVTS---KNQRLTLECM 779 (1227)
T ss_pred CccceEEEEeehhhcccccccC-cccccceEEEecc----eeEEEEecccCccccceeeeEEEEecC---CccEEeeeee
Confidence 3678999999999999977665 8999999999953 457899999999999999987777644 2346999999
Q ss_pred ecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhh----hhhccccceEEEEEEeCCCCCccccc---------
Q psy12482 199 HSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILD----ELICSKGELIIGLKFVPPEDSSLSSA--------- 265 (419)
Q Consensus 199 d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~----~~~~~~G~l~l~l~~~~~~~~~~~~~--------- 265 (419)
++...+.|..||++.+++.++....+......-........ .....+|.+.+.+.|.|........+
T Consensus 780 ~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~ 859 (1227)
T COG5038 780 DYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSS 859 (1227)
T ss_pred cchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhh
Confidence 99999999999999999998755333322221111111000 01345577777777766533210000
Q ss_pred --------------------------------------------------------------------------------
Q psy12482 266 -------------------------------------------------------------------------------- 265 (419)
Q Consensus 266 -------------------------------------------------------------------------------- 265 (419)
T Consensus 860 e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd 939 (1227)
T COG5038 860 EKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDD 939 (1227)
T ss_pred HHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy12482 266 -------------------------------------------------------------------------------- 265 (419)
Q Consensus 266 -------------------------------------------------------------------------------- 265 (419)
T Consensus 940 ~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v 1019 (1227)
T COG5038 940 ASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLV 1019 (1227)
T ss_pred CCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEE
Confidence
Q ss_pred ------------cccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEc
Q psy12482 266 ------------KKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332 (419)
Q Consensus 266 ------------~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~ 332 (419)
....-...|.|.|.+..|.||+..+.+ .+||||++.+ +..+.++|+++++|+||+|||.+..+
T Consensus 1020 ~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~l----n~k~vyktkv~KktlNPvwNEe~~i~ 1095 (1227)
T COG5038 1020 QVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFL----NEKSVYKTKVVKKTLNPVWNEEFTIE 1095 (1227)
T ss_pred EEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEe----cceecccccchhccCCCCccccceEe
Confidence 000112378999999999999999999 8999999999 66668999999999999999999875
Q ss_pred ccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCcee
Q psy12482 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLV 377 (419)
Q Consensus 333 ~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~ 377 (419)
|. .-....++|.|+|||...+++.||.+.|+|..+..++...
T Consensus 1096 -v~--~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n 1137 (1227)
T COG5038 1096 -VL--NRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTN 1137 (1227)
T ss_pred -ee--ccccceEEEEEeecccCCCccccccccccHhhcCcCCccc
Confidence 43 3334669999999999999999999999999876555443
No 16
>KOG1013|consensus
Probab=99.95 E-value=2.8e-29 Score=220.86 Aligned_cols=276 Identities=25% Similarity=0.342 Sum_probs=239.9
Q ss_pred eeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cc
Q psy12482 106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LT 184 (419)
Q Consensus 106 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~ 184 (419)
...|.+.+.+.|+.....+..+|.+|++|.+++.+ +..|||++..+++...+..+.+|++..+++||.|||+-.+. +.
T Consensus 77 t~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~-~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~ 155 (362)
T KOG1013|consen 77 TTLGALEFELLYDSESRMLDTTLDRAKGLKPMDIN-GLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGIT 155 (362)
T ss_pred hhccchhhhhhhhhhhhhcceeechhcccchhhhh-hhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccc
Confidence 34799999999999999999999999999999998 99999999999998888888999999999999999988777 55
Q ss_pred cCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCC--CceecCccc-cchhhhhhccccceEEEEEEeCCCCCc
Q psy12482 185 LEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPS--PKCYPLQER-SEILDELICSKGELIIGLKFVPPEDSS 261 (419)
Q Consensus 185 ~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~--~~w~~L~~~-~~~~~~~~~~~G~l~l~l~~~~~~~~~ 261 (419)
.+......+++.|+|.+.+..++++|+..+++..+...+.. ..|+.-.-+ .......-..+|+|.+++.|...
T Consensus 156 ~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~---- 231 (362)
T KOG1013|consen 156 DDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSST---- 231 (362)
T ss_pred cchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcC----
Confidence 66666678899999999999999999999998877655432 345443222 11112224678999999999877
Q ss_pred cccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccc
Q psy12482 262 LSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS 340 (419)
Q Consensus 262 ~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~ 340 (419)
...+.|+++++..|..+|.+ .+||||++.+.++.+...+++|.+.++|.+|+||+.|.|. +.+.+|.
T Consensus 232 -----------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~-i~pgdLa 299 (362)
T KOG1013|consen 232 -----------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD-IGPGDLA 299 (362)
T ss_pred -----------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc-CCccchh
Confidence 78999999999999999999 9999999999988888889999999999999999999995 9999999
Q ss_pred cCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCCC
Q psy12482 341 ERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411 (419)
Q Consensus 341 ~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~~ 411 (419)
...+.|.|||.+..+..+.+|-+.+++ ...++...||.+.+-.+...+..||-|....
T Consensus 300 ~~kv~lsvgd~~~G~s~d~~GG~~~g~-------------~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~~ 357 (362)
T KOG1013|consen 300 YKKVALSVGDYDIGKSNDSIGGSMLGG-------------YRRGEVHKHWGRCLFDQDANFERSSGLETEG 357 (362)
T ss_pred cceEEEeecccCCCcCccCCCcccccc-------------cccchhhcCcccccccccccccccccccccc
Confidence 999999999999988899999998876 5688999999999999999999999987654
No 17
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.95 E-value=3.5e-27 Score=193.82 Aligned_cols=134 Identities=30% Similarity=0.468 Sum_probs=121.3
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
+|+|.++++|.+. .+.|.|+|++|+||+.++.. .+||||++.+.+++....+++|.+++++.||
T Consensus 1 ~G~l~~~l~y~~~---------------~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP 65 (136)
T cd08404 1 RGELLLSLCYQPT---------------TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNP 65 (136)
T ss_pred CCeEEEEEEEeCC---------------CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCC
Confidence 4999999999987 78999999999999999877 8999999999766544567899999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES 403 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~ 403 (419)
+|||+|.|. ++..++....|.|+|||++.++++++||++.|++.. .+.+..||.+|...|+++|++
T Consensus 66 ~w~e~F~f~-v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-------------~~~~~~~w~~l~~~~~~~i~~ 131 (136)
T cd08404 66 VFNESFVFD-IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-------------SGSGGHHWKEVCNPPRRQIAE 131 (136)
T ss_pred ccCceEEEE-CCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC-------------CCchHHHHHHHHhCCCCeeeE
Confidence 999999996 887777777899999999999999999999999853 577899999999999999999
Q ss_pred eeec
Q psy12482 404 CIPL 407 (419)
Q Consensus 404 w~~l 407 (419)
||.|
T Consensus 132 Wh~l 135 (136)
T cd08404 132 WHML 135 (136)
T ss_pred EEec
Confidence 9997
No 18
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.95 E-value=6.5e-27 Score=188.87 Aligned_cols=125 Identities=56% Similarity=0.941 Sum_probs=115.2
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
+|+|.++|.|.+..+.|.|+|++|+||++++...|.+||||++++.++.....++||++++++.||+|||+|.|.++.++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~ 80 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence 49999999999999999999999999999886437899999999998876666789999999999999999999998888
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ 232 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~ 232 (419)
+....|.|+|||++.++++++||++.++|.++...+....||+|+
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 888899999999999999999999999999998888888999984
No 19
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.95 E-value=1.2e-26 Score=187.01 Aligned_cols=124 Identities=52% Similarity=0.951 Sum_probs=114.9
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL 188 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l 188 (419)
|+|++++.|.+..+.|.|.|++|+||+..+...+.+||||++++.+++.+..++||++++++.||+|||+|.|.++.+++
T Consensus 2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l 81 (125)
T cd04029 2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQL 81 (125)
T ss_pred cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHh
Confidence 99999999999999999999999999988754478999999999988766667899999999999999999999988888
Q ss_pred cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482 189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ 232 (419)
Q Consensus 189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~ 232 (419)
.+..|.|.|||++.++++++||++.++|.++...+....|++|+
T Consensus 82 ~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 82 ETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 88899999999999999999999999999999999999999984
No 20
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.94 E-value=8.6e-27 Score=181.70 Aligned_cols=118 Identities=25% Similarity=0.385 Sum_probs=103.9
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCcc
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW 325 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~w 325 (419)
|+|+++++|.|. .++|.|+|++|+||+ .+ +.+||||+|.+.+..+ ..+++|+++++|+||+|
T Consensus 1 ~~l~fsL~Y~~~---------------~~~L~V~vikA~~L~-~~-g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvf 62 (118)
T cd08677 1 PKLHYSLSYDKQ---------------KAELHVNILEAENIS-VD-AGCECYISGCVSVSEG-QKEAQTALKKLALHTQW 62 (118)
T ss_pred CeEEEEEEEcCc---------------CCEEEEEEEEecCCC-CC-CCCCeEEEEEEcCCcC-ccEEEcceecCCCCCcc
Confidence 589999999998 899999999999998 33 3699999999986543 45789999999999999
Q ss_pred ccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHH
Q psy12482 326 NHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQM 393 (419)
Q Consensus 326 ne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l 393 (419)
||+|.|. ++.+++...+|.|+|||+|.++++++||++.++++++ .-+.+.+||.++
T Consensus 63 nE~f~F~-v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~-----------~~~~~~~~W~~~ 118 (118)
T cd08677 63 EEELVFP-LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADV-----------SMMLGAAQWVDL 118 (118)
T ss_pred ccEEEEe-CCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccc-----------cCCccccchhcC
Confidence 9999996 9999999999999999999999999999999999873 345567788754
No 21
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.94 E-value=2.1e-26 Score=184.04 Aligned_cols=121 Identities=29% Similarity=0.415 Sum_probs=111.5
Q ss_pred EEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCC-CCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482 110 EVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK-AGKRKTRVKKHTLSPVFDEVLKFQLTLEDL 188 (419)
Q Consensus 110 ~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~l 188 (419)
+|.++|.|++..+.|.|+|++|+||+.++.. +.+||||+++++|+..+ ..++||++++++.||+|||+|.|.++.+++
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~-~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L 80 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIP-ENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKL 80 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccC-CCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHh
Confidence 7999999999999999999999999999876 88999999999998765 357899999999999999999999999999
Q ss_pred cccEEEEEEEecCCCCCCceeEEEEEeCcccccCC-CCCceecC
Q psy12482 189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD-PSPKCYPL 231 (419)
Q Consensus 189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~-~~~~w~~L 231 (419)
.+.+|.|+||+++..+++++||++.|+|+++.... ....||+|
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999999999999999999999999986665 46789876
No 22
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.94 E-value=3.5e-26 Score=184.54 Aligned_cols=125 Identities=49% Similarity=0.827 Sum_probs=113.4
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
.|+|.++|.|.+..+.|.|.|++|+||++++...|.+||||++++.|+.....++||++++++.||+|||+|.|.++.++
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL 80 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence 49999999999999999999999999999886337899999999998876666889999999999999999999998888
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCC---CCCceecCc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD---PSPKCYPLQ 232 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~---~~~~w~~L~ 232 (419)
+....|.|.|||.+.++++++||++.|+|.++.... ....||+|.
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 888899999999999889999999999999987653 567899873
No 23
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.94 E-value=2.3e-26 Score=186.83 Aligned_cols=124 Identities=27% Similarity=0.330 Sum_probs=109.6
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCC-CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTK-RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE 186 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~-~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~ 186 (419)
.|+|.++|+|.+..++|.|.|++|+||+.++.. .+.+||||+|++.+++++..++||++++++.||+|||+|.|.++.+
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 399999999999999999999999999998832 1448999999999888777889999999999999999999999999
Q ss_pred cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
++.+.+|.|+|||++.++++++||++.+++.. .+.+..+|..+..
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999999999999999999999999999975 3444566766543
No 24
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.94 E-value=5.8e-26 Score=182.22 Aligned_cols=119 Identities=41% Similarity=0.721 Sum_probs=110.0
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEc-ccCc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL-TLED 187 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v-~~~~ 187 (419)
|+|.++|.|. .+.|.|.|++|++|+..+ . +.+||||++++.++.....++||++++++.||+|||+|.|.+ +..+
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~-~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-G-SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-C-CCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 8999999999 799999999999999999 6 899999999999877666688999999999999999999997 6677
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecC
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL 231 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L 231 (419)
+....|.|+|||++.++++++||++.++|.++........||+|
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 88889999999999999999999999999998887778899987
No 25
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.94 E-value=1.5e-25 Score=183.24 Aligned_cols=125 Identities=29% Similarity=0.515 Sum_probs=111.0
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
.|+|.++|.| ..+.|.|.|++|+||++.+...|.+||||++++.+++.+..++||+++++++||+|||+|.|.+.
T Consensus 17 ~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~--- 91 (146)
T cd04028 17 MGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS--- 91 (146)
T ss_pred cceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc---
Confidence 7999999999 47899999999999998753227899999999999887667899999999999999999999987
Q ss_pred ccccEEEEEEE-ecCCCCCCceeEEEEEeCcccccCCCCCceecCccccch
Q psy12482 188 LECRTLWLSVW-HSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEI 237 (419)
Q Consensus 188 l~~~~l~i~v~-d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~ 237 (419)
+.+..|.|+|| |++.++++++||++.|+|+++........||+|.+....
T Consensus 92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL 142 (146)
T ss_pred CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence 56779999999 678888899999999999999888888999999876543
No 26
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.94 E-value=1.3e-25 Score=184.49 Aligned_cols=133 Identities=29% Similarity=0.503 Sum_probs=120.4
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~ 324 (419)
|+|.|+++|.+. .+.|.|.|++|+||+..+.. .+||||++.+.+.+....+++|+++.++.||.
T Consensus 1 G~i~~~l~y~~~---------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~ 65 (134)
T cd00276 1 GELLLSLSYLPT---------------AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPV 65 (134)
T ss_pred CeEEEEEEeeCC---------------CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCe
Confidence 899999999987 79999999999999998866 89999999998765555678999999999999
Q ss_pred cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEee
Q psy12482 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESC 404 (419)
Q Consensus 325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w 404 (419)
|||+|.|. ++...+....|.|+|||++..+++++||.+.|++++ .|.+.++|++|+++|+++|++|
T Consensus 66 wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-------------~~~~~~~W~~l~~~~~~~~~~w 131 (134)
T cd00276 66 FNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS-------------GGEELEHWNEMLASPRKPIARW 131 (134)
T ss_pred eeeeEEEE-CCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC-------------CCcHHHHHHHHHhCCCCceEEe
Confidence 99999996 877776677899999999998889999999999963 6778999999999999999999
Q ss_pred eec
Q psy12482 405 IPL 407 (419)
Q Consensus 405 ~~l 407 (419)
|.|
T Consensus 132 h~~ 134 (134)
T cd00276 132 HKL 134 (134)
T ss_pred eeC
Confidence 987
No 27
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.93 E-value=1.3e-25 Score=182.79 Aligned_cols=124 Identities=27% Similarity=0.382 Sum_probs=111.4
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
.|+|.++|.|.+..++|.|.|++|+||+..+.. |.+||||+|++.+++.+..++||++++++.||+|||+|.|.++.++
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~-g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGK-TTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCC-CCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 399999999999999999999999999999876 8999999999998877767789999999999999999999999999
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 234 (419)
+.+..|.|+|||++.++++++||++.|+... .+.+..+|..+...
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~ 124 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS 124 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence 9999999999999999999999999998764 34556778776543
No 28
>KOG2059|consensus
Probab=99.93 E-value=1.8e-25 Score=214.16 Aligned_cols=220 Identities=21% Similarity=0.368 Sum_probs=183.7
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
..|.|.|.+|+||++.+.. |..||||.|.+... ...+|.++.+++.|.|.|.|.|.++. ....|.|.|||.|
T Consensus 5 ~sl~vki~E~knL~~~~~~-g~~D~yC~v~lD~E----~v~RT~tv~ksL~PF~gEe~~~~iP~---~F~~l~fYv~D~d 76 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPS-GMRDCYCTVNLDQE----EVCRTATVEKSLCPFFGEEFYFEIPR---TFRYLSFYVWDRD 76 (800)
T ss_pred cceeEEEeecccCCCCCCC-CCcCcceEEeecch----hhhhhhhhhhhcCCccccceEEecCc---ceeeEEEEEeccc
Confidence 4689999999999999988 99999999999643 36899999999999999999999987 3558999999999
Q ss_pred CCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEe
Q psy12482 202 MFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIK 281 (419)
Q Consensus 202 ~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~ 281 (419)
+++|+.||.+.|.-+++....+.+.|+.|++-... ....|+|++.+.+.+... ...+...++
T Consensus 77 -~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~d----sEVQG~v~l~l~~~e~~~-------------~~~~~c~~L 138 (800)
T KOG2059|consen 77 -LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPD----SEVQGKVHLELALTEAIQ-------------SSGLVCHVL 138 (800)
T ss_pred -cccccccceeeeeHHHHhhCCCCccceeccccCCC----hhhceeEEEEEEeccccC-------------CCcchhhhh
Confidence 89999999999999988877888999999875443 456799999999987642 456777888
Q ss_pred ccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcc-------------ccccCeEEEEE
Q psy12482 282 EAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLE-------------ELSERCLELTV 348 (419)
Q Consensus 282 ~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~-------------~~~~~~l~i~V 348 (419)
.+|++.+...+.+|||++|...+.. +...++|.++++|.+|.|||.|+|. +..+ +.....|++++
T Consensus 139 ~~r~~~P~~~~~~dp~~~v~~~g~~-~~~~~~T~~~kkt~~p~~~Ev~~f~-~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 139 KTRQGLPIINGQCDPFARVTLCGPS-KLKEKKTKVKKKTTNPQFDEVFYFE-VTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhcccCceeCCCCCcceEEeecccc-hhhccccceeeeccCcchhhheeee-eccccccccchhcCcccCCceeeEEEee
Confidence 8888877666689999999986543 3444799999999999999999996 5443 11234589999
Q ss_pred EE-CCCCCCCceeEEEEEeCCC
Q psy12482 349 WD-HDRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 349 ~d-~~~~~~~~~lG~~~i~l~~ 369 (419)
|+ ++....+.|+|++.+++..
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~ 238 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDV 238 (800)
T ss_pred ccchhhhhhhhhceeEEeehhh
Confidence 98 6777779999999999865
No 29
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.93 E-value=6.5e-25 Score=175.41 Aligned_cols=122 Identities=17% Similarity=0.290 Sum_probs=106.0
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCC-CceeccEEEEEcccCc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTL-SPVFDEVLKFQLTLED 187 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~ 187 (419)
.+|+++|+|.|..++|+|.|++|+||+++... +.+||||+|++.+++++..++||+++++|. ||+|||+|.|+|+.++
T Consensus 1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~-~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~ 79 (135)
T cd08692 1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTP-LTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE 79 (135)
T ss_pred CeEEEEeeecCcCCeEEEEEEEccCCCcccCC-CCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh
Confidence 37999999999999999999999999998654 677999999999888888899999999995 6999999999998865
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
.+..|.|+|||++..+++++||++.++.++. ...+..+|.++..
T Consensus 80 -~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~ 123 (135)
T cd08692 80 -HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIA 123 (135)
T ss_pred -heeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHh
Confidence 4679999999999999999999999999762 3334577877643
No 30
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.93 E-value=7.8e-25 Score=176.34 Aligned_cols=122 Identities=22% Similarity=0.422 Sum_probs=112.9
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccC
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLE 186 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~ 186 (419)
.|+|.+++.|++..++|.|+|++|+||+..+.. +.+||||++.+.++.. .++||+++++ .||+|||+|.|. ++.+
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~-~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~ 77 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRG-GASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPE 77 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcC-CCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHH
Confidence 699999999999999999999999999999876 8899999999988764 4789999888 999999999998 8888
Q ss_pred cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
++.+..|.|.|||++.++++++||++.|+|+++........|++|++
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 78 ELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred HhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 88899999999999999999999999999999988888899999975
No 31
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.92 E-value=1.9e-24 Score=174.81 Aligned_cols=122 Identities=33% Similarity=0.606 Sum_probs=112.9
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
+|+|++++.|.+..+.|.|+|++|++|+..+.. +.+||||++++.+++. .+++|++++++.||+|||+|.|.++..+
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~ 78 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFS-GTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVFEVPPQE 78 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCC-CCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEEeCCHHH
Confidence 699999999999999999999999999999877 8899999999987653 3689999999999999999999998887
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ 232 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~ 232 (419)
+....|.|+|||++.++++++||++.++++++........|++|+
T Consensus 79 l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 79 LPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 777899999999999999999999999999998888889999986
No 32
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.92 E-value=1.6e-24 Score=174.87 Aligned_cols=121 Identities=34% Similarity=0.634 Sum_probs=106.6
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTS 322 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n 322 (419)
+|+|++++.|.+. .+.|.|+|++|+||++++.. .+||||+|.+.+......+++|++++++.|
T Consensus 1 ~G~i~~sl~y~~~---------------~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~n 65 (125)
T cd08393 1 QGSVQFALDYDPK---------------LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLN 65 (125)
T ss_pred CcEEEEEEEEECC---------------CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCC
Confidence 4999999999987 78999999999999999863 899999999987765566789999999999
Q ss_pred CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
|+|||+|.|+ ++..++....|.|+|||++.++++++||++.|+|+++...+....||+
T Consensus 66 P~~nE~f~f~-v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~ 123 (125)
T cd08393 66 PVFNETLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYP 123 (125)
T ss_pred CccCceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEE
Confidence 9999999997 888888888899999999999999999999999999654444455554
No 33
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.92 E-value=2.3e-24 Score=174.46 Aligned_cols=124 Identities=35% Similarity=0.570 Sum_probs=110.2
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEE-EcccC
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF-QLTLE 186 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f-~v~~~ 186 (419)
+|+|.+++.|.+..+.|+|+|++|+||+..+...+.+||||++++.++.. +++||++++++.||+|||+|.| .++..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~--~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC--ceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 69999999999999999999999999999876437899999999987653 3679999999999999999999 57777
Q ss_pred cccccEEEEEEEecCCCCCCceeEEEEEeCcccccC--CCCCceecCcc
Q psy12482 187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD--DPSPKCYPLQE 233 (419)
Q Consensus 187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~--~~~~~w~~L~~ 233 (419)
++.+..|.|.|||++.++++++||++.++|+++... .+.+.|.+|++
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 777778999999999999999999999999998776 56688999875
No 34
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.92 E-value=2.7e-24 Score=173.37 Aligned_cols=121 Identities=35% Similarity=0.586 Sum_probs=106.3
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCC-C-CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKS-N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTS 322 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~-~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n 322 (419)
.|+|++++.|.+. .+.|.|.|++|+||++.+. . .+||||+|.+.+++....+++|++++++.|
T Consensus 1 ~G~i~~sl~y~~~---------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~n 65 (125)
T cd04029 1 SGEILFSLSYDYK---------------TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTN 65 (125)
T ss_pred CcEEEEEEEEECC---------------CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCC
Confidence 3999999999988 7999999999999998765 3 899999999987766667889999999999
Q ss_pred CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
|+|||+|.|. ++..++....|.|+|||++.++++++||++.|+++.+...+....||.
T Consensus 66 P~wnE~f~f~-i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 123 (125)
T cd04029 66 PVYNETLKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLP 123 (125)
T ss_pred CcccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEE
Confidence 9999999997 888888888899999999999999999999999998655555555554
No 35
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.92 E-value=1.1e-24 Score=174.26 Aligned_cols=108 Identities=19% Similarity=0.347 Sum_probs=100.4
Q ss_pred ceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCC-cceeecccccCCCCCc
Q psy12482 247 ELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGR-ASKHKTGIIKRSTSPQ 324 (419)
Q Consensus 247 ~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~-~~~~~T~~~~~t~nP~ 324 (419)
+|.+++.|.+. .++|.|+|++|+||++++.. .+||||++.+.++..+ ..+++|++++++.||+
T Consensus 2 ~i~~sL~Y~~~---------------~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPv 66 (124)
T cd08680 2 QVQIGLRYDSG---------------DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPV 66 (124)
T ss_pred eEEEEEEECCC---------------CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCc
Confidence 68999999998 79999999999999998877 8999999999987654 3588999999999999
Q ss_pred cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
|||+|.|+ ++.+++.+.+|.|+|||++.++++++||.+.|+|+++
T Consensus 67 fnE~F~f~-v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 67 FNEVFRVP-ISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred cccEEEEE-CCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 99999997 9999999999999999999999999999999999995
No 36
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.92 E-value=5.7e-24 Score=172.94 Aligned_cols=124 Identities=39% Similarity=0.717 Sum_probs=113.6
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
+|+|.++|.|.+..+.|+|+|++|+||+..+.. +.+||||+|++.+++....+++|++++++.||+|||+|.|.+...+
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSS-DIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCC-CCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 699999999999999999999999999999986 8899999999987765566889999999999999999999998887
Q ss_pred ccccEEEEEEEecCCC--CCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482 188 LECRTLWLSVWHSDMF--GRNDFLGEVMMSLENKVFDDPSPKCYPLQ 232 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~--~~~~~iG~~~~~l~~~~~~~~~~~w~~L~ 232 (419)
+....|.|.|||.+.+ +++++||++.++|.++........||+|+
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 8778999999999875 68999999999999988888889999884
No 37
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.92 E-value=5.5e-24 Score=172.07 Aligned_cols=122 Identities=60% Similarity=1.025 Sum_probs=111.6
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCC-CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVD-TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
|+|.+++.|.+..+.|.|+|++|+||+..+ .. +.+||||++++.+++....+++|++++++.||+|||+|.|.+...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKK-KRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCC-CCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHH
Confidence 899999999999999999999999999988 55 7899999999987765445789999999999999999999998877
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecC
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL 231 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L 231 (419)
+....|.|+|||++.++++++||++.++|+++........||+|
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 77789999999999999999999999999999877788999986
No 38
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.92 E-value=6.3e-24 Score=171.81 Aligned_cols=122 Identities=37% Similarity=0.658 Sum_probs=111.8
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
+|+|.+++.|.+..+.|.|+|++|+||+..+.. +.+||||++++.++.. .+++|++++++.||+|||+|.|.++..+
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTFKVPYSE 78 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCC-CCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEEeCCHHH
Confidence 699999999999999999999999999999877 8899999999987653 3789999999999999999999998777
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ 232 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~ 232 (419)
+....|.|+|||++.++++++||++.++++++..+....+|++|.
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 79 LGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 777799999999999999999999999999988877889999985
No 39
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.92 E-value=4.5e-24 Score=171.26 Aligned_cols=118 Identities=32% Similarity=0.691 Sum_probs=103.6
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~ 324 (419)
|+|.+++.|. .+.|.|.|++|+||+.++ + .+||||+|.+.+......+++|++++++.||+
T Consensus 2 G~l~~~l~y~-----------------~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~ 63 (122)
T cd08381 2 GQVKLSISYK-----------------NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPT 63 (122)
T ss_pred CeEEEEEEEe-----------------CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCC
Confidence 9999999998 388999999999999999 6 99999999998776666789999999999999
Q ss_pred cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
|||+|.|+.++..++....|.|+|||++.++++++||++.|+|+++...+....||.
T Consensus 64 wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~ 120 (122)
T cd08381 64 FNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYP 120 (122)
T ss_pred cccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEE
Confidence 999999973377788888899999999999999999999999999765544455554
No 40
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.91 E-value=8.5e-24 Score=168.65 Aligned_cols=118 Identities=24% Similarity=0.420 Sum_probs=104.2
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL 188 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l 188 (419)
|+|.+++.| ..+.|.|+|++|+||++++ . +.+||||+++++|+..+..++||++++++.||+|||+|.|.++.+++
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~-g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~ 76 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-S-GTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDY 76 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-C-CCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHh
Confidence 788888888 5799999999999999988 5 88999999999988766667899999999999999999999987766
Q ss_pred cccEEEEEEEecCCCC-CCceeEEEEEeCcccccCCCCCceecC
Q psy12482 189 ECRTLWLSVWHSDMFG-RNDFLGEVMMSLENKVFDDPSPKCYPL 231 (419)
Q Consensus 189 ~~~~l~i~v~d~~~~~-~~~~iG~~~~~l~~~~~~~~~~~w~~L 231 (419)
.. .|.|+|||.+..+ ++++||++.|++.++..+.....||.|
T Consensus 77 ~~-~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 77 QK-RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CC-EEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 54 6889999998765 478999999999998877778899976
No 41
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.91 E-value=1.2e-23 Score=169.73 Aligned_cols=109 Identities=31% Similarity=0.507 Sum_probs=101.0
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCC--CCCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKS--NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~--~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
|+|.+++.|.+. .++|.|+|++|+||++++. +.+||||++.+.++.....++||++++++.||
T Consensus 2 G~i~~sl~Y~~~---------------~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nP 66 (128)
T cd08392 2 GEIEFALHYNFR---------------TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNP 66 (128)
T ss_pred cEEEEEEEEeCC---------------CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCC
Confidence 999999999998 7999999999999999885 38999999999887666668899999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
+|||+|.|+ ++..++....|.|.|||++.++++++||++.|+|+++
T Consensus 67 vfNE~F~f~-v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~ 112 (128)
T cd08392 67 VFNETLKYV-VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADW 112 (128)
T ss_pred ccceEEEEE-cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCc
Confidence 999999997 8888888889999999999999999999999999985
No 42
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.91 E-value=2.1e-23 Score=169.19 Aligned_cols=123 Identities=41% Similarity=0.714 Sum_probs=108.5
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEc-ccC
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL-TLE 186 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v-~~~ 186 (419)
.|+|.++|.|.+..+.|.|+|++|++|+..+.. +.+||||+|++.+++....+++|++++++.||+|||+|.|.+ ...
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDG-SLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCC-CCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 699999999999999999999999999999877 889999999998765555678999999999999999999984 445
Q ss_pred cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482 187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ 232 (419)
Q Consensus 187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~ 232 (419)
++....|.|+|||++..+++++||++.++|.+ ........||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~-~~~~~~~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLAD-ALLDDEPHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccc-ccccCCcceEECc
Confidence 66677999999999998899999999999998 3444557899985
No 43
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.91 E-value=3.7e-24 Score=175.43 Aligned_cols=125 Identities=25% Similarity=0.361 Sum_probs=111.7
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
.|+|.++|.|.+..++|.|.|++|+||+..+ . +.+||||+|++.+++....+++|++++++.||+|||+|.|.++.++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~-~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-H-AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-C-CCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 4999999999999999999999999999988 5 7799999999998766556789999999999999999999999888
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 234 (419)
+....|.|+||+.+..+++++||++.++......+.+.++|..+...
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 98889999999999888999999999997665556667888887543
No 44
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.91 E-value=5.8e-24 Score=173.98 Aligned_cols=123 Identities=26% Similarity=0.433 Sum_probs=108.1
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCC-CCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK-SKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
|+|.++|.|++..++|.|+|++|+||+.++.. +.+||||++++.++. ....++||++++++.||+|||+|.|.++.++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~-~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~ 80 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMN-KAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQ 80 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccC-CCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHH
Confidence 79999999999999999999999999999887 889999999999753 3345689999999999999999999999999
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
+.+..|.|+|||++.++++++||++.+++... ...+..+|+.+..
T Consensus 81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~-~~~~~~hW~~~l~ 125 (138)
T cd08408 81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS-GEEEEEHWNEMKE 125 (138)
T ss_pred hCccEEEEEEEECCCCCCCcEEEEEEECCcCC-CchHHHHHHHHHh
Confidence 99999999999999999999999999998753 2233467887754
No 45
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.91 E-value=3.3e-23 Score=169.49 Aligned_cols=128 Identities=27% Similarity=0.411 Sum_probs=107.5
Q ss_pred ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccC-CC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482 243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVK-SN-TVDAFCKAYLLPDKGRASKHKTGIIKRS 320 (419)
Q Consensus 243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~-~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t 320 (419)
...|+|.+++.|. .+.|.|+|++|+||++.+ .. .+||||++++.++.....++||++++++
T Consensus 15 ~~~G~l~lsl~y~-----------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kkt 77 (146)
T cd04028 15 PSMGDIQLGLYDK-----------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKT 77 (146)
T ss_pred CCcceEEEEEEeC-----------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCC
Confidence 3569999999993 589999999999999875 44 8999999999987666678999999999
Q ss_pred CCCccccEEEEcccCccccccCeEEEEEE-ECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCc
Q psy12482 321 TSPQWNHTVVYRDVSLEELSERCLELTVW-DHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNF 399 (419)
Q Consensus 321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~-d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~ 399 (419)
+||+|||+|.|+ ++ +.+..|.|+|| |++.++++++||++.|+|+.+. .+.
T Consensus 78 lnPvfNE~F~f~-v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~-------------------------~~~ 128 (146)
T cd04028 78 LDPLYQQQLVFD-VS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLD-------------------------LSN 128 (146)
T ss_pred CCCccCCeEEEE-Ec---CCCCEEEEEEEeCCCCCCCCceEEEEEEEccccc-------------------------CCC
Confidence 999999999997 65 56778999999 6888889999999999998731 122
Q ss_pred eEEeeeeccCCCCcCCC
Q psy12482 400 WVESCIPLRSSLEFSSP 416 (419)
Q Consensus 400 ~i~~w~~l~~~~~~~~~ 416 (419)
.+..|++|.++.+.-.|
T Consensus 129 ~~~~Wy~L~~~~~~~~~ 145 (146)
T cd04028 129 LVIGWYKLFPTSSLVDP 145 (146)
T ss_pred CceeEEecCCcccccCC
Confidence 36788888888776655
No 46
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.90 E-value=4.2e-23 Score=173.54 Aligned_cols=125 Identities=35% Similarity=0.575 Sum_probs=111.3
Q ss_pred eeEEEEEEEEEc------------cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCcee
Q psy12482 108 KGEVEFGLQYNY------------KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVF 175 (419)
Q Consensus 108 ~G~i~~~l~y~~------------~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~w 175 (419)
+|+|.++|.|.+ ..+.|.|+|++|+||+..+.. +.+||||++++.+++....++||++++++.||+|
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~-g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~W 79 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSG-GTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVW 79 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCC-CCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCC
Confidence 499999999999 458999999999999999876 8999999999987766666899999999999999
Q ss_pred ccEEEEE-cccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 176 DEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 176 ne~f~f~-v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
||+|.|. +..+++.+..|.|+|||++.++++++||++.+++.++........|+.+..
T Consensus 80 nE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 80 NHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9999998 445667777999999999999899999999999999887777788888754
No 47
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.90 E-value=4.5e-23 Score=167.14 Aligned_cols=123 Identities=33% Similarity=0.620 Sum_probs=110.5
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccC
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLE 186 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~ 186 (419)
+|+|++++.|.+..+.|.|.|++|++|+..+.. +.+||||++++.+++. .+.+|++++++.||+|||+|.|. ++.+
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~-~~~dpyv~v~~~~~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~ 78 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFS-GTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYE 78 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCC-CCCCceEEEEECCCCC--cceeeeeecCCCCCccceeEEEcccCHH
Confidence 699999999999999999999999999998877 7899999999976653 36899999999999999999998 4445
Q ss_pred cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
.+....|.|+|||++.++++++||++.+++.++........|+.|++
T Consensus 79 ~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 79 KLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 56667899999999999999999999999999988888899999874
No 48
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.90 E-value=5.2e-23 Score=166.31 Aligned_cols=122 Identities=32% Similarity=0.585 Sum_probs=111.1
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCC-CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVD-TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
|+|.+++.|.+..+.|.|.|++|++|+..+ .. +.+||||++++.+++.. .++|++++++.||+|||+|.|.++...
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~-~~~dpyV~v~l~~~~~~--~~~T~v~~~~~~P~wne~f~f~i~~~~ 77 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDV-AHCDPFVKVCLLPDERR--SLQSKVKRKTQNPNFDETFVFQVSFKE 77 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCC-CCCCcEEEEEEeeCCCC--ceEeeeEcCCCCCccceEEEEEcCHHH
Confidence 899999999999999999999999999988 55 78999999999876633 578999999999999999999998877
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
+....|.|.|||++..+++++||++.++|.++........|++|.+
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 7777999999999998889999999999999988888889999864
No 49
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.90 E-value=3e-23 Score=170.45 Aligned_cols=124 Identities=30% Similarity=0.449 Sum_probs=111.3
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
+|+|.++++|.+..+.|.|+|++|++|+..+.. |.+||||++++.+++....+++|++++++.||.|||+|.|.++..+
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~-g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVS-GLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccC-CCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 499999999999999999999999999999887 8999999999987765555789999999999999999999998877
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 234 (419)
+....|.|+|||++.++++++||++.+++.. ...+..+|++|...
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 7777999999999999999999999999987 35567889988654
No 50
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.90 E-value=1.3e-22 Score=164.29 Aligned_cols=109 Identities=26% Similarity=0.485 Sum_probs=96.7
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTS 322 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n 322 (419)
+|+|.+++.|.+. .+.|.|+|++|+||+..+.. .+||||+|.+.+.. ..++||++++++.|
T Consensus 2 ~G~l~~~l~y~~~---------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~--~~~~kT~v~~~t~n 64 (128)
T cd08388 2 LGTLFFSLRYNSE---------------KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK--EHKVKTRVLRKTRN 64 (128)
T ss_pred CeEEEEEEEEECC---------------CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc--CceeeccEEcCCCC
Confidence 5999999999988 79999999999999998753 88999999997543 34679999999999
Q ss_pred CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
|+|||+|.|..++..++.+..|.|+|||++.++++++||++.|+|+++
T Consensus 65 P~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l 112 (128)
T cd08388 65 PVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGA 112 (128)
T ss_pred CceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEecccc
Confidence 999999999447777777778999999999999999999999999873
No 51
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.90 E-value=3.7e-23 Score=169.31 Aligned_cols=124 Identities=25% Similarity=0.439 Sum_probs=107.7
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL 188 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l 188 (419)
|+|.++|.|.+..+.|.|.|++|++|+..+.. |.+||||++++.++.....+++|++++++.||+|||+|.|.++.+++
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~-g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l 79 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMS-QGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEEL 79 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCC-CCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHh
Confidence 89999999999999999999999999999887 88999999999766554557899999999999999999999988888
Q ss_pred cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482 189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234 (419)
Q Consensus 189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 234 (419)
.+..|.|+|||++..+++++||++.|+.... ......+|+.|.+.
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~-~~~~~~~W~~l~~~ 124 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS-GPSETNHWRRMLNS 124 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcCccC-CchHHHHHHHHHhC
Confidence 8789999999999999999999999876442 22235778887654
No 52
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.89 E-value=5.6e-23 Score=168.92 Aligned_cols=124 Identities=28% Similarity=0.502 Sum_probs=109.8
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
+|+|.+++.|.+..+.|.|.|++|++|+.++.. +.+||||+|++.+++....+++|++++++.||.|||+|.|.++.++
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCC-CCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 499999999999999999999999999999887 8899999999987665556789999999999999999999998877
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 234 (419)
+....|.|+|||++.++++++||++.+++... +.+..+|+++...
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 77779999999999999999999999999763 4556788887544
No 53
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.89 E-value=6e-23 Score=168.71 Aligned_cols=124 Identities=31% Similarity=0.548 Sum_probs=108.7
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
+|+|.++|+|.+..+.|.|+|++|+||+..+.. +.+||||+|++.+++....+++|++++++.||+|||+|.|.++.+.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~-g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDIN-GTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccC-CCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 499999999999999999999999999998876 8899999999986655455789999999999999999999988777
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 234 (419)
+.+..|.|+|||++.++++++||++.+++.+. +....+|++|...
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 77779999999999999999999999999874 4455678776543
No 54
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.89 E-value=2.3e-22 Score=162.61 Aligned_cols=119 Identities=31% Similarity=0.585 Sum_probs=103.1
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
+|+|++++.|.+. .+.|.|+|++|+||++++.. .+||||+|.+.+.+ ..+++|++++++.||
T Consensus 2 ~G~l~~sl~y~~~---------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~~P 64 (124)
T cd08387 2 RGELHFSLEYDKD---------------MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR--SNTKQSKIHKKTLNP 64 (124)
T ss_pred CCEEEEEEEECCC---------------CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC--CCcEeCceEcCCCCC
Confidence 5999999999997 79999999999999998877 89999999996543 346899999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
+|||.|.|. ++..++....|.|+|||++.++++++||++.|+++++...+....||.
T Consensus 65 ~wne~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~ 121 (124)
T cd08387 65 EFDESFVFE-VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRK 121 (124)
T ss_pred CcccEEEEe-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEE
Confidence 999999996 888788778899999999999999999999999998654444444443
No 55
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.89 E-value=1.1e-22 Score=166.62 Aligned_cols=123 Identities=29% Similarity=0.468 Sum_probs=108.6
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL 188 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l 188 (419)
|+|.+++.|.+..+.|+|+|++|++|+..+.. |.+||||+|++.+++.+..+++|++++++.||.|||+|.|.++.+.+
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~-g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~ 79 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDIT-GFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV 79 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccC-CCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence 89999999999999999999999999999887 88999999999876655567899999999999999999999987777
Q ss_pred cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482 189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234 (419)
Q Consensus 189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 234 (419)
....|.|+|||++..+++++||++.+++.. ...+..+|+++...
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~~ 123 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNA--DGQGREHWNEMLAN 123 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCC--CCchHHHHHHHHHC
Confidence 777899999999999999999999999873 34556778887543
No 56
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.89 E-value=3.3e-22 Score=162.52 Aligned_cols=121 Identities=26% Similarity=0.544 Sum_probs=105.2
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
+|+|.+++.|.+. .+.|.|+|++|+||+..+.. .+||||+|.+.+++....+++|++++++.||
T Consensus 2 ~G~l~~~l~y~~~---------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP 66 (127)
T cd04030 2 LGRIQLTIRYSSQ---------------RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNP 66 (127)
T ss_pred CeEEEEEEEEeCC---------------CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCC
Confidence 5999999999988 79999999999999999987 9999999999876555678999999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCC--CCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRL--TSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~--~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
+|||+|.|. ++..+++...|.|.|||++.+ +++++||++.|+++++..++....||.
T Consensus 67 ~wne~f~f~-i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~ 125 (127)
T cd04030 67 VFDETFEFP-VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYD 125 (127)
T ss_pred EECeEEEEe-cCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEE
Confidence 999999996 887888888899999999875 689999999999998644444444443
No 57
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=3.2e-22 Score=158.87 Aligned_cols=118 Identities=14% Similarity=0.277 Sum_probs=99.6
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccC-CCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKH-TLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
|.|.|+|++|++|+..+ . |.+||||++.+. ..+.+|+++.+ +.||+|||+|.|.+... ...|.|+|||+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~-g~sDPYv~i~lg-----~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~ 71 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-L-TRMDPYCRIRVG-----HAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDE 71 (121)
T ss_pred cEEEEEEEEccCCCcCC-C-CCCCceEEEEEC-----CEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeC
Confidence 78999999999988776 5 899999999995 34678999875 89999999999998653 24799999999
Q ss_pred CCCCCCceeEEEEEeCc-ccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 201 DMFGRNDFLGEVMMSLE-NKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 201 ~~~~~~~~iG~~~~~l~-~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
+.+++|++||++.+++. .+..++....|++|.+.... ...|+|+|+++|
T Consensus 72 d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~-----~~~g~i~l~l~y 121 (121)
T cd04016 72 RAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE-----DKEGMINLVFSY 121 (121)
T ss_pred CCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC-----CCceEEEEEEeC
Confidence 99999999999999996 45666678999999864432 355999999987
No 58
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.89 E-value=1.5e-22 Score=165.81 Aligned_cols=122 Identities=32% Similarity=0.567 Sum_probs=108.5
Q ss_pred EEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCccc
Q psy12482 110 EVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLE 189 (419)
Q Consensus 110 ~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~ 189 (419)
+|.++|.|.+..+.|.|+|++|++|+..+.. +.+||||+|++.+++.+..+++|++++++.||+|||+|.|.++..++.
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~-~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~ 79 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDAN-GYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLA 79 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCC-CCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhC
Confidence 4789999999999999999999999999887 889999999999876656678999999999999999999999887777
Q ss_pred ccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482 190 CRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234 (419)
Q Consensus 190 ~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 234 (419)
...|.|+|||++..+++++||++.+++.. .+....+|+++...
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 78999999999988899999999999975 33456789987654
No 59
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.88 E-value=4.2e-22 Score=160.42 Aligned_cols=119 Identities=20% Similarity=0.364 Sum_probs=103.2
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
.|+|.+++.|.+. .++|.|+|++|+||++.+.+ .+||||++.+.+.. ..+++|+++++ .||
T Consensus 2 ~G~l~~sl~Y~~~---------------~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~--~~~~kTkv~~~-~nP 63 (124)
T cd08389 2 CGDLDVAFEYDPS---------------ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK--KQRAKTKVQRG-PNP 63 (124)
T ss_pred CEEEEEEEEECCC---------------CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC--cceeecccccC-CCC
Confidence 4999999999998 79999999999999999877 88999999887653 35689999887 999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
+|||+|.|+.++..++.+.+|.|+|||++.++++++||++.|+|+++...+....||+
T Consensus 64 ~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~ 121 (124)
T cd08389 64 VFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLT 121 (124)
T ss_pred cccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEe
Confidence 9999999965788888889999999999999999999999999998654444445544
No 60
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.88 E-value=6.3e-22 Score=159.96 Aligned_cols=119 Identities=38% Similarity=0.661 Sum_probs=102.4
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccC-CC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVK-SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~-~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
|+|.+++.|.+. .+.|.|+|++|+||+.++ .. .+||||+|.+.+......+++|++++++.||
T Consensus 1 G~i~~~l~y~~~---------------~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P 65 (123)
T cd08521 1 GEIEFSLSYNYK---------------TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNP 65 (123)
T ss_pred CeEEEEEEEeCC---------------CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCC
Confidence 899999999987 799999999999999988 55 8999999999766544567899999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecc
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWM 380 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~ 380 (419)
+|||+|.|. ++..++....|.|+|||++.++++++||++.++|+++........||
T Consensus 66 ~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~ 121 (123)
T cd08521 66 VFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWY 121 (123)
T ss_pred cccceEEEe-CCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEE
Confidence 999999996 88777877889999999999999999999999999854333333443
No 61
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.88 E-value=7.7e-22 Score=159.58 Aligned_cols=108 Identities=31% Similarity=0.532 Sum_probs=97.5
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
.|+|.+++.|.+. .+.|.|+|++|+||+.++.. .+||||+|.+.++. ..+++|++++++.||
T Consensus 2 ~G~l~~~l~y~~~---------------~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP 64 (124)
T cd08385 2 LGKLQFSLDYDFQ---------------SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP 64 (124)
T ss_pred ccEEEEEEEEeCC---------------CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC--CCceecccCcCCCCC
Confidence 4999999999987 79999999999999998877 89999999997643 346899999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
+|||.|.|. ++..++....|.|+|||++.++++++||++.|+++++
T Consensus 65 ~wne~f~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~ 110 (124)
T cd08385 65 VFNETFTFK-VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV 110 (124)
T ss_pred ceeeeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcc
Confidence 999999997 7777777778999999999999999999999999885
No 62
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.88 E-value=6.1e-22 Score=163.15 Aligned_cols=127 Identities=35% Similarity=0.522 Sum_probs=102.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcc-------------cCccc
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLT-------------LEDLE 189 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~-------------~~~l~ 189 (419)
+|.|+|++|++|+. .+ |.+||||+|++.++..+..+++|++++++.||+|||+|.|.+. .+++.
T Consensus 1 kL~V~Vi~ArnL~~--~~-g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KN-GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CC-CCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccccc
Confidence 48999999999998 34 7899999999987655555789999999999999999999984 33455
Q ss_pred ccEEEEEEEecCCCCCCceeEEEEEeCcccccC-CCCCceecCccccchh------hhhhccccceEEEE
Q psy12482 190 CRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD-DPSPKCYPLQERSEIL------DELICSKGELIIGL 252 (419)
Q Consensus 190 ~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~-~~~~~w~~L~~~~~~~------~~~~~~~G~l~l~l 252 (419)
...|.|.|||++..+++++||++.|++.++... .....||+|.+..... .......|.|++.+
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 568999999999888999999999999998776 5678999998876544 22234556665543
No 63
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.88 E-value=7.6e-22 Score=159.99 Aligned_cols=110 Identities=37% Similarity=0.657 Sum_probs=98.4
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
.|+|.+++.|.+. .++|.|+|++|+||+.++.+ .+||||+|.+.+.+....+++|++++++.||
T Consensus 2 ~G~l~~~l~~~~~---------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP 66 (125)
T cd04031 2 TGRIQIQLWYDKV---------------TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNP 66 (125)
T ss_pred cEEEEEEEEEeCC---------------CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCC
Confidence 4999999999998 79999999999999999887 8999999999765555567899999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~ 369 (419)
+|||+|.|..+...++....|.|+|||++..+++++||++.++|++
T Consensus 67 ~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 67 EWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred ccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 9999999963455666677899999999999999999999999987
No 64
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.88 E-value=4.9e-22 Score=157.43 Aligned_cols=112 Identities=23% Similarity=0.294 Sum_probs=95.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeC--CCCCCCeeecccccCCCCceeccEEEEEcccC-cccccEEEEEEEe
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP--DKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE-DLECRTLWLSVWH 199 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~--~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~l~~~~l~i~v~d 199 (419)
+|+|.|++|++|+..+ . |.+||||+|++.. ...+.++++|++++++.||+|||+|.|.++.+ .+....|.|.|||
T Consensus 1 kL~V~Vi~A~~L~~~d-~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-T-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-C-CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence 4899999999999887 4 8899999999853 22333467999999999999999999999764 4667789999999
Q ss_pred cCCCCCCceeEEEEEeCcccccCCCCCceecCccccc
Q psy12482 200 SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSE 236 (419)
Q Consensus 200 ~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~ 236 (419)
++..+++++||++.+++.++...+....|++|.+...
T Consensus 79 ~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 79 YCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred ecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 9988889999999999999988888889999976543
No 65
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.88 E-value=5.8e-22 Score=160.61 Aligned_cols=120 Identities=27% Similarity=0.374 Sum_probs=100.6
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc---CcccccEEEEEEEec
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL---EDLECRTLWLSVWHS 200 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~l~~~~l~i~v~d~ 200 (419)
++|+|++|+||+..+.. |.+||||+|++. ..+++|++++++.||+|||+|.|.++. +++....|.|.|||+
T Consensus 1 ~~V~V~~A~~L~~~d~~-g~~dpYv~v~l~-----~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~ 74 (126)
T cd08682 1 VQVTVLQARGLLCKGKS-GTNDAYVIIQLG-----KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHR 74 (126)
T ss_pred CEEEEEECcCCcCCCCC-cCCCceEEEEEC-----CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEc
Confidence 57999999999998876 889999999995 346899999999999999999999876 334567999999999
Q ss_pred CCCCCCceeEEEEEeCcccc--cCCCCCceecCccccchhhhhhccccceEEEE
Q psy12482 201 DMFGRNDFLGEVMMSLENKV--FDDPSPKCYPLQERSEILDELICSKGELIIGL 252 (419)
Q Consensus 201 ~~~~~~~~iG~~~~~l~~~~--~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l 252 (419)
+.++++++||++.++|.++. .......||+|.+.... .....|+|+|++
T Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~---~~~~~Gei~l~~ 125 (126)
T cd08682 75 NLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGK---DDKERGEIEVDI 125 (126)
T ss_pred cccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCC---CccccceEEEEe
Confidence 99989999999999999986 45567899999864331 134569999876
No 66
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.88 E-value=4.6e-22 Score=158.62 Aligned_cols=107 Identities=24% Similarity=0.378 Sum_probs=93.0
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCcc
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW 325 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~w 325 (419)
|+|.+++.|. .+.|.|+|++|+||++++.+.+||||+|.+.++.....+++|++++++.||+|
T Consensus 1 G~l~l~~~~~-----------------~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~ 63 (119)
T cd08685 1 GQLKLSIEGQ-----------------NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLF 63 (119)
T ss_pred CEEEEEEEEc-----------------CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCcc
Confidence 7899999883 68999999999999999844899999999998766667889999999999999
Q ss_pred ccEEEEcccCccccccCeEEEEEEECCCCC-CCceeEEEEEeCCCCC
Q psy12482 326 NHTVVYRDVSLEELSERCLELTVWDHDRLT-SNEFLGGIRLNLGHGK 371 (419)
Q Consensus 326 ne~f~f~~v~~~~~~~~~l~i~V~d~~~~~-~~~~lG~~~i~l~~~~ 371 (419)
||+|.|+ ++..++.. .|.|+|||++..+ ++++||.+.|++.++.
T Consensus 64 nE~F~f~-v~~~~~~~-~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 64 HETFSFD-VNERDYQK-RLLVTVWNKLSKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred ccEEEEE-cChHHhCC-EEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence 9999996 77666644 5899999999875 4789999999998854
No 67
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.87 E-value=2.8e-21 Score=156.57 Aligned_cols=119 Identities=29% Similarity=0.487 Sum_probs=100.1
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
+|+|++++.|.+. .+.|.|.|++|+||+.++.. .+||||+|.+.+.. ..+++|++++++.||
T Consensus 2 ~G~l~~~l~y~~~---------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~--~~~~kT~v~~~t~~P 64 (125)
T cd08386 2 LGRIQFSVSYDFQ---------------ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK--KHKLETKVKRKNLNP 64 (125)
T ss_pred ccEEEEEEEECCC---------------CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC--CcceeeeeecCCCCC
Confidence 5999999999987 78999999999999998877 89999999986543 345899999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecc
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWM 380 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~ 380 (419)
+|||+|.|..++.+.+....|.|+|||++..+++++||++.|+++++...+....|+
T Consensus 65 ~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~ 121 (125)
T cd08386 65 HWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWK 121 (125)
T ss_pred ccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEE
Confidence 999999996345556666789999999999999999999999998854333333333
No 68
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.87 E-value=1.3e-21 Score=160.72 Aligned_cols=124 Identities=35% Similarity=0.524 Sum_probs=110.9
Q ss_pred eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL 188 (419)
Q Consensus 109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l 188 (419)
|+|.++++|.+..+.|.|.|++|++|+..+.. +.+||||++++.+++....+++|++++++.||.|||+|.|.++...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l 79 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGK-GLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQL 79 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCC-CCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHh
Confidence 89999999999999999999999999998876 78999999999877655557899999999999999999999988777
Q ss_pred cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482 189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS 235 (419)
Q Consensus 189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~ 235 (419)
....|.|+|||.+..+++++||++.+++++ ......+|++|....
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 677999999999988899999999999998 566678999987653
No 69
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.85 E-value=5.5e-21 Score=155.12 Aligned_cols=123 Identities=29% Similarity=0.426 Sum_probs=102.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc-CcccccEEEEEEEecC
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL-EDLECRTLWLSVWHSD 201 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~l~~~~l~i~v~d~~ 201 (419)
+|+|+|++|++|+..+.. +.+||||++++.+ .+++|++++++.||+|||.|.|.+.. ..+....|.|.|||.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~~-----~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~ 74 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQ-GSSSAYVELDFDG-----QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR 74 (127)
T ss_pred CeEEEEEEeeCCCCCCCC-CCcCcEEEEEECC-----EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCC
Confidence 489999999999999876 8899999999962 36799999999999999999999864 3344568999999998
Q ss_pred CCC-CCceeEEEEEeCcccc-cCCCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482 202 MFG-RNDFLGEVMMSLENKV-FDDPSPKCYPLQERSEILDELICSKGELIIGLKFV 255 (419)
Q Consensus 202 ~~~-~~~~iG~~~~~l~~~~-~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~ 255 (419)
.++ ++++||++.++++++. .......||+|..+... ...+|+|.|++.+.
T Consensus 75 ~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~----~~~~G~l~l~~~~~ 126 (127)
T cd04022 75 RSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLF----SRVRGEIGLKVYIT 126 (127)
T ss_pred CCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCC----CCccEEEEEEEEEc
Confidence 886 8999999999999986 34556889999865332 23569999998763
No 70
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.85 E-value=1.3e-20 Score=152.14 Aligned_cols=121 Identities=37% Similarity=0.527 Sum_probs=105.1
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccC
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLE 186 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~ 186 (419)
.|+|.+++.|.+..+.|+|+|++|++|+..+.. +.+||||++++.++.....+++|++++++.||.|||+|.|. +...
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDAN-GLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCC-CCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 499999999999999999999999999998876 78999999999876655567899999999999999999996 5555
Q ss_pred cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceec
Q psy12482 187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYP 230 (419)
Q Consensus 187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~ 230 (419)
++....|.|+|||++.. ++++||++.++++++........|+.
T Consensus 80 ~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 80 DIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred HhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 66667999999999988 89999999999999876655555544
No 71
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.85 E-value=6e-21 Score=151.23 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=85.5
Q ss_pred eEEEEEeccccccccCCCCCCcEEEEEEeC--CCCCcceeecccccCCCCCccccEEEEcccCcc-ccccCeEEEEEEEC
Q psy12482 275 SLHVLIKEAKSLCPVKSNTVDAFCKAYLLP--DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLE-ELSERCLELTVWDH 351 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~--~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~-~~~~~~l~i~V~d~ 351 (419)
+|+|+|++|+||+..+.+.+||||+|.+.+ ...+..+++|.++.+++||+|||+|.|. ++.+ .+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEEe
Confidence 589999999999988766899999999864 2233456799999999999999999996 6643 45667799999999
Q ss_pred CCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 352 DRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 352 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
+..+++++||++.|+++++..++....|+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~ 109 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLP 109 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEE
Confidence 988889999999999988644444334443
No 72
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.85 E-value=1.7e-20 Score=151.63 Aligned_cols=118 Identities=28% Similarity=0.495 Sum_probs=101.3
Q ss_pred cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccC-CC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVK-SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~-~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
|+|.+++.|.+. .+.|.|.|++|+||+.++ .. .+||||+|.+.+++ ...++|++++++.||
T Consensus 1 G~l~~~l~y~~~---------------~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~--~~~~~T~v~~~~~~P 63 (123)
T cd08390 1 GRLWFSVQYDLE---------------EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE--RRSLQSKVKRKTQNP 63 (123)
T ss_pred CEEEEEEEECCC---------------CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC--CCceEeeeEcCCCCC
Confidence 899999999988 799999999999999988 45 89999999987553 245789999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
+|||.|.|. ++...+....|.|+|||++..+++++||++.|+|+++........|++
T Consensus 64 ~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~ 120 (123)
T cd08390 64 NFDETFVFQ-VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRD 120 (123)
T ss_pred ccceEEEEE-cCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEe
Confidence 999999996 887777777899999999999899999999999998654444444544
No 73
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.85 E-value=2.6e-20 Score=152.19 Aligned_cols=112 Identities=35% Similarity=0.577 Sum_probs=99.5
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCC--CCCeeecccccCCCCceeccEEEEEccc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKS--KAGKRKTRVKKHTLSPVFDEVLKFQLTL 185 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~ 185 (419)
.|+|.++++|.+..+.|+|+|++|++|+..+.. +.+||||+|++.+... ...+++|++++++.||+|||+|.|.+..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~-g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSN-GSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCC-CCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 699999999999999999999999999998876 8899999999986542 2447899999999999999999999866
Q ss_pred Cc--ccccEEEEEEEecCCCCCCceeEEEEEeCcccc
Q psy12482 186 ED--LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKV 220 (419)
Q Consensus 186 ~~--l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~ 220 (419)
.. +....|.|+|||++.++++++||++.++|+++.
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 32 346689999999999988999999999999875
No 74
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=1.8e-20 Score=150.79 Aligned_cols=121 Identities=25% Similarity=0.406 Sum_probs=104.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM 202 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~ 202 (419)
+|+|+|++|++|+..+.. +.+||||++++.. ...++|++++++.||+|||.|.|.+.. + ...|.|+|||++.
T Consensus 1 ~L~v~v~~a~~L~~~d~~-g~~Dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~f~v~~--~-~~~l~~~v~D~d~ 72 (121)
T cd04042 1 QLDIHLKEGRNLAARDRG-GTSDPYVKFKYGG----KTVYKSKTIYKNLNPVWDEKFTLPIED--V-TQPLYIKVFDYDR 72 (121)
T ss_pred CeEEEEEEeeCCCCcCCC-CCCCCeEEEEECC----EEEEEeeeccCCCCCccceeEEEEecC--C-CCeEEEEEEeCCC
Confidence 489999999999999887 8999999999852 236899999999999999999999753 2 3589999999999
Q ss_pred CCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482 203 FGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVP 256 (419)
Q Consensus 203 ~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~ 256 (419)
.+++++||++.++++++........|++|.+.... ...|+|.|.++|.|
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~-----~~~G~l~l~~~~~~ 121 (121)
T cd04042 73 GLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD-----EDLGYISLVVTLTP 121 (121)
T ss_pred CCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc-----cCceEEEEEEEECC
Confidence 98999999999999998888888999999765431 34599999999876
No 75
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.84 E-value=2.1e-20 Score=149.83 Aligned_cols=117 Identities=23% Similarity=0.373 Sum_probs=99.0
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
|.|+|+|++|++|+..+.. +.+||||++++.. .+++|++++ ++.||+|||.|.|.+... ....|.|+|||+
T Consensus 1 g~L~V~v~~A~~L~~~~~~-~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~ 72 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKL-DKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDD 72 (118)
T ss_pred CEEEEEEEEccCCCCCCcC-CCCCceEEEEECC-----CccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeC
Confidence 5799999999999999876 8999999999963 357788765 579999999999998764 245899999999
Q ss_pred CCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 201 DMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 201 ~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
+..+ +++||++.+++.++.......+|++|.... ...|+|+++++|
T Consensus 73 ~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~-------~~~G~i~l~l~f 118 (118)
T cd08681 73 DKRK-PDLIGDTEVDLSPALKEGEFDDWYELTLKG-------RYAGEVYLELTF 118 (118)
T ss_pred CCCC-CcceEEEEEecHHHhhcCCCCCcEEeccCC-------cEeeEEEEEEEC
Confidence 8876 899999999999987766778999997643 245999999986
No 76
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.84 E-value=1.8e-20 Score=151.27 Aligned_cols=122 Identities=30% Similarity=0.466 Sum_probs=103.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM 202 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~ 202 (419)
+|+|+|++|++|+..+.. +.+||||+|++. ..+.+|++++++.||+|||+|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~-~~~DPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~ 72 (123)
T cd04025 1 RLRCHVLEARDLAPKDRN-GTSDPFVRVFYN-----GQTLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDL 72 (123)
T ss_pred CEEEEEEEeeCCCCCCCC-CCcCceEEEEEC-----CEEEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCC
Confidence 489999999999999876 789999999985 23579999999999999999999986643 4589999999999
Q ss_pred CCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEE
Q psy12482 203 FGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGL 252 (419)
Q Consensus 203 ~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l 252 (419)
.+++++||++.++++++........|+.|.+............|.|.+.+
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 73 VSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999999999998766667899999876655444566778888765
No 77
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.84 E-value=2.9e-20 Score=148.92 Aligned_cols=120 Identities=23% Similarity=0.365 Sum_probs=99.9
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|.|.|++|+||+..+...|.+||||+|++. + ...++|+++++|.||+|||+|.|.++.. ...|.|.|||++.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~--~~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~ 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--Q--EEVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVL 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--C--ccEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCC
Confidence 679999999999874323789999999994 1 2357999999999999999999999753 35899999999999
Q ss_pred CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
+++++||++.++++++........|++|++.... .+..|+|+++++|
T Consensus 75 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~----~~~~G~i~l~~~~ 121 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDAD----SEVQGKVHLELRL 121 (121)
T ss_pred CCCceEEEEEEEHHHccCCCCcEeeEEEEccCCC----CcccEEEEEEEEC
Confidence 9999999999999998777777899999875332 2246999998864
No 78
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=9.6e-20 Score=151.03 Aligned_cols=126 Identities=19% Similarity=0.191 Sum_probs=102.1
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccC-CCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKH-TLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM 202 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~ 202 (419)
|+|+|++|++|+..+.. |.+||||++++.. ++.+|+++.+ +.||+|||.|.|.+... ....|.|.|||++.
T Consensus 2 L~V~Vi~A~~L~~~d~~-g~sDPYV~v~l~~-----~~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~ 73 (150)
T cd04019 2 LRVTVIEAQDLVPSDKN-RVPEVFVKAQLGN-----QVLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVG 73 (150)
T ss_pred EEEEEEEeECCCCCCCC-CCCCeEEEEEECC-----EEeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecC
Confidence 78999999999999987 8999999999962 3678888876 69999999999998542 23589999999998
Q ss_pred CCCCceeEEEEEeCcccccC----CCCCceecCccccch--hhhhhccccceEEEEEEeCC
Q psy12482 203 FGRNDFLGEVMMSLENKVFD----DPSPKCYPLQERSEI--LDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 203 ~~~~~~iG~~~~~l~~~~~~----~~~~~w~~L~~~~~~--~~~~~~~~G~l~l~l~~~~~ 257 (419)
.+++++||++.++|+++... .....||+|...... ........|+|+|.++|.+.
T Consensus 74 ~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 74 PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 88899999999999997542 346899999876431 00113456999999999754
No 79
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.83 E-value=1.1e-19 Score=146.97 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=99.4
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
..|+|+|++|+||+.. +.+||||+|++.. .+..+|+++ ++.||.|||+|.|.+...++. .+.|.|||.+
T Consensus 4 ~~L~V~Vi~A~~L~~~----~~~DPYv~v~l~~----~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~--~l~v~v~d~~ 72 (126)
T cd08400 4 RSLQLNVLEAHKLPVK----HVPHPYCVISLNE----VKVARTKVR-EGPNPVWSEEFVFDDLPPDVN--SFTISLSNKA 72 (126)
T ss_pred eEEEEEEEEeeCCCCC----CCCCeeEEEEECC----EeEEEeecC-CCCCCccCCEEEEecCCCCcC--EEEEEEEECC
Confidence 4699999999999864 4689999999942 224678874 689999999999986554433 7889999999
Q ss_pred CCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 202 MFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 202 ~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
..+++++||++.++|+++..+.....|++|.+.... .....|+|+|+++|.+.
T Consensus 73 ~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~---~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 73 KRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPL---KGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCC---CCCcCcEEEEEEEEEcc
Confidence 999999999999999998877778899999876431 13456999999999864
No 80
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.83 E-value=9.2e-20 Score=149.35 Aligned_cols=124 Identities=31% Similarity=0.457 Sum_probs=102.3
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCC--CCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPD--KSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~--~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
|+|+|++|++|+..+.. +.+||||+|++.+. +....+++|++++++.||.|||+|.|.+... ...|.|+|||++
T Consensus 2 L~v~Vi~a~~L~~~d~~-~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~ 77 (133)
T cd04033 2 LRVKVLAGIDLAKKDIF-GASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDEN 77 (133)
T ss_pred EEEEEEEeECCCcccCC-CCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECC
Confidence 78999999999999876 88999999999753 2223357999999999999999999998653 347999999999
Q ss_pred CCCCCceeEEEEEeCcccccCCC------CCceecCccccchhhhhhccccceEEEEEEe
Q psy12482 202 MFGRNDFLGEVMMSLENKVFDDP------SPKCYPLQERSEILDELICSKGELIIGLKFV 255 (419)
Q Consensus 202 ~~~~~~~iG~~~~~l~~~~~~~~------~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~ 255 (419)
.++++++||++.+++.++....+ ...||+|.+.... ....|+|++++.|.
T Consensus 78 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~----~~~~G~l~~~~~~~ 133 (133)
T cd04033 78 RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK----SRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC----CcceeEEEEEEeeC
Confidence 99999999999999999876543 3589999865332 24569999999883
No 81
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.83 E-value=1.4e-19 Score=147.84 Aligned_cols=123 Identities=33% Similarity=0.595 Sum_probs=106.6
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED 187 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 187 (419)
+|+|.+++.|.. +.|+|+|++|++|+..+.. +.+||||+|.+.+.+....+++|++++++.||.|||+|.|.+...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~-~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~ 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPN-GLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCC-CCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh
Confidence 499999999987 8999999999999998876 7899999999986554456789999999999999999999976544
Q ss_pred ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482 188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS 235 (419)
Q Consensus 188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~ 235 (419)
....|.|+|||++..+++++||++.+++.++... ....||+|....
T Consensus 78 -~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 78 -KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred -cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 3458999999999888999999999999997643 778899997654
No 82
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=1.1e-19 Score=145.25 Aligned_cols=115 Identities=27% Similarity=0.437 Sum_probs=100.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM 202 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~ 202 (419)
.|+|.|++|++|+..+.. +.+||||++++. ..+++|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 1 ~~~V~v~~a~~L~~~~~~-~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~ 72 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDN-GLSDPYVKFRLG-----NEKYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDT 72 (116)
T ss_pred CEEEEEEEEECCCCCCCC-CCCCcEEEEEEC-----CEeEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCC
Confidence 378999999999999887 889999999995 2368999999999999999999997653 35689999999999
Q ss_pred CCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482 203 FGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFV 255 (419)
Q Consensus 203 ~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~ 255 (419)
.+++++||++.++|+++........|++|.+. .|+|++.+.|.
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~----------~G~~~~~~~~~ 115 (116)
T cd08376 73 GKKDEFIGRCEIDLSALPREQTHSLELELEDG----------EGSLLLLLTLT 115 (116)
T ss_pred CCCCCeEEEEEEeHHHCCCCCceEEEEEccCC----------CcEEEEEEEec
Confidence 88999999999999998877788899999764 29999988774
No 83
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.83 E-value=3.5e-19 Score=180.45 Aligned_cols=237 Identities=23% Similarity=0.331 Sum_probs=170.7
Q ss_pred cCCEEEEEEEeecCCCCCC--CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEE
Q psy12482 120 KQGALEIHVKQCKDLAPVD--TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSV 197 (419)
Q Consensus 120 ~~~~L~v~v~~a~~L~~~~--~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v 197 (419)
..|.|.|+|.+|++|...+ .. +..|||+.+....- ...||++++++.||+|||+|...+.. + ...|.++|
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~-~~vDpyit~~~~~r----~~gkT~v~~nt~nPvwNEt~Yi~lns--~-~d~L~Lsl 505 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTIN-GTVDPYITVTFSDR----VIGKTRVKKNTLNPVWNETFYILLNS--F-TDPLNLSL 505 (1227)
T ss_pred eeEEEEEEEeeccCccccccccc-CCCCceEEEEeccc----cCCccceeeccCCccccceEEEEecc--c-CCceeEEE
Confidence 4689999999999999887 44 78999999996421 23499999999999999998877643 2 34899999
Q ss_pred EecCCCCCCceeEEEEEeCcccccCCCC--------------------CceecCccccchhhh-----hh----------
Q psy12482 198 WHSDMFGRNDFLGEVMMSLENKVFDDPS--------------------PKCYPLQERSEILDE-----LI---------- 242 (419)
Q Consensus 198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~--------------------~~w~~L~~~~~~~~~-----~~---------- 242 (419)
||.+...+|+++|.+.++|..+...... .+||+..+....... ..
T Consensus 506 yD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl 585 (1227)
T COG5038 506 YDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTL 585 (1227)
T ss_pred EeccccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEe
Confidence 9998888999999999998865332110 123332111110000 00
Q ss_pred --------------------------------------------------------------------------------
Q psy12482 243 -------------------------------------------------------------------------------- 242 (419)
Q Consensus 243 -------------------------------------------------------------------------------- 242 (419)
T Consensus 586 ~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~l 665 (1227)
T COG5038 586 REVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDL 665 (1227)
T ss_pred eccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHh
Confidence
Q ss_pred --------------ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCC
Q psy12482 243 --------------CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKG 307 (419)
Q Consensus 243 --------------~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~ 307 (419)
..+|+|.++..|.|........+......+.|.++|.|..|.+|.....+ .+|||++|.+ +
T Consensus 666 i~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~----n 741 (1227)
T COG5038 666 IDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLV----N 741 (1227)
T ss_pred hhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEe----c
Confidence 01122222222222222222222222345689999999999999977777 9999999998 6
Q ss_pred CcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCc
Q psy12482 308 RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKH 372 (419)
Q Consensus 308 ~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~ 372 (419)
+..+.+|-....++||.|||.++-+ |. ... ..+.+.+||....+.|..||++.+.+.++..
T Consensus 742 ~~~k~rti~~~~~~npiw~~i~Yv~-v~--sk~-~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~ 802 (1227)
T COG5038 742 NLVKYRTIYGSSTLNPIWNEILYVP-VT--SKN-QRLTLECMDYEESGDDRNLGEVNINVSNVSK 802 (1227)
T ss_pred ceeEEEEecccCccccceeeeEEEE-ec--CCc-cEEeeeeecchhccccceeceeeeeeeeeee
Confidence 7888999999999999999998876 32 222 3399999999999999999999999999765
No 84
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.83 E-value=1.8e-19 Score=145.37 Aligned_cols=113 Identities=33% Similarity=0.551 Sum_probs=98.4
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
+|+|.+++.|.+. .+.|+|+|++|++|++.+.. .+||||++.+.+......+++|++++++.||
T Consensus 1 ~G~~~~~l~y~~~---------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P 65 (123)
T cd04035 1 LGTLEFTLLYDPA---------------NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNP 65 (123)
T ss_pred CcEEEEEEEEeCC---------------CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCC
Confidence 4999999999998 79999999999999988876 8999999999765555667999999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcC
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHY 373 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~ 373 (419)
+|||.|.|..++..++....|.|+|||++.. ++++||.+.++++++...
T Consensus 66 ~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 66 EFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred CccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence 9999999953555566667799999999988 799999999999986544
No 85
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=1.3e-19 Score=145.37 Aligned_cols=116 Identities=22% Similarity=0.418 Sum_probs=99.5
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|+|+|++|++|+..+.. +.+||||++++.+.+ ..+++|++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~-~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLL-STPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV 76 (119)
T ss_pred eEEEEEEeeCCCccCCC-CCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC
Confidence 78999999999998876 889999999996443 2368999999999999999999998664 244799999999988
Q ss_pred CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
++++||++.+++.++..+.....|++|.+.. .|+|.+.+.+
T Consensus 77 -~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~---------~g~l~~~~~~ 117 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQG---------KEELEVEFLL 117 (119)
T ss_pred -CCcccEEEEEEHHHCCCCCcEEEEEECCCCC---------CceEEEEEEe
Confidence 8999999999999988888889999997642 3898888765
No 86
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.82 E-value=1.1e-19 Score=148.61 Aligned_cols=111 Identities=32% Similarity=0.392 Sum_probs=96.3
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCC--CcceeecccccCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKG--RASKHKTGIIKRST 321 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~--~~~~~~T~~~~~t~ 321 (419)
+|+|.+++.|.+. .+.|.|+|++|++|+.++.. .+||||+|.+.+... ...+++|+++++++
T Consensus 2 ~G~l~~~l~y~~~---------------~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~ 66 (133)
T cd04009 2 YGVLTVKAYYRAS---------------EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTL 66 (133)
T ss_pred ceEEEEEEEEcCC---------------CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCC
Confidence 5999999999987 78999999999999998877 899999999975432 35678999999999
Q ss_pred CCccccEEEEcccCccc--cccCeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482 322 SPQWNHTVVYRDVSLEE--LSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 322 nP~wne~f~f~~v~~~~--~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~ 371 (419)
||+|||.|.|+ +.... +....|.|+|||++.++++++||++.|+|+++.
T Consensus 67 nP~wnE~f~f~-i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 67 FPLFDESFEFN-VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred CCccCCEEEEE-echhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 99999999996 65432 345679999999999999999999999998853
No 87
>KOG1328|consensus
Probab=99.82 E-value=5.8e-21 Score=183.26 Aligned_cols=98 Identities=34% Similarity=0.469 Sum_probs=85.7
Q ss_pred cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCC--CcceeecccccCCCCCccccEEEEcccCccccc--cCeEEEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKG--RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS--ERCLELT 347 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~--~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~--~~~l~i~ 347 (419)
...|.|-|+.|+++.+.|.| .+||||.|++.+... -...++|.++++|+||+|+|.|+|. ||++... ..+|.|+
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs-Vp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS-VPPEPCSTETAMLHFT 1024 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-cCccccccccceEEEE
Confidence 45677888999999999999 999999999987643 2446899999999999999999997 8876654 5779999
Q ss_pred EEECCCCCCCceeEEEEEeCCCCC
Q psy12482 348 VWDHDRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 348 V~d~~~~~~~~~lG~~~i~l~~~~ 371 (419)
|||||-++.++|-|++.+.|++|+
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred eeccceecccccchHHHHhhCCCC
Confidence 999999999999999999999863
No 88
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.82 E-value=1.6e-19 Score=146.19 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=102.5
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|.|+|++|+||+. .. |.+||||++++... ..+++|++++++.||+|||.|.|.+... ...|.|+|||++..
T Consensus 1 l~v~v~~A~~L~~--~~-g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE--AA-GSSNPYCVLEMDEP---PQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC--CC-CCcCCEEEEEECCC---CcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCC
Confidence 5799999999998 44 89999999999521 2358999999999999999999998542 45899999999999
Q ss_pred CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
+++++||++.+++.++........|++|.+.... .....|+|.+.+.|.+.
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYE---GDSVSGSITVEFLFMEP 122 (126)
T ss_pred CCCceEEEEEEeHHHhccCCceeEEEEecCCCCC---CCCcceEEEEEEEEecc
Confidence 8999999999999998877777899999866331 13456999999999876
No 89
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.82 E-value=1.8e-19 Score=146.73 Aligned_cols=123 Identities=30% Similarity=0.451 Sum_probs=101.7
Q ss_pred CEEEEEEEeecCCCCCCC--CCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEe
Q psy12482 122 GALEIHVKQCKDLAPVDT--KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWH 199 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d 199 (419)
|.|+|.|++|++|+..+. . +.+||||++++. ..+++|++++++.||.|||+|.|.+.. .....|.|+|||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~-~~~dPyv~v~~~-----~~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d 72 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGK-GKSDPYAILSVG-----AQRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWD 72 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCC-CCcCCeEEEEEC-----CEEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEE
Confidence 579999999999999887 6 789999999984 336899999999999999999998865 335699999999
Q ss_pred cCCCCCCceeEEEEEeCccccc---CCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 200 SDMFGRNDFLGEVMMSLENKVF---DDPSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 200 ~~~~~~~~~iG~~~~~l~~~~~---~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
++..+++++||++.+++.++.. ......|++|.+.... ......|+|+|.+.|
T Consensus 73 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~--~~~~~~G~i~l~~~~ 128 (128)
T cd04024 73 KDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG--KTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccC--ccccccceEEEEEEC
Confidence 9998899999999999998762 3345789999876332 124567999998865
No 90
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.3e-19 Score=144.82 Aligned_cols=115 Identities=20% Similarity=0.265 Sum_probs=94.7
Q ss_pred EEEEEEeecC---CCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482 124 LEIHVKQCKD---LAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 124 L~v~v~~a~~---L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
|.|+|++|++ |+.++.. |.+||||+|.+. .++.+|++++++.||+|||+|.|.+... ...|.|+|||+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~-g~sDPYv~i~~g-----~~~~rTk~~~~~~nP~WnE~f~f~v~~~---~~~l~v~V~d~ 72 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGR-GSTDAYCVAKYG-----PKWVRTRTVEDSSNPRWNEQYTWPVYDP---CTVLTVGVFDN 72 (126)
T ss_pred eEEEEEEeECCccccccccC-CCCCeeEEEEEC-----CEEeEcCcccCCCCCcceeEEEEEecCC---CCEEEEEEEEC
Confidence 8999999999 8888887 899999999995 3367999999999999999999998542 33899999999
Q ss_pred CCCC------CCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEE
Q psy12482 201 DMFG------RNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELII 250 (419)
Q Consensus 201 ~~~~------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l 250 (419)
+..+ ++++||++.+++.++........|++|...... .....|+|.+
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---~~~~~g~l~~ 125 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPS---GVKKMGELEC 125 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCC---CccCCcEEEe
Confidence 8873 899999999999998877777899999754321 1223476653
No 91
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=2.3e-19 Score=146.57 Aligned_cols=119 Identities=29% Similarity=0.524 Sum_probs=97.5
Q ss_pred ccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEE
Q psy12482 119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVW 198 (419)
Q Consensus 119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~ 198 (419)
...|.|+|+|++|++|+..+.. |.+||||++++. ..+++|++++++.||.|||+|.|.+.. +....|.|+||
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~-g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V~ 83 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSN-GKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITVF 83 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCC-CCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEEEecC--ccCCEEEEEEE
Confidence 3468899999999999999877 899999999995 336899999999999999999999854 33458999999
Q ss_pred ecCCCCCCceeEEEEEeCccccc-----CCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 199 HSDMFGRNDFLGEVMMSLENKVF-----DDPSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 199 d~~~~~~~~~iG~~~~~l~~~~~-----~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
|++.++++++||++.+++.++.. ..+...|..+.. ...|+|++++.+
T Consensus 84 D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~---------~~~g~i~l~~~~ 135 (136)
T cd08375 84 DRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHE---------VPTGEVVVKLDL 135 (136)
T ss_pred ECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecccc---------ccceeEEEEEEe
Confidence 99999899999999999998765 222334555532 234999999876
No 92
>KOG0696|consensus
Probab=99.81 E-value=2.5e-20 Score=170.03 Aligned_cols=111 Identities=33% Similarity=0.602 Sum_probs=99.7
Q ss_pred hccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482 242 ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRS 320 (419)
Q Consensus 242 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t 320 (419)
+..+|.|++.+... ...|.|+|.+|+||.+||.+ .|||||++.+.++.....+++|++++.+
T Consensus 165 tE~RGrl~l~~~~~-----------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~ 227 (683)
T KOG0696|consen 165 TERRGRLYLEAHIK-----------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKAT 227 (683)
T ss_pred hhhcceEEEEEEec-----------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhh
Confidence 45679999988774 58999999999999999999 9999999999998888899999999999
Q ss_pred CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482 321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~ 371 (419)
+||+|||+|.|. +.+++.. ..|.|+|||||+.+++++||...++++++.
T Consensus 228 LNP~wNEtftf~-Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl~ 276 (683)
T KOG0696|consen 228 LNPVWNETFTFK-LKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISELQ 276 (683)
T ss_pred cCccccceeEEe-ccccccc-ceeEEEEecccccccccccceecccHHHHh
Confidence 999999999996 6665554 459999999999999999999999998753
No 93
>KOG0696|consensus
Probab=99.81 E-value=3.5e-20 Score=169.09 Aligned_cols=123 Identities=34% Similarity=0.585 Sum_probs=110.2
Q ss_pred eeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc
Q psy12482 106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL 185 (419)
Q Consensus 106 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~ 185 (419)
+.+|+|.+.+.. ....|+|.|.+|+||.++|.+ |.+||||++.+.|+.+...++||++++.++||+|||+|.|.+.+
T Consensus 166 E~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpN-GlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp 242 (683)
T KOG0696|consen 166 ERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPN-GLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKP 242 (683)
T ss_pred hhcceEEEEEEe--cCceEEEEehhhccccccCCC-CCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccc
Confidence 347999887775 578999999999999999998 99999999999998888889999999999999999999999887
Q ss_pred CcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 186 EDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 186 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
++- +..|.|+|||+|..++++|+|..+++++++ ...+...||.|..
T Consensus 243 ~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl-~K~p~~GWyKlLs 288 (683)
T KOG0696|consen 243 SDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISEL-QKAPVDGWYKLLS 288 (683)
T ss_pred ccc-cceeEEEEecccccccccccceecccHHHH-hhcchhhHHHHhh
Confidence 764 459999999999999999999999999995 4567888998743
No 94
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=1.8e-19 Score=145.94 Aligned_cols=88 Identities=25% Similarity=0.376 Sum_probs=76.5
Q ss_pred EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCc---cccccCeEEEEEEEC
Q psy12482 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSL---EELSERCLELTVWDH 351 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~---~~~~~~~l~i~V~d~ 351 (419)
++|+|++|+||+.++.+ .+||||+|.+. ..+++|++++++.||+|||.|.|. ++. .++....|.|+|||+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-----~~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~ 74 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-----KEKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHR 74 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-----CeeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEc
Confidence 57999999999998877 89999999983 245799999999999999999996 654 234567799999999
Q ss_pred CCCCCCceeEEEEEeCCC
Q psy12482 352 DRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 352 ~~~~~~~~lG~~~i~l~~ 369 (419)
+.++++++||++.|+|++
T Consensus 75 ~~~~~d~~iG~~~i~l~~ 92 (126)
T cd08682 75 NLLGLDKFLGQVSIPLND 92 (126)
T ss_pred cccCCCceeEEEEEEHHH
Confidence 999999999999999965
No 95
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=3.7e-19 Score=142.56 Aligned_cols=113 Identities=30% Similarity=0.452 Sum_probs=94.6
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|.|+|++|++|+.+ .+||||++++.. .+.+|++++++.||+|||+|.|.+.. +....|.|+|||++..
T Consensus 2 L~V~Vi~a~~L~~~-----~~Dpyv~v~l~~-----~~~kT~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~ 69 (121)
T cd08378 2 LYVRVVKARGLPAN-----SNDPVVEVKLGN-----YKGSTKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA 69 (121)
T ss_pred EEEEEEEecCCCcc-----cCCCEEEEEECC-----ccccccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC
Confidence 78999999999877 479999999962 36899999999999999999998643 3456899999999977
Q ss_pred CCCceeEEEEEeCcccccCC-----CCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 204 GRNDFLGEVMMSLENKVFDD-----PSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~~~~-----~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
++++||++.++++++.... ....||+|.+... ...+|+|+|++.|
T Consensus 70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-----~~~~G~i~l~~~~ 119 (121)
T cd08378 70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-----GRVGGELMLAVWF 119 (121)
T ss_pred -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-----CccceEEEEEEEe
Confidence 7899999999999976533 2468999987654 2356999999987
No 96
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.81 E-value=1.9e-19 Score=141.98 Aligned_cols=105 Identities=27% Similarity=0.467 Sum_probs=91.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCcee-ccEEEEEcccCcccccEEEEEEEecCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVF-DEVLKFQLTLEDLECRTLWLSVWHSDM 202 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~l~~~~l~i~v~d~~~ 202 (419)
|.|+|++|++|+.++...+.+||||++++.+ .++||++++++.||.| ||+|.|.++..++.+..|.|+|||++.
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-----TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-----eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 6899999999999884337899999999963 4789999999999999 999999998877767799999999999
Q ss_pred CCCCceeEEEEEeCccccc---CCCCCceecCcc
Q psy12482 203 FGRNDFLGEVMMSLENKVF---DDPSPKCYPLQE 233 (419)
Q Consensus 203 ~~~~~~iG~~~~~l~~~~~---~~~~~~w~~L~~ 233 (419)
++++++||++.+++.++.. ......||+|..
T Consensus 76 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999999999999876 335788999864
No 97
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.80 E-value=2.6e-19 Score=147.56 Aligned_cols=95 Identities=22% Similarity=0.400 Sum_probs=80.8
Q ss_pred eEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEccc-------------Ccccccc
Q psy12482 275 SLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDV-------------SLEELSE 341 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v-------------~~~~~~~ 341 (419)
+|.|+|++|+||+. ..+.+||||+|.+.+...+..+++|++++++.||+|||+|.|. + +..+++.
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEE-EecccccccccccCCcccccE
Confidence 48999999999988 3338999999999875445567899999999999999999997 5 3345566
Q ss_pred CeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482 342 RCLELTVWDHDRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 342 ~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~ 371 (419)
..|.|.|||++.++++++||++.|++..+.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~ 108 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLD 108 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEeccccc
Confidence 779999999999889999999999998853
No 98
>KOG2059|consensus
Probab=99.80 E-value=8.8e-20 Score=175.36 Aligned_cols=223 Identities=22% Similarity=0.261 Sum_probs=169.3
Q ss_pred cceeeecccCCCCcccceeeeceeeceeeccccccccCCCCcCcccccccCccCCcccccccccccccCCcccccccccC
Q psy12482 9 KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNKSLLGARSD 88 (419)
Q Consensus 9 k~kT~v~~~t~nP~wnE~f~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (419)
..||.++.+||.|.|.|.|.|++++.|.- ++|.++|-| +.+++.+|.|.+.-.++.... ....|..+..
T Consensus 39 v~RT~tv~ksL~PF~gEe~~~~iP~~F~~-----l~fYv~D~d-~~~D~~IGKvai~re~l~~~~--~~d~W~~L~~--- 107 (800)
T KOG2059|consen 39 VCRTATVEKSLCPFFGEEFYFEIPRTFRY-----LSFYVWDRD-LKRDDIIGKVAIKREDLHMYP--GKDTWFSLQP--- 107 (800)
T ss_pred hhhhhhhhhhcCCccccceEEecCcceee-----EEEEEeccc-cccccccceeeeeHHHHhhCC--CCccceeccc---
Confidence 56899999999999999999987777654 457788999 999999999887544443222 2334443321
Q ss_pred CccccccCCCCCCCCceeeeeEEEEEEEEEc--cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccc
Q psy12482 89 SMASVYSGAGEGRYGSVIVKGEVEFGLQYNY--KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166 (419)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~G~i~~~l~y~~--~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~ 166 (419)
-..+.++.|+|++.+.... +...+...+++++++.+... +.+|||+++....... ....+|++
T Consensus 108 ------------VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~--~~~dp~~~v~~~g~~~-~~~~~T~~ 172 (800)
T KOG2059|consen 108 ------------VDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIIN--GQCDPFARVTLCGPSK-LKEKKTKV 172 (800)
T ss_pred ------------cCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeC--CCCCcceEEeecccch-hhccccce
Confidence 0112345899999999875 45678888889998888775 5699999999864332 23479999
Q ss_pred ccCCCCceeccEEEEEcccCcc-------------cccEEEEEEEe-cCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482 167 KKHTLSPVFDEVLKFQLTLEDL-------------ECRTLWLSVWH-SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ 232 (419)
Q Consensus 167 ~~~t~nP~wne~f~f~v~~~~l-------------~~~~l~i~v~d-~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~ 232 (419)
++.|.+|.|||.|.|.+..+.- ....|++.+|+ .+....+.|+|++.+++..+........||-|+
T Consensus 173 ~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lq 252 (800)
T KOG2059|consen 173 KKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQ 252 (800)
T ss_pred eeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEe
Confidence 9999999999999999876510 12368899998 455556999999999999887777889999998
Q ss_pred cccchhhh-hhccccceEEEEEEeCC
Q psy12482 233 ERSEILDE-LICSKGELIIGLKFVPP 257 (419)
Q Consensus 233 ~~~~~~~~-~~~~~G~l~l~l~~~~~ 257 (419)
+....... ..+..|.+++.++|...
T Consensus 253 p~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 253 PRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred cCCCcccCCCCCCccceeeeEEeeec
Confidence 87655443 36778999999999744
No 99
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.80 E-value=1.6e-18 Score=142.89 Aligned_cols=127 Identities=21% Similarity=0.312 Sum_probs=101.3
Q ss_pred EEEEEEeecC--CCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC------cccccEEEE
Q psy12482 124 LEIHVKQCKD--LAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE------DLECRTLWL 195 (419)
Q Consensus 124 L~v~v~~a~~--L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~------~l~~~~l~i 195 (419)
..++|..|++ |+..+.. +.+||||++++...+....+.||+++++|+||+|||+|.|.|... .+....|.|
T Consensus 4 ~el~i~~~~~~~l~~~~~~-~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNP-KDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCC-CCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 3455556666 6777765 789999999985334445689999999999999999999999765 355678999
Q ss_pred EEEecCCC-CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 196 SVWHSDMF-GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 196 ~v~d~~~~-~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
+|||++.+ ++|++||++.++|+.+........|++|...... .-|+|.+.++...+
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~------~Gg~l~v~ir~r~p 139 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKA------TGGKLEVKVRLREP 139 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCC------cCCEEEEEEEecCC
Confidence 99999876 5799999999999998877778889998754332 23999999988654
No 100
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.79 E-value=3e-19 Score=141.85 Aligned_cols=87 Identities=16% Similarity=0.321 Sum_probs=74.3
Q ss_pred ceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccC-CCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 274 GSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKR-STSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~-t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
|.|+|+|++|++|+..+.+++||||++.+. . .+++|+++.+ +.||+|||+|.|+ +... ...|.|+|||+|
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg----~-~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~d 72 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVG----H-AVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDER 72 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEEC----C-EEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeCC
Confidence 789999999999988774499999999993 2 3578999876 7999999999997 5432 245999999999
Q ss_pred CCCCCceeEEEEEeCCC
Q psy12482 353 RLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 353 ~~~~~~~lG~~~i~l~~ 369 (419)
.+++|++||.+.|++..
T Consensus 73 ~~~~dd~iG~~~i~l~~ 89 (121)
T cd04016 73 AFTMDERIAWTHITIPE 89 (121)
T ss_pred CCcCCceEEEEEEECch
Confidence 99999999999999964
No 101
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.79 E-value=5.5e-19 Score=139.63 Aligned_cols=107 Identities=26% Similarity=0.406 Sum_probs=90.4
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEec
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWHS 200 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d~ 200 (419)
|.|+|+|++|++|+..+...+.+||||+|++.+.+ ...++|++++++.||+|||+|.|.+...++ ....|.|+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~ 78 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDS 78 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeC
Confidence 57999999999999988642679999999997654 236899999999999999999998766544 346899999999
Q ss_pred CCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 201 DMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 201 ~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
+.++++++||++.+++.++. ....|+++..
T Consensus 79 d~~~~dd~lG~~~i~l~~l~---~~~~~~~~~~ 108 (111)
T cd04041 79 DRFTADDRLGRVEIDLKELI---EDRNWMGRRE 108 (111)
T ss_pred CCCCCCCcceEEEEEHHHHh---cCCCCCcccc
Confidence 99999999999999999976 4457888764
No 102
>KOG1013|consensus
Probab=99.79 E-value=1.2e-19 Score=160.50 Aligned_cols=206 Identities=25% Similarity=0.292 Sum_probs=157.2
Q ss_pred CccccccCcceeeecccCCCCcccceeeeceeeceeeccccccccCCCCcCcccccccCccCCcccccccccccccCCcc
Q psy12482 1 LLARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNK 80 (419)
Q Consensus 1 ~~~~~k~~k~kT~v~~~t~nP~wnE~f~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~ 80 (419)
||+..|..+.+|++..+++||.|||+-.+..+.+..+-..... ..+.|-+.+.+....|+.-+.+..+.....-....+
T Consensus 123 lpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~R-k~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~c 201 (362)
T KOG1013|consen 123 LPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLR-KVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNIC 201 (362)
T ss_pred ccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhh-eeeccCcccccccCcccchhhhhccChhhcchhhhh
Confidence 6888999999999999999999999988876666555433333 446677777777777774433333221111000000
Q ss_pred cccccccCCccccccCCCCCCCCceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC
Q psy12482 81 SLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG 160 (419)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~ 160 (419)
+. ..++ .........+.+|+|.+++.|......|.|.+++|..|..+|.+ +.+||||+.++.++....-
T Consensus 202 --l~---~~lp-----~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsn-g~sDpyvS~~l~pdv~~~f 270 (362)
T KOG1013|consen 202 --LE---KSLP-----SERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSN-GYSDPYVSQRLSPDVGKKF 270 (362)
T ss_pred --hh---ccCC-----cccccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccC-CCCCccceeecCCCcchhh
Confidence 00 0000 01111222355899999999999999999999999999999998 9999999999998887777
Q ss_pred eeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcc
Q psy12482 161 KRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218 (419)
Q Consensus 161 ~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~ 218 (419)
++||.+.+++.+|+||+.|.|.+...+|....+.|.|||++..+..+++|.+..++-.
T Consensus 271 kkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 271 KKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred cccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 8999999999999999999999999999999999999999987789999998877643
No 103
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.3e-18 Score=140.11 Aligned_cols=116 Identities=28% Similarity=0.434 Sum_probs=97.7
Q ss_pred CEEEEEEEeecCCCCCCCC-----CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEE
Q psy12482 122 GALEIHVKQCKDLAPVDTK-----RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLS 196 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~-----~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~ 196 (419)
|.|+|+|++|++|+..+.. .+.+||||++++.. ..++|++++++.||.|||+|.|.+... ....|.|+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~ 73 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-----QTFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIE 73 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-----EeEEccccCCCCCCcccceEEEEeCCC--CCCEEEEE
Confidence 5799999999999988742 26799999999962 468999999999999999999987543 34589999
Q ss_pred EEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 197 VWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 197 v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
|||++.. ++++||++.+++.++........|++|.+. ..|+|++.+.|
T Consensus 74 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~---------~~G~~~~~~~~ 121 (121)
T cd08391 74 LFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV---------KSGRLHLKLEW 121 (121)
T ss_pred EEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC---------CCceEEEEEeC
Confidence 9999987 899999999999998776677899999764 23999988764
No 104
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.79 E-value=2e-18 Score=140.93 Aligned_cols=107 Identities=32% Similarity=0.632 Sum_probs=92.5
Q ss_pred ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323 (419)
Q Consensus 245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP 323 (419)
+|+|.|++.|.+ +.|+|+|++|+||+..+.. .+||||+|.+.+......+++|++++++.||
T Consensus 1 ~g~~~~~~~~~~-----------------~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P 63 (131)
T cd04026 1 RGRIYLKISVKD-----------------NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNP 63 (131)
T ss_pred CcEEEEEEEECC-----------------CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCC
Confidence 499999999974 7899999999999988877 8999999999765545677999999999999
Q ss_pred ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
.|||+|.|+ +...+ ....|.|+|||++..+++++||++.++++++
T Consensus 64 ~wne~f~~~-~~~~~-~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l 108 (131)
T cd04026 64 VWNETFTFD-LKPAD-KDRRLSIEVWDWDRTTRNDFMGSLSFGVSEL 108 (131)
T ss_pred CccceEEEe-CCchh-cCCEEEEEEEECCCCCCcceeEEEEEeHHHh
Confidence 999999996 65433 2456999999999988999999999999763
No 105
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.79 E-value=2e-18 Score=141.47 Aligned_cols=122 Identities=27% Similarity=0.464 Sum_probs=97.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc-----Ccc--cccEEEE
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL-----EDL--ECRTLWL 195 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~l--~~~~l~i 195 (419)
+|+|+|++|++|+..+.. |.+||||+|++. ..+++|++++++.||.|||+|.|.+.. +++ ....|.|
T Consensus 2 ~l~v~V~~a~~L~~~d~~-g~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v 75 (135)
T cd04017 2 QLRAYIYQARDLLAADKS-GLSDPFARVSFL-----NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVV 75 (135)
T ss_pred EEEEEEEEeecCcCCCCC-CCCCCEEEEEEC-----CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEE
Confidence 689999999999999987 899999999996 336899999999999999999997421 112 1247999
Q ss_pred EEEecCCCCCCceeEEEEEe-Ccccc---cCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 196 SVWHSDMFGRNDFLGEVMMS-LENKV---FDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 196 ~v~d~~~~~~~~~iG~~~~~-l~~~~---~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
+|||++..+++++||++.+. +..+. ...+..+|++|..... ..|+|++++.+.+.
T Consensus 76 ~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~-------~~Geil~~~~~~~~ 134 (135)
T cd04017 76 ELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQ-------SAGELLAAFELIEV 134 (135)
T ss_pred EEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCC-------chhheeEEeEEEEe
Confidence 99999999999999999873 33322 2456789999975432 45999999998764
No 106
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.78 E-value=2.1e-18 Score=139.99 Aligned_cols=119 Identities=25% Similarity=0.360 Sum_probs=100.0
Q ss_pred EEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCc
Q psy12482 128 VKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND 207 (419)
Q Consensus 128 v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~ 207 (419)
|++|++|+. .. +.+||||+|++. ..+++|++++++.||+|||+|.|.+.........|.|+|||++..++++
T Consensus 2 vi~a~~L~~--~~-g~~Dpyv~v~~~-----~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~ 73 (127)
T cd08373 2 VVSLKNLPG--LK-GKGDRIAKVTFR-----GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNR 73 (127)
T ss_pred eEEeeCCcc--cC-CCCCCEEEEEEC-----CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCc
Confidence 688999998 44 789999999995 2357999999999999999999998654345669999999999988999
Q ss_pred eeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCC
Q psy12482 208 FLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPED 259 (419)
Q Consensus 208 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~ 259 (419)
+||++.++++++........|++|.+.... ...|+|.++++|.|...
T Consensus 74 ~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~-----~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 74 LIGSATVSLQDLVSEGLLEVTEPLLDSNGR-----PTGATISLEVSYQPPDG 120 (127)
T ss_pred eEEEEEEEhhHcccCCceEEEEeCcCCCCC-----cccEEEEEEEEEeCCCC
Confidence 999999999998877777889999755432 23499999999999854
No 107
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.78 E-value=1.3e-18 Score=137.24 Aligned_cols=88 Identities=28% Similarity=0.483 Sum_probs=78.6
Q ss_pred EEEEEeccccccccCC-C-CCCcEEEEEEeCCCCCcceeecccccCCCCCcc-ccEEEEcccCccccccCeEEEEEEECC
Q psy12482 276 LHVLIKEAKSLCPVKS-N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW-NHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~-~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~w-ne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
|.|+|++|+||+.++. . .+||||+|.+.. .+++|+++++++||+| ||.|.|. ++..++.+..|.|+|||++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d 74 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-----TTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHD 74 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-----eeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCC
Confidence 5799999999999884 4 899999999842 6689999999999999 9999996 8776676778999999999
Q ss_pred CCCCCceeEEEEEeCCC
Q psy12482 353 RLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 353 ~~~~~~~lG~~~i~l~~ 369 (419)
.++++++||++.++++.
T Consensus 75 ~~~~~~~iG~~~~~l~~ 91 (110)
T cd08688 75 TYSANDAIGKVYIDLNP 91 (110)
T ss_pred CCCCCCceEEEEEeHHH
Confidence 99999999999999965
No 108
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.78 E-value=3.7e-18 Score=137.02 Aligned_cols=118 Identities=24% Similarity=0.427 Sum_probs=98.0
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
|.|.|+|++|++|+..+.. +.+||||++++.. ...+|++++++.||.|||+|.|.+.. + ...|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~ 71 (119)
T cd08377 1 GFLQVKVIRASGLAAADIG-GKSDPFCVLELVN-----ARLQTHTIYKTLNPEWNKIFTFPIKD--I-HDVLEVTVYDED 71 (119)
T ss_pred CEEEEEEEeeeCCCCCCCC-CCCCcEEEEEECC-----EeeecceecCCcCCccCcEEEEEecC--c-CCEEEEEEEECC
Confidence 5799999999999998877 7899999999952 24799999999999999999998753 2 358999999999
Q ss_pred CCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 202 MFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 202 ~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
..+++++||++.+++.++.. ....|+.|.+.... ....|+|.+++.+
T Consensus 72 ~~~~~~~iG~~~~~l~~~~~--~~~~~~~l~~~~~~----~~~~G~i~l~~~~ 118 (119)
T cd08377 72 KDKKPEFLGKVAIPLLSIKN--GERKWYALKDKKLR----TRAKGSILLEMDV 118 (119)
T ss_pred CCCCCceeeEEEEEHHHCCC--CCceEEECcccCCC----CceeeEEEEEEEe
Confidence 88899999999999988653 34689999765432 2346999998876
No 109
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=3e-18 Score=138.69 Aligned_cols=122 Identities=24% Similarity=0.336 Sum_probs=98.8
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
|.|+|+|++|++|+..+...+.+||||++++..+ ...++|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~~---~~~~l~~~v~d~~ 75 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVNS---LTEPLNLTVYDFN 75 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeCC---CCCEEEEEEEecC
Confidence 6799999999999976533367899999999743 246899999999999999999999862 3558999999999
Q ss_pred CCCCCceeEEEEEeCcccccCCCCCc-eecCccccchhhhhhccccceEEEEEEeC
Q psy12482 202 MFGRNDFLGEVMMSLENKVFDDPSPK-CYPLQERSEILDELICSKGELIIGLKFVP 256 (419)
Q Consensus 202 ~~~~~~~iG~~~~~l~~~~~~~~~~~-w~~L~~~~~~~~~~~~~~G~l~l~l~~~~ 256 (419)
..+++++||++.+++.++........ |+.+... .+..|+|+++++|.|
T Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~-------~k~~G~i~~~l~~~p 124 (124)
T cd04044 76 DKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRN-------GKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCceeEEEEEEHHHhccCccccCcchhhhcC-------CccceEEEEEEEeCC
Confidence 98899999999999999876655543 4445422 234599999999986
No 110
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=4.5e-18 Score=142.57 Aligned_cols=124 Identities=20% Similarity=0.385 Sum_probs=100.2
Q ss_pred CCEEEEEEEeecCCCCCCC-----------------------------CCCCCCcEEEEEEeCCCCCCCeeecccccCCC
Q psy12482 121 QGALEIHVKQCKDLAPVDT-----------------------------KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTL 171 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~-----------------------------~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~ 171 (419)
.|.|.|+|.+|++|+.+|. ..|.+||||+|.+... ...+|++++++.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~----~~~rT~v~~~~~ 81 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGA----RVARTRVIENSE 81 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCe----EeeEEEEeCCCC
Confidence 4789999999999999872 3367899999999521 246999999999
Q ss_pred CceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEE
Q psy12482 172 SPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIG 251 (419)
Q Consensus 172 nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~ 251 (419)
||+|||+|.|.+... ...|.|.|||.+..+ +++||++.++++++..+.....|++|...... .....|+|+++
T Consensus 82 nP~WnE~F~~~~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~---~~~~~~~l~v~ 154 (158)
T cd04015 82 NPVWNESFHIYCAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGK---PPKPGAKIRVS 154 (158)
T ss_pred CCccceEEEEEccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCC---CCCCCCEEEEE
Confidence 999999999987542 347999999999875 68999999999998877788899999765322 12334899999
Q ss_pred EEEe
Q psy12482 252 LKFV 255 (419)
Q Consensus 252 l~~~ 255 (419)
+.|.
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9883
No 111
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.78 E-value=7.1e-18 Score=136.77 Aligned_cols=119 Identities=24% Similarity=0.399 Sum_probs=98.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM 202 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~ 202 (419)
.|+|+|++|++|+..+.. +.+||||++++...+ ....+|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~-~~~Dpyv~v~~~~~~--~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~ 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSN-GLSDPYVTLVDTNGK--RRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSF 76 (126)
T ss_pred EEEEEEEEeECCCCCCCC-CCCCceEEEEECCCC--eeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCC
Confidence 589999999999999876 899999999875432 2357999999999999999999998664 34589999999998
Q ss_pred CCCCceeEEEEEeCcccccC---CCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 203 FGRNDFLGEVMMSLENKVFD---DPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 203 ~~~~~~iG~~~~~l~~~~~~---~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
.+++++||++.++|.++... .....|++|.+. |+|++.+.+.-.
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~-----------g~i~l~~~~~~~ 123 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQ-----------GRLLLRVSMEGE 123 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCCC-----------CeEEEEEEEeee
Confidence 88999999999999875433 245689999752 999999888643
No 112
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=4.4e-18 Score=136.59 Aligned_cols=118 Identities=25% Similarity=0.258 Sum_probs=96.6
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|.|.|++|++|+..+.. |.+||||++.+.. ....+|++++++.||+|||.|.|.+... ...|.|.|||++..
T Consensus 2 l~v~vi~a~~L~~~d~~-g~~DPYv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~ 73 (121)
T cd04054 2 LYIRIVEGKNLPAKDIT-GSSDPYCIVKVDN----EVIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTL 73 (121)
T ss_pred EEEEEEEeeCCcCCCCC-CCCCceEEEEECC----EeeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCC
Confidence 78999999999999987 8899999999842 1246999999999999999999987642 35899999999999
Q ss_pred CCCceeEEEEEeCcccccCC-CCCceecCccccchhhhhhccccceEEEEE
Q psy12482 204 GRNDFLGEVMMSLENKVFDD-PSPKCYPLQERSEILDELICSKGELIIGLK 253 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~ 253 (419)
+++++||++.++++++.... ....|++|.+.... ....|+|.+.+.
T Consensus 74 ~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~----~~~~G~i~l~~~ 120 (121)
T cd04054 74 SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD----EEVQGEIHLELS 120 (121)
T ss_pred CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC----CccccEEEEEEE
Confidence 99999999999998875432 36889999764322 234599988764
No 113
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.77 E-value=3.6e-18 Score=139.80 Aligned_cols=111 Identities=38% Similarity=0.612 Sum_probs=95.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC-------------cccc
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE-------------DLEC 190 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-------------~l~~ 190 (419)
|+|.|++|++|+.+ .. +.+||||+|++... ....+++|++++++.||.|||+|.|.+... ++..
T Consensus 1 L~V~Vi~A~~L~~~-~~-g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd08675 1 LSVRVLECRDLALK-SN-GTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEK 77 (137)
T ss_pred CEEEEEEccCCCcc-cC-CCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccc
Confidence 57999999999988 55 88999999999843 234578999999999999999999997653 4466
Q ss_pred cEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccch
Q psy12482 191 RTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEI 237 (419)
Q Consensus 191 ~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~ 237 (419)
..|.|+|||++..+++++||++.+++.++........|++|.+....
T Consensus 78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 124 (137)
T cd08675 78 SELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP 124 (137)
T ss_pred cEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence 79999999999888999999999999998777778999999887644
No 114
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.77 E-value=4.8e-18 Score=132.89 Aligned_cols=101 Identities=24% Similarity=0.423 Sum_probs=84.7
Q ss_pred EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL 354 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~ 354 (419)
|.|+|++|+||+..+.. .+||||+|.+.. .+++|++++++.||+|||.|.|. +.. .....|.|+|+|++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~Wne~f~f~-v~~--~~~~~l~v~v~d~~~- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK-----TTQKSKVKERTNNPVWEEGFTFL-VRN--PENQELEIEVKDDKT- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC-----EEEeCccccCCCCCcccceEEEE-eCC--CCCCEEEEEEEECCC-
Confidence 78999999999998877 999999999942 56899999999999999999997 543 233569999999886
Q ss_pred CCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCC
Q psy12482 355 TSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSS 410 (419)
Q Consensus 355 ~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~ 410 (419)
+++||++.|+|+ ++...|+..+.+|++|..+
T Consensus 73 --~~~iG~~~i~l~-----------------------~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 --GKSLGSLTLPLS-----------------------ELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred --CCccEEEEEEHH-----------------------HhhccccceeeeeEecCCC
Confidence 789999999995 4556666778888888765
No 115
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.77 E-value=6.9e-18 Score=137.84 Aligned_cols=117 Identities=28% Similarity=0.423 Sum_probs=98.3
Q ss_pred CCEEEEEEEeecCCCCCCCC---------CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCccccc
Q psy12482 121 QGALEIHVKQCKDLAPVDTK---------RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECR 191 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~---------~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~ 191 (419)
.|.|+|+|++|++|...+.. .+.+||||++++.. ....+|++++++.||.|||+|.|.+.. ..
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~----~~~~kT~~~~~t~~P~Wne~f~~~v~~----~~ 74 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD----THIGKTSTKPKTNSPVWNEEFTTEVHN----GR 74 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC----EEEeEEeEcCCCCCCCcceeEEEEcCC----CC
Confidence 46899999999999988752 15789999999952 124689999999999999999999863 45
Q ss_pred EEEEEEEecCCCCCCceeEEEEEeCccccc--CCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482 192 TLWLSVWHSDMFGRNDFLGEVMMSLENKVF--DDPSPKCYPLQERSEILDELICSKGELIIGLKFVP 256 (419)
Q Consensus 192 ~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~--~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~ 256 (419)
.|.|.|||.+..+++++||++.++|.++.. ......|++|.+. |+|++.+.|..
T Consensus 75 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~-----------G~l~l~~~~~~ 130 (132)
T cd04014 75 NLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQ-----------GKLHVKIELKG 130 (132)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCC-----------cEEEEEEEEec
Confidence 899999999988889999999999999776 4567899999742 99999999865
No 116
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.77 E-value=3.1e-18 Score=133.94 Aligned_cols=100 Identities=21% Similarity=0.367 Sum_probs=86.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|.|+|++|++|+..+.. +.+||||++++. ..+++|++++++.||+|||.|.|.+.... ...|.|+|||.+.
T Consensus 2 L~V~v~~A~~L~~~~~~-~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~v~~~~--~~~l~v~v~d~~~- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKST-KEPSPYVELTVG-----KTTQKSKVKERTNNPVWEEGFTFLVRNPE--NQELEIEVKDDKT- 72 (105)
T ss_pred EEEEEeeecCCCCcccC-CCCCcEEEEEEC-----CEEEeCccccCCCCCcccceEEEEeCCCC--CCEEEEEEEECCC-
Confidence 78999999999998876 899999999996 24789999999999999999999987643 3489999999875
Q ss_pred CCCceeEEEEEeCcccccCC--CCCceecCccc
Q psy12482 204 GRNDFLGEVMMSLENKVFDD--PSPKCYPLQER 234 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~~~~--~~~~w~~L~~~ 234 (419)
+++||++.++|.++.... ....||+|...
T Consensus 73 --~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 --GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred --CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 789999999999876543 46789999765
No 117
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=2.1e-18 Score=136.31 Aligned_cols=95 Identities=26% Similarity=0.404 Sum_probs=81.1
Q ss_pred ceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcccc-ccCeEEEEEEE
Q psy12482 274 GSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEEL-SERCLELTVWD 350 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~-~~~~l~i~V~d 350 (419)
|.|+|+|++|+||+..+.. .+||||+|.+...+ ...++|+++++++||+|||.|.|. +...++ ....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEe
Confidence 6899999999999998864 89999999986543 346899999999999999999996 554443 34679999999
Q ss_pred CCCCCCCceeEEEEEeCCCCC
Q psy12482 351 HDRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 351 ~~~~~~~~~lG~~~i~l~~~~ 371 (419)
++.++++++||++.++++++.
T Consensus 78 ~d~~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 78 SDRFTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCCCCCcceEEEEEHHHHh
Confidence 999999999999999998764
No 118
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.76 E-value=4.6e-18 Score=133.01 Aligned_cols=96 Identities=25% Similarity=0.400 Sum_probs=81.0
Q ss_pred CEEEEEEEeecCCCCCCCC---CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEE
Q psy12482 122 GALEIHVKQCKDLAPVDTK---RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVW 198 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~---~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~ 198 (419)
|.|.|+|++|++|+..+.. ++.+||||++++. ..++||++++++.||+|||.|.|.+...+. ...|.|.||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~ 74 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RRVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVL 74 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CEeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEE
Confidence 6799999999999987632 1358999999994 336799999999999999999999865443 458999999
Q ss_pred ecCCCCCCceeEEEEEeCcccccCC
Q psy12482 199 HSDMFGRNDFLGEVMMSLENKVFDD 223 (419)
Q Consensus 199 d~~~~~~~~~iG~~~~~l~~~~~~~ 223 (419)
|++..+++++||++.++|+++....
T Consensus 75 D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 75 DKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ECCCCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999999875443
No 119
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.76 E-value=8e-18 Score=135.52 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=95.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|+|+|++|++|+..+.. +.+||||++++.+ ...++|++++++.||.|||+|.|.+.. ...|.|+|||++.+
T Consensus 2 l~v~v~~A~~L~~~~~~-~~~dpyv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~ 72 (123)
T cd08382 2 VRLTVLCADGLAKRDLF-RLPDPFAVITVDG----GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKF 72 (123)
T ss_pred eEEEEEEecCCCccCCC-CCCCcEEEEEECC----ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCC
Confidence 78999999999999887 8999999999942 336899999999999999999999865 45999999999988
Q ss_pred CC--CceeEEEEEeCcccccCC-CCCceecCccccchhhhhhccccceEEEE
Q psy12482 204 GR--NDFLGEVMMSLENKVFDD-PSPKCYPLQERSEILDELICSKGELIIGL 252 (419)
Q Consensus 204 ~~--~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~~~~~~~~~~~G~l~l~l 252 (419)
++ +++||++.+++.++.... ....|++|.+..... .....|+|.+.+
T Consensus 73 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~--~~~~~G~v~~~~ 122 (123)
T cd08382 73 KKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSD--NLSVRGKIVVSL 122 (123)
T ss_pred CCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCC--CceEeeEEEEEe
Confidence 75 579999999999976444 347799996655431 233468887764
No 120
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=7.3e-19 Score=145.09 Aligned_cols=115 Identities=20% Similarity=0.371 Sum_probs=86.6
Q ss_pred eEEEEEeccccccccCCC---------------CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcccc
Q psy12482 275 SLHVLIKEAKSLCPVKSN---------------TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEEL 339 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~---------------~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~ 339 (419)
.|.|+|++|++|+.+|.+ .+||||+|.+.+ .+.+|++++++.||+|||.|.|+ +.....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-----~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~ 74 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-----QKVKTSVKKNSYNPEWNEQIVFP-EMFPPL 74 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-----EeeecceEcCCCCCCcceEEEEE-eeCCCc
Confidence 478999999999998733 489999999842 24689999999999999999996 433333
Q ss_pred ccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCce
Q psy12482 340 SERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFW 400 (419)
Q Consensus 340 ~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~ 400 (419)
. ..|.|+|||+|..++|++||.+.|++.++...+. ..|+...|+ +|..|...|...
T Consensus 75 ~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~-~~~lp~~~p---~W~~lyg~~~~~ 130 (151)
T cd04018 75 C-ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGD-EGFLPTFGP---SFVNLYGSPREY 130 (151)
T ss_pred C-CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCc-cccCCccCc---eEEEeecCcccc
Confidence 3 4599999999999999999999999998755442 233333332 455555555543
No 121
>KOG1030|consensus
Probab=99.76 E-value=3.1e-18 Score=138.61 Aligned_cols=94 Identities=35% Similarity=0.482 Sum_probs=84.5
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
-|.|+|.|.+|.||..+|.. +++||||.+.++ .++.||+++++++||+|||.|.|.+.. ....|.+.|||+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~-~sSDPyVVl~lg-----~q~lkT~~v~~n~NPeWNe~ltf~v~d---~~~~lkv~VyD~ 75 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFL-GSSDPYVVLELG-----NQKLKTRVVYKNLNPEWNEELTFTVKD---PNTPLKVTVYDK 75 (168)
T ss_pred ceEEEEEEEeecCeeeeccc-cCCCCeEEEEEC-----CeeeeeeeecCCCCCcccceEEEEecC---CCceEEEEEEeC
Confidence 47899999999999999986 899999999997 557899999999999999999999877 355899999999
Q ss_pred CCCCCCceeEEEEEeCcccccCC
Q psy12482 201 DMFGRNDFLGEVMMSLENKVFDD 223 (419)
Q Consensus 201 ~~~~~~~~iG~~~~~l~~~~~~~ 223 (419)
|.+++|++||.++|+|..+....
T Consensus 76 D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 76 DTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCCCcccccceeeeccHHHHHHh
Confidence 99999999999999998865433
No 122
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=3.7e-18 Score=136.53 Aligned_cols=98 Identities=21% Similarity=0.336 Sum_probs=78.9
Q ss_pred eEEEEEecccc---ccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEE
Q psy12482 275 SLHVLIKEAKS---LCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWD 350 (419)
Q Consensus 275 ~l~v~v~~a~~---L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d 350 (419)
.|.|+|++|+| |+.++.. .+||||+|.+. ..+.+|+++++++||+|||+|.|. +. +.. ..|.|+|||
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-----~~~~rTk~~~~~~nP~WnE~f~f~-v~--~~~-~~l~v~V~d 71 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-----PKWVRTRTVEDSSNPRWNEQYTWP-VY--DPC-TVLTVGVFD 71 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC-----CEEeEcCcccCCCCCcceeEEEEE-ec--CCC-CEEEEEEEE
Confidence 38899999999 8888877 99999999983 235799999999999999999996 42 222 369999999
Q ss_pred CCCCC------CCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 351 HDRLT------SNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 351 ~~~~~------~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
++..+ +|++||++.|+++.+..+.....||.
T Consensus 72 ~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~ 108 (126)
T cd08379 72 NSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYP 108 (126)
T ss_pred CCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEE
Confidence 98873 89999999999987554444444444
No 123
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.75 E-value=3.6e-18 Score=133.60 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=77.3
Q ss_pred ceEEEEEeccccccccCCC-----CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482 274 GSLHVLIKEAKSLCPVKSN-----TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTV 348 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~-----~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 348 (419)
|.|.|+|.+|++|++.+.. .+||||+|.+. ..+++|++++++.||+|||.|.|+ +...+ ....|.|+|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~~~kT~v~~~t~nPvWne~f~f~-v~~~~-~~~~L~~~V 73 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RRVFRTSWRRHTLNPVFNERLAFE-VYPHE-KNFDIQFKV 73 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CEeEeeeeecCCCCCcccceEEEE-EeCcc-CCCEEEEEE
Confidence 6899999999999987631 48999999983 245799999999999999999996 54333 235699999
Q ss_pred EECCCCCCCceeEEEEEeCCCCCc
Q psy12482 349 WDHDRLTSNEFLGGIRLNLGHGKH 372 (419)
Q Consensus 349 ~d~~~~~~~~~lG~~~i~l~~~~~ 372 (419)
||++.++++++||++.|+|+.+..
T Consensus 74 ~D~d~~~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 74 LDKDKFSFNDYVATGSLSVQELLN 97 (108)
T ss_pred EECCCCCCCcceEEEEEEHHHHHh
Confidence 999999999999999999987543
No 124
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.75 E-value=2.6e-17 Score=133.16 Aligned_cols=123 Identities=24% Similarity=0.397 Sum_probs=99.1
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
...|+|+|++|++|...+.. |.+||||++.+. ..+.+|++++++.||+|||.|.|.+.. ....|.|+|||+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~-g~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~ 72 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSG-GGADPYVIIKCE-----GESVRSPVQKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNS 72 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCC-CCcCccEEEEEC-----CEEEEeCccCCCCCCcccceEEEEecC---CCCEEEEEEEEC
Confidence 35799999999999998876 899999999985 236899999999999999999998654 256899999999
Q ss_pred CCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 201 DMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 201 ~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
+.. ++++||++.+++.++ ......|++|...... ......|+|.+++.+.+.
T Consensus 73 ~~~-~d~~lG~~~~~l~~~--~~~~~~~~~l~~~~~~--~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 73 NLL-CDEFLGQATLSADPN--DSQTLRTLPLRKRGRD--AAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCC-CCCceEEEEEecccC--CCcCceEEEcccCCCC--CCCCCCCEEEEEEEEccc
Confidence 877 489999999999874 3445578888643321 235677999998887654
No 125
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.75 E-value=1.3e-17 Score=135.06 Aligned_cols=115 Identities=24% Similarity=0.436 Sum_probs=93.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM 202 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~ 202 (419)
.|+|.|++|++|+..+.. +.+||||+|++. ..+++|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~ 72 (127)
T cd04027 2 KISITVVCAQGLIAKDKT-GTSDPYVTVQVG-----KTKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDD 72 (127)
T ss_pred eEEEEEEECcCCcCCCCC-CCcCcEEEEEEC-----CEeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCC
Confidence 689999999999999887 889999999985 2357999999999999999999987432 3489999999985
Q ss_pred C-----------CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEE
Q psy12482 203 F-----------GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGL 252 (419)
Q Consensus 203 ~-----------~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l 252 (419)
. +.+++||++.+++.++. .....|+.|.+.... ....|+|.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~----~~~~G~i~~~~ 127 (127)
T cd04027 73 DIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDK----SAVSGAIRLHI 127 (127)
T ss_pred CcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCC----CcEeEEEEEEC
Confidence 2 46899999999998763 445799999876532 34569998864
No 126
>KOG1030|consensus
Probab=99.75 E-value=2.4e-18 Score=139.27 Aligned_cols=90 Identities=27% Similarity=0.448 Sum_probs=79.4
Q ss_pred cceEEEEEeccccccccCC-CCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482 273 KGSLHVLIKEAKSLCPVKS-NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH 351 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~-~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 351 (419)
.|-|+|.|.+|.||...|. +++||||.+.++.+ +.+|+++++++||+|||.|.|. +. +.. ..|+++|||+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q-----~lkT~~v~~n~NPeWNe~ltf~-v~--d~~-~~lkv~VyD~ 75 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQ-----KLKTRVVYKNLNPEWNEELTFT-VK--DPN-TPLKVTVYDK 75 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCe-----eeeeeeecCCCCCcccceEEEE-ec--CCC-ceEEEEEEeC
Confidence 6899999999999999999 49999999999544 4889999999999999999997 43 333 4499999999
Q ss_pred CCCCCCceeEEEEEeCCCCC
Q psy12482 352 DRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 352 ~~~~~~~~lG~~~i~l~~~~ 371 (419)
|.+++|++||.|+|++..+.
T Consensus 76 D~fs~dD~mG~A~I~l~p~~ 95 (168)
T KOG1030|consen 76 DTFSSDDFMGEATIPLKPLL 95 (168)
T ss_pred CCCCcccccceeeeccHHHH
Confidence 99999999999999998754
No 127
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=5.1e-18 Score=137.64 Aligned_cols=91 Identities=26% Similarity=0.405 Sum_probs=78.1
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccC-ccccccCeEEEEEEECC
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVS-LEELSERCLELTVWDHD 352 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~-~~~~~~~~l~i~V~d~~ 352 (419)
+|+|+|++|++|++.+.. .+||||+|.+.. .+++|++++++.||+|||.|.|. +. ...+....|.|+|||++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~ 74 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-----QKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDR 74 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-----EEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCC
Confidence 489999999999998877 899999999843 35799999999999999999997 54 33444567999999999
Q ss_pred CCC-CCceeEEEEEeCCCCC
Q psy12482 353 RLT-SNEFLGGIRLNLGHGK 371 (419)
Q Consensus 353 ~~~-~~~~lG~~~i~l~~~~ 371 (419)
.++ ++++||++.|+++++.
T Consensus 75 ~~~~~d~~lG~v~i~l~~l~ 94 (127)
T cd04022 75 RSGRRRSFLGRVRISGTSFV 94 (127)
T ss_pred CCcCCCCeeeEEEEcHHHcC
Confidence 886 8999999999998853
No 128
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.75 E-value=7.9e-18 Score=135.37 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=82.7
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
+|+|+|++|+||+..+.. .+||||++.+ +....++|++++++.||+|||.|.|. +. .+. ..|.|+|||++.
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~----~~~~~~kT~~~~~t~nP~Wne~f~f~-v~--~~~-~~l~~~v~D~d~ 72 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKY----GGKTVYKSKTIYKNLNPVWDEKFTLP-IE--DVT-QPLYIKVFDYDR 72 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEE----CCEEEEEeeeccCCCCCccceeEEEE-ec--CCC-CeEEEEEEeCCC
Confidence 589999999999999887 9999999998 33456899999999999999999996 43 333 569999999999
Q ss_pred CCCCceeEEEEEeCCCCCcCCceeecccC
Q psy12482 354 LTSNEFLGGIRLNLGHGKHYSKLVDWMDS 382 (419)
Q Consensus 354 ~~~~~~lG~~~i~l~~~~~~~~~~~w~~~ 382 (419)
.+++++||.+.|+++++..++....|+.+
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~L 101 (121)
T cd04042 73 GLTDDFMGSAFVDLSTLELNKPTEVKLKL 101 (121)
T ss_pred CCCCcceEEEEEEHHHcCCCCCeEEEEEC
Confidence 99999999999999886544444444443
No 129
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=1.1e-17 Score=136.65 Aligned_cols=93 Identities=29% Similarity=0.601 Sum_probs=81.0
Q ss_pred CCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482 270 SAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTV 348 (419)
Q Consensus 270 ~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 348 (419)
....|.|+|+|++|++|+..+.. .+||||++.+. ..+++|++++++.||.|||.|.|. +. +.....|.|+|
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f~-v~--~~~~~~l~i~V 82 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQFF-VK--DLEQDVLCITV 82 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEEE-ec--CccCCEEEEEE
Confidence 34479999999999999999877 99999999983 235899999999999999999996 43 44456799999
Q ss_pred EECCCCCCCceeEEEEEeCCCC
Q psy12482 349 WDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 349 ~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
||++.++++++||++.|++.++
T Consensus 83 ~D~d~~~~d~~lG~~~i~l~~l 104 (136)
T cd08375 83 FDRDFFSPDDFLGRTEIRVADI 104 (136)
T ss_pred EECCCCCCCCeeEEEEEEHHHh
Confidence 9999999999999999999774
No 130
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.74 E-value=1.8e-17 Score=136.92 Aligned_cols=106 Identities=28% Similarity=0.462 Sum_probs=89.1
Q ss_pred EccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCC------------------------CCeeecccccCCCCc
Q psy12482 118 NYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK------------------------AGKRKTRVKKHTLSP 173 (419)
Q Consensus 118 ~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~------------------------~~~~kT~~~~~t~nP 173 (419)
.+..+.|.|+|++|++|..++.. |.+||||+|.+.+.... ...++|++++++.||
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVN-GFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCC-CCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 45678899999999999999987 89999999999754321 124789999999999
Q ss_pred eeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecC
Q psy12482 174 VFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL 231 (419)
Q Consensus 174 ~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L 231 (419)
.|||+|.|.+.. +....|.|+|||++ +++||++.++++++. ......||+|
T Consensus 103 ~WnE~F~f~v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred ccccEEEEEecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 999999999754 34568999999987 799999999999987 4567899986
No 131
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=2.6e-17 Score=129.70 Aligned_cols=102 Identities=18% Similarity=0.312 Sum_probs=83.6
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
+.|.|+|++|++|+..+ ..||||+|.++ ..+.+|++.++ .||.|||.|.|.+.. .. ..|.|+|||++
T Consensus 2 ~~L~V~Vv~Ar~L~~~~----~~dPYV~Ik~g-----~~k~kT~v~~~-~nP~WnE~F~F~~~~--~~-~~L~v~V~dkd 68 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD----KFNTYVTLKVQ-----NVKSTTIAVRG-SQPCWEQDFMFEINR--LD-LGLVIELWNKG 68 (127)
T ss_pred ceEEEEEEEeeCCCCCC----CCCCeEEEEEC-----CEEeEeeECCC-CCCceeeEEEEEEcC--CC-CEEEEEEEeCC
Confidence 57999999999997643 45899999995 34678888877 599999999999854 23 35999999998
Q ss_pred CCCCCceeEEEEEeCcccccCCCC--CceecCccccch
Q psy12482 202 MFGRNDFLGEVMMSLENKVFDDPS--PKCYPLQERSEI 237 (419)
Q Consensus 202 ~~~~~~~iG~~~~~l~~~~~~~~~--~~w~~L~~~~~~ 237 (419)
.+ +|++||++.|+|+++..+... .+||+|.+....
T Consensus 69 ~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~ 105 (127)
T cd08394 69 LI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNM 105 (127)
T ss_pred Cc-CCCceEEEEEEhHHcccCCCCCCCccEecChHHhc
Confidence 66 899999999999998766555 789999865443
No 132
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=1.1e-17 Score=132.23 Aligned_cols=103 Identities=22% Similarity=0.290 Sum_probs=86.1
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc--CcccccEEEEEEE
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL--EDLECRTLWLSVW 198 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~l~~~~l~i~v~ 198 (419)
.-.|+|+|++|++|+ . +.+||||++++. .++++|++++++.||.|||+|.|.+.. .++.+..|.|+||
T Consensus 3 ~~~l~V~v~~a~~L~----~-~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 3 DFQVRVRVIEARQLV----G-GNIDPVVKVEVG-----GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY 72 (111)
T ss_pred cEEEEEEEEEcccCC----C-CCCCCEEEEEEC-----CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence 457999999999998 3 789999999997 235789999999999999999998643 3455679999999
Q ss_pred ecCCCCCCceeEEEEEeCcccccCC---CCCceecCcc
Q psy12482 199 HSDMFGRNDFLGEVMMSLENKVFDD---PSPKCYPLQE 233 (419)
Q Consensus 199 d~~~~~~~~~iG~~~~~l~~~~~~~---~~~~w~~L~~ 233 (419)
|++.++++++||++.++|+++.... -...|++|..
T Consensus 73 d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 73 DSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9999889999999999999875443 2467998864
No 133
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=9.1e-18 Score=139.21 Aligned_cols=89 Identities=28% Similarity=0.338 Sum_probs=75.8
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccC-CCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKR-STSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~-t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
.|+|+|++|+||++++.+ .+||||+|.+.+ .+++|+++.+ +.||+|||.|.|. ++ +.....|.|+|+|++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-----~~~kTk~~~~~t~nP~WNE~F~f~-v~--~~~~~~l~v~V~d~~ 72 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-----QVLRTRPSQTRNGNPSWNEELMFV-AA--EPFEDHLILSVEDRV 72 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-----EEeeeEeccCCCCCCcccCcEEEE-ec--CccCCeEEEEEEEec
Confidence 389999999999999988 999999999943 4578888866 6999999999996 53 233356999999999
Q ss_pred CCCCCceeEEEEEeCCCCC
Q psy12482 353 RLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 353 ~~~~~~~lG~~~i~l~~~~ 371 (419)
..+++++||++.|+|+++.
T Consensus 73 ~~~~dd~lG~v~i~L~~l~ 91 (150)
T cd04019 73 GPNKDEPLGRAVIPLNDIE 91 (150)
T ss_pred CCCCCCeEEEEEEEHHHCc
Confidence 9888999999999998853
No 134
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=1.5e-17 Score=131.52 Aligned_cols=91 Identities=23% Similarity=0.388 Sum_probs=77.0
Q ss_pred CcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcc-cCccccccCeEEEEEEE
Q psy12482 272 AKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRD-VSLEELSERCLELTVWD 350 (419)
Q Consensus 272 ~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~-v~~~~~~~~~l~i~V~d 350 (419)
+...|+|+|++|+||+ .+.+||||+|++.+ .+++|++++++.||+|||.|.|.. .+..++....|.|+|||
T Consensus 2 ~~~~l~V~v~~a~~L~---~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d 73 (111)
T cd04011 2 QDFQVRVRVIEARQLV---GGNIDPVVKVEVGG-----QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYD 73 (111)
T ss_pred CcEEEEEEEEEcccCC---CCCCCCEEEEEECC-----EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence 3678999999999998 33799999999952 357899999999999999999961 23344556789999999
Q ss_pred CCCCCCCceeEEEEEeCCCC
Q psy12482 351 HDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 351 ~~~~~~~~~lG~~~i~l~~~ 370 (419)
++.++++++||++.|+|+.+
T Consensus 74 ~~~~~~~~~iG~~~i~l~~v 93 (111)
T cd04011 74 SRSLRSDTLIGSFKLDVGTV 93 (111)
T ss_pred CcccccCCccEEEEECCccc
Confidence 99999999999999999875
No 135
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.73 E-value=6.2e-17 Score=131.60 Aligned_cols=120 Identities=22% Similarity=0.318 Sum_probs=95.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCC--------CCeeecccccCCCCcee-ccEEEEEcccCcccccEE
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK--------AGKRKTRVKKHTLSPVF-DEVLKFQLTLEDLECRTL 193 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~--------~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~l~~~~l 193 (419)
...|.+++|++|+ .+.. |.+||||++++.+++.. .++++|++++++.||+| ||+|.|.+.. ...|
T Consensus 2 ~~~~~~~~A~~L~-~~~f-g~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMF-FNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccC-CCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC----CCEE
Confidence 3678999999998 6666 89999999999866543 34789999999999999 9999999854 3389
Q ss_pred EEEEEecCCCCC---CceeEEEEEeCcccccCC---CCCceecCccccchhhhhhccccceEEEE
Q psy12482 194 WLSVWHSDMFGR---NDFLGEVMMSLENKVFDD---PSPKCYPLQERSEILDELICSKGELIIGL 252 (419)
Q Consensus 194 ~i~v~d~~~~~~---~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~~~~~~~~~~~~G~l~l~l 252 (419)
.|+|||++..++ +++||++.+++.++.... ....|++|..+.. .+..+|+|.+.+
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~----~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTP----TDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCC----CCcEEEEEEEEe
Confidence 999999865443 699999999999975442 3567999987653 255668888764
No 136
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.73 E-value=2e-17 Score=132.07 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=80.9
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
.++|.|++|+||+..+.. .+||||++.+. ..+++|++++++.||.|||.|.|. +.. .....|.|+|||++.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~-~~~--~~~~~l~v~v~d~~~ 72 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG-----NEKYKSKVCSKTLNPQWLEQFDLH-LFD--DQSQILEIEVWDKDT 72 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC-----CEeEecccccCCCCCceeEEEEEE-ecC--CCCCEEEEEEEECCC
Confidence 478999999999999877 89999999983 245899999999999999999996 542 235679999999999
Q ss_pred CCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 354 LTSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 354 ~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
.+++++||++.++++++..+.....|+.
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~ 100 (116)
T cd08376 73 GKKDEFIGRCEIDLSALPREQTHSLELE 100 (116)
T ss_pred CCCCCeEEEEEEeHHHCCCCCceEEEEE
Confidence 9999999999999987544333333433
No 137
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.73 E-value=2.2e-17 Score=132.23 Aligned_cols=87 Identities=23% Similarity=0.425 Sum_probs=74.8
Q ss_pred EEEEEeccccccccCC-C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 276 LHVLIKEAKSLCPVKS-N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~-~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
|.|.|++|+||++++. + .+||||+|.+ +.....+|+++++|+||+|||.|.|. ++.. ...|.|.|||++.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l----~~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~ 73 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNL----DQEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDV 73 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEE----CCccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCC
Confidence 6899999999998753 3 7899999998 33346899999999999999999996 6532 2579999999999
Q ss_pred CCCCceeEEEEEeCCCC
Q psy12482 354 LTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 354 ~~~~~~lG~~~i~l~~~ 370 (419)
++++++||.+.|+++++
T Consensus 74 ~~~~~~iG~~~i~l~~l 90 (121)
T cd08401 74 LRRDSVIGKVAIKKEDL 90 (121)
T ss_pred CCCCceEEEEEEEHHHc
Confidence 99999999999999774
No 138
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.72 E-value=2e-17 Score=132.43 Aligned_cols=89 Identities=19% Similarity=0.408 Sum_probs=75.1
Q ss_pred ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeeccccc-CCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIK-RSTSPQWNHTVVYRDVSLEELSERCLELTVWDH 351 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~-~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 351 (419)
|.|+|+|++|+||+..+.. .+||||+|.+.. .+++|+++. ++.||+|||.|.|. ++.. ....|.|+|||+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~ 72 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDD 72 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-----CccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeC
Confidence 6799999999999998877 999999999843 447788775 47899999999996 6543 335699999999
Q ss_pred CCCCCCceeEEEEEeCCCCC
Q psy12482 352 DRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 352 ~~~~~~~~lG~~~i~l~~~~ 371 (419)
+..+ +++||++.|+++++.
T Consensus 73 ~~~~-~~~iG~~~~~l~~~~ 91 (118)
T cd08681 73 DKRK-PDLIGDTEVDLSPAL 91 (118)
T ss_pred CCCC-CcceEEEEEecHHHh
Confidence 9876 999999999998853
No 139
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.72 E-value=2.7e-17 Score=131.86 Aligned_cols=100 Identities=27% Similarity=0.384 Sum_probs=80.5
Q ss_pred EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL 354 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~ 354 (419)
|.|+|++|++|+..+.. .+||||++.+.+.. ..+++|++++++.||+|||.|.|. +... ....|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC
Confidence 78999999999998876 89999999985432 356899999999999999999996 6543 335699999999998
Q ss_pred CCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 355 TSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 355 ~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
++++||++.++++.+..+.....|+.
T Consensus 77 -~~~~iG~~~~~l~~l~~g~~~~~~~~ 102 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGEKVRVTFS 102 (119)
T ss_pred -CCcccEEEEEEHHHCCCCCcEEEEEE
Confidence 89999999999987544333333433
No 140
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=2e-17 Score=133.49 Aligned_cols=88 Identities=27% Similarity=0.542 Sum_probs=76.3
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
+|+|+|++|++|+.++.+ .+||||+|.+. ..+.+|++++++.||+|||+|.|. +.. .....|.|+|||++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~-~~~--~~~~~l~~~v~d~~~ 72 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN-----GQTLETSVVKKSCYPRWNEVFEFE-LME--GADSPLSVEVWDWDL 72 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC-----CEEEeceeecCCCCCccCcEEEEE-cCC--CCCCEEEEEEEECCC
Confidence 589999999999998877 89999999983 234789999999999999999996 543 224669999999999
Q ss_pred CCCCceeEEEEEeCCCC
Q psy12482 354 LTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 354 ~~~~~~lG~~~i~l~~~ 370 (419)
.+++++||++.++++++
T Consensus 73 ~~~~~~iG~~~~~l~~l 89 (123)
T cd04025 73 VSKNDFLGKVVFSIQTL 89 (123)
T ss_pred CCCCcEeEEEEEEHHHc
Confidence 99999999999999774
No 141
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.72 E-value=1.8e-17 Score=132.70 Aligned_cols=113 Identities=24% Similarity=0.424 Sum_probs=84.4
Q ss_pred eEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482 275 SLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL 354 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~ 354 (419)
.|.|+|++|+||+.+ .+||||+|.+.. .+.+|++++++.||+|||+|.|. + ..+....|.|+|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~---~~Dpyv~v~l~~-----~~~kT~v~~~t~nP~Wne~F~f~-~--~~~~~~~L~~~v~d~d~~ 69 (121)
T cd08378 1 YLYVRVVKARGLPAN---SNDPVVEVKLGN-----YKGSTKAIERTSNPEWNQVFAFS-K--DRLQGSTLEVSVWDKDKA 69 (121)
T ss_pred CEEEEEEEecCCCcc---cCCCEEEEEECC-----ccccccccCCCCCCccceEEEEE-c--CCCcCCEEEEEEEeCCCC
Confidence 389999999999887 689999999842 45899999999999999999996 3 344557799999999987
Q ss_pred CCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeee
Q psy12482 355 TSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCI 405 (419)
Q Consensus 355 ~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~ 405 (419)
++++||++.|+++.+..++. ..+.....|+.+...++.++.|-.
T Consensus 70 -~~~~lG~~~i~l~~l~~~~~------~~~~~~~~W~~L~~~~~~~~~G~i 113 (121)
T cd08378 70 -KDDFLGGVCFDLSEVPTRVP------PDSPLAPQWYRLEDKKGGRVGGEL 113 (121)
T ss_pred -cCceeeeEEEEhHhCcCCCC------CCCCCCcceEEccCCCCCccceEE
Confidence 79999999999998643211 112223455555555444444433
No 142
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=3e-17 Score=135.46 Aligned_cols=106 Identities=25% Similarity=0.417 Sum_probs=84.7
Q ss_pred EEEEEEEeecCCCCCCCCC-------------CCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCccc
Q psy12482 123 ALEIHVKQCKDLAPVDTKR-------------QRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLE 189 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~-------------~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~ 189 (419)
.|.|+|++|++|+.++... +.+||||+|.+. ..+.+|++++++.||+|||+|.|.+.....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-----g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~- 74 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-----GQKVKTSVKKNSYNPEWNEQIVFPEMFPPL- 74 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-----CEeeecceEcCCCCCCcceEEEEEeeCCCc-
Confidence 3789999999999988541 368999999986 235689999999999999999998654333
Q ss_pred ccEEEEEEEecCCCCCCceeEEEEEeCcccccCCC-------CCceecCccc
Q psy12482 190 CRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP-------SPKCYPLQER 234 (419)
Q Consensus 190 ~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~-------~~~w~~L~~~ 234 (419)
...|.|+|||++..+++++||++.+++.++..... ...|+.|...
T Consensus 75 ~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 75 CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 34899999999999999999999999998755332 2356666543
No 143
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=6.9e-17 Score=130.11 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=88.5
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
.|+|.|++|++|++++.. .+||||+|.+... ....+|.+++++.||+|||.|.|. +. ......|.|+|||++.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~~~kT~~v~~t~nP~Wne~f~f~-~~--~~~~~~L~~~V~d~d~ 74 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KINDRDNYIPNTLNPVFGKMFELE-AT--LPGNSILKISVMDYDL 74 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe---eccceeeEEECCCCCccceEEEEE-ec--CCCCCEEEEEEEECCC
Confidence 479999999999999987 9999999998432 234678888899999999999996 43 2234679999999999
Q ss_pred CCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482 354 LTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES 403 (419)
Q Consensus 354 ~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~ 403 (419)
++++++||++.|++++. .. ..||+.+...|.....+
T Consensus 75 ~~~dd~iG~~~i~l~~~-----------~~---~~~~~~~~~~~~~~~~~ 110 (124)
T cd04037 75 LGSDDLIGETVIDLEDR-----------FF---SKHRATCGLPPTYEESG 110 (124)
T ss_pred CCCCceeEEEEEeeccc-----------cc---chHHHhccCCCcccccC
Confidence 99999999999999762 11 46888888888866443
No 144
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.72 E-value=6.6e-17 Score=130.63 Aligned_cols=108 Identities=27% Similarity=0.415 Sum_probs=92.2
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcc-cccEEEEEEEe
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWH 199 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d 199 (419)
|.|.|+|++|++|+..+.. +.+||||+|++. ...++|++.+ ++.||.|||+|.|.+..... ....|.|+|||
T Consensus 1 g~L~V~V~~A~~L~~~~~~-~~~dpyv~v~~~-----~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 74 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFL-GKIDPYVIIQCR-----TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMD 74 (124)
T ss_pred CeEEEEEEecCCCCCCCCC-CCcCceEEEEEC-----CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEE
Confidence 5799999999999998876 889999999985 2346788777 48999999999999876532 24589999999
Q ss_pred cCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482 200 SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS 235 (419)
Q Consensus 200 ~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~ 235 (419)
.+.++++++||++.+++.++........|+.|.+..
T Consensus 75 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~ 110 (124)
T cd04049 75 KDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK 110 (124)
T ss_pred CccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence 999889999999999999988777789999998853
No 145
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.71 E-value=1e-16 Score=128.28 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=91.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|.|+|++|++|+.. +.+||||++++.. ...++|+++++ .||.|||+|.|.+...++....|.|.+||.+..
T Consensus 2 L~v~vi~a~~l~~~----~~~dpyv~v~~~~----~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~ 72 (117)
T cd08383 2 LRLRILEAKNLPSK----GTRDPYCTVSLDQ----VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK 72 (117)
T ss_pred eEEEEEEecCCCcC----CCCCceEEEEECC----EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccC
Confidence 78999999999876 5789999999952 12478999988 999999999999988776667899999998876
Q ss_pred CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
+++..+|.+.|.. +..+.....|++|.+.... ....|+|++.+.|
T Consensus 73 ~~~~~~g~v~l~~--~~~~~~~~~w~~L~~~~~~----~~~~G~l~l~~~~ 117 (117)
T cd08383 73 DRDIVIGKVALSK--LDLGQGKDEWFPLTPVDPD----SEVQGSVRLRARY 117 (117)
T ss_pred CCeeEEEEEEecC--cCCCCcceeEEECccCCCC----CCcCceEEEEEEC
Confidence 6667777766554 4446667899999876432 2356999999876
No 146
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=9.4e-17 Score=128.87 Aligned_cols=86 Identities=19% Similarity=0.312 Sum_probs=74.2
Q ss_pred EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL 354 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~ 354 (419)
|.|.|++|++|++++.. .+||||+|.+. +....+|+++++++||+|||.|.|+ +... ...|.|+|||++.+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~----~~~~~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~~ 73 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD----NEVIIRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDTL 73 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC----CEeeeeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCCC
Confidence 78999999999999987 99999999983 3345799999999999999999996 5422 25699999999999
Q ss_pred CCCceeEEEEEeCCC
Q psy12482 355 TSNEFLGGIRLNLGH 369 (419)
Q Consensus 355 ~~~~~lG~~~i~l~~ 369 (419)
+++++||++.+++..
T Consensus 74 ~~d~~iG~~~~~~~~ 88 (121)
T cd04054 74 SRDDVIGKVSLTREV 88 (121)
T ss_pred CCCCEEEEEEEcHHH
Confidence 999999999998744
No 147
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.71 E-value=6.8e-17 Score=130.79 Aligned_cols=116 Identities=25% Similarity=0.337 Sum_probs=94.2
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcc--cccEEEEEEEec
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDL--ECRTLWLSVWHS 200 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l--~~~~l~i~v~d~ 200 (419)
|+|+|++|++|+..+.. +.+||||+|++.+ ..+++|++.+ ++.||.|||.|.|.+....+ ....|.|+|||+
T Consensus 2 L~V~V~sA~~L~~~~~~-~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 2 LEITIISAEDLKNVNLF-GKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred EEEEEEEcccCCCCCcc-cCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 78999999999998876 8999999999974 2357888875 68999999999999876542 346899999999
Q ss_pred CCCCCCceeEEEEEeCcccccCCCC-----CceecCccccchhhhhhccccceEE
Q psy12482 201 DMFGRNDFLGEVMMSLENKVFDDPS-----PKCYPLQERSEILDELICSKGELII 250 (419)
Q Consensus 201 ~~~~~~~~iG~~~~~l~~~~~~~~~-----~~w~~L~~~~~~~~~~~~~~G~l~l 250 (419)
+.++++++||++.+++.++...... ..||+|..... +..|.|.+
T Consensus 77 ~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g------~~~G~~~~ 125 (125)
T cd04051 77 RPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG------KPQGVLNF 125 (125)
T ss_pred CCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC------CcCeEEeC
Confidence 9888999999999999998665543 67999986542 34577753
No 148
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.71 E-value=1.3e-17 Score=139.83 Aligned_cols=89 Identities=26% Similarity=0.386 Sum_probs=74.6
Q ss_pred cceEEEEEeccccccccCC------------------------------C-CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482 273 KGSLHVLIKEAKSLCPVKS------------------------------N-TVDAFCKAYLLPDKGRASKHKTGIIKRST 321 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~------------------------------~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~ 321 (419)
-|.|.|+|++|++|+++|. . .+||||+|.+. +....+|++++++.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~----~~~~~rT~v~~~~~ 81 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA----GARVARTRVIENSE 81 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC----CeEeeEEEEeCCCC
Confidence 5899999999999999872 2 68999999983 33457999999999
Q ss_pred CCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
||+|||+|.|. +. ... ..|.|+|+|++.++ +++||.+.|+++++
T Consensus 82 nP~WnE~F~~~-~~--~~~-~~l~~~V~d~d~~~-~~~IG~~~i~l~~l 125 (158)
T cd04015 82 NPVWNESFHIY-CA--HYA-SHVEFTVKDNDVVG-AQLIGRAYIPVEDL 125 (158)
T ss_pred CCccceEEEEE-cc--CCC-CEEEEEEEeCCCcC-CcEEEEEEEEhHHc
Confidence 99999999996 43 222 45999999999886 68999999999874
No 149
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.71 E-value=9.2e-17 Score=129.78 Aligned_cols=99 Identities=13% Similarity=0.286 Sum_probs=76.5
Q ss_pred cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
...|+|+|++|+||+..+ .+||||+|.+ +...+.+|+++ ++.||.|||.|.|+ +....+ ..+.|.|||++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l----~~~~~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~ 72 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH--VPHPYCVISL----NEVKVARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKA 72 (126)
T ss_pred eeEEEEEEEEeeCCCCCC--CCCeeEEEEE----CCEeEEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECC
Confidence 457999999999998743 6899999999 33445678874 58999999999996 433333 45899999999
Q ss_pred CCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 353 RLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 353 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
..+++++||.+.|+|+++..++....||.
T Consensus 73 ~~~~d~~iG~v~i~l~~l~~~~~~~~W~~ 101 (126)
T cd08400 73 KRSKDSEIAEVTVQLSKLQNGQETDEWYP 101 (126)
T ss_pred CCCCCCeEEEEEEEHhHccCCCcccEeEE
Confidence 99999999999999988543333333333
No 150
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=8.6e-17 Score=131.76 Aligned_cols=89 Identities=27% Similarity=0.514 Sum_probs=73.5
Q ss_pred ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCc----cccc--cCeEEE
Q psy12482 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSL----EELS--ERCLEL 346 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~----~~~~--~~~l~i 346 (419)
.+|+|.|++|++|+.++.. .+||||+|.+.. .+++|++++++.||+|||.|.|+.... .++. ...|.|
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v 75 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLN-----QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVV 75 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECC-----eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEE
Confidence 4799999999999999987 999999999842 358999999999999999999962221 1121 245999
Q ss_pred EEEECCCCCCCceeEEEEEeC
Q psy12482 347 TVWDHDRLTSNEFLGGIRLNL 367 (419)
Q Consensus 347 ~V~d~~~~~~~~~lG~~~i~l 367 (419)
+|||++..+++++||++.+..
T Consensus 76 ~V~d~d~~~~d~~iG~~~i~~ 96 (135)
T cd04017 76 ELFDQDSVGKDEFLGRSVAKP 96 (135)
T ss_pred EEEeCcCCCCCccceEEEeee
Confidence 999999999999999999843
No 151
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.70 E-value=7.1e-17 Score=133.42 Aligned_cols=95 Identities=31% Similarity=0.521 Sum_probs=79.1
Q ss_pred CCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCC------------------------cceeecccccCCCCCc
Q psy12482 270 SAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGR------------------------ASKHKTGIIKRSTSPQ 324 (419)
Q Consensus 270 ~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~------------------------~~~~~T~~~~~t~nP~ 324 (419)
.+..+.|.|+|++|+||+++|.+ .+||||+|.+.+.... ...++|.+++++.||+
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 34489999999999999999987 9999999998643221 1347899999999999
Q ss_pred cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~ 371 (419)
|||.|.|. + ..+....|.|+|||++ +++||++.|+++++.
T Consensus 104 WnE~F~f~-v--~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 104 WNETFRFE-V--EDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred cccEEEEE-e--ccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 99999996 4 3445567999999988 899999999998753
No 152
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.70 E-value=5.1e-17 Score=132.20 Aligned_cols=89 Identities=27% Similarity=0.493 Sum_probs=77.7
Q ss_pred ceEEEEEeccccccccCC--C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEE
Q psy12482 274 GSLHVLIKEAKSLCPVKS--N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWD 350 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~--~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d 350 (419)
|.|+|.|++|+||+..+. . .+||||+|.+. ..+++|++++++.||+|||.|.|+ +. ......|.|+|||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~~P~Wne~f~~~-~~--~~~~~~l~i~v~d 72 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-----AQRFKTQTIPNTLNPKWNYWCEFP-IF--SAQNQLLKLILWD 72 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-----CEEEecceecCCcCCccCCcEEEE-ec--CCCCCEEEEEEEE
Confidence 679999999999999887 6 89999999983 245899999999999999999996 43 3445679999999
Q ss_pred CCCCCCCceeEEEEEeCCCC
Q psy12482 351 HDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 351 ~~~~~~~~~lG~~~i~l~~~ 370 (419)
++..+++++||++.|+++++
T Consensus 73 ~~~~~~~~~lG~~~i~l~~~ 92 (128)
T cd04024 73 KDRFAGKDYLGEFDIALEEV 92 (128)
T ss_pred CCCCCCCCcceEEEEEHHHh
Confidence 99998999999999999874
No 153
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1e-16 Score=126.36 Aligned_cols=97 Identities=16% Similarity=0.371 Sum_probs=77.4
Q ss_pred ceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 274 GSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
+.|.|.|++||+|+..+ ..||||+|.+.. .+.+|++.++ .||.|||.|.|. + .+.... |.|+|||++.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~-----~k~kT~v~~~-~nP~WnE~F~F~-~--~~~~~~-L~v~V~dkd~ 69 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD--KFNTYVTLKVQN-----VKSTTIAVRG-SQPCWEQDFMFE-I--NRLDLG-LVIELWNKGL 69 (127)
T ss_pred ceEEEEEEEeeCCCCCC--CCCCeEEEEECC-----EEeEeeECCC-CCCceeeEEEEE-E--cCCCCE-EEEEEEeCCC
Confidence 68999999999997644 469999999932 4578888887 599999999996 4 344444 9999999997
Q ss_pred CCCCceeEEEEEeCCCCCcCCce--eecccCC
Q psy12482 354 LTSNEFLGGIRLNLGHGKHYSKL--VDWMDSS 383 (419)
Q Consensus 354 ~~~~~~lG~~~i~l~~~~~~~~~--~~w~~~~ 383 (419)
+ +|++||++.|+|+++..+... ..||.+.
T Consensus 70 ~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 70 I-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred c-CCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 6 799999999999998655443 5666654
No 154
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.7e-16 Score=126.55 Aligned_cols=106 Identities=27% Similarity=0.440 Sum_probs=91.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|+|.|++|++|+..+.. +.+||||+|++.+ ...++|+++.++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 1 l~v~vi~a~~L~~~~~~-~~~dpyv~v~~~~----~~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~ 73 (115)
T cd04040 1 LTVDVISAENLPSADRN-GKSDPFVKFYLNG----EKVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRG 73 (115)
T ss_pred CEEEEEeeeCCCCCCCC-CCCCCeEEEEECC----CcceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCC
Confidence 57899999999998876 8899999999953 2357999999999999999999998654 355899999999998
Q ss_pred CCCceeEEEEEeCcccccCCCCCceecCccccc
Q psy12482 204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSE 236 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~ 236 (419)
+++++||++.+++.++........|++|.+.+.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~ 106 (115)
T cd04040 74 GKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG 106 (115)
T ss_pred CCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC
Confidence 899999999999999877777788999987543
No 155
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.69 E-value=2.5e-16 Score=129.85 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=76.0
Q ss_pred EEEEecccc--ccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcc------ccccCeEEEE
Q psy12482 277 HVLIKEAKS--LCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLE------ELSERCLELT 347 (419)
Q Consensus 277 ~v~v~~a~~--L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~------~~~~~~l~i~ 347 (419)
.++|..|++ |+..+.+ .+||||++++.....+..+.+|+++++|+||+|||.|.|. ++.. .+....|.|+
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEEE
Confidence 445555555 7777766 8999999998544456778999999999999999999996 7654 3556779999
Q ss_pred EEECCCC-CCCceeEEEEEeCCCC
Q psy12482 348 VWDHDRL-TSNEFLGGIRLNLGHG 370 (419)
Q Consensus 348 V~d~~~~-~~~~~lG~~~i~l~~~ 370 (419)
|||++.+ ++|++||++.|+|+.+
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l 107 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPL 107 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccc
Confidence 9999886 5799999999999884
No 156
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.69 E-value=1.2e-16 Score=128.61 Aligned_cols=99 Identities=23% Similarity=0.460 Sum_probs=79.4
Q ss_pred ceEEEEEeccccccccCC------C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEE
Q psy12482 274 GSLHVLIKEAKSLCPVKS------N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLEL 346 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~------~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i 346 (419)
|.|+|+|++|+||+..+. . .+||||+|.+.. ..++|++++++.||+|||.|.|. +.. .....|.|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~~P~W~e~f~~~-v~~--~~~~~l~i 72 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-----QTFKSKVIKENLNPKWNEVYEAV-VDE--VPGQELEI 72 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-----EeEEccccCCCCCCcccceEEEE-eCC--CCCCEEEE
Confidence 579999999999998874 2 789999999842 56899999999999999999996 532 23467999
Q ss_pred EEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 347 TVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 347 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
+|||++.. ++++||.+.++++++..++....||.
T Consensus 73 ~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~ 106 (121)
T cd08391 73 ELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLP 106 (121)
T ss_pred EEEecCCC-CCCcEEEEEEEHHHhcccCccceEEE
Confidence 99999988 89999999999987543333333333
No 157
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.69 E-value=2.2e-16 Score=126.50 Aligned_cols=94 Identities=23% Similarity=0.391 Sum_probs=77.7
Q ss_pred CCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482 270 SAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTV 348 (419)
Q Consensus 270 ~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 348 (419)
....+.|.|+|++|++|+. +.. .+||||+|.+.+ .+++|++++++.||+|||+|.|..... .....|.|+|
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-----~~~kT~vi~~t~nPvWNE~F~f~~~~~--~~~~~L~v~V 95 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-----QEKRTEVIWNNNNPRWNATFDFGSVEL--SPGGKLRFEV 95 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-----ccccCceecCCCCCcCCCEEEEecccC--CCCCEEEEEE
Confidence 3447999999999999984 444 889999999832 268999999999999999999951222 2346699999
Q ss_pred EECCCCCCCceeEEEEEeCCCCC
Q psy12482 349 WDHDRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 349 ~d~~~~~~~~~lG~~~i~l~~~~ 371 (419)
||++..+++++||++.++|+.+.
T Consensus 96 ~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 96 WDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EeCCCCCCCCeeEEEEEEecCCc
Confidence 99999999999999999998743
No 158
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.69 E-value=1.4e-16 Score=130.40 Aligned_cols=92 Identities=23% Similarity=0.495 Sum_probs=78.1
Q ss_pred EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcc-------------cccc
Q psy12482 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLE-------------ELSE 341 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~-------------~~~~ 341 (419)
|+|.|++|+||+.+ .. .+||||+|.+... ....+++|++++++.||.|||.|.|. +... ++..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEK 77 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEE-ccccccccccccccccccccc
Confidence 57999999999988 55 8999999999643 33567899999999999999999997 4432 3456
Q ss_pred CeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 342 RCLELTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 342 ~~l~i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
..|.|+|||++..+++++||++.|++.++
T Consensus 78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l 106 (137)
T cd08675 78 SELRVELWHASMVSGDDFLGEVRIPLQGL 106 (137)
T ss_pred cEEEEEEEcCCcCcCCcEEEEEEEehhhc
Confidence 77999999999988999999999999874
No 159
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.69 E-value=1.7e-16 Score=127.33 Aligned_cols=104 Identities=27% Similarity=0.427 Sum_probs=87.2
Q ss_pred EEEeecCCCCCCCCCCCCCcEEEEEEeCCC--CCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC--
Q psy12482 127 HVKQCKDLAPVDTKRQRSDPYVKVYLLPDK--SKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM-- 202 (419)
Q Consensus 127 ~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~--~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~-- 202 (419)
..++|++|+..+.. +.+||||+|++.+.. .....++|++++++.||+|||+|.|.+..+.. ..|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~-g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVL-SKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCC-CCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEecCCc
Confidence 45789999999987 889999999998653 33346899999999999999999998654443 389999999997
Q ss_pred --CCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 203 --FGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 203 --~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
.+++++||++.+++.++........|+.|.+
T Consensus 82 ~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 7899999999999999887777778888843
No 160
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.3e-16 Score=126.19 Aligned_cols=106 Identities=27% Similarity=0.430 Sum_probs=90.3
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
|.|+|+|++|++|+..+.. +.+||||++++.. ..+++|++++++.||.|||+|.|.+... ...|.|+|||++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~-g~~DPYv~v~~~~----~~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~ 72 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGV-GKIDPYVRVLVNG----IVKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYE 72 (120)
T ss_pred CeEEEEEEeeECCCCccCC-CCcCCEEEEEECC----EEeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECC
Confidence 5789999999999999876 8999999999942 1357899999999999999999987553 358999999999
Q ss_pred CCCCCceeEEEEEeCcccccCCCCCceecCccccc
Q psy12482 202 MFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSE 236 (419)
Q Consensus 202 ~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~ 236 (419)
..+++++||++.+++.++... +...||.|....+
T Consensus 73 ~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~ 106 (120)
T cd04045 73 KVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEE 106 (120)
T ss_pred CCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCCc
Confidence 999999999999999997654 7788988876543
No 161
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.69 E-value=2.8e-16 Score=125.91 Aligned_cols=92 Identities=24% Similarity=0.313 Sum_probs=77.4
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
.+.|+|+|++|++|+. +.. +.+||||+|++. ..++||++++++.||+|||+|.|...... ....|.|+|||+
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~-g~~DPYVkV~~~-----~~~~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D~ 98 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYF-TSTDGYVKVFFG-----GQEKRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWDR 98 (127)
T ss_pred cEEEEEEEEECCCCCc-CcC-CCCCeEEEEEEC-----CccccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEeC
Confidence 5789999999999984 554 789999999995 22689999999999999999999742211 355999999999
Q ss_pred CCCCCCceeEEEEEeCcccc
Q psy12482 201 DMFGRNDFLGEVMMSLENKV 220 (419)
Q Consensus 201 ~~~~~~~~iG~~~~~l~~~~ 220 (419)
+..+++++||++.++|....
T Consensus 99 d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 99 DNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCCeeEEEEEEecCCc
Confidence 99999999999999998643
No 162
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=1.7e-16 Score=129.89 Aligned_cols=125 Identities=23% Similarity=0.326 Sum_probs=91.2
Q ss_pred EEEEEeccccccccCCC-CCCcEEEEEEeCC--CCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPD--KGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~--~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
|+|+|++|+||+..+.. .+||||+|.+.+. +....+++|.+++++.||+|||.|.|. +... ...|.|+|||++
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~ 77 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDEN 77 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEECC
Confidence 78999999999998877 8999999999754 223346799999999999999999996 5432 356999999999
Q ss_pred CCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCC-CceEEeeeeccC
Q psy12482 353 RLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERP-NFWVESCIPLRS 409 (419)
Q Consensus 353 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p-~~~i~~w~~l~~ 409 (419)
.++++++||++.|+++++....... .+.....|+++.... .....|...|.+
T Consensus 78 ~~~~~~~iG~~~i~l~~l~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~G~l~~~~ 130 (133)
T cd04033 78 RLTRDDFLGQVEVPLNNLPTETPGN-----ERRYTFKDYLLRPRSSKSRVKGHLRLYM 130 (133)
T ss_pred CCCCCCeeEEEEEEHHHCCCcCccc-----cccccchheeeeecCCCCcceeEEEEEE
Confidence 9999999999999998864331110 012244566554221 223556655544
No 163
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.68 E-value=3.9e-16 Score=121.43 Aligned_cols=85 Identities=22% Similarity=0.316 Sum_probs=72.5
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec---
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS--- 200 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~--- 200 (419)
|.|+|++|+||. +.+||||++++.+.+....+.||+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEcccc
Confidence 679999999995 56899999999876654457999999999999999999999853 44999999998
Q ss_pred ----CCCCCCceeEEEEEeCcc
Q psy12482 201 ----DMFGRNDFLGEVMMSLEN 218 (419)
Q Consensus 201 ----~~~~~~~~iG~~~~~l~~ 218 (419)
+..++|++||.+.+.|+-
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccCcccEEEEEEEEECH
Confidence 456789999998888764
No 164
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.68 E-value=2.1e-16 Score=129.94 Aligned_cols=88 Identities=25% Similarity=0.374 Sum_probs=77.4
Q ss_pred ceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 274 GSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
|.|+|+|++|+||+..+...+||||++.+. ..+++|++++++.||+|||.|.|. ++. . ...|.|+|||++.
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g-----~~~~kT~vvk~t~nP~WnE~f~f~-i~~--~-~~~l~~~V~D~d~ 72 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLG-----NQKVKTRVIKKNLNPVWNEELTLS-VPN--P-MAPLKLEVFDKDT 72 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEEC-----CEEEEeeeEcCCCCCeecccEEEE-ecC--C-CCEEEEEEEECCC
Confidence 789999999999998776789999999983 246899999999999999999996 542 2 4669999999999
Q ss_pred CCCCceeEEEEEeCCCC
Q psy12482 354 LTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 354 ~~~~~~lG~~~i~l~~~ 370 (419)
++++++||.+.+++.++
T Consensus 73 ~~~dd~iG~a~i~l~~l 89 (145)
T cd04038 73 FSKDDSMGEAEIDLEPL 89 (145)
T ss_pred CCCCCEEEEEEEEHHHh
Confidence 99999999999999874
No 165
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.4e-16 Score=126.10 Aligned_cols=120 Identities=27% Similarity=0.425 Sum_probs=90.5
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|+|.|++|++|+..+.. +.+||||++++.... ...+|++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus 2 lrV~Vi~a~~L~~~d~~-g~~DPYv~v~~~~~~---~~~kT~~v~~t~nP~Wne~f~f~~~~~--~~~~L~~~V~d~d~~ 75 (124)
T cd04037 2 VRVYVVRARNLQPKDPN-GKSDPYLKIKLGKKK---INDRDNYIPNTLNPVFGKMFELEATLP--GNSILKISVMDYDLL 75 (124)
T ss_pred EEEEEEECcCCCCCCCC-CCCCcEEEEEECCee---ccceeeEEECCCCCccceEEEEEecCC--CCCEEEEEEEECCCC
Confidence 78999999999999987 899999999996322 236788888999999999999986443 345899999999999
Q ss_pred CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
+++++||++.+++++... ..+|+........ ...|.++....+.|.
T Consensus 76 ~~dd~iG~~~i~l~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 121 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF---SKHRATCGLPPTY-----EESGPNQWRDSLKPS 121 (124)
T ss_pred CCCceeEEEEEeeccccc---chHHHhccCCCcc-----cccCceecCcccCcc
Confidence 999999999999998543 2234333222221 134777666655553
No 166
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.67 E-value=2.1e-16 Score=127.95 Aligned_cols=98 Identities=16% Similarity=0.297 Sum_probs=77.8
Q ss_pred EEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCC
Q psy12482 276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLT 355 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~ 355 (419)
|.|+|++|+||+. ..+.+||||++.+.. ...+++|++++++.||+|||.|.|. +.. ....|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~~~---~~~~l~~~v~d~~~~~ 72 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLFE-LSP---NSKELLFEVYDNGKKS 72 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECC---CCcEEEeEEEecCCCCccCceEEEE-eCC---CCCEEEEEEEECCCCC
Confidence 5799999999988 333899999999831 2356899999999999999999996 642 2356999999999999
Q ss_pred CCceeEEEEEeCCCCCcCCceeeccc
Q psy12482 356 SNEFLGGIRLNLGHGKHYSKLVDWMD 381 (419)
Q Consensus 356 ~~~~lG~~~i~l~~~~~~~~~~~w~~ 381 (419)
++++||++.++++.+........|+.
T Consensus 73 ~~~~lG~~~i~l~~l~~~~~~~~~~~ 98 (126)
T cd08678 73 DSKFLGLAIVPFDELRKNPSGRQIFP 98 (126)
T ss_pred CCceEEEEEEeHHHhccCCceeEEEE
Confidence 99999999999987544333333333
No 167
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.67 E-value=2.8e-16 Score=126.53 Aligned_cols=88 Identities=19% Similarity=0.340 Sum_probs=76.1
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
.|+|+|++|++|+.++.. .+||||++.+. ....++|++++++.||+|||.|.|. +.. ...|.|+|||++.
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~----~~~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~ 71 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD----GGQTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKK 71 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC----CccceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCC
Confidence 389999999999998877 89999999983 2456899999999999999999996 543 4679999999998
Q ss_pred CCC--CceeEEEEEeCCCCC
Q psy12482 354 LTS--NEFLGGIRLNLGHGK 371 (419)
Q Consensus 354 ~~~--~~~lG~~~i~l~~~~ 371 (419)
+++ +++||++.++++++.
T Consensus 72 ~~~~~d~~lG~~~i~l~~l~ 91 (123)
T cd08382 72 FKKKDQGFLGCVRIRANAVL 91 (123)
T ss_pred CCCCCCceEeEEEEEHHHcc
Confidence 875 589999999998853
No 168
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.67 E-value=2.4e-16 Score=127.29 Aligned_cols=103 Identities=20% Similarity=0.321 Sum_probs=82.5
Q ss_pred ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccC-CCCCccccEEEEcccCcccc-ccCeEEEEEEE
Q psy12482 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKR-STSPQWNHTVVYRDVSLEEL-SERCLELTVWD 350 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~-t~nP~wne~f~f~~v~~~~~-~~~~l~i~V~d 350 (419)
|.|.|+|++|+||+..+.. .+||||+|.+.. ..++|++..+ +.||+|||.|.|. +..... ....|.|+|||
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d 74 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-----QERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMD 74 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-----EeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEE
Confidence 6899999999999998877 899999999832 3467777774 8999999999996 654422 34569999999
Q ss_pred CCCCCCCceeEEEEEeCCCCCcCCceeecccC
Q psy12482 351 HDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDS 382 (419)
Q Consensus 351 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~ 382 (419)
++.++++++||.+.|+++++...+....|+.+
T Consensus 75 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 75 KDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred CccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 99999999999999999886555444455443
No 169
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=2.6e-16 Score=125.87 Aligned_cols=90 Identities=20% Similarity=0.392 Sum_probs=77.9
Q ss_pred ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
|.|+|+|++|++|+..+.. .+||||+|.+ +...+++|+++.++.||+|||.|.|+ +... ...|.|+|||++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~----~~~~~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~ 72 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLV----NGIVKGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYE 72 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEE----CCEEeeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECC
Confidence 6799999999999998877 9999999998 33466899999999999999999996 4322 256999999999
Q ss_pred CCCCCceeEEEEEeCCCCC
Q psy12482 353 RLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 353 ~~~~~~~lG~~~i~l~~~~ 371 (419)
..+++++||++.++++++.
T Consensus 73 ~~~~d~~IG~~~~~l~~l~ 91 (120)
T cd04045 73 KVGKDRSLGSVEINVSDLI 91 (120)
T ss_pred CCCCCCeeeEEEEeHHHhh
Confidence 9999999999999998753
No 170
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.66 E-value=1.6e-15 Score=122.98 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=77.2
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
.|.|+|++|++|+.++.. .+||||++.+... ....++|++++++.||.|||.|.|. +... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d~ 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG--KRRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRSF 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCC--CeeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECCC
Confidence 689999999999999887 8999999987432 2456899999999999999999996 5443 34669999999999
Q ss_pred CCCCceeEEEEEeCCC
Q psy12482 354 LTSNEFLGGIRLNLGH 369 (419)
Q Consensus 354 ~~~~~~lG~~~i~l~~ 369 (419)
.+++++||++.++|+.
T Consensus 77 ~~~~~~iG~~~i~l~~ 92 (126)
T cd04043 77 VGKHDLCGRASLKLDP 92 (126)
T ss_pred CCCCceEEEEEEecCH
Confidence 9899999999999976
No 171
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.66 E-value=5.3e-16 Score=124.46 Aligned_cols=88 Identities=28% Similarity=0.520 Sum_probs=76.3
Q ss_pred ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
|.|.|+|++|+||+.++.. .+||||+|.+.. ..++|++++++.||.|||+|.|+ +. ++ ...|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~~~-~~--~~-~~~l~~~v~d~~ 71 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-----ARLQTHTIYKTLNPEWNKIFTFP-IK--DI-HDVLEVTVYDED 71 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-----EeeecceecCCcCCccCcEEEEE-ec--Cc-CCEEEEEEEECC
Confidence 6899999999999998887 899999999842 24799999999999999999996 43 22 356999999999
Q ss_pred CCCCCceeEEEEEeCCCC
Q psy12482 353 RLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 353 ~~~~~~~lG~~~i~l~~~ 370 (419)
..+++++||++.+++.++
T Consensus 72 ~~~~~~~iG~~~~~l~~~ 89 (119)
T cd08377 72 KDKKPEFLGKVAIPLLSI 89 (119)
T ss_pred CCCCCceeeEEEEEHHHC
Confidence 988999999999999774
No 172
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.65 E-value=2.4e-15 Score=122.34 Aligned_cols=122 Identities=24% Similarity=0.345 Sum_probs=94.7
Q ss_pred CEEEEEEEeecCCCCCC--CCCCCCCcEEEEEEeCCCC-CCCeeecccccCCC-CceeccEEEEEcccCcccccEEEEEE
Q psy12482 122 GALEIHVKQCKDLAPVD--TKRQRSDPYVKVYLLPDKS-KAGKRKTRVKKHTL-SPVFDEVLKFQLTLEDLECRTLWLSV 197 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~--~~~~~~dpyv~v~l~~~~~-~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~l~~~~l~i~v 197 (419)
..|+|+|++|++|+..+ .. +..||||++++...+. ...+++|++++++. ||.|||+|.|.+...+ ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKG-SIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCC-CccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEE
Confidence 36899999999999887 34 7889999999975543 34578999987765 9999999999987544 34799999
Q ss_pred EecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 198 WHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
||.+.. ++++||++.+++.++.. ...|++|...... ....|.|.+.+.+
T Consensus 79 ~d~~~~-~~~~iG~~~~~l~~l~~---g~~~~~l~~~~~~----~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG-DDDFLGQACLPLDSLRQ---GYRHVPLLDSKGE----PLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC-CCcEeEEEEEEhHHhcC---ceEEEEecCCCCC----CCcceeEEEEEEE
Confidence 999987 89999999999998743 2367888654332 1233788877754
No 173
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=8.7e-16 Score=126.26 Aligned_cols=90 Identities=38% Similarity=0.510 Sum_probs=80.0
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
|.|+|+|++|++|+..+. +.+||||++++. ..+++|++++++.||+|||.|.|.+... ...|.|+|||++
T Consensus 2 G~L~V~Vi~a~nL~~~d~--~~sDPYV~v~~g-----~~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d 71 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF--TSSDPYVVLTLG-----NQKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKD 71 (145)
T ss_pred eEEEEEEEeeECCCCCCC--CCcCcEEEEEEC-----CEEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECC
Confidence 679999999999998875 679999999995 3478999999999999999999998653 558999999999
Q ss_pred CCCCCceeEEEEEeCccccc
Q psy12482 202 MFGRNDFLGEVMMSLENKVF 221 (419)
Q Consensus 202 ~~~~~~~iG~~~~~l~~~~~ 221 (419)
.++++++||++.+++.++..
T Consensus 72 ~~~~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 72 TFSKDDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCCCCCEEEEEEEEHHHhhh
Confidence 99999999999999988653
No 174
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.65 E-value=8.7e-16 Score=125.43 Aligned_cols=90 Identities=24% Similarity=0.379 Sum_probs=77.0
Q ss_pred cceEEEEEeccccccccCC-----------CCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcccccc
Q psy12482 273 KGSLHVLIKEAKSLCPVKS-----------NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSE 341 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~-----------~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~ 341 (419)
.|.|+|+|++|++|+..+. +.+||||++.+. .....+|++++++.||.|||.|.|. +. ..
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~----~~~~~kT~~~~~t~~P~Wne~f~~~-v~----~~ 73 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD----DTHIGKTSTKPKTNSPVWNEEFTTE-VH----NG 73 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC----CEEEeEEeEcCCCCCCCcceeEEEE-cC----CC
Confidence 5889999999999998875 268999999983 3345689999999999999999996 64 23
Q ss_pred CeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482 342 RCLELTVWDHDRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 342 ~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~ 371 (419)
..|.|.|||++..+++++||.+.++|+++.
T Consensus 74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~ 103 (132)
T cd04014 74 RNLELTVFHDAAIGPDDFVANCTISFEDLI 103 (132)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEhHHhc
Confidence 669999999999889999999999998743
No 175
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.65 E-value=8.6e-16 Score=119.50 Aligned_cols=85 Identities=18% Similarity=0.347 Sum_probs=70.9
Q ss_pred EEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC----
Q psy12482 276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH---- 351 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~---- 351 (419)
|.|+|.+|+||+. .+||||++.+.+.+....+.+|+++++|+||+|||.|.|. +.. ..+|.+.|||+
T Consensus 1 L~V~V~~A~~L~~----~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~~----s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFKQ----SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LEG----SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCCC----CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eCC----CCEEEEEEEEccccc
Confidence 6799999999963 5899999998765444567999999999999999999997 542 35799999998
Q ss_pred ---CCCCCCceeEEEEEeCCC
Q psy12482 352 ---DRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 352 ---~~~~~~~~lG~~~i~l~~ 369 (419)
|..++|+++|.+.|.|+.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccCcccEEEEEEEEECH
Confidence 567889999888887754
No 176
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.64 E-value=1.8e-15 Score=123.54 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=95.6
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
..|.|.|++|++|+.++ +|||.|.|.. ....+|+++.++.||.|+|.|.|..... -..|.|.||..+
T Consensus 11 ~sL~v~V~EAk~Lp~~~------~~Y~~i~Ld~----~~vaRT~v~~~~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~ 77 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK------RYYCELCLDK----TLYARTTSKLKTDTLFWGEHFEFSNLPP---VSVITVNLYRES 77 (146)
T ss_pred EEEEEEEEEccCCCCcC------CceEEEEECC----EEEEEEEEEcCCCCCcceeeEEecCCCc---ccEEEEEEEEcc
Confidence 56999999999998653 7999999962 2246999999999999999999974432 247999998654
Q ss_pred C-CC---CCceeEEEEEeCcccccCCCCCceecCccccchhh----hhhccccceEEEEEEeCC
Q psy12482 202 M-FG---RNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILD----ELICSKGELIIGLKFVPP 257 (419)
Q Consensus 202 ~-~~---~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~----~~~~~~G~l~l~l~~~~~ 257 (419)
. .+ ++.+||.+.|++.++..+...+.||+|.+...... ......+.|++++.|.+.
T Consensus 78 ~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 78 DKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 3 22 57899999999999988888899999976654320 012334799999999875
No 177
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.64 E-value=9.6e-16 Score=122.96 Aligned_cols=99 Identities=22% Similarity=0.286 Sum_probs=78.9
Q ss_pred EEeccccccccCCC-CCCcEEEEEEeCCC--CCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC--
Q psy12482 279 LIKEAKSLCPVKSN-TVDAFCKAYLLPDK--GRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR-- 353 (419)
Q Consensus 279 ~v~~a~~L~~~~~~-~~dpyV~v~~~~~~--~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~-- 353 (419)
..++|++|+..+.. .+||||+|.+.... +....++|++++++.||+|||.|.|. +..... ..|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~~--~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEEV--QKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEee--eEEEEEEEEecCCc
Confidence 45889999998877 89999999997653 34557899999999999999999995 443332 469999999997
Q ss_pred --CCCCceeEEEEEeCCCCCcCCceeecc
Q psy12482 354 --LTSNEFLGGIRLNLGHGKHYSKLVDWM 380 (419)
Q Consensus 354 --~~~~~~lG~~~i~l~~~~~~~~~~~w~ 380 (419)
.+++++||++.++++++........|+
T Consensus 82 ~~~~~~d~iG~~~i~l~~l~~~~~~~~~~ 110 (120)
T cd04048 82 KDLSDHDFLGEAECTLGEIVSSPGQKLTL 110 (120)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCCCcEEEE
Confidence 789999999999998754433333333
No 178
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.6e-15 Score=119.69 Aligned_cols=101 Identities=24% Similarity=0.316 Sum_probs=82.6
Q ss_pred CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccc
Q psy12482 141 RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKV 220 (419)
Q Consensus 141 ~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~ 220 (419)
.|.+||||+|++.. ...++|++++++.||.|||.|.|.+... ....|.|.|||.+.+ ++++||++.++|+++.
T Consensus 10 ~G~~dPYv~v~v~~----~~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 10 TGLLSPYAELYLNG----KLVYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDLI 82 (111)
T ss_pred CCCCCceEEEEECC----EEEEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHHH
Confidence 37899999999952 1257899999999999999999988543 355899999999988 8999999999999874
Q ss_pred cC-CCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 221 FD-DPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 221 ~~-~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
.. .....|++|... ..|+|++++.|.|.
T Consensus 83 ~~~~~~~~w~~L~~~---------~~G~i~~~~~~~p~ 111 (111)
T cd04052 83 DATSVGQQWFPLSGN---------GQGRIRISALWKPV 111 (111)
T ss_pred hhhhccceeEECCCC---------CCCEEEEEEEEecC
Confidence 33 345789999852 23999999999873
No 179
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.63 E-value=9e-16 Score=124.29 Aligned_cols=88 Identities=20% Similarity=0.384 Sum_probs=73.4
Q ss_pred ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
..|+|+|++|++|+..+.. .+||||+|.+.. .+++|+++.++.||.|||.|.|. +.. . ...|.|+|||++
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~v~~t~~P~Wne~f~f~-~~~--~-~~~l~i~v~d~d 71 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGK-----TKKRTKTIPQNLNPVWNEKFHFE-CHN--S-SDRIKVRVWDED 71 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECC-----EeeecceecCCCCCccceEEEEE-ecC--C-CCEEEEEEEECC
Confidence 3689999999999999877 899999999832 35799999999999999999996 422 1 246999999998
Q ss_pred CC-----------CCCceeEEEEEeCCCC
Q psy12482 353 RL-----------TSNEFLGGIRLNLGHG 370 (419)
Q Consensus 353 ~~-----------~~~~~lG~~~i~l~~~ 370 (419)
.. +.+++||++.+++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~iG~~~i~l~~~ 100 (127)
T cd04027 72 DDIKSRLKQKFTRESDDFLGQTIIEVRTL 100 (127)
T ss_pred CCcccccceeccccCCCcceEEEEEhHHc
Confidence 52 5689999999999763
No 180
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=1.6e-15 Score=120.88 Aligned_cols=89 Identities=29% Similarity=0.421 Sum_probs=76.1
Q ss_pred EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL 354 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~ 354 (419)
|+|.|++|++|+..+.. .+||||+|.+. ....++|+++.++.||+|||.|.|. ++. .....+.|+|||++..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~----~~~~~~T~v~~~~~~P~Wne~f~~~-~~~--~~~~~l~~~v~d~~~~ 73 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN----GEKVFKTKTIKKTLNPVWNESFEVP-VPS--RVRAVLKVEVYDWDRG 73 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC----CCcceeeceecCCCCCcccccEEEE-ecc--CCCCEEEEEEEeCCCC
Confidence 57999999999998876 89999999983 2445899999999999999999996 542 2446699999999999
Q ss_pred CCCceeEEEEEeCCCCC
Q psy12482 355 TSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 355 ~~~~~lG~~~i~l~~~~ 371 (419)
+++++||++.+++.++.
T Consensus 74 ~~~~~iG~~~~~l~~l~ 90 (115)
T cd04040 74 GKDDLLGSAYIDLSDLE 90 (115)
T ss_pred CCCCceEEEEEEHHHcC
Confidence 99999999999997743
No 181
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=1.7e-15 Score=121.32 Aligned_cols=96 Identities=25% Similarity=0.405 Sum_probs=81.6
Q ss_pred eEEEEEeccccccccCC--C---CCCcEEEEEEeCCCCCcceeecccccCCCC--CccccEEEEcccCc-----------
Q psy12482 275 SLHVLIKEAKSLCPVKS--N---TVDAFCKAYLLPDKGRASKHKTGIIKRSTS--PQWNHTVVYRDVSL----------- 336 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~--~---~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n--P~wne~f~f~~v~~----------- 336 (419)
.|+|.|++|+|++..+. . .+||||++.+.+. ...+++|.++++++| |+||+.|.|+ ++.
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~ 77 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIK 77 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEe
Confidence 48999999999775443 2 5999999999764 467899999999999 9999999997 655
Q ss_pred ----------cccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcC
Q psy12482 337 ----------EELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHY 373 (419)
Q Consensus 337 ----------~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~ 373 (419)
+.+....|.|+|||.|.+++|++||.++|+|..+...
T Consensus 78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 5566788999999999999999999999999875433
No 182
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=3.4e-15 Score=120.44 Aligned_cols=118 Identities=26% Similarity=0.353 Sum_probs=90.2
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
..|.|+|.+|+ |...+.. +.+||||+|++... ...+|++++++.||+|||+|.|.+.. ...|.|+|||++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~-~~~dPyv~v~~~~~----~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~ 71 (125)
T cd04021 2 SQLQITVESAK-LKSNSKS-FKPDPYVEVTVDGQ----PPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHH 71 (125)
T ss_pred ceEEEEEEeeE-CCCCCcC-CCCCeEEEEEECCc----ccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCC
Confidence 36899999998 5555545 78999999999521 36899999999999999999999754 348999999999
Q ss_pred CCCCCceeEEEEEeCcccccCCC-----CCceecCccccchhhhhhccccceEEEE
Q psy12482 202 MFGRNDFLGEVMMSLENKVFDDP-----SPKCYPLQERSEILDELICSKGELIIGL 252 (419)
Q Consensus 202 ~~~~~~~iG~~~~~l~~~~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~l~l 252 (419)
..+++++||++.++|.++..... ...|+++...... .....|+|.+.+
T Consensus 72 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G~~~~~~ 124 (125)
T cd04021 72 TLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKG---SSVKVGELTVIL 124 (125)
T ss_pred CCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCC---cceeeeeEEEEe
Confidence 99899999999999998754322 2247887654421 234458887754
No 183
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.62 E-value=1.4e-15 Score=122.99 Aligned_cols=93 Identities=20% Similarity=0.363 Sum_probs=77.4
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeeccccc-CCCCCccccEEEEcccCcccc--ccCeEEEEEEE
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIK-RSTSPQWNHTVVYRDVSLEEL--SERCLELTVWD 350 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~-~t~nP~wne~f~f~~v~~~~~--~~~~l~i~V~d 350 (419)
.|+|+|++|++|+..+.. .+||||+|.+.. ..+++|++.. ++.||+|||.|.|. ++...+ ....|.|+|||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d 75 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYC 75 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEE
Confidence 389999999999998876 899999999953 3457888875 58999999999996 655432 34669999999
Q ss_pred CCCCCCCceeEEEEEeCCCCCc
Q psy12482 351 HDRLTSNEFLGGIRLNLGHGKH 372 (419)
Q Consensus 351 ~~~~~~~~~lG~~~i~l~~~~~ 372 (419)
++.++++++||.+.|++.++..
T Consensus 76 ~~~~~~~~~lG~~~i~l~~l~~ 97 (125)
T cd04051 76 ERPSLGDKLIGEVRVPLKDLLD 97 (125)
T ss_pred CCCCCCCCcEEEEEEEHHHhhc
Confidence 9998899999999999988543
No 184
>KOG1326|consensus
Probab=99.62 E-value=1.2e-15 Score=152.22 Aligned_cols=244 Identities=24% Similarity=0.380 Sum_probs=163.1
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~ 201 (419)
-.++|+|++|-+|.+.|.+ |.+||||++.++. +...-+...+.+|+||+|++.|.+.... .....+.+.|||+|
T Consensus 613 ~LvrVyvv~A~~L~p~D~n-g~adpYv~l~lGk---~~~~d~~~yip~tlnPVfgkmfel~~~l--p~ek~l~v~vyd~D 686 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGN-GDADPYVKLLLGK---KRTLDRAHYIPNTLNPVFGKMFELECLL--PFEKDLIVEVYDHD 686 (1105)
T ss_pred eeEEEEEEEeeeccccCCC-CCcCceeeeeecc---chhhhhhhcCcCCCCcHHHHHHHhhccc--chhhcceeEEEEee
Confidence 4577999999999999998 9999999999962 2223577788999999999987776433 23558999999999
Q ss_pred CCCCCceeEEEEEeCcccccC--------------CCCCceecCccccchhhhh--------------------------
Q psy12482 202 MFGRNDFLGEVMMSLENKVFD--------------DPSPKCYPLQERSEILDEL-------------------------- 241 (419)
Q Consensus 202 ~~~~~~~iG~~~~~l~~~~~~--------------~~~~~w~~L~~~~~~~~~~-------------------------- 241 (419)
..++++.||+..++|++--.. .....|+.-.+........
T Consensus 687 ~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~~ 766 (1105)
T KOG1326|consen 687 LEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESDI 766 (1105)
T ss_pred cccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhhh
Confidence 999999999999999863110 1123344322222211110
Q ss_pred -----------------------------------------------hccccceEEEEEEeCCCCCccccccccCCCCcc
Q psy12482 242 -----------------------------------------------ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKG 274 (419)
Q Consensus 242 -----------------------------------------------~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~ 274 (419)
.-.+|++.+=+.+.|.....+.-......+...
T Consensus 767 ~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~ 846 (1105)
T KOG1326|consen 767 YDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKY 846 (1105)
T ss_pred hcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhe
Confidence 011112222111222111111111222344568
Q ss_pred eEEEEEeccccccccCCC-----CCCcEEEEEEeCCCCCcceeecccccCCCC--CccccEEEEc--ccCccccc-----
Q psy12482 275 SLHVLIKEAKSLCPVKSN-----TVDAFCKAYLLPDKGRASKHKTGIIKRSTS--PQWNHTVVYR--DVSLEELS----- 340 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-----~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n--P~wne~f~f~--~v~~~~~~----- 340 (419)
.++|.|+.-.++...|.+ ++|.||+-.+.++ ...+++|.++++++. -.||-.|.|+ -.+.++++
T Consensus 847 ~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gd--ee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kk 924 (1105)
T KOG1326|consen 847 ELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGD--EEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKK 924 (1105)
T ss_pred eEEEEEeeccceeecCccceeeeccceEEecccccc--hhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhh
Confidence 899999999988776653 7999999998643 356799999998763 4677666664 12222221
Q ss_pred -------------cCeEEEEEEECCCCCCCceeEEEEEeCCCCCcC
Q psy12482 341 -------------ERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHY 373 (419)
Q Consensus 341 -------------~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~ 373 (419)
...|.|+|||.|.+++|++||..+|+|++.+..
T Consensus 925 e~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~p 970 (1105)
T KOG1326|consen 925 EYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAP 970 (1105)
T ss_pred hhccccccccccCchheEEEecccCccChhhhhhheeechhhCcCC
Confidence 233999999999999999999999999985433
No 185
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=2.8e-15 Score=121.17 Aligned_cols=91 Identities=26% Similarity=0.350 Sum_probs=77.7
Q ss_pred ceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482 274 GSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH 351 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 351 (419)
|.|.|+|++|+||+..+.. .+||||++.+... ...++|+++.++.||+|||.|.|. +. .....|.|+|||+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~-v~---~~~~~l~~~v~d~ 74 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYIL-VN---SLTEPLNLTVYDF 74 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEE-eC---CCCCEEEEEEEec
Confidence 7899999999999976543 6899999999532 456899999999999999999996 54 2245699999999
Q ss_pred CCCCCCceeEEEEEeCCCCC
Q psy12482 352 DRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 352 ~~~~~~~~lG~~~i~l~~~~ 371 (419)
+..+++++||.+.++++++.
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~ 94 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLL 94 (124)
T ss_pred CCCCCCceeEEEEEEHHHhc
Confidence 99989999999999998854
No 186
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.62 E-value=3.8e-15 Score=121.14 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=75.5
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCC--------cceeecccccCCCCCcc-ccEEEEcccCccccccCeE
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGR--------ASKHKTGIIKRSTSPQW-NHTVVYRDVSLEELSERCL 344 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~--------~~~~~T~~~~~t~nP~w-ne~f~f~~v~~~~~~~~~l 344 (419)
.+.|++++|+||+ .+.. ++||||++.+.++... ..+++|.++++++||+| ||.|.|. +..+ ..|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~~~----~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GLPT----DVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cCCC----CEE
Confidence 4679999999998 5555 9999999999754432 35799999999999999 9999996 6433 459
Q ss_pred EEEEEECCCCCC---CceeEEEEEeCCCCCcC
Q psy12482 345 ELTVWDHDRLTS---NEFLGGIRLNLGHGKHY 373 (419)
Q Consensus 345 ~i~V~d~~~~~~---~~~lG~~~i~l~~~~~~ 373 (419)
.|+|||++..++ +++||++.|+++++...
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhccc
Confidence 999999876544 79999999999886433
No 187
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=1.1e-15 Score=123.91 Aligned_cols=93 Identities=20% Similarity=0.252 Sum_probs=74.4
Q ss_pred EeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCce
Q psy12482 280 IKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEF 359 (419)
Q Consensus 280 v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~ 359 (419)
|++|+||+. -.+.+||||+|.+.. .+++|++++++.||+|||.|.|+ +.........|.|+|||++..+++++
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~ 74 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRG-----VKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRL 74 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECC-----EeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCce
Confidence 788999998 333899999999832 35899999999999999999996 54322445779999999999999999
Q ss_pred eEEEEEeCCCCCcCCceeec
Q psy12482 360 LGGIRLNLGHGKHYSKLVDW 379 (419)
Q Consensus 360 lG~~~i~l~~~~~~~~~~~w 379 (419)
||++.++++++..++....|
T Consensus 75 iG~~~~~l~~l~~~~~~~~~ 94 (127)
T cd08373 75 IGSATVSLQDLVSEGLLEVT 94 (127)
T ss_pred EEEEEEEhhHcccCCceEEE
Confidence 99999999986544333333
No 188
>PLN03008 Phospholipase D delta
Probab=99.60 E-value=5.5e-15 Score=148.13 Aligned_cols=109 Identities=24% Similarity=0.382 Sum_probs=91.1
Q ss_pred CCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCccccc
Q psy12482 142 QRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF 221 (419)
Q Consensus 142 ~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~ 221 (419)
+.+||||+|.+.. .++.||++++++.||+|||+|.|.+... ...|.|.|||++.++ +++||++.|+++++..
T Consensus 75 ~tSDPYV~I~Lg~----~rv~RTrVi~n~~NPvWNE~F~f~vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~ 146 (868)
T PLN03008 75 ITSDPYVTVVVPQ----ATLARTRVLKNSQEPLWDEKFNISIAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIAS 146 (868)
T ss_pred CCCCceEEEEECC----cceeeEEeCCCCCCCCcceeEEEEecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcCC
Confidence 4679999999942 2256999999999999999999998762 348999999999996 6899999999999988
Q ss_pred CCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCc
Q psy12482 222 DDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSS 261 (419)
Q Consensus 222 ~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~ 261 (419)
+.....|++|...... ..+..|+|+|++.|.|.....
T Consensus 147 Ge~vd~Wl~Ll~~~~k---p~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 147 GERISGWFPVLGASGK---PPKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCceEEEEEccccCCC---CCCCCcEEEEEEEEEEccccc
Confidence 8889999999776542 234558999999999887644
No 189
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.59 E-value=1.2e-14 Score=117.58 Aligned_cols=87 Identities=18% Similarity=0.344 Sum_probs=74.8
Q ss_pred cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482 273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH 351 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 351 (419)
...|+|+|++|++|+..+.. .+||||++.+.. .+++|++++++.||+|||.|.|. +. . ....|.|+|||+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~v~~~t~nP~Wne~f~f~-~~--~-~~~~l~i~V~d~ 72 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-----ESVRSPVQKDTLSPEFDTQAIFY-RK--K-PRSPIKIQVWNS 72 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-----EEEEeCccCCCCCCcccceEEEE-ec--C-CCCEEEEEEEEC
Confidence 47899999999999998877 899999999742 35899999999999999999995 32 2 245699999999
Q ss_pred CCCCCCceeEEEEEeCCC
Q psy12482 352 DRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 352 ~~~~~~~~lG~~~i~l~~ 369 (419)
+..+ +++||.+.++++.
T Consensus 73 ~~~~-d~~lG~~~~~l~~ 89 (126)
T cd04046 73 NLLC-DEFLGQATLSADP 89 (126)
T ss_pred CCCC-CCceEEEEEeccc
Confidence 9875 8999999999976
No 190
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.59 E-value=6.1e-15 Score=116.45 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=75.0
Q ss_pred EEEEeccccccccCCC-CCCcEEEEEEeCCC-CCcceeecccccCCCCCccccEEEEcccCccccc----cCeEEEEEEE
Q psy12482 277 HVLIKEAKSLCPVKSN-TVDAFCKAYLLPDK-GRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS----ERCLELTVWD 350 (419)
Q Consensus 277 ~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~-~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~----~~~l~i~V~d 350 (419)
.+..++|++|+.++.. .+||||+|.+.++. .....++|+++++++||+|| .|.|+ ...++ ...|.|+|||
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~---~~~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP---LQKLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE---HHHhcCCCcCCEEEEEEEE
Confidence 4566799999999987 89999999987543 33457899999999999999 67764 33443 4679999999
Q ss_pred CCCCCCCceeEEEEEeCCCCC
Q psy12482 351 HDRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 351 ~~~~~~~~~lG~~~i~l~~~~ 371 (419)
++..+++++||++.++++++.
T Consensus 79 ~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 79 YDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred eCCCCCCcEEEEEEEEHHHHh
Confidence 999999999999999998753
No 191
>KOG1011|consensus
Probab=99.58 E-value=9e-14 Score=132.82 Aligned_cols=121 Identities=23% Similarity=0.413 Sum_probs=99.3
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
+..++++|+.|.+|.+.|.. |.+||||.+.++ ..+++|+++...+||+|||.|.|..... ...|.+.|||.
T Consensus 294 sakitltvlcaqgl~akdkt-g~sdpyvt~qv~-----ktkrrtrti~~~lnpvw~ekfhfechns---tdrikvrvwde 364 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKT-GKSDPYVTAQVG-----KTKRRTRTIHQELNPVWNEKFHFECHNS---TDRIKVRVWDE 364 (1283)
T ss_pred ceeeEEeeeecccceecccC-CCCCCcEEEeec-----ccchhhHhhhhccchhhhhheeeeecCC---CceeEEEEecC
Confidence 45789999999999999998 999999999997 5578999999999999999999997653 44899999998
Q ss_pred CCC-----------CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482 201 DMF-----------GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVP 256 (419)
Q Consensus 201 ~~~-----------~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~ 256 (419)
|.- ..|+|||+..|.+..+ +++.+-||.|..+.+. +...|.|++.+...-
T Consensus 365 d~dlksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdk----savsgairlhisvei 425 (1283)
T KOG1011|consen 365 DNDLKSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDK----SAVSGAIRLHISVEI 425 (1283)
T ss_pred cccHHHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccch----hhccceEEEEEEEEE
Confidence 632 2689999999988764 5677889999887665 445688777765543
No 192
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.57 E-value=1.7e-14 Score=113.83 Aligned_cols=92 Identities=25% Similarity=0.348 Sum_probs=75.8
Q ss_pred EEEEEeecCCCCCCCCCCCCCcEEEEEEeCCC-CCCCeeecccccCCCCceeccEEEEEcccCccc----ccEEEEEEEe
Q psy12482 125 EIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK-SKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLE----CRTLWLSVWH 199 (419)
Q Consensus 125 ~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~----~~~l~i~v~d 199 (419)
.+..++|++|+..+.. +.+||||+|++.+.. .....++|++++++.||+|| .|.|.+ .++. ...|.|+|||
T Consensus 3 ~~~~i~a~~L~~~d~~-~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~--~~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 3 VELQFSGKKLDKKDFF-GKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPL--QKLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EEEEEEeCCCCCCCCC-CCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEH--HHhcCCCcCCEEEEEEEE
Confidence 4556789999999987 899999999997543 33346899999999999999 566654 2221 4599999999
Q ss_pred cCCCCCCceeEEEEEeCcccc
Q psy12482 200 SDMFGRNDFLGEVMMSLENKV 220 (419)
Q Consensus 200 ~~~~~~~~~iG~~~~~l~~~~ 220 (419)
++..+++++||++.++++++.
T Consensus 79 ~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 79 YDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred eCCCCCCcEEEEEEEEHHHHh
Confidence 999999999999999999976
No 193
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.56 E-value=2.2e-14 Score=116.66 Aligned_cols=95 Identities=26% Similarity=0.405 Sum_probs=78.6
Q ss_pred ceEEEEEeccccccccC--CC-CCCcEEEEEEeCCCC-CcceeecccccCCC-CCccccEEEEcccCccccccCeEEEEE
Q psy12482 274 GSLHVLIKEAKSLCPVK--SN-TVDAFCKAYLLPDKG-RASKHKTGIIKRST-SPQWNHTVVYRDVSLEELSERCLELTV 348 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~--~~-~~dpyV~v~~~~~~~-~~~~~~T~~~~~t~-nP~wne~f~f~~v~~~~~~~~~l~i~V 348 (419)
..|+|+|++|+||+.++ .. ..||||++.+.+... ...+++|+++.++. ||+|||+|.|. +...+ ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEE
Confidence 47999999999999988 34 889999999976554 56778999988775 99999999996 54322 24699999
Q ss_pred EECCCCCCCceeEEEEEeCCCCCc
Q psy12482 349 WDHDRLTSNEFLGGIRLNLGHGKH 372 (419)
Q Consensus 349 ~d~~~~~~~~~lG~~~i~l~~~~~ 372 (419)
||++.. ++++||.+.++++.+..
T Consensus 79 ~d~~~~-~~~~iG~~~~~l~~l~~ 101 (128)
T cd00275 79 YDEDSG-DDDFLGQACLPLDSLRQ 101 (128)
T ss_pred EeCCCC-CCcEeEEEEEEhHHhcC
Confidence 999988 89999999999987543
No 194
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.56 E-value=2.3e-14 Score=114.49 Aligned_cols=85 Identities=21% Similarity=0.304 Sum_probs=70.6
Q ss_pred EEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCC
Q psy12482 276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLT 355 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~ 355 (419)
|.|+|++|+||+.. +.+||||+|.+. +...++|+++++ .||+|||+|.|. ++..++....|.|.+||++..+
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~----~~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLD----QVEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEEC----CEEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCC
Confidence 78999999999987 678999999993 344578999998 999999999996 7766655567899999988777
Q ss_pred CCceeEEEEEeCC
Q psy12482 356 SNEFLGGIRLNLG 368 (419)
Q Consensus 356 ~~~~lG~~~i~l~ 368 (419)
++..+|.+.|+..
T Consensus 74 ~~~~~g~v~l~~~ 86 (117)
T cd08383 74 RDIVIGKVALSKL 86 (117)
T ss_pred CeeEEEEEEecCc
Confidence 7788888777653
No 195
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=4.7e-14 Score=112.98 Aligned_cols=98 Identities=30% Similarity=0.341 Sum_probs=82.9
Q ss_pred EEEEEEEeecCCCCCC--CCCC--CCCcEEEEEEeCCCCCCCeeecccccCCCC--ceeccEEEEEccc-----------
Q psy12482 123 ALEIHVKQCKDLAPVD--TKRQ--RSDPYVKVYLLPDKSKAGKRKTRVKKHTLS--PVFDEVLKFQLTL----------- 185 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~--~~~~--~~dpyv~v~l~~~~~~~~~~kT~~~~~t~n--P~wne~f~f~v~~----------- 185 (419)
.|+|.|.+|++++..+ .. | .+||||++.+.+.. ..+++|.++.+++| |.||+.|.|.+..
T Consensus 1 eLRViIw~~~~v~~~~~~~~-g~~~sD~yVK~~L~~~~--~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~ 77 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNIT-GEKMSDIYVKGWLDGLE--EDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIK 77 (133)
T ss_pred CEEEEEEECcCCcccccccC-CccccCeEEEEEEccCc--ccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEe
Confidence 3899999999966543 23 5 49999999998763 44789999999999 9999999999766
Q ss_pred ----------CcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCC
Q psy12482 186 ----------EDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD 223 (419)
Q Consensus 186 ----------~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~ 223 (419)
+.+....|.++|||.|.++++++||+++++|..+....
T Consensus 78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 56677899999999999999999999999999865443
No 196
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.53 E-value=5.3e-14 Score=105.38 Aligned_cols=85 Identities=38% Similarity=0.711 Sum_probs=74.9
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|+|+|++|++|+..+.. +.++|||++.+..... ..++|++++++.+|.|||.|.|.+...... .|.|+|||.+..
T Consensus 1 L~v~I~~a~~L~~~~~~-~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSN-GKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTT-SSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccC-Ccccccceeecceeee--eeeeeeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCC
Confidence 78999999999998766 7899999999986553 468999999999999999999997776655 599999999999
Q ss_pred CCCceeEEEE
Q psy12482 204 GRNDFLGEVM 213 (419)
Q Consensus 204 ~~~~~iG~~~ 213 (419)
+++++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 8899999974
No 197
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.53 E-value=1.1e-13 Score=111.67 Aligned_cols=87 Identities=25% Similarity=0.474 Sum_probs=72.4
Q ss_pred ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
..|.|+|.+|+ |...+.. .+||||+|.+. ...+++|++++++.||+|||.|.|. +.. ...|.|+|||++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~----~~~~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~ 71 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD----GQPPKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHH 71 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC----CcccEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCC
Confidence 36899999998 5444445 89999999983 2246899999999999999999996 543 256999999999
Q ss_pred CCCCCceeEEEEEeCCCC
Q psy12482 353 RLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 353 ~~~~~~~lG~~~i~l~~~ 370 (419)
..+++++||++.++|+++
T Consensus 72 ~~~~~~~iG~~~i~l~~l 89 (125)
T cd04021 72 TLKADVLLGEASLDLSDI 89 (125)
T ss_pred CCCCCcEEEEEEEEHHHh
Confidence 999999999999999763
No 198
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.52 E-value=8.3e-15 Score=119.60 Aligned_cols=86 Identities=16% Similarity=0.372 Sum_probs=69.8
Q ss_pred cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
...|.|.|++|++|+.++ +|||.|.+ ++....||+++.++.||.|||.|.|.+.+. . ..|.|.|++.+
T Consensus 10 ~~sL~v~V~EAk~Lp~~~----~~Y~~i~L----d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~--~~l~v~v~k~~ 77 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK----RYYCELCL----DKTLYARTTSKLKTDTLFWGEHFEFSNLPP--V--SVITVNLYRES 77 (146)
T ss_pred EEEEEEEEEEccCCCCcC----CceEEEEE----CCEEEEEEEEEcCCCCCcceeeEEecCCCc--c--cEEEEEEEEcc
Confidence 467999999999998854 89999999 566678999999999999999999963332 2 45999997643
Q ss_pred -CCC---CCceeEEEEEeCCCC
Q psy12482 353 -RLT---SNEFLGGIRLNLGHG 370 (419)
Q Consensus 353 -~~~---~~~~lG~~~i~l~~~ 370 (419)
..+ ++.+||.+.|++.++
T Consensus 78 ~~~~~~~~~~~IG~V~Ip~~~l 99 (146)
T cd04013 78 DKKKKKDKSQLIGTVNIPVTDV 99 (146)
T ss_pred CccccccCCcEEEEEEEEHHHh
Confidence 332 578999999999774
No 199
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.52 E-value=5.2e-14 Score=105.41 Aligned_cols=84 Identities=27% Similarity=0.535 Sum_probs=73.3
Q ss_pred EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL 354 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~ 354 (419)
|.|+|++|+||+..+.. ..||||++.+..... ..++|++++++.+|.|||.|.|. +...+. ..|.|+|||++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~--~~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFP-LDDPDL--DSLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEE-ESHGCG--TEEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeee-eecccc--cceEEEEEECCCC
Confidence 78999999999998877 999999999976543 66999999999999999999996 665555 4499999999999
Q ss_pred CCCceeEEEE
Q psy12482 355 TSNEFLGGIR 364 (419)
Q Consensus 355 ~~~~~lG~~~ 364 (419)
+++++||+|.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999999984
No 200
>KOG0905|consensus
Probab=99.49 E-value=4.5e-14 Score=142.75 Aligned_cols=126 Identities=38% Similarity=0.539 Sum_probs=115.4
Q ss_pred eeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-c
Q psy12482 105 VIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-L 183 (419)
Q Consensus 105 ~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v 183 (419)
.++-|+|.++++|. .+.|.|.|..|++|+-...+ ..+||||+.++.|+.++..++||+++++|.||.|||...|. +
T Consensus 1509 ~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg-~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~ 1585 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDG-QDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGF 1585 (1639)
T ss_pred cccCceEEEEEEEc--CceEEEEhhhhcccccccCC-CCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCC
Confidence 34568999999998 89999999999999776654 78999999999999998889999999999999999999999 8
Q ss_pred ccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE 233 (419)
Q Consensus 184 ~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 233 (419)
+.+.++.+.|+++||..+.+..+.++|.+.++|.++...++...||.|..
T Consensus 1586 p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1586 PKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred chhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 88888889999999999998899999999999999999999899999864
No 201
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.47 E-value=1.7e-13 Score=149.90 Aligned_cols=120 Identities=23% Similarity=0.408 Sum_probs=98.8
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
-|.|+|+|++|+||. . .. +.+||||++.++. ..++||++++++.||+|||.|.|.+.... ....|.|+|||+
T Consensus 1979 ~G~L~V~V~~a~nl~-~-~~-~~sdPyv~l~~g~----~~~~kTkvvk~~~nP~Wne~f~~~~~~p~-~~~~l~iev~d~ 2050 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK-Q-SM-GNTNAFCKLTLGN----GPPRQTKVVSHSSSPEWKEGFTWAFDSPP-KGQKLHISCKSK 2050 (2102)
T ss_pred CcceEEEEeeccccc-c-cc-CCCCCeEEEEECC----CCcccccccCCCCCCCcccceeeeecCCC-CCCceEEEEEec
Confidence 589999999999998 3 33 7899999999973 22579999999999999999997764432 234799999999
Q ss_pred CCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccc---eEEEEEEeC
Q psy12482 201 DMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGE---LIIGLKFVP 256 (419)
Q Consensus 201 ~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~---l~l~l~~~~ 256 (419)
|.+++ +.+|.+.+++.++...+....||+|.+.+. ..|. |.+.+.|.+
T Consensus 2051 d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~-------k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNPESN-------KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCC-CCCceEEEEHHHHhcCceeeeeeecCcccc-------cCCCcceEEEEEEecC
Confidence 99965 489999999999988889999999986432 2377 999988864
No 202
>KOG1326|consensus
Probab=99.44 E-value=4.1e-14 Score=141.46 Aligned_cols=90 Identities=23% Similarity=0.301 Sum_probs=74.4
Q ss_pred ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
--++|.|.+|-+|.+.|.+ .+||||++.++. ....-+...+.+|+||+|++.|.+. ..-..+..+.++|||+|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk---~~~~d~~~yip~tlnPVfgkmfel~---~~lp~ek~l~v~vyd~D 686 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK---KRTLDRAHYIPNTLNPVFGKMFELE---CLLPFEKDLIVEVYDHD 686 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeecc---chhhhhhhcCcCCCCcHHHHHHHhh---cccchhhcceeEEEEee
Confidence 3577999999999999999 999999999842 2234577888999999999998875 22223355999999999
Q ss_pred CCCCCceeEEEEEeCCC
Q psy12482 353 RLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 353 ~~~~~~~lG~~~i~l~~ 369 (419)
..+.|+.+|+..|+|.+
T Consensus 687 ~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 687 LEAQDEKIGETTIDLEN 703 (1105)
T ss_pred cccccchhhceehhhhh
Confidence 99999999999999875
No 203
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.44 E-value=1.5e-13 Score=108.41 Aligned_cols=70 Identities=19% Similarity=0.382 Sum_probs=59.2
Q ss_pred CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 293 ~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
.+||||+|.+ +....++|++++++.||+|||.|.|. +. +.....|.|.|+|++.+ ++++||.+.++|+++
T Consensus 12 ~~dPYv~v~v----~~~~~~kT~v~~~t~nP~Wne~f~f~-v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l 81 (111)
T cd04052 12 LLSPYAELYL----NGKLVYTTRVKKKTNNPSWNASTEFL-VT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDL 81 (111)
T ss_pred CCCceEEEEE----CCEEEEEEeeeccCCCCccCCceEEE-ec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence 7899999999 33345799999999999999999996 43 33456699999999998 899999999999774
No 204
>PLN03008 Phospholipase D delta
Probab=99.44 E-value=6.1e-14 Score=140.76 Aligned_cols=69 Identities=20% Similarity=0.365 Sum_probs=58.2
Q ss_pred CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 293 ~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
++||||+|.+. ...+.||++++++.||+|||.|.|. +. +. ...|.|+|+|+|.++ +++||++.|++.++
T Consensus 76 tSDPYV~I~Lg----~~rv~RTrVi~n~~NPvWNE~F~f~-va--h~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L 144 (868)
T PLN03008 76 TSDPYVTVVVP----QATLARTRVLKNSQEPLWDEKFNIS-IA--HP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDI 144 (868)
T ss_pred CCCceEEEEEC----CcceeeEEeCCCCCCCCcceeEEEE-ec--CC-CceEEEEEEcCCccC-CceeEEEEEEHHHc
Confidence 67999999993 3446799999999999999999996 43 22 246999999999997 58999999999874
No 205
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.39 E-value=5.4e-13 Score=146.07 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=84.0
Q ss_pred CcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482 272 AKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH 351 (419)
Q Consensus 272 ~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 351 (419)
-.|.|.|+|++|.||. .+.+.+||||++.+ +.+.++||++++++.||+|||.|.|. +... ..+..|.|+|||+
T Consensus 1978 ~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~----g~~~~~kTkvvk~~~nP~Wne~f~~~-~~~p-~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-QSMGNTNAFCKLTL----GNGPPRQTKVVSHSSSPEWKEGFTWA-FDSP-PKGQKLHISCKSK 2050 (2102)
T ss_pred CCcceEEEEeeccccc-cccCCCCCeEEEEE----CCCCcccccccCCCCCCCcccceeee-ecCC-CCCCceEEEEEec
Confidence 3799999999999997 33348999999999 44556899999999999999999974 3221 1234499999999
Q ss_pred CCCCCCceeEEEEEeCCCCCcCCceeecccCC
Q psy12482 352 DRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSS 383 (419)
Q Consensus 352 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~ 383 (419)
|.+++| .||++.|++.++..++....||...
T Consensus 2051 d~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~ 2081 (2102)
T PLN03200 2051 NTFGKS-SLGKVTIQIDRVVMEGTYSGEYSLN 2081 (2102)
T ss_pred CccCCC-CCceEEEEHHHHhcCceeeeeeecC
Confidence 999654 8999999999987777777776654
No 206
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.36 E-value=9.6e-12 Score=95.95 Aligned_cols=95 Identities=37% Similarity=0.661 Sum_probs=79.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|.|.|++|++|...... +..+|||++++.+.+ ....+|+++.++.||.|||.|.|.+.... ...|.|+||+.+..
T Consensus 2 l~i~i~~~~~l~~~~~~-~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKK-GKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRF 76 (101)
T ss_pred eEEEEEEeeCCCCCCCC-CCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCc
Confidence 68999999999987754 578999999998543 34689999999999999999999976644 56999999999887
Q ss_pred CCCceeEEEEEeCcccccCC
Q psy12482 204 GRNDFLGEVMMSLENKVFDD 223 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~~~~ 223 (419)
+.+.++|.+.+++.++....
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred cCCceeEEEEEEHHHcccCc
Confidence 78999999999998865443
No 207
>KOG0905|consensus
Probab=99.34 E-value=1.2e-12 Score=132.71 Aligned_cols=123 Identities=28% Similarity=0.563 Sum_probs=112.2
Q ss_pred cccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482 244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTS 322 (419)
Q Consensus 244 ~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n 322 (419)
..|+|.+++.|. .+.|.|.|.-|++|+....+ ..||||+.++.++..+..++||+++++|.|
T Consensus 1511 iggqV~LsIsY~-----------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~ 1573 (1639)
T KOG0905|consen 1511 IGGQVKLSISYN-----------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRN 1573 (1639)
T ss_pred cCceEEEEEEEc-----------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCC
Confidence 347999999997 69999999999999877777 999999999999988999999999999999
Q ss_pred CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCC
Q psy12482 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSS 383 (419)
Q Consensus 323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~ 383 (419)
|.|||.+.+..+|.+.+++..|.++||..+.+..+.+||.+.|+|.++...+..+.||...
T Consensus 1574 PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1574 PTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred CchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 9999999997789999998889999999999999999999999999987777777887753
No 208
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.34 E-value=8.9e-12 Score=96.14 Aligned_cols=94 Identities=30% Similarity=0.449 Sum_probs=77.7
Q ss_pred eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
.|.|.|++|++|...... ..+|||++.+...+ ....+|+++.++.||.|||.|.|+ +.... ...|.|+|||++.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~ 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDR 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCC
Confidence 378999999999887775 78999999996543 456899999998999999999996 54322 5679999999998
Q ss_pred CCCCceeEEEEEeCCCCCcC
Q psy12482 354 LTSNEFLGGIRLNLGHGKHY 373 (419)
Q Consensus 354 ~~~~~~lG~~~i~l~~~~~~ 373 (419)
.+.+.+||.+.+++.++...
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred ccCCceeEEEEEEHHHcccC
Confidence 88899999999998875433
No 209
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.33 E-value=1.5e-11 Score=94.62 Aligned_cols=101 Identities=39% Similarity=0.602 Sum_probs=84.2
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF 203 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~ 203 (419)
|.|.|++|++|...... ...+|||.+.+.. ....+|.+..++.||.||+.|.|.+... ....|.|+||+.+..
T Consensus 1 l~v~i~~~~~l~~~~~~-~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~ 73 (102)
T cd00030 1 LRVTVIEARNLPAKDLN-GKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRF 73 (102)
T ss_pred CEEEEEeeeCCCCcCCC-CCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCC
Confidence 47899999999886654 7899999999974 2468999999999999999999997653 345899999999988
Q ss_pred CCCceeEEEEEeCcccc-cCCCCCceecC
Q psy12482 204 GRNDFLGEVMMSLENKV-FDDPSPKCYPL 231 (419)
Q Consensus 204 ~~~~~iG~~~~~l~~~~-~~~~~~~w~~L 231 (419)
+.+.+||.+.+++.++. .......|++|
T Consensus 74 ~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 74 SKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 77899999999999987 55566778764
No 210
>KOG1328|consensus
Probab=99.32 E-value=1e-12 Score=127.29 Aligned_cols=112 Identities=32% Similarity=0.499 Sum_probs=100.7
Q ss_pred eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCC--CCeeecccccCCCCceeccEEEEEccc
Q psy12482 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK--AGKRKTRVKKHTLSPVFDEVLKFQLTL 185 (419)
Q Consensus 108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~ 185 (419)
.|.+.+...|..+.+.|.|.|+.|+++.+.|.+ |.+||||.|.+.|.... ...++|+++++|+||+|+|+|+|.|+.
T Consensus 933 fg~lsvr~~y~~n~q~L~veVlhA~diipLD~N-GlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~ 1011 (1103)
T KOG1328|consen 933 FGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSN-GLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPP 1011 (1103)
T ss_pred CCceEEEEEeeccccchhhhhhccccccccCCC-CCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCc
Confidence 688999999999999999999999999999998 99999999999865432 335799999999999999999999988
Q ss_pred Cccc--ccEEEEEEEecCCCCCCceeEEEEEeCcccc
Q psy12482 186 EDLE--CRTLWLSVWHSDMFGRNDFLGEVMMSLENKV 220 (419)
Q Consensus 186 ~~l~--~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~ 220 (419)
+.-. .+.|.|+|+|+|.+..++|-|++.+.|+++.
T Consensus 1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 7654 5689999999999999999999999999864
No 211
>PLN02223 phosphoinositide phospholipase C
Probab=99.30 E-value=1.1e-11 Score=119.93 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=90.9
Q ss_pred cceEEEEEecccccccc-----CCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEE
Q psy12482 273 KGSLHVLIKEAKSLCPV-----KSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLEL 346 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~-----~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i 346 (419)
...|.|+|+.|++++.. +.. ..||||+|.+.+-.....+++|.+..++.||+|||.|.|+ +...++ ..|.|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~-i~~PEL--AlLrf 484 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFP-LTYPDL--ALISF 484 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEE-EEccCc--eEEEE
Confidence 46799999999998521 222 6799999999765444456778777788999999999997 665565 77999
Q ss_pred EEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchh
Q psy12482 347 TVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKE 386 (419)
Q Consensus 347 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~ 386 (419)
+|+|+|..+.++++|+..|++..++.+.+..+.++..|..
T Consensus 485 ~V~D~D~~~~ddfiGQ~~LPv~~Lr~GyR~VpL~~~~g~~ 524 (537)
T PLN02223 485 EVYDYEVSTADAFCGQTCLPVSELIEGIRAVPLYDERGKA 524 (537)
T ss_pred EEEecCCCCCCcEEEEEecchHHhcCCceeEeccCCCcCC
Confidence 9999999889999999999999999998888888877753
No 212
>KOG1327|consensus
Probab=99.28 E-value=1.9e-11 Score=117.06 Aligned_cols=199 Identities=20% Similarity=0.281 Sum_probs=141.4
Q ss_pred cceeeecccCCCCcccceeeeceeeceeeccccccccCCCCcCcc----cccccCccCCcccccccccccccCCcccccc
Q psy12482 9 KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAH----SEAGLNKSVSSILTDDDVTERLPHHNKSLLG 84 (419)
Q Consensus 9 k~kT~v~~~t~nP~wnE~f~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~ 84 (419)
..+|+++.+.+||.|-+.|.. .+.++..|...+.+++.+.. ...++.|+....+...-......
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l----~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-------- 109 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLL----QYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-------- 109 (529)
T ss_pred ccceeeeeccCCccceeeech----hheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh--------
Confidence 458999999999999999988 57888888888888888754 33344444222111111000000
Q ss_pred cccCCccccccCCCCCCCCceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEe-CCCCCCCeee
Q psy12482 85 ARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLL-PDKSKAGKRK 163 (419)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~-~~~~~~~~~k 163 (419)
....... +.....|.|.+.+.-............+|++|...+.. +.+|||..++-. .++.....++
T Consensus 110 -----~~l~~~~------~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f-~ksd~~l~~~~~~~d~s~~~~~~ 177 (529)
T KOG1327|consen 110 -----GPLLLKP------GKNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFF-SKSDPYLEFYKRVDDGSTQMLYR 177 (529)
T ss_pred -----hhhhccc------CccCCcccEEEEeecccccCceeeeeeeeeecCccccc-ccCCcceEEEEecCCCceeeccc
Confidence 0000000 01123699999998888777777778889999999998 999999999876 4666666889
Q ss_pred cccccCCCCceeccEEEEEcccCccc----ccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482 164 TRVKKHTLSPVFDEVLKFQLTLEDLE----CRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234 (419)
Q Consensus 164 T~~~~~t~nP~wne~f~f~v~~~~l~----~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 234 (419)
|.+++++++|.|.+ |.++...+. +..+.+.+||++..+++++||++..++.++........|....+.
T Consensus 178 tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~~~~~~~~~~~~~~ 249 (529)
T KOG1327|consen 178 TEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQEPGSPNQIMLINPK 249 (529)
T ss_pred cceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcccCCcccccccChh
Confidence 99999999999998 776666553 468999999999999999999999999887543333445444443
No 213
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.25 E-value=4.2e-11 Score=92.15 Aligned_cols=89 Identities=31% Similarity=0.520 Sum_probs=74.5
Q ss_pred EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL 354 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~ 354 (419)
|.|.|++|++|...... ..+|||.+.+.+ ....+|.++.++.||.|||.|.|+ +... ....|.|+||+++..
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~ 73 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRF 73 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCC
Confidence 46899999999876555 899999999854 456899999999999999999996 5432 345699999999988
Q ss_pred CCCceeEEEEEeCCCCC
Q psy12482 355 TSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 355 ~~~~~lG~~~i~l~~~~ 371 (419)
+.+.+||.+.+++..+.
T Consensus 74 ~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 74 SKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCceeEEEEEeHHHhh
Confidence 88999999999997743
No 214
>PLN02223 phosphoinositide phospholipase C
Probab=99.23 E-value=1.2e-10 Score=112.67 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=83.4
Q ss_pred CEEEEEEEeecCCCCC-----CCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEE
Q psy12482 122 GALEIHVKQCKDLAPV-----DTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLS 196 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~-----~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~ 196 (419)
..|.|.|+.|.+++.. +.. ..+||||+|.+..-..-..+++|.+..++.||+|||+|.|.+...++. .|+|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~-s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELA--lLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRL-SKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLA--LISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCC-CCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCce--EEEEE
Confidence 5799999999987521 122 467999999997322223356788888999999999999998877766 89999
Q ss_pred EEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482 197 VWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS 235 (419)
Q Consensus 197 v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~ 235 (419)
|+|+|..+++++||++.+|+..+..+- .+.+|....
T Consensus 486 V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~ 521 (537)
T PLN02223 486 VYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDER 521 (537)
T ss_pred EEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence 999998888999999999999875432 456665543
No 215
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.21 E-value=5.2e-11 Score=117.53 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=92.2
Q ss_pred cceEEEEEecccccccc------CCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEE
Q psy12482 273 KGSLHVLIKEAKSLCPV------KSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLE 345 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~------~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~ 345 (419)
...|.|+|+.|.+++.. +.. ..||||+|.+.+-.....+++|++..++.||+|||.|.|+ +...++ ..|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~-l~vPEL--AllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFP-LAVPEL--ALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEE-EEcCce--eEEE
Confidence 46799999999987532 222 4799999999864433455788888889999999999997 666666 7799
Q ss_pred EEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchh
Q psy12482 346 LTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKE 386 (419)
Q Consensus 346 i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~ 386 (419)
|.|+|+|..++++++|+..|++..++.+.+..+.++..|..
T Consensus 545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V~L~~~~G~~ 585 (598)
T PLN02230 545 VEVHEHDINEKDDFGGQTCLPVSEIRQGIHAVPLFNRKGVK 585 (598)
T ss_pred EEEEECCCCCCCCEEEEEEcchHHhhCccceEeccCCCcCC
Confidence 99999999889999999999999999999999888888753
No 216
>PLN02952 phosphoinositide phospholipase C
Probab=99.19 E-value=9.3e-11 Score=115.95 Aligned_cols=110 Identities=24% Similarity=0.299 Sum_probs=88.3
Q ss_pred cceEEEEEeccccccccC------CC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEE
Q psy12482 273 KGSLHVLIKEAKSLCPVK------SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLE 345 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~------~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~ 345 (419)
...|.|.|+.|.+|+... .. ..||||+|.+.+-.....+++|+++.++.||+|||.|.|+ +...++ ..|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PEL--Allr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPEL--ALLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCc--cEEE
Confidence 468999999999875321 11 3599999999764444567799999999999999999997 665555 6799
Q ss_pred EEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCch
Q psy12482 346 LTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGK 385 (419)
Q Consensus 346 i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~ 385 (419)
|.|+|+|..+.++++|++.|+++.++.+.+..+.++..|.
T Consensus 546 f~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR~VpL~~~~G~ 585 (599)
T PLN02952 546 IEVREYDMSEKDDFGGQTCLPVSELRPGIRSVPLHDKKGE 585 (599)
T ss_pred EEEEecCCCCCCCeEEEEEcchhHhcCCceeEeCcCCCCC
Confidence 9999999988999999999999998887776666665553
No 217
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.19 E-value=7.9e-11 Score=116.07 Aligned_cols=111 Identities=18% Similarity=0.223 Sum_probs=91.8
Q ss_pred cceEEEEEeccccccc--c----CCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEE
Q psy12482 273 KGSLHVLIKEAKSLCP--V----KSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLE 345 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~--~----~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~ 345 (419)
...|.|+|+.|.+++. . +.. ..||||+|.+.+-.....+++|+++.++.||+|||.|.|+ +...++ ..|+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~-i~~PeL--AllR 527 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFP-LTVPEL--ALLR 527 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEE-EEcCce--eEEE
Confidence 4679999999988531 1 122 5799999999754444556789999999999999999997 666666 7799
Q ss_pred EEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchh
Q psy12482 346 LTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKE 386 (419)
Q Consensus 346 i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~ 386 (419)
|.|+|+|..+.++++|+..|++..++.+.+..+.++..|..
T Consensus 528 f~V~d~D~~~~ddfigq~~lPv~~Lr~GyR~V~L~~~~g~~ 568 (581)
T PLN02222 528 LEVHEYDMSEKDDFGGQTCLPVWELSQGIRAFPLHSRKGEK 568 (581)
T ss_pred EEEEECCCCCCCcEEEEEEcchhhhhCccceEEccCCCcCC
Confidence 99999998888999999999999999999999998888854
No 218
>PLN02952 phosphoinositide phospholipase C
Probab=99.17 E-value=3.9e-10 Score=111.60 Aligned_cols=110 Identities=22% Similarity=0.356 Sum_probs=85.4
Q ss_pred CCEEEEEEEeecCCCCCCC--C---CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEE
Q psy12482 121 QGALEIHVKQCKDLAPVDT--K---RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL 195 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~--~---~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i 195 (419)
...|.|.|+.|.+++.... . ...+||||+|.+..-..-..+++|+++.++.||+|||+|.|.+...++. .|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELA--llrf 546 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELA--LLRI 546 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCcc--EEEE
Confidence 4689999999998753211 1 0235999999997322223467899999999999999999998776655 8999
Q ss_pred EEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482 196 SVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS 235 (419)
Q Consensus 196 ~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~ 235 (419)
.|+|+|..+.++++|++.+++..+..+- .|++|....
T Consensus 547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~ 583 (599)
T PLN02952 547 EVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKK 583 (599)
T ss_pred EEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCC
Confidence 9999998888999999999999875443 488886544
No 219
>KOG1327|consensus
Probab=99.16 E-value=6e-10 Score=106.98 Aligned_cols=186 Identities=21% Similarity=0.307 Sum_probs=138.8
Q ss_pred CeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC----CCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482 160 GKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF----GRNDFLGEVMMSLENKVFDDPSPKCYPLQERS 235 (419)
Q Consensus 160 ~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~----~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~ 235 (419)
...+|.++++.+||.|-+.|......+..+ .|++.+++.+.. ...+|+|++...+.++........-+.+.+.
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ--~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~- 117 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQ--LLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPG- 117 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeee--eEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccC-
Confidence 345899999999999999887776666655 899999987643 4678999999999887544433333333322
Q ss_pred chhhhhhccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEe-CCCCCcceee
Q psy12482 236 EILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLL-PDKGRASKHK 313 (419)
Q Consensus 236 ~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~-~~~~~~~~~~ 313 (419)
.....|.|.+.+.=... ......-..+|++|...|.. ++|||..+.-. +++.....++
T Consensus 118 -----~~~~~g~iti~aee~~~---------------~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~ 177 (529)
T KOG1327|consen 118 -----KNAGSGTITISAEEDES---------------DNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYR 177 (529)
T ss_pred -----ccCCcccEEEEeecccc---------------cCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccc
Confidence 12345888776654332 23444555669999999988 99999998865 4566778899
Q ss_pred cccccCCCCCccccEEEEcccCccccc----cCeEEEEEEECCCCCCCceeEEEEEeCCCCCc
Q psy12482 314 TGIIKRSTSPQWNHTVVYRDVSLEELS----ERCLELTVWDHDRLTSNEFLGGIRLNLGHGKH 372 (419)
Q Consensus 314 T~~~~~t~nP~wne~f~f~~v~~~~~~----~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~ 372 (419)
|.+.+++++|.|-+. .++...++ +.++.+.+||++.-++++++|.+.-++.....
T Consensus 178 tEv~~n~l~p~w~~~----~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 178 TEVVKNTLNPQWAPF----SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cceeccCCCCccccc----ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 999999999999874 25566665 36699999999999999999999988877543
No 220
>KOG1031|consensus
Probab=99.14 E-value=1.1e-10 Score=110.81 Aligned_cols=117 Identities=23% Similarity=0.363 Sum_probs=97.1
Q ss_pred cceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCCCccc-cEEEEcccCccccccCeEEEEEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWN-HTVVYRDVSLEELSERCLELTVW 349 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wn-e~f~f~~v~~~~~~~~~l~i~V~ 349 (419)
.|.|.|.|..||+||.||.. ..|.||.|++..-. ++|.+..+++||.|| +-|.|. +.-.++++..|.|+++
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t-----~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~ll 75 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT-----FKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLL 75 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccc-----eehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEe
Confidence 47899999999999999987 88999999996444 899999999999998 558996 8888999999999999
Q ss_pred ECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCC
Q psy12482 350 DHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSS 410 (419)
Q Consensus 350 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~ 410 (419)
|+|.++.++.||.|.|+++.+ ... .=.+-....+.-|.+|+|+-.+
T Consensus 76 d~dtysandaigkv~i~idpl----------~~e-----~aaqavhgkgtvisgw~pifdt 121 (1169)
T KOG1031|consen 76 DHDTYSANDAIGKVNIDIDPL----------CLE-----EAAQAVHGKGTVISGWFPIFDT 121 (1169)
T ss_pred cccccccccccceeeeccChH----------HHH-----hHHhhhcCCceEEeeeeeccee
Confidence 999999999999999999763 111 1123445566778888887655
No 221
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=99.13 E-value=8.1e-11 Score=84.13 Aligned_cols=102 Identities=23% Similarity=0.267 Sum_probs=81.1
Q ss_pred EEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCC
Q psy12482 125 EIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFG 204 (419)
Q Consensus 125 ~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~ 204 (419)
-++|++|++|.-....+..+.-|++--+.-.+ --..||+++++..||+|+|+|.|.+...++++..|.|+|+. ...
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~k--pv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPK--PVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCC--CccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCC
Confidence 47889999998776653455667776554222 22579999999999999999999999999999999999998 456
Q ss_pred CCceeEEEEEeCcccccCCCCCceecC
Q psy12482 205 RNDFLGEVMMSLENKVFDDPSPKCYPL 231 (419)
Q Consensus 205 ~~~~iG~~~~~l~~~~~~~~~~~w~~L 231 (419)
+.+.||.|.+++++ ...++..+|.++
T Consensus 78 RKe~iG~~sL~l~s-~geeE~~HW~e~ 103 (103)
T cd08684 78 RKRTIGECSLSLRT-LSTQETDHWLEI 103 (103)
T ss_pred ccceeeEEEeeccc-CCHHHhhhhhcC
Confidence 88999999999998 345566778653
No 222
>KOG1011|consensus
Probab=99.12 E-value=6.9e-11 Score=113.46 Aligned_cols=118 Identities=25% Similarity=0.423 Sum_probs=88.5
Q ss_pred CCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEE
Q psy12482 269 SSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELT 347 (419)
Q Consensus 269 ~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~ 347 (419)
.......+.++|.+|.+|.+.|.. ++||||.+.++ ..+++|+++-..+||+|||.|.|. . ......|++.
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~-----ktkrrtrti~~~lnpvw~ekfhfe---c-hnstdrikvr 360 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-----KTKRRTRTIHQELNPVWNEKFHFE---C-HNSTDRIKVR 360 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeec-----ccchhhHhhhhccchhhhhheeee---e-cCCCceeEEE
Confidence 344578999999999999999988 99999999873 445899999999999999999996 2 1223459999
Q ss_pred EEECCC-----------CCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCce-EEeeeecc
Q psy12482 348 VWDHDR-----------LTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFW-VESCIPLR 408 (419)
Q Consensus 348 V~d~~~-----------~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~-i~~w~~l~ 408 (419)
|||.|. -.+|+|||+..|.+.. ++| +++-|+.+..+-++. +.+=..|+
T Consensus 361 vwded~dlksklrqkl~resddflgqtvievrt------------lsg-emdvwynlekrtdksavsgairlh 420 (1283)
T KOG1011|consen 361 VWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRT------------LSG-EMDVWYNLEKRTDKSAVSGAIRLH 420 (1283)
T ss_pred EecCcccHHHHHHHHhhhcccccccceeEEEEe------------ccc-chhhhcchhhccchhhccceEEEE
Confidence 999764 2468999999998865 233 356677666654433 44444443
No 223
>PLN02228 Phosphoinositide phospholipase C
Probab=99.11 E-value=2.9e-10 Score=111.81 Aligned_cols=111 Identities=25% Similarity=0.253 Sum_probs=92.0
Q ss_pred cceEEEEEeccccccc---cC---CC-CCCcEEEEEEeCCCCCcceeecccccCCCCCcc-ccEEEEcccCccccccCeE
Q psy12482 273 KGSLHVLIKEAKSLCP---VK---SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW-NHTVVYRDVSLEELSERCL 344 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~---~~---~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~w-ne~f~f~~v~~~~~~~~~l 344 (419)
...|.|+|+.|++|+. .+ .. ..||||+|.+.+-.....+++|+++.++.||+| ||.|.|+ +...++ ..|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~-~~~pEL--A~l 506 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQ-LRVPEL--ALL 506 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEE-EEcCce--eEE
Confidence 4579999999998732 11 12 479999999976544456679999988899999 9999997 655566 679
Q ss_pred EEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchh
Q psy12482 345 ELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKE 386 (419)
Q Consensus 345 ~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~ 386 (419)
.|.|+|+|..+.++++|++.|+++.++.+.+..+.++..|..
T Consensus 507 Rf~V~D~d~~~~d~figq~~lPv~~Lr~GYR~VpL~~~~G~~ 548 (567)
T PLN02228 507 WFKVQDYDNDTQNDFAGQTCLPLPELKSGVRAVRLHDRAGKA 548 (567)
T ss_pred EEEEEeCCCCCCCCEEEEEEcchhHhhCCeeEEEccCCCCCC
Confidence 999999998888999999999999999999999998888864
No 224
>KOG0169|consensus
Probab=99.11 E-value=1.3e-10 Score=114.63 Aligned_cols=111 Identities=17% Similarity=0.303 Sum_probs=93.9
Q ss_pred eEEEEEecccccccc-CC---C-CCCcEEEEEEeCCCCCcceeecc-cccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482 275 SLHVLIKEAKSLCPV-KS---N-TVDAFCKAYLLPDKGRASKHKTG-IIKRSTSPQWNHTVVYRDVSLEELSERCLELTV 348 (419)
Q Consensus 275 ~l~v~v~~a~~L~~~-~~---~-~~dpyV~v~~~~~~~~~~~~~T~-~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 348 (419)
.|.|.|+.|.+++.. +. + .+||||.|.+.+-......++|+ +..++.||.|+|+|.|+ +..+++ +-|+|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~-l~vPEL--AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQ-LSVPEL--ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEE-Eeccce--eEEEEEE
Confidence 799999999976543 22 2 68999999987655556678899 55567899999999997 777777 7899999
Q ss_pred EECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHH
Q psy12482 349 WDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEIL 388 (419)
Q Consensus 349 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~ 388 (419)
+|+|..++|+|+|+..|++..++.+.++.+.++..|..+.
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~~~G~~~~ 733 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQGYRHVPLLSREGEALS 733 (746)
T ss_pred EecCCCCcccccceeeccHHHhhCceeeeeecCCCCcccc
Confidence 9999999999999999999999999999999998886543
No 225
>KOG1031|consensus
Probab=99.11 E-value=1.7e-10 Score=109.50 Aligned_cols=122 Identities=21% Similarity=0.420 Sum_probs=102.8
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceec-cEEEEEcccCcccccEEEEEEEe
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFD-EVLKFQLTLEDLECRTLWLSVWH 199 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~~l~~~~l~i~v~d 199 (419)
.|.|.|.|..||+||-+|......|.||.|.+. ...+||.+..+++||.|| +.|.|+|...+|++..|.|++.|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~-----n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld 76 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFA-----NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLD 76 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEec-----ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEec
Confidence 367899999999999999764568999999997 457899999999999999 89999999999999999999999
Q ss_pred cCCCCCCceeEEEEEeCcccccCC----------CCCceecCccccchhhhhhccccceEEEEE
Q psy12482 200 SDMFGRNDFLGEVMMSLENKVFDD----------PSPKCYPLQERSEILDELICSKGELIIGLK 253 (419)
Q Consensus 200 ~~~~~~~~~iG~~~~~l~~~~~~~----------~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~ 253 (419)
+|..+.++.||.+.|+++.+-... -...|+++.+. ..+.+|+|.+-+.
T Consensus 77 ~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt------ihgirgeinvivk 134 (1169)
T KOG1031|consen 77 HDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT------IHGIRGEINVIVK 134 (1169)
T ss_pred ccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee------cccccceeEEEEE
Confidence 999999999999999998763321 23579998764 3456688876554
No 226
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.09 E-value=1.2e-09 Score=108.08 Aligned_cols=110 Identities=19% Similarity=0.271 Sum_probs=83.1
Q ss_pred CCEEEEEEEeecCCCCCC-----CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEE
Q psy12482 121 QGALEIHVKQCKDLAPVD-----TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL 195 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~-----~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i 195 (419)
...|.|.|+.+.+++... .....+||||+|.+..-..-..+++|++..++.||+|||+|.|.+...+|. .|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELA--llRf 545 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELA--LLRV 545 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCcee--EEEE
Confidence 367999999999875211 111357999999997322212356888888999999999999998777766 8999
Q ss_pred EEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482 196 SVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS 235 (419)
Q Consensus 196 ~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~ 235 (419)
.|+|+|..++++++|++.+|+..+..+- ...+|....
T Consensus 546 ~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~ 582 (598)
T PLN02230 546 EVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRK 582 (598)
T ss_pred EEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCC
Confidence 9999998889999999999999874332 245565443
No 227
>PLN02270 phospholipase D alpha
Probab=99.09 E-value=9.4e-10 Score=111.02 Aligned_cols=130 Identities=13% Similarity=0.219 Sum_probs=101.8
Q ss_pred CCEEEEEEEeecCCCCCC-----------------CCCCCCCcEEEEEEeCCCCCCCeeecccccCC-CCceeccEEEEE
Q psy12482 121 QGALEIHVKQCKDLAPVD-----------------TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHT-LSPVFDEVLKFQ 182 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~-----------------~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t-~nP~wne~f~f~ 182 (419)
-|.|.|+|.+|++|+.++ ..++.+||||.|.+.. ....+|+++.+. .||.|||+|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~----a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK----ARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC----cEEEEEeecCCCCCCCccccceEEe
Confidence 478999999999998631 1125689999999953 346799999875 599999988887
Q ss_pred cccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCc
Q psy12482 183 LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSS 261 (419)
Q Consensus 183 v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~ 261 (419)
+... -..+.|+|.|.+.+| ..+||.+.|+..++..+...+.|+++....... ...-..|++++.|.|.....
T Consensus 83 ~ah~---~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p---~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 83 CAHM---ASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNP---IHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred eccC---cceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCCCc---CCCCCEEEEEEEEEEcccCc
Confidence 7653 358999999999886 569999999999998888899999987655432 11224899999999876543
No 228
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=99.08 E-value=2.4e-10 Score=81.80 Aligned_cols=99 Identities=18% Similarity=0.247 Sum_probs=80.4
Q ss_pred EEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCC
Q psy12482 278 VLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLT 355 (419)
Q Consensus 278 v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~ 355 (419)
++|.+++||.-...- ....|++..+.-. +....||.++.++.||+|+|+|.|. +-..++++..|.|.|+. .+.
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~ 77 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTP 77 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCC
Confidence 688999999765443 5667888766532 3345789999999999999999997 88899999999999998 566
Q ss_pred CCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHH
Q psy12482 356 SNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQM 393 (419)
Q Consensus 356 ~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l 393 (419)
+.+.||.|.+++++ +...+..||.++
T Consensus 78 RKe~iG~~sL~l~s------------~geeE~~HW~e~ 103 (103)
T cd08684 78 RKRTIGECSLSLRT------------LSTQETDHWLEI 103 (103)
T ss_pred ccceeeEEEeeccc------------CCHHHhhhhhcC
Confidence 78999999999964 566799999763
No 229
>KOG1264|consensus
Probab=99.08 E-value=7.2e-10 Score=109.07 Aligned_cols=126 Identities=19% Similarity=0.324 Sum_probs=90.3
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeecccccCCCCceec-cEEEEEcccCcccccEEEEEEEe
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFD-EVLKFQLTLEDLECRTLWLSVWH 199 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wn-e~f~f~v~~~~l~~~~l~i~v~d 199 (419)
-.|.|.|+.||+|+... ++...|||.|.+....--.. .++|.+..+++||+|| |.|.|.|...++. .|+|.|++
T Consensus 1065 ~~lsv~vigaRHL~k~g--r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A--~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG--RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFA--FLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeeccccccCC--CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceE--EEEEEEec
Confidence 47899999999999554 36677999999974322223 4455567799999999 9999999887655 99999999
Q ss_pred cCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCC
Q psy12482 200 SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPE 258 (419)
Q Consensus 200 ~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~ 258 (419)
.|.++...|||++..|+..+..+- .-.+|.......- ....|++.+...|..
T Consensus 1141 eDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl----ELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL----ELASLLVFIEMRPVL 1192 (1267)
T ss_pred ccccCCcceeeeeecchhhhhccc---eeeecccCchhhh----hhhhheeeeEecccc
Confidence 999998889999999998764331 1233433222111 225566666666553
No 230
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.05 E-value=2.4e-09 Score=105.69 Aligned_cols=109 Identities=23% Similarity=0.326 Sum_probs=81.5
Q ss_pred CCEEEEEEEeecCCC--CC--CC-CCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEE
Q psy12482 121 QGALEIHVKQCKDLA--PV--DT-KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL 195 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~--~~--~~-~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i 195 (419)
...|.|.|+.|.+++ .. .. ....+||||+|.+..-..-..+++|+++.++.||+|||+|.|.+...++. .|+|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLA--llRf 528 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELA--LLRL 528 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCcee--EEEE
Confidence 357999999998753 11 11 11357999999996322213467899999989999999999998777666 8999
Q ss_pred EEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482 196 SVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234 (419)
Q Consensus 196 ~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 234 (419)
.|+|+|..+.+++||++.+|+..+..+- ...+|...
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~ 564 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSR 564 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCC
Confidence 9999998888999999999999864332 24455444
No 231
>PLN02228 Phosphoinositide phospholipase C
Probab=99.04 E-value=3.5e-09 Score=104.29 Aligned_cols=128 Identities=19% Similarity=0.319 Sum_probs=92.5
Q ss_pred CCEEEEEEEeecCCCC---CCC--CCCCCCcEEEEEEeCCCCCCCeeecccccCCCCcee-ccEEEEEcccCcccccEEE
Q psy12482 121 QGALEIHVKQCKDLAP---VDT--KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVF-DEVLKFQLTLEDLECRTLW 194 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~---~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~l~~~~l~ 194 (419)
...|.|.|+.|++|+. ... .....||||+|.+.+-..-..+++|++++++.||+| ||+|.|.+...++. .|+
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA--~lR 507 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELA--LLW 507 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCcee--EEE
Confidence 3479999999998732 111 113479999999873222234679999988899999 99999998777666 899
Q ss_pred EEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 195 LSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 195 i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
|.|+|+|..+.+++||++.+++..+..+- ...+|.......- ..+.|.+.+.+.+.
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l----~~atLfv~~~~~~~ 563 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY----KNTRLLVSFALDPP 563 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC----CCeEEEEEEEEcCc
Confidence 99999998888999999999999874321 2456654433211 12568888877664
No 232
>PLN02270 phospholipase D alpha
Probab=99.01 E-value=3.1e-10 Score=114.44 Aligned_cols=120 Identities=17% Similarity=0.294 Sum_probs=94.2
Q ss_pred cceEEEEEeccccccccC-----------------C--CCCCcEEEEEEeCCCCCcceeecccccCC-CCCccccEEEEc
Q psy12482 273 KGSLHVLIKEAKSLCPVK-----------------S--NTVDAFCKAYLLPDKGRASKHKTGIIKRS-TSPQWNHTVVYR 332 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~-----------------~--~~~dpyV~v~~~~~~~~~~~~~T~~~~~t-~nP~wne~f~f~ 332 (419)
-|.|.|+|++|++|++++ . ..+||||.|.+ .+....||+++.+. .||.|||.|..+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~----~~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL----EKARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe----CCcEEEEEeecCCCCCCCccccceEEe
Confidence 589999999999998631 1 16799999999 56678899999884 699999999875
Q ss_pred ccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCCCC
Q psy12482 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLE 412 (419)
Q Consensus 333 ~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~~~ 412 (419)
.-... ..|.|+|.|.+.+| ..+||.+.|+..+ -.+|.+++.|++++..-++++..--.|+.+.+
T Consensus 83 ---~ah~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~-----------~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (808)
T PLN02270 83 ---CAHMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEE-----------ILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQ 146 (808)
T ss_pred ---eccCc-ceEEEEEecCCccC-ceEEEEEEEEHHH-----------hcCCCccccEEeccCCCCCcCCCCCEEEEEEE
Confidence 32332 55999999999998 5599999999987 35677788888888887777766555555543
No 233
>KOG0169|consensus
Probab=98.95 E-value=4.3e-09 Score=104.18 Aligned_cols=97 Identities=27% Similarity=0.458 Sum_probs=78.0
Q ss_pred EEEEEEEeecCCCCCCCC---CCCCCcEEEEEEeCCCCCCCeeecc-cccCCCCceeccEEEEEcccCcccccEEEEEEE
Q psy12482 123 ALEIHVKQCKDLAPVDTK---RQRSDPYVKVYLLPDKSKAGKRKTR-VKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVW 198 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~---~~~~dpyv~v~l~~~~~~~~~~kT~-~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~ 198 (419)
.|.|.|+.+.+++..... +..+||||.|.+..-..-....+|+ +..++-||.|+|+|.|.+...+|. .|+|.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELA--liRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELA--LIRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecccee--EEEEEEE
Confidence 699999999976553321 1457899988875222223467899 556899999999999999988887 8999999
Q ss_pred ecCCCCCCceeEEEEEeCccccc
Q psy12482 199 HSDMFGRNDFLGEVMMSLENKVF 221 (419)
Q Consensus 199 d~~~~~~~~~iG~~~~~l~~~~~ 221 (419)
|+|..++|+|+|+..+|+..+..
T Consensus 695 d~d~~~~ddF~GQ~tlP~~~L~~ 717 (746)
T KOG0169|consen 695 DYDYIGKDDFIGQTTLPVSELRQ 717 (746)
T ss_pred ecCCCCcccccceeeccHHHhhC
Confidence 99999999999999999998743
No 234
>KOG1264|consensus
Probab=98.95 E-value=2.9e-09 Score=104.88 Aligned_cols=121 Identities=16% Similarity=0.212 Sum_probs=98.0
Q ss_pred cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCccee-ecccccCCCCCccc-cEEEEcccCccccccCeEEEEEEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKH-KTGIIKRSTSPQWN-HTVVYRDVSLEELSERCLELTVWD 350 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~-~T~~~~~t~nP~wn-e~f~f~~v~~~~~~~~~l~i~V~d 350 (419)
...|.|.|+.||.|+....+...|||.|.+.+......++ +|.+..+.+||+|| |.|.|. |..+++ .-|+|.|+|
T Consensus 1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFe-I~nPe~--A~lRF~V~e 1140 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFE-IYNPEF--AFLRFVVYE 1140 (1267)
T ss_pred ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEE-eeCCce--EEEEEEEec
Confidence 3678999999999995554466799999998765555544 55555678999999 999997 654444 779999999
Q ss_pred CCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhC
Q psy12482 351 HDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMER 396 (419)
Q Consensus 351 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~ 396 (419)
.|.++...|||+++.++..|+.+-+.++.-+...++++.=.-|+.-
T Consensus 1141 eDmfs~~~FiaqA~yPv~~ik~GfRsVpLkN~ySEdlELaSLLv~i 1186 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKSGFRSVPLKNGYSEDLELASLLVFI 1186 (1267)
T ss_pred ccccCCcceeeeeecchhhhhccceeeecccCchhhhhhhhheeee
Confidence 9999999999999999999999988888888888877765544443
No 235
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.86 E-value=9.3e-09 Score=79.64 Aligned_cols=92 Identities=24% Similarity=0.371 Sum_probs=69.8
Q ss_pred EEEEEeccccccccC-------------CC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccC------
Q psy12482 276 LHVLIKEAKSLCPVK-------------SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVS------ 335 (419)
Q Consensus 276 l~v~v~~a~~L~~~~-------------~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~------ 335 (419)
|.|.|++|.+|+++- .. ..|+||++.+..- ...+.++|+++.++..|.||..++|+ .+
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl-~~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~ 78 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFL-PEKELRRTRTVARSFCPEFNHHVEFP-CNLVVQRN 78 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccC-CCCceeeccchhhhcCCCccceEEEe-cccEEEcC
Confidence 468899999998641 12 5789999996432 24567999999999999999999997 44
Q ss_pred -------ccccccCeEEEEEEECCCC----------CCCceeEEEEEeCCC
Q psy12482 336 -------LEELSERCLELTVWDHDRL----------TSNEFLGGIRLNLGH 369 (419)
Q Consensus 336 -------~~~~~~~~l~i~V~d~~~~----------~~~~~lG~~~i~l~~ 369 (419)
.+.|+...|.|+||+.... .+|-+||.+.|++.+
T Consensus 79 ~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~ 129 (143)
T cd08683 79 SGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRD 129 (143)
T ss_pred CCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHH
Confidence 1335567799999996543 245589999999965
No 236
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.77 E-value=2.6e-08 Score=74.95 Aligned_cols=83 Identities=13% Similarity=0.236 Sum_probs=65.3
Q ss_pred EEEEEEeecCCCCCC---CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482 124 LEIHVKQCKDLAPVD---TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 124 L~v~v~~a~~L~~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
|.|+|..|+|+...+ .. +.++|||.+.+.. ..+.+|++ +.||.|||.|.|.|.. ...+.|.|||.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~-~~~etyV~IKved----~~kaRTr~---srnd~WnE~F~i~Vdk----~nEiel~VyDk 68 (109)
T cd08689 1 LTITITSARDVDHIASPRFS-KRPETYVSIKVED----VERARTKP---SRNDRWNEDFEIPVEK----NNEEEVIVYDK 68 (109)
T ss_pred CEEEEEEEecCccccchhhc-cCCCcEEEEEECC----EEEEeccC---CCCCcccceEEEEecC----CcEEEEEEEeC
Confidence 678999999998877 34 7789999999963 22577777 4799999999999832 44899999998
Q ss_pred CCCCCCceeEEEEEeCccc
Q psy12482 201 DMFGRNDFLGEVMMSLENK 219 (419)
Q Consensus 201 ~~~~~~~~iG~~~~~l~~~ 219 (419)
.. ...-.||..-+.++++
T Consensus 69 ~~-~~~~Pi~llW~~~sdi 86 (109)
T cd08689 69 GG-DQPVPVGLLWLRLSDI 86 (109)
T ss_pred CC-CeecceeeehhhHHHH
Confidence 53 2456788888887775
No 237
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.73 E-value=2.4e-08 Score=75.17 Aligned_cols=82 Identities=20% Similarity=0.283 Sum_probs=63.8
Q ss_pred EEEEEeccccccccCC---C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482 276 LHVLIKEAKSLCPVKS---N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH 351 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~---~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 351 (419)
|.|+|..||||...+. . .+||||.+++ ....+.||++ +.||.|||.|.|+ + +. ...+.|.|||.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv----ed~~kaRTr~---srnd~WnE~F~i~-V--dk--~nEiel~VyDk 68 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKV----EDVERARTKP---SRNDRWNEDFEIP-V--EK--NNEEEVIVYDK 68 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEE----CCEEEEeccC---CCCCcccceEEEE-e--cC--CcEEEEEEEeC
Confidence 5789999999988773 3 7899999999 4455788887 4899999999996 5 22 35599999997
Q ss_pred CCCCCCceeEEEEEeCCCC
Q psy12482 352 DRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 352 ~~~~~~~~lG~~~i~l~~~ 370 (419)
.. ...--+|..-|.+++|
T Consensus 69 ~~-~~~~Pi~llW~~~sdi 86 (109)
T cd08689 69 GG-DQPVPVGLLWLRLSDI 86 (109)
T ss_pred CC-CeecceeeehhhHHHH
Confidence 54 2345688888887764
No 238
>KOG2060|consensus
Probab=98.72 E-value=6.4e-09 Score=94.56 Aligned_cols=126 Identities=25% Similarity=0.450 Sum_probs=104.6
Q ss_pred eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE 186 (419)
Q Consensus 107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~ 186 (419)
..|+|++.+. ...+.|.|.|++|++|......+..++|||+|++++.+.-..+.+|+..++|++|.|-+...|+-++
T Consensus 256 ~mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp- 332 (405)
T KOG2060|consen 256 NMGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP- 332 (405)
T ss_pred ccccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-
Confidence 4677777654 5678999999999999887766567999999999988887888999999999999999888886433
Q ss_pred cccccEEEEEEEe-cCCCCCCceeEEEEEeCcccccCC-CCCceecCccccch
Q psy12482 187 DLECRTLWLSVWH-SDMFGRNDFLGEVMMSLENKVFDD-PSPKCYPLQERSEI 237 (419)
Q Consensus 187 ~l~~~~l~i~v~d-~~~~~~~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~~~ 237 (419)
....|.+.||. +..+..+.|+|.+++-+.++.... +...||+|.+....
T Consensus 333 --~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl 383 (405)
T KOG2060|consen 333 --PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL 383 (405)
T ss_pred --CccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence 57799999995 466667789999999999998877 78899999876443
No 239
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.50 E-value=9.2e-08 Score=74.19 Aligned_cols=105 Identities=26% Similarity=0.470 Sum_probs=77.2
Q ss_pred EEEEEEeecCCCCCC-----------CC-CCCCCcEEEEEEe--CCCCCCCeeecccccCCCCceeccEEEEEccc----
Q psy12482 124 LEIHVKQCKDLAPVD-----------TK-RQRSDPYVKVYLL--PDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL---- 185 (419)
Q Consensus 124 L~v~v~~a~~L~~~~-----------~~-~~~~dpyv~v~l~--~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~---- 185 (419)
|.|.|++|.+|.... .. .-..|+||++.+. ++++ .++|+++.++-.|.|+..++|.++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e---~r~TrtVArSFcPeF~Hh~Efpc~lv~~~ 77 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKE---LRRTRTVARSFCPEFNHHVEFPCNLVVQR 77 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCc---eeeccchhhhcCCCccceEEEecccEEEc
Confidence 467888888885421 00 0135899999864 4443 5899999999999999999998651
Q ss_pred ---------CcccccEEEEEEEecCCC----------CCCceeEEEEEeCccccc-CCCCCceecC
Q psy12482 186 ---------EDLECRTLWLSVWHSDMF----------GRNDFLGEVMMSLENKVF-DDPSPKCYPL 231 (419)
Q Consensus 186 ---------~~l~~~~l~i~v~d~~~~----------~~~~~iG~~~~~l~~~~~-~~~~~~w~~L 231 (419)
+.|....+.++||+...- .+|-+||.+.||+.++.. ..+...||++
T Consensus 78 ~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 78 NSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 234567899999997432 245699999999998754 4578899985
No 240
>KOG2060|consensus
Probab=98.50 E-value=1.8e-07 Score=85.26 Aligned_cols=96 Identities=25% Similarity=0.419 Sum_probs=81.3
Q ss_pred CCCcceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEE
Q psy12482 270 SAAKGSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELT 347 (419)
Q Consensus 270 ~~~~~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~ 347 (419)
....|.|.|.|++|++|...... .++|||+|++..++.-.-+.+|+...+|.+|-+-+...|. +......|.+.
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~----~sp~~k~Lq~t 340 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD----QSPPGKYLQGT 340 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc----cCCCccEEEEE
Confidence 44579999999999999876554 7899999999988877888999999999999998888884 34445679999
Q ss_pred EE-ECCCCCCCceeEEEEEeCCC
Q psy12482 348 VW-DHDRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 348 V~-d~~~~~~~~~lG~~~i~l~~ 369 (419)
|| |+.++..+.|||.++|-+.+
T Consensus 341 v~gdygRmd~k~fmg~aqi~l~e 363 (405)
T KOG2060|consen 341 VWGDYGRMDHKSFMGVAQIMLDE 363 (405)
T ss_pred EeccccccchHHHhhHHHHHhhh
Confidence 99 57888889999999998876
No 241
>PLN02352 phospholipase D epsilon
Probab=98.39 E-value=2.1e-06 Score=87.01 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=86.2
Q ss_pred CCEEEEEEEeecCCCCC----CCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEE
Q psy12482 121 QGALEIHVKQCKDLAPV----DTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLS 196 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~----~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~ 196 (419)
-|.|.++|.+|+-+... ...+...+|||.|.+.. ....+| .+..||.|||+|...+... .+..+.|+
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~----~~v~rt---~~~~~p~w~e~f~i~~ah~--~~~~~~f~ 79 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN----KKVAKT---SHEYDRVWNQTFQILCAHP--LDSTITIT 79 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC----cEEecC---CCCCCCccccceeEEeeee--cCCcEEEE
Confidence 36777888888733221 11111239999999952 224566 5566999999887776553 23479999
Q ss_pred EEecCCCCCCceeEEEEEeCcccccCCC-CCceecCccccchhhhhhccccceEEEEEEeCCCCC
Q psy12482 197 VWHSDMFGRNDFLGEVMMSLENKVFDDP-SPKCYPLQERSEILDELICSKGELIIGLKFVPPEDS 260 (419)
Q Consensus 197 v~d~~~~~~~~~iG~~~~~l~~~~~~~~-~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~ 260 (419)
|.| ...+||.+.|+..++..+.. .+.|+++........ .. ..|++++.|.|....
T Consensus 80 vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~---~~-~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 80 LKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN---PE-LKLRFMLWFRPAELE 135 (758)
T ss_pred Eec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC---CC-CEEEEEEEEEEhhhC
Confidence 988 36899999999999877756 899999876554321 11 589999999988765
No 242
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.37 E-value=6e-05 Score=70.34 Aligned_cols=224 Identities=20% Similarity=0.220 Sum_probs=150.9
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc-----cccEEEEEEE
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL-----ECRTLWLSVW 198 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l-----~~~~l~i~v~ 198 (419)
+.|.|++|++.+.... -.-.+..++. .....|..+..+..|.||....+++....+ ++..|++++|
T Consensus 2 ivl~i~egr~F~~~~~----~~~vv~a~~n-----g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR----HPIVVEAKFN-----GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCF 72 (340)
T ss_pred EEEEEecccCCCCCCC----ccEEEEEEeC-----CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEE
Confidence 6789999999987632 2456666775 345788899999999999999998665443 5678999999
Q ss_pred ecC-CCCCCceeEEEEEeCccc---ccC--CCCCceecCccccchhhhhhccccceEEEEEEeCCCCCcc----------
Q psy12482 199 HSD-MFGRNDFLGEVMMSLENK---VFD--DPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSL---------- 262 (419)
Q Consensus 199 d~~-~~~~~~~iG~~~~~l~~~---~~~--~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~---------- 262 (419)
..+ ..++.+.||.+.++|... ... .....||+|....... ...+-+|.+++..........
T Consensus 73 a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y---~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~ 149 (340)
T PF12416_consen 73 AVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKY---KKHKPELLLSLSIEDDSKPQTPDFESFKAKP 149 (340)
T ss_pred EecCCCCcceeccEEEEEccccccccccccccCCCeeEcccccccc---ccCCccEEEEEEEeccccccCCccccccccC
Confidence 987 566889999999999987 333 3557899997653321 345578999888765544210
Q ss_pred ccc----------------------------cccC---CCCcceEEEEEeccccccccC----CC---CCCcEEEEEEeC
Q psy12482 263 SSA----------------------------KKSS---SAAKGSLHVLIKEAKSLCPVK----SN---TVDAFCKAYLLP 304 (419)
Q Consensus 263 ~~~----------------------------~~~~---~~~~~~l~v~v~~a~~L~~~~----~~---~~dpyV~v~~~~ 304 (419)
... ...+ ......|.|++..|+||...- .. ...-|....+.+
T Consensus 150 ~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG 229 (340)
T PF12416_consen 150 APPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG 229 (340)
T ss_pred CCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC
Confidence 000 0001 122457889999999987661 11 245677777765
Q ss_pred CCCCcceeecccccCCCCCcc--ccEEEEcccC--ccccc-----cCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 305 DKGRASKHKTGIIKRSTSPQW--NHTVVYRDVS--LEELS-----ERCLELTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 305 ~~~~~~~~~T~~~~~t~nP~w--ne~f~f~~v~--~~~~~-----~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
+. ..|.......+|.| ++...|. +. ...+. ...|.|.++. .+..||.+.|++..+
T Consensus 230 n~-----Vt~~~F~~l~~~~f~~er~s~vR-irSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~L 293 (340)
T PF12416_consen 230 ND-----VTTEPFKSLSSPSFPPERASGVR-IRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPL 293 (340)
T ss_pred cE-----eEeeeccccCCCCcCeeeeeEEe-ecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhc
Confidence 54 66677777788866 4443242 21 22221 3447788876 367899999999874
No 243
>PLN02352 phospholipase D epsilon
Probab=98.22 E-value=9.7e-07 Score=89.41 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=77.0
Q ss_pred cceEEEEEecccccccc----CC-C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEE
Q psy12482 273 KGSLHVLIKEAKSLCPV----KS-N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLEL 346 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~----~~-~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i 346 (419)
-|.|.++|.+|+-+... +. + ..||||.|.+ .+....|| .+..||.|||.|..+ .....+..|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~----~~~~v~rt---~~~~~p~w~e~f~i~---~ah~~~~~~~f 78 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI----GNKKVAKT---SHEYDRVWNQTFQIL---CAHPLDSTITI 78 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEe----CCcEEecC---CCCCCCccccceeEE---eeeecCCcEEE
Confidence 58888999998733221 11 1 3499999999 55566777 445699999999875 44444445999
Q ss_pred EEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchh-HHHHHHHHhCCCceEEeeeeccCC
Q psy12482 347 TVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKE-ILLWQQMMERPNFWVESCIPLRSS 410 (419)
Q Consensus 347 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~-~~~W~~l~~~p~~~i~~w~~l~~~ 410 (419)
+|.| ...+||.+.|++.++ .+|.. ++.|++++..-++++.+ -.|+.+
T Consensus 79 ~vk~-----~~~~ig~~~~p~~~~-----------~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~ 126 (758)
T PLN02352 79 TLKT-----KCSILGRFHIQAHQI-----------VTEASFINGFFPLIMENGKPNPE-LKLRFM 126 (758)
T ss_pred EEec-----CCeEEEEEEEEHHHh-----------hCCCcccceEEEcccCCCCCCCC-CEEEEE
Confidence 9999 267999999999773 34533 77777777776666655 444444
No 244
>KOG3837|consensus
Probab=97.78 E-value=1.5e-05 Score=73.67 Aligned_cols=130 Identities=20% Similarity=0.222 Sum_probs=98.3
Q ss_pred cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc---------ccc
Q psy12482 120 KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED---------LEC 190 (419)
Q Consensus 120 ~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~---------l~~ 190 (419)
....|.+.|+++.+++..... -..|-||++.+.-......+.+|.+++.|.+|.|+|.|...|.... ..+
T Consensus 365 ~d~elel~ivrg~~~pvp~gp-~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGP-MHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred chhHhHHHHhhcccCCCCCCc-hhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 456788999999988766532 3468899998752223345789999999999999999998876521 134
Q ss_pred cEEEEEEEecCCC-CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482 191 RTLWLSVWHSDMF-GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVP 256 (419)
Q Consensus 191 ~~l~i~v~d~~~~-~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~ 256 (419)
..+.|++|+...+ .+|.++|.+.+.|.-+...-+....++|.+..+. .-|.|.+.++...
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~------vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKA------VGGKLEVKVRIRQ 504 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccc------cCCeeEEEEEEec
Confidence 5799999998664 4688999999999988877788889998765443 2378888777653
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.62 E-value=0.00013 Score=73.65 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=69.8
Q ss_pred CCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEE
Q psy12482 271 AAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWD 350 (419)
Q Consensus 271 ~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d 350 (419)
.-.|...+++.+|+ |+ ..|+|..+.. -+..+.||.+.+.|.||+|||.-.|- +-.... ....|.|||
T Consensus 51 ~~~~~~~~~~~~~~----~~--~~~~~~~~~~----~g~~~f~t~~~~~~~~p~~~~~~~~~-~~~~~~--~~~~~~~~~ 117 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK--FKDKWLACVS----FGEQTFRTETSDSTDKPVWNSEKKLL-LEKNGP--HLARISVFE 117 (644)
T ss_pred cccCeEEEEeehhh----hc--cCCcEEEEEE----ecceeeeeccccccCCcccchhhceE-eccCCc--ceEEEEEEe
Confidence 33799999999997 33 2588876654 24557999999999999999998884 555554 336999999
Q ss_pred CCCCCCCceeEEEEEeCCCC
Q psy12482 351 HDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 351 ~~~~~~~~~lG~~~i~l~~~ 370 (419)
++.++.++++|.|.++|.++
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f 137 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDF 137 (644)
T ss_pred cCCCCHHHhhhheeecHhhc
Confidence 99999999999999988764
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=97.61 E-value=8.7e-05 Score=74.95 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=72.3
Q ss_pred ccCCEEEEEEEeecCCCCCCCCCCCCCcEEE-EEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEE
Q psy12482 119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVK-VYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSV 197 (419)
Q Consensus 119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~-v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v 197 (419)
+-.|.+.+++++|+ ++ ..|+|.. ++++ .+.+||.+.++|.||+||+...|.|...++. ...|.|
T Consensus 51 ~~~~~~~~~~~~~~----~~----~~~~~~~~~~~g-----~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~ 115 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK----FKDKWLACVSFG-----EQTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISV 115 (644)
T ss_pred cccCeEEEEeehhh----hc----cCCcEEEEEEec-----ceeeeeccccccCCcccchhhceEeccCCcc--eEEEEE
Confidence 44688899999987 33 2477754 4554 5589999999999999999999999888766 569999
Q ss_pred EecCCCCCCceeEEEEEeCccccc
Q psy12482 198 WHSDMFGRNDFLGEVMMSLENKVF 221 (419)
Q Consensus 198 ~d~~~~~~~~~iG~~~~~l~~~~~ 221 (419)
||.+.++.++++|.|.++|.++..
T Consensus 116 ~~~~~~s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 116 FETNRLSKNTLVGYCELDLFDFVT 139 (644)
T ss_pred EecCCCCHHHhhhheeecHhhccH
Confidence 999999999999999998876543
No 247
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.51 E-value=0.0015 Score=54.35 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=67.2
Q ss_pred cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCc-ceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRA-SKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD 350 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~-~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d 350 (419)
...++|.|.+|.++...+ .+|-||++.+..++... ....|..+.. .++.|||.+.|+ |...++. ++.|.|+||+
T Consensus 7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcc-cchhcCChhheEEEEEEE
Confidence 357899999999987532 57899999988754322 2234444443 679999999997 7777775 5669999999
Q ss_pred CCCCC----CCceeEEEEEeCCC
Q psy12482 351 HDRLT----SNEFLGGIRLNLGH 369 (419)
Q Consensus 351 ~~~~~----~~~~lG~~~i~l~~ 369 (419)
..... ....||.+.+.|-+
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EecccCCCCceEEEEEEEEEEEC
Confidence 65321 22569999999866
No 248
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.47 E-value=0.00083 Score=55.90 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=68.0
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEE
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVW 198 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~ 198 (419)
...++|.|+.|.++... ...+-||++.+-.+++... ...|+.+.. .++.|||...|+|...+| .++.|.|+||
T Consensus 7 ~~~~~v~i~~~~~~~~~----~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 7 NSNLRIKILCATYVNVN----DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCCeEEEEEeeccCCCC----CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEE
Confidence 35689999999998864 2358999998876554432 234444443 679999999999887777 4678999999
Q ss_pred ecCCCC----CCceeEEEEEeCcc
Q psy12482 199 HSDMFG----RNDFLGEVMMSLEN 218 (419)
Q Consensus 199 d~~~~~----~~~~iG~~~~~l~~ 218 (419)
+..... ....||.+.++|-+
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEEC
Confidence 976421 23579999999866
No 249
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.41 E-value=0.00092 Score=55.98 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=68.9
Q ss_pred cceEEEEEeccccccccCCCCCCcEEEEEEeCCCC-CcceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKG-RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD 350 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~-~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d 350 (419)
...++|.+..+.++...+....+-||++.+..++. ......|.......++.|||.+.|+ +...++. +..|.|+||+
T Consensus 7 ~~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 7 NFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIYA 85 (156)
T ss_pred CCCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEEE
Confidence 35678888888888652222567889998876543 2333455444444689999999997 6666664 5679999999
Q ss_pred CCCCC--CCceeEEEEEeCCC
Q psy12482 351 HDRLT--SNEFLGGIRLNLGH 369 (419)
Q Consensus 351 ~~~~~--~~~~lG~~~i~l~~ 369 (419)
.+..+ ....||.+.++|-+
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EecCCCCcceEEEEEeEEeEc
Confidence 76544 46899999999966
No 250
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.35 E-value=0.0014 Score=55.64 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=69.6
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEE
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVW 198 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~ 198 (419)
...++|+|+.+.+|...+ ...+-||++.+-.+++... ...|+.+.....+.|||.+.|+|...+| .++.|.|.||
T Consensus 7 ~~~f~i~i~~~~~~~~~~---~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~ 83 (173)
T cd08693 7 EEKFSITLHKISNLNAAE---RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIY 83 (173)
T ss_pred CCCEEEEEEEeccCccCC---CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEE
Confidence 357899999999998622 4567899988876554432 3456655556779999999999888777 4678999999
Q ss_pred ecCCCC----------------CCceeEEEEEeCcc
Q psy12482 199 HSDMFG----------------RNDFLGEVMMSLEN 218 (419)
Q Consensus 199 d~~~~~----------------~~~~iG~~~~~l~~ 218 (419)
+..... ....||.+.++|-+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 875322 24688888888765
No 251
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.31 E-value=0.0013 Score=55.78 Aligned_cols=95 Identities=13% Similarity=0.225 Sum_probs=69.1
Q ss_pred cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCc-ceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRA-SKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD 350 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~-~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d 350 (419)
...++|+|..+.+|.. .....+.||++.+..++... ....|..+.....+.|||.+.|+ +...+|. +..|.|+||+
T Consensus 7 ~~~f~i~i~~~~~~~~-~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 7 EEKFSITLHKISNLNA-AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCCEEEEEEEeccCcc-CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEEE
Confidence 3579999999999976 22257889999887654322 23456555545679999999997 8777775 5669999998
Q ss_pred CCCCC----------------CCceeEEEEEeCCC
Q psy12482 351 HDRLT----------------SNEFLGGIRLNLGH 369 (419)
Q Consensus 351 ~~~~~----------------~~~~lG~~~i~l~~ 369 (419)
..... ....||.+.+.|-+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 54321 24689999999865
No 252
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.27 E-value=0.0017 Score=54.33 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=68.0
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCC-CeeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEe
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA-GKRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWH 199 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d 199 (419)
..++|.+..+.++..... ...+-||.+.+..+++.. ....|.......++.|||...|.+...+| .++.|.|+||+
T Consensus 8 ~~~~i~i~~~~~~~~~~~--~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINLLDS--EDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeeccccccCC--CceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 467788888888765221 346788888887655432 23344444444789999999999777666 46789999999
Q ss_pred cCCCC--CCceeEEEEEeCcc
Q psy12482 200 SDMFG--RNDFLGEVMMSLEN 218 (419)
Q Consensus 200 ~~~~~--~~~~iG~~~~~l~~ 218 (419)
.+..+ .+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EecCCCCcceEEEEEeEEeEc
Confidence 87554 46799999999866
No 253
>KOG1265|consensus
Probab=97.10 E-value=0.00087 Score=68.00 Aligned_cols=89 Identities=21% Similarity=0.469 Sum_probs=70.2
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEe--CCCCCCCeeeccccc-CCCCceec-cEEEEE-cccCcccccEEEE
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLL--PDKSKAGKRKTRVKK-HTLSPVFD-EVLKFQ-LTLEDLECRTLWL 195 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~--~~~~~~~~~kT~~~~-~t~nP~wn-e~f~f~-v~~~~l~~~~l~i 195 (419)
.+.+.|.|+++.=|..++. ..||.|.+- |.....+.++|++.. ++.||+|+ |.|.|. |-..+|. .|+|
T Consensus 702 A~t~sV~VISgqFLSdrkv-----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRi 774 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKV-----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRI 774 (1189)
T ss_pred EeeEEEEEEeeeecccccc-----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchh--heee
Confidence 3578999999999977654 389999884 555555677888877 78999999 678887 5556665 8999
Q ss_pred EEEecCCCCCCceeEEEEEeCcccc
Q psy12482 196 SVWHSDMFGRNDFLGEVMMSLENKV 220 (419)
Q Consensus 196 ~v~d~~~~~~~~~iG~~~~~l~~~~ 220 (419)
.||+.+ ..+||+=.+++..+.
T Consensus 775 avyeEg----gK~ig~RIlpvd~l~ 795 (1189)
T KOG1265|consen 775 AVYEEG----GKFIGQRILPVDGLN 795 (1189)
T ss_pred eeeccC----Cceeeeeccchhccc
Confidence 999865 479999999988754
No 254
>KOG1265|consensus
Probab=97.04 E-value=0.0011 Score=67.21 Aligned_cols=94 Identities=20% Similarity=0.321 Sum_probs=71.9
Q ss_pred cceEEEEEeccccccccCCCCCCcEEEEEEeCC--CCCcceeecccccC-CCCCccccE-EEEcccCccccccCeEEEEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPD--KGRASKHKTGIIKR-STSPQWNHT-VVYRDVSLEELSERCLELTV 348 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~--~~~~~~~~T~~~~~-t~nP~wne~-f~f~~v~~~~~~~~~l~i~V 348 (419)
.+.+.|+|+.|.=|..++ +..||.|.+.+- ....+.++|+++.+ +.||+|||. |.|..|...++ ..|+|.|
T Consensus 702 A~t~sV~VISgqFLSdrk---vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRiav 776 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK---VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIAV 776 (1189)
T ss_pred EeeEEEEEEeeeeccccc---cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeeee
Confidence 578999999999886655 457999998643 33445678888875 679999854 88876777777 7899999
Q ss_pred EECCCCCCCceeEEEEEeCCCCCcCCc
Q psy12482 349 WDHDRLTSNEFLGGIRLNLGHGKHYSK 375 (419)
Q Consensus 349 ~d~~~~~~~~~lG~~~i~l~~~~~~~~ 375 (419)
|+.. ..+||+=.+++..+..+.+
T Consensus 777 yeEg----gK~ig~RIlpvd~l~~GYr 799 (1189)
T KOG1265|consen 777 YEEG----GKFIGQRILPVDGLNAGYR 799 (1189)
T ss_pred eccC----CceeeeeccchhcccCcce
Confidence 9943 5789999998877655543
No 255
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.93 E-value=0.0037 Score=53.08 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=69.5
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeeccccc----CCCCceeccEEEEEcccCcc-cccEEE
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKK----HTLSPVFDEVLKFQLTLEDL-ECRTLW 194 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~----~t~nP~wne~f~f~v~~~~l-~~~~l~ 194 (419)
...+.|+|..+.+++..... ...+-||.+.+..+++... ...|+... -...+.|||...|.+...+| .++.|.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~-~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQ-SFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred cccEEEEEEEeecCChHHhh-ccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 35688999999999877643 4578999999876654432 22333211 12357799999999877666 467999
Q ss_pred EEEEecCCCC---------CCceeEEEEEeCcc
Q psy12482 195 LSVWHSDMFG---------RNDFLGEVMMSLEN 218 (419)
Q Consensus 195 i~v~d~~~~~---------~~~~iG~~~~~l~~ 218 (419)
|++|+....+ .+..||.+.++|-+
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 9999976543 35689999999866
No 256
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.91 E-value=0.0086 Score=50.73 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=55.0
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEe
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWH 199 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d 199 (419)
...++|.|+.+..+. .+.. ....-||++.+..++......+|....-+.++.|||...|+|...+| ..+.|.|.||+
T Consensus 9 ~~~friki~~~~~~~-~~~~-~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 9 DRKFRVKILGIDIPV-LPRN-TDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCCEEEEEEeecccC-cCCC-CceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 346788888887433 2222 23456777777665544444466666667789999999999888777 46789999998
Q ss_pred cC
Q psy12482 200 SD 201 (419)
Q Consensus 200 ~~ 201 (419)
..
T Consensus 87 ~~ 88 (178)
T cd08399 87 GK 88 (178)
T ss_pred Ee
Confidence 73
No 257
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.90 E-value=0.0043 Score=51.82 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=58.2
Q ss_pred CCCcEEEEEEeCCCCC-cceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482 293 TVDAFCKAYLLPDKGR-ASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWDHDRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 293 ~~dpyV~v~~~~~~~~-~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d~~~~~~~~~lG~~~i~l~~ 369 (419)
.+|-||++.+..++.. .....|..+.-+..+.|||.+.|+ |...++. ++.|.|+||+.+..++...||.+.++|-+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 5788999998765432 223356656556678999999998 8777775 56799999998766667899999999866
No 258
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.89 E-value=0.0059 Score=51.72 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=65.7
Q ss_pred cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD 350 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d 350 (419)
...++|.|.++.+ +..+.+ ....||++.+..++.-....+|..+.-+.++.|||.+.|+ |...++. +..|.|+||+
T Consensus 9 ~~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 9 DRKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECc-cccccCChhhEEEEEEEE
Confidence 3578888888873 344333 4457888877765433334456666666789999999997 8777775 5669999998
Q ss_pred CCCCC----------------CCceeEEEEEeCCC
Q psy12482 351 HDRLT----------------SNEFLGGIRLNLGH 369 (419)
Q Consensus 351 ~~~~~----------------~~~~lG~~~i~l~~ 369 (419)
..... ....||-+.+.|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEc
Confidence 52211 24578889998866
No 259
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.89 E-value=0.0042 Score=51.89 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=59.8
Q ss_pred CCCCcEEEEEEeCCCCCCC-eeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEecCCCCCCceeEEEEEeCcc
Q psy12482 142 QRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218 (419)
Q Consensus 142 ~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~ 218 (419)
..++-||.+.+-.++.... ...|+.+.-+..+.|||...|.|...+| .++.|.|+||+.+..++...||.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 4578899998876554322 3366666666778999999999888777 467999999998766667899999999866
No 260
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.88 E-value=0.0036 Score=53.14 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=69.1
Q ss_pred cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcc-eeeccccc--C--CCCCccccEEEEcccCccccc-cCeEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRAS-KHKTGIIK--R--STSPQWNHTVVYRDVSLEELS-ERCLE 345 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~-~~~T~~~~--~--t~nP~wne~f~f~~v~~~~~~-~~~l~ 345 (419)
...+.|+|..+.+++..... ..|-||++.+..++.... ...|+... + ...+.|||.+.|+ +...++. +..|.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL~ 85 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRLV 85 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEEE
Confidence 46789999999999887665 688999999887543222 22333221 1 2357799999997 6666664 56799
Q ss_pred EEEEECCCCC---------CCceeEEEEEeCCC
Q psy12482 346 LTVWDHDRLT---------SNEFLGGIRLNLGH 369 (419)
Q Consensus 346 i~V~d~~~~~---------~~~~lG~~~i~l~~ 369 (419)
|+||+....+ ....||.+.+.|-+
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 9999965543 35789999999966
No 261
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.83 E-value=0.015 Score=47.84 Aligned_cols=132 Identities=13% Similarity=0.161 Sum_probs=88.4
Q ss_pred cCCEEEEEEEeecCCCCCCC-CCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc----------
Q psy12482 120 KQGALEIHVKQCKDLAPVDT-KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL---------- 188 (419)
Q Consensus 120 ~~~~L~v~v~~a~~L~~~~~-~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l---------- 188 (419)
....|.+.|..++-.-.--. ..+..+..+.+++.-.+ ++++|+.+..+.+|.|+|.|-|.+..+..
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~---QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG---QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC---ceEecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 34568888888886532211 00355667777776443 46999999999999999999999877642
Q ss_pred -cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCcee--cCccccchhhhhhccccceEEEEEEeCC
Q psy12482 189 -ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCY--PLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 189 -~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~--~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
-...|.+.|...+..+...++|+-.++...+........++ +|....... .-..|-|.+++...|.
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~---kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPES---KVPVGILDLRLELLPN 152 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCC---ccceeEEEEEEEeecC
Confidence 12468888888887777789999999888765444432233 333322221 1244888888888775
No 262
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.63 E-value=0.053 Score=44.50 Aligned_cols=121 Identities=19% Similarity=0.285 Sum_probs=76.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEccc------CcccccEEEE
Q psy12482 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTL------EDLECRTLWL 195 (419)
Q Consensus 123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~------~~l~~~~l~i 195 (419)
.+.+.|+++.+++... ...||+....... ....+|.... ....-.|||.|.+.+.. ..++...+.|
T Consensus 8 ~~~l~i~~l~~~p~~~-----~~v~v~wkr~~~~--~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 8 QFDLTIHELENLPSSN-----GKVFVKWKRGDKS--KGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEeECcCCCC-----CEEEEEEEECCCC--ccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 5788899999887621 2344444443211 1123333332 45568999999998433 2256778999
Q ss_pred EEEecCCCCCCceeEEEEEeCcccccC--CCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 196 SVWHSDMFGRNDFLGEVMMSLENKVFD--DPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 196 ~v~d~~~~~~~~~iG~~~~~l~~~~~~--~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
.|+.....++...||.+.|+|+++... .+...-++|.... .....|.+++.+.+.
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~-------~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCK-------KSNATLSISISLSEL 137 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC-------CCCcEEEEEEEEEEC
Confidence 999875434446999999999997664 3444556665541 123678888887765
No 263
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.58 E-value=0.011 Score=48.57 Aligned_cols=74 Identities=23% Similarity=0.277 Sum_probs=54.9
Q ss_pred CcEEEEEEeCCCCCCC--eeecccccCC-CCceeccEEEEEcccCcc-cccEEEEEEEecCCCCCC----ceeEEEEEeC
Q psy12482 145 DPYVKVYLLPDKSKAG--KRKTRVKKHT-LSPVFDEVLKFQLTLEDL-ECRTLWLSVWHSDMFGRN----DFLGEVMMSL 216 (419)
Q Consensus 145 dpyv~v~l~~~~~~~~--~~kT~~~~~t-~nP~wne~f~f~v~~~~l-~~~~l~i~v~d~~~~~~~----~~iG~~~~~l 216 (419)
+.||.+.+..+++... ...|.....+ .++.|||.+.|.+...+| .++.|.|+||........ ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 4577888876665554 2366666655 799999999999887776 467899999998765544 6999999998
Q ss_pred cc
Q psy12482 217 EN 218 (419)
Q Consensus 217 ~~ 218 (419)
-+
T Consensus 83 Fd 84 (142)
T PF00792_consen 83 FD 84 (142)
T ss_dssp B-
T ss_pred EC
Confidence 76
No 264
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.21 E-value=0.015 Score=47.80 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=53.3
Q ss_pred CcEEEEEEeCCCCCcc--eeecccccCC-CCCccccEEEEcccCccccc-cCeEEEEEEECCCCCCC----ceeEEEEEe
Q psy12482 295 DAFCKAYLLPDKGRAS--KHKTGIIKRS-TSPQWNHTVVYRDVSLEELS-ERCLELTVWDHDRLTSN----EFLGGIRLN 366 (419)
Q Consensus 295 dpyV~v~~~~~~~~~~--~~~T~~~~~t-~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d~~~~~~~----~~lG~~~i~ 366 (419)
+-||.+.+..++.... ...|....-+ .++.|||.+.|+ +...++. +..|.|+||..+..... ..||.+.+.
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 4578888876544333 3467766666 799999999997 7777764 56699999997665544 699999999
Q ss_pred CCC
Q psy12482 367 LGH 369 (419)
Q Consensus 367 l~~ 369 (419)
|-+
T Consensus 82 lFd 84 (142)
T PF00792_consen 82 LFD 84 (142)
T ss_dssp SB-
T ss_pred eEC
Confidence 866
No 265
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.11 E-value=0.015 Score=54.53 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=67.8
Q ss_pred EEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccc-----cccCeEEEEEEE
Q psy12482 276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEE-----LSERCLELTVWD 350 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~-----~~~~~l~i~V~d 350 (419)
+.|.|.+|+|.+... .....|..++.+ ....|..+..+..|.||..+.+. +.... .+..+|++++|.
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng-----~~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a 73 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNG-----ESLETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFA 73 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCC-----ceeeecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEE
Confidence 678999999998753 235577777743 34788888889999999999885 54433 346779999999
Q ss_pred CC-CCCCCceeEEEEEeCCCC
Q psy12482 351 HD-RLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 351 ~~-~~~~~~~lG~~~i~l~~~ 370 (419)
-+ ..+..+.+|.+.|+|+.+
T Consensus 74 ~~~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 74 VDGSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred ecCCCCcceeccEEEEEcccc
Confidence 77 567789999999999884
No 266
>KOG3837|consensus
Probab=95.99 E-value=0.0034 Score=58.61 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=74.7
Q ss_pred cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCc-----cc----cccC
Q psy12482 273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSL-----EE----LSER 342 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~-----~~----~~~~ 342 (419)
...|.+.|.++++++..... ..|-||++++.-......+.+|.+++.|.+|.|+|.|... +.. .+ ....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNREFQRRFKRL 444 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeee-ccCCCcccHHHHHHHHhc
Confidence 45688888899988776644 6789999997644345567899999999999999999985 544 11 1244
Q ss_pred eEEEEEEECCC-CCCCceeEEEEEeCCCC
Q psy12482 343 CLELTVWDHDR-LTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 343 ~l~i~V~d~~~-~~~~~~lG~~~i~l~~~ 370 (419)
.++|++++... +.+|.++|.+.|.|..+
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~L 473 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEIL 473 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhh
Confidence 59999999764 56789999999988653
No 267
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=95.95 E-value=0.039 Score=42.23 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=53.1
Q ss_pred EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcc-eeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEECC
Q psy12482 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRAS-KHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWDHD 352 (419)
Q Consensus 276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~-~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d~~ 352 (419)
+.+.+..++++...... .++-||++.+..++.... ...|..+.-...+.|||-+.|+ +...++. +..|.|+||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEee
Confidence 66677777777654444 468999999876543222 3345555545568999999997 7777765 566999999854
No 268
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.84 E-value=0.088 Score=45.30 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=39.1
Q ss_pred cceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCC---CceeEEEEEeCCC
Q psy12482 309 ASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTS---NEFLGGIRLNLGH 369 (419)
Q Consensus 309 ~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~---~~~lG~~~i~l~~ 369 (419)
.....|.+...+.+|.|+|+|.+. +|.......-|.|++++...-.+ ...+|.+.++|-+
T Consensus 58 ~~~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 58 VTSYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp BS-EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred ceEEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 345678888889999999999996 98887778889999999544322 2699999999965
No 269
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=95.80 E-value=0.055 Score=41.40 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=54.3
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEecC
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWHSD 201 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d~~ 201 (419)
+.+.+..+.+....... ..++-||.+.+..+++... ...|..+.-...+.|||...|++...++ .++.|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~-~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSR-DYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCccccc-CcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 56677777777655432 2358899998876554432 3356555556669999999999887776 4678999999864
No 270
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.79 E-value=0.15 Score=43.79 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=38.7
Q ss_pred CeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCC-C--CceeEEEEEeCcc
Q psy12482 160 GKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFG-R--NDFLGEVMMSLEN 218 (419)
Q Consensus 160 ~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~-~--~~~iG~~~~~l~~ 218 (419)
....|.+..++.+|.|+|+|...++.....+.-|.|++++...-. + ...+|.+.++|-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 456788888899999999999999988888889999999975422 1 2689999999876
No 271
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.98 E-value=0.091 Score=44.86 Aligned_cols=59 Identities=15% Similarity=0.312 Sum_probs=47.7
Q ss_pred cceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCC--CceeEEEEEeCC
Q psy12482 309 ASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTS--NEFLGGIRLNLG 368 (419)
Q Consensus 309 ~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~--~~~lG~~~i~l~ 368 (419)
...++|.+.+.+.+|.|||++.+. +|.+.....-|.|++++.....+ ...+|.+-++|-
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 445788999999999999999996 99999999999999988443221 267999988883
No 272
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.93 E-value=0.079 Score=45.23 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=47.2
Q ss_pred CCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCC--CCceeEEEEEeCcc
Q psy12482 159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFG--RNDFLGEVMMSLEN 218 (419)
Q Consensus 159 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~--~~~~iG~~~~~l~~ 218 (419)
...++|.+.....+|.|+|++...|+.+.....-|.|++++..... ....+|-+-++|-+
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 4457889999999999999999999999998899999998864321 12567777777643
No 273
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.89 E-value=0.19 Score=41.44 Aligned_cols=95 Identities=12% Similarity=0.203 Sum_probs=63.6
Q ss_pred CCcceEEEEEeccccccccCC---CCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccc-------
Q psy12482 271 AAKGSLHVLIKEAKSLCPVKS---NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS------- 340 (419)
Q Consensus 271 ~~~~~l~v~v~~a~~L~~~~~---~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~------- 340 (419)
+....|.+.|..++..-..-. ...+.-+.+.+.- +..+++|+.+..+.+|.|+|.|-|+ +..+...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f---~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~ 81 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF---RGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATT 81 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe---cCceEecCCcccccCCCCCCcEEEE-ecccccccccchhH
Confidence 446789999999987543222 2344455555532 3456999999999999999999996 6554311
Q ss_pred ----cCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482 341 ----ERCLELTVWDHDRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 341 ----~~~l~i~V~d~~~~~~~~~lG~~~i~l~~ 369 (419)
...|.+.|.--|..+...++|.-.++.+.
T Consensus 82 lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~ 114 (156)
T PF15627_consen 82 LLSISDPIHIVLIRTDPSGETTLVGSHFLDWRK 114 (156)
T ss_pred hhcCCCceEEEEEEecCCCceEeeeeceehHHH
Confidence 23477778777766656777776665443
No 274
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.23 E-value=0.34 Score=41.49 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=46.6
Q ss_pred CCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC-CCC---ceeEEEEEeCc
Q psy12482 159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF-GRN---DFLGEVMMSLE 217 (419)
Q Consensus 159 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~-~~~---~~iG~~~~~l~ 217 (419)
....+|.+.....+|.|+|++...|+.+.....-|.|++++.... .+| ..+|-+-++|-
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 446788888899999999999999999999899999999886422 122 46777777764
No 275
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.13 E-value=0.22 Score=42.71 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=48.0
Q ss_pred CcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC-CC---CceeEEEEEeCC
Q psy12482 308 RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL-TS---NEFLGGIRLNLG 368 (419)
Q Consensus 308 ~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~-~~---~~~lG~~~i~l~ 368 (419)
.....+|.+.+.+.+|.|||++... +|.+.....-|.|++++.... .+ ...+|.+-++|-
T Consensus 51 ~~se~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 51 PIDEYKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred cceeEEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4556788898999999999999996 999999999999999885432 11 256898888884
No 276
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.05 E-value=1.1 Score=36.63 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=57.6
Q ss_pred cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeeccccc-CCCCCccccEEEEcccCcc------ccccCeEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIK-RSTSPQWNHTVVYRDVSLE------ELSERCLE 345 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~-~t~nP~wne~f~f~~v~~~------~~~~~~l~ 345 (419)
...+.+.|+++.+++. .+..|.|.............|.... ....-.|||.|.++ +.+. .+....+.
T Consensus 6 kf~~~l~i~~l~~~p~-----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS-----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFP-CTLYRDKKSKEFQPKELK 79 (143)
T ss_pred eEEEEEEEEEeECcCC-----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEE-EEEEEcCCCCcEeeEEEE
Confidence 4678899999999986 2334444432221111122333322 23456999999996 4332 25667799
Q ss_pred EEEEECCCCCCCceeEEEEEeCCCC
Q psy12482 346 LTVWDHDRLTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 346 i~V~d~~~~~~~~~lG~~~i~l~~~ 370 (419)
|.|+....-++...||.+.|+|+++
T Consensus 80 ~~v~~~~~~~~k~~lG~~~inLaey 104 (143)
T PF10358_consen 80 FSVFEVDGSGKKKVLGKVSINLAEY 104 (143)
T ss_pred EEEEEecCCCccceEEEEEEEHHHh
Confidence 9999875434446999999999873
No 277
>KOG1452|consensus
Probab=92.31 E-value=0.68 Score=42.13 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=56.8
Q ss_pred EEccCCEEEEEEEeecCCCCCCCCC-CCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEE
Q psy12482 117 YNYKQGALEIHVKQCKDLAPVDTKR-QRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL 195 (419)
Q Consensus 117 y~~~~~~L~v~v~~a~~L~~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i 195 (419)
....+|.|.+++..+|+|.-....+ -..+-|+.+.... ..+.+|.+.....--.|.|+|..++-. ...+.+
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr----qh~aRt~vrs~~~~f~w~e~F~~Dvv~----~~vl~~ 117 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR----QHPARTRVRSSGPGFAWAEDFKHDVVN----IEVLHY 117 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecc----cCccccccccCCCCccchhhceeeccc----ceeeeE
Confidence 3355799999999999997543322 3567888877741 224556655555555778988887543 337788
Q ss_pred EEEecCCCCCCcee
Q psy12482 196 SVWHSDMFGRNDFL 209 (419)
Q Consensus 196 ~v~d~~~~~~~~~i 209 (419)
-||.++.-.++++.
T Consensus 118 lvySW~pq~RHKLC 131 (442)
T KOG1452|consen 118 LVYSWPPQRRHKLC 131 (442)
T ss_pred EEeecCchhhcccc
Confidence 88988765566643
No 278
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.06 E-value=1.6 Score=32.26 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=54.4
Q ss_pred CCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCC
Q psy12482 144 SDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD 223 (419)
Q Consensus 144 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~ 223 (419)
.+..+.+.+.. ....+|.-+. ..+..|++.|.+++.. ...|+|.||-.|. ..+.|-..+.|++.
T Consensus 9 ~eV~avLklDn----~~VgqT~Wk~-~s~q~WDQ~Fti~LdR----sRELEI~VywrD~---RslCav~~lrLEd~---- 72 (98)
T cd08687 9 SEVSAVLKLDN----TVVGQTQWKP-KSNQAWDQSFTLELER----SRELEIAVYWRDW---RSLCAVKFLKLEDE---- 72 (98)
T ss_pred cceEEEEEEcC----eEEeeccccc-cccccccceeEEEeec----ccEEEEEEEEecc---hhhhhheeeEhhhh----
Confidence 45666666642 1234454432 3578999999998755 5589999998774 45778888888872
Q ss_pred CCCceecCccccchhhhhhccccceEEEEEE
Q psy12482 224 PSPKCYPLQERSEILDELICSKGELIIGLKF 254 (419)
Q Consensus 224 ~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~ 254 (419)
....-++|.+ .|.+...+.|
T Consensus 73 ~~~~~~~lep-----------qg~l~~ev~f 92 (98)
T cd08687 73 RHEVQLDMEP-----------QLCLVAELTF 92 (98)
T ss_pred cccceecccc-----------ccEEEEEEEe
Confidence 1123344443 3777777777
No 279
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=90.25 E-value=3.4 Score=35.30 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=44.8
Q ss_pred CCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC--C-------CCceeEEEEEeCc
Q psy12482 159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF--G-------RNDFLGEVMMSLE 217 (419)
Q Consensus 159 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~--~-------~~~~iG~~~~~l~ 217 (419)
.....|.+..++.+|.|.|++...++.......-|.|++|+.+-. . ....+|-+.++|-
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl 122 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL 122 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence 345788888889999999999999988877788999999987521 1 1245676666664
No 280
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=89.59 E-value=2.8 Score=35.80 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=42.4
Q ss_pred eecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC-----CCCceeEEEEEeCcc
Q psy12482 162 RKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF-----GRNDFLGEVMMSLEN 218 (419)
Q Consensus 162 ~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~-----~~~~~iG~~~~~l~~ 218 (419)
++|.+..+ .+|.|+|+|...++.+.....-|.|++++...- .....+|-+.++|-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444445 899999999999977766778999999987532 235688888888765
No 281
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=89.19 E-value=4.7 Score=34.29 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=45.3
Q ss_pred CCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCC------CceeEEEEEeCcc
Q psy12482 159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGR------NDFLGEVMMSLEN 218 (419)
Q Consensus 159 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~------~~~iG~~~~~l~~ 218 (419)
.....|.+..++.+|.|+|++...++.......-|.|++++.+--.+ ...+|-+.++|-+
T Consensus 53 ~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 53 LTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred ceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 44678888889999999999999998877777899999998643211 2457777776643
No 282
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=88.50 E-value=1.7 Score=37.15 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=42.2
Q ss_pred cccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC-----CCCceeEEEEEeCCC
Q psy12482 314 TGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL-----TSNEFLGGIRLNLGH 369 (419)
Q Consensus 314 T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~-----~~~~~lG~~~i~l~~ 369 (419)
|.++....+|.|+|+|... +|.......-|.|++++-..- .....+|.+.++|-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3344444899999999996 887766778899999995532 336789999999865
No 283
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=88.24 E-value=3.1 Score=35.56 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=47.4
Q ss_pred cceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC--C-------CCceeEEEEEeCCC
Q psy12482 309 ASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL--T-------SNEFLGGIRLNLGH 369 (419)
Q Consensus 309 ~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~--~-------~~~~lG~~~i~l~~ 369 (419)
.....|.+...+.+|.|+|.+-.. +|.......-|.|+.++-..- . ....+|.+.++|-.
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 445788899999999999999996 888877788899999995421 1 13569999998854
No 284
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=87.98 E-value=1.5 Score=37.25 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=47.0
Q ss_pred cceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCC------CceeEEEEEeCCC
Q psy12482 309 ASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTS------NEFLGGIRLNLGH 369 (419)
Q Consensus 309 ~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~------~~~lG~~~i~l~~ 369 (419)
.....|.+...+.+|.|+|.+-.. +|.......-|.|+.++-..-.+ ...+|.+.++|-.
T Consensus 53 ~~~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 53 LTEAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred ceeEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 445788889999999999999996 88877777889999999443221 3569999998743
No 285
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=87.24 E-value=2.3 Score=32.82 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=34.8
Q ss_pred EEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccc-----cccCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482 297 FCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEE-----LSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 297 yV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~-----~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~ 369 (419)
||.+.+. .-+.+.|+++. ..+|.+|-+..|. |..++ ++...+.|+++..-. ...+.||.+.|++..
T Consensus 2 Fct~dFy----dfEtq~Tpvv~-G~~p~y~fts~y~-V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ 72 (107)
T PF11618_consen 2 FCTYDFY----DFETQTTPVVR-GLNPFYDFTSQYK-VTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRP 72 (107)
T ss_dssp EEEE-ST----T---EE---EE-SSS----EEEEEE-E--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SH
T ss_pred EEEEEee----ceeeeccccee-CCCccceeEEEEE-EEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechh
Confidence 4555552 23447788877 6899999999995 66654 457789999998653 336899999999954
No 286
>KOG1452|consensus
Probab=84.68 E-value=2.3 Score=38.80 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=50.9
Q ss_pred cceEEEEEeccccccccCC--C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKS--N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVW 349 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~--~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~ 349 (419)
.|.|.++++.+|+|.-... + +.+-|+.+.+ ....+.+|.+......=.|.|.|... +.- ...+.+-||
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~----drqh~aRt~vrs~~~~f~w~e~F~~D-vv~----~~vl~~lvy 120 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP----DRQHPARTRVRSSGPGFAWAEDFKHD-VVN----IEVLHYLVY 120 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeee----cccCccccccccCCCCccchhhceee-ccc----ceeeeEEEe
Confidence 7999999999999976554 5 7899999988 34444555555443344778888764 221 234778888
Q ss_pred ECCCCC
Q psy12482 350 DHDRLT 355 (419)
Q Consensus 350 d~~~~~ 355 (419)
.|+.-.
T Consensus 121 SW~pq~ 126 (442)
T KOG1452|consen 121 SWPPQR 126 (442)
T ss_pred ecCchh
Confidence 887543
No 287
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=81.43 E-value=3.1 Score=32.11 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=34.3
Q ss_pred eeecccccCCCCceeccEEEEEcccCcc-----cccEEEEEEEecCCCCCCceeEEEEEeCcccccC
Q psy12482 161 KRKTRVKKHTLSPVFDEVLKFQLTLEDL-----ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD 222 (419)
Q Consensus 161 ~~kT~~~~~t~nP~wne~f~f~v~~~~l-----~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~ 222 (419)
.+.|.++. +.+|.||-+-.|.|..+++ +...+.|+++..-. ...+.||.+.+++..+...
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLES 76 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH-
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcC
Confidence 45677765 7899999999999887764 67799999998763 2478999999999987533
No 288
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=79.99 E-value=8.4 Score=32.49 Aligned_cols=68 Identities=9% Similarity=0.197 Sum_probs=48.7
Q ss_pred CCCcEEEEEEeCCCCCcceeecccccC--CCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482 293 TVDAFCKAYLLPDKGRASKHKTGIIKR--STSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 293 ~~dpyV~v~~~~~~~~~~~~~T~~~~~--t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~ 369 (419)
...-|+++.+ +.+.+.+|....- ...-.|||.|.+. +. .. ..+|.|+||.... ..+..|+.+.|++-.
T Consensus 36 ~~~~~ikl~~----N~k~V~~T~~~~l~~dF~v~f~~~f~v~-i~--~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~ 105 (168)
T PF15625_consen 36 KTRYYIKLFF----NDKEVSRTRSRPLWSDFRVHFNEIFNVQ-IT--RW-PESIKLEIYEKSG-LSDRLLAEVFVPVPG 105 (168)
T ss_pred heeEEEEEEE----CCEEEEeeeeEecCCCeEEeccCEEEEE-Ee--cC-CCEEEEEEEEccC-ccceEEEEEEeeCCC
Confidence 4567899988 5566666666543 2234679999886 42 22 2559999999887 568999999999755
No 289
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=79.97 E-value=12 Score=30.65 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCC--cceeecccccCCC--CCccccEEEEcccCccccc-cCeE
Q psy12482 271 AAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGR--ASKHKTGIIKRST--SPQWNHTVVYRDVSLEELS-ERCL 344 (419)
Q Consensus 271 ~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~--~~~~~T~~~~~t~--nP~wne~f~f~~v~~~~~~-~~~l 344 (419)
+....|.|.|.+.. |. |.. ..|||+.|++.+..+. ...+.|.+..... -=.||.....+ .+.+.+. ...|
T Consensus 10 ~g~t~l~v~Iekig-lk--da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lq-tple~lp~Gaai 85 (147)
T PF14186_consen 10 PGMTYLSVFIEKIG-LK--DASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQ-TPLEKLPKGAAI 85 (147)
T ss_dssp TT--EEEEEEEEEE--T--TGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-S-S-GGGS-TT-EE
T ss_pred CCCceEEEEEEEEE-EC--ChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEc-CCHHHCCCceEE
Confidence 34566777777764 53 444 6899999999876543 3356677763322 23678777775 6777775 4558
Q ss_pred EEEEEECCCCCCC-ceeEEEEEeCCCCCcC
Q psy12482 345 ELTVWDHDRLTSN-EFLGGIRLNLGHGKHY 373 (419)
Q Consensus 345 ~i~V~d~~~~~~~-~~lG~~~i~l~~~~~~ 373 (419)
.+++.++....+. ...+-+-+.++.+...
T Consensus 86 ~fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 86 FFEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 9999997654433 3455566666665443
No 290
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=72.05 E-value=38 Score=28.47 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=58.4
Q ss_pred EEeccccccccCCCCCCcEEEEEEeCCCC-----Ccc-eeecccccCC-----CCCccccEEEEcccCcccccc-CeEEE
Q psy12482 279 LIKEAKSLCPVKSNTVDAFCKAYLLPDKG-----RAS-KHKTGIIKRS-----TSPQWNHTVVYRDVSLEELSE-RCLEL 346 (419)
Q Consensus 279 ~v~~a~~L~~~~~~~~dpyV~v~~~~~~~-----~~~-~~~T~~~~~t-----~nP~wne~f~f~~v~~~~~~~-~~l~i 346 (419)
.|..|.+... .+-||+-.+..... +.. ...|.+.+.. ..-+||..|.+. ........ ..|.|
T Consensus 7 ~I~~a~~f~~-----~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~-~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFEE-----DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLH-FKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCCC-----CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEE-EEeCCCCCCceEEE
Confidence 4566665543 46688877643211 122 3455555433 235899888885 44444432 45999
Q ss_pred EEEECCCCCCCceeEEEEEeC--CCCCcCCceeecccCCc
Q psy12482 347 TVWDHDRLTSNEFLGGIRLNL--GHGKHYSKLVDWMDSSG 384 (419)
Q Consensus 347 ~V~d~~~~~~~~~lG~~~i~l--~~~~~~~~~~~w~~~~g 384 (419)
+||..|..+++.+.|...+.| ....+.-...-|-...+
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~lP~~pG~h~~~v~~wrP~~~ 120 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHLPTQPGRHEVEVPTWRPVSG 120 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEeCCCCceEEEEEEEEeecCC
Confidence 999999999998877666554 33333333334444333
No 291
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=71.35 E-value=60 Score=27.27 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=37.2
Q ss_pred CCCceeccEEEEEcccCcccc-cEEEEEEEecCCCCCCceeEEEEEeCc
Q psy12482 170 TLSPVFDEVLKFQLTLEDLEC-RTLWLSVWHSDMFGRNDFLGEVMMSLE 217 (419)
Q Consensus 170 t~nP~wne~f~f~v~~~~l~~-~~l~i~v~d~~~~~~~~~iG~~~~~l~ 217 (419)
...-.||.-|.+.+....+.. -.|.|+||..|.++++.+.|-..+.|-
T Consensus 54 ~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 54 DDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred CCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEeC
Confidence 345689988888866555432 489999999999999999988776654
No 292
>KOG0904|consensus
Probab=69.69 E-value=20 Score=37.82 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=46.3
Q ss_pred cceEEEEEeccccccccCCCCCCcEEEEE--EeCCCCCcce-eecccccCCCCCccccEEEEcccCcccccc-CeEEEEE
Q psy12482 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAY--LLPDKGRASK-HKTGIIKRSTSPQWNHTVVYRDVSLEELSE-RCLELTV 348 (419)
Q Consensus 273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~--~~~~~~~~~~-~~T~~~~~t~nP~wne~f~f~~v~~~~~~~-~~l~i~V 348 (419)
...++|.+.++.++-... ..|-+|.|. +..++...-+ +.|..+....+|.||+.++|. |...++.. ..|-|.|
T Consensus 342 ~~~frI~l~~is~~n~~~--t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFD-I~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLPE--TVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFD-IYIKDLPRMARLCLAI 418 (1076)
T ss_pred CCceEEEEeeccccCCCc--ccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEee-eecCCCChhhhheeee
Confidence 456888888887663222 334455544 4443322223 456666667899999999995 76666643 4466776
Q ss_pred EE
Q psy12482 349 WD 350 (419)
Q Consensus 349 ~d 350 (419)
+-
T Consensus 419 ~~ 420 (1076)
T KOG0904|consen 419 YA 420 (1076)
T ss_pred eE
Confidence 65
No 293
>KOG4027|consensus
Probab=67.86 E-value=28 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=24.0
Q ss_pred CeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482 342 RCLELTVWDHDRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 342 ~~l~i~V~d~~~~~~~~~lG~~~i~l~~ 369 (419)
..|.+.|+-.|.+|+|.+.|...|.+-.
T Consensus 83 Pqivl~vfg~d~~G~d~v~GYg~~hiP~ 110 (187)
T KOG4027|consen 83 PQIVLNVFGKDHSGKDCVTGYGMLHIPT 110 (187)
T ss_pred ceEEEEEecCCcCCcceeeeeeeEecCc
Confidence 3499999999999999999988887654
No 294
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=67.82 E-value=50 Score=26.36 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=49.5
Q ss_pred ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD 352 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~ 352 (419)
..|.+.=+.-.++|..+.+ .+.||++|.- +......|........-.=...+.|. ++..-.-..-|.|.+++..
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~----~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~GDV~i~~~~~~ 78 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYN----GGKKVFSTSKSYEDPKSYEQDSVIIE-LPKNLPLRGDVLIKFYHKR 78 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEE----TTEEEEETCCTCCCCCEEETTCEEEE-EEEEEEEESEEEEEEEECE
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEEC----CCccEEEeccceeccccccceeEEEE-eCCCCeEeCCEEEEEEeCC
Confidence 3455555555677877655 7899999985 22333233332221111111223332 2222222344999999977
Q ss_pred C-CCCCceeEEEEEeCCCC
Q psy12482 353 R-LTSNEFLGGIRLNLGHG 370 (419)
Q Consensus 353 ~-~~~~~~lG~~~i~l~~~ 370 (419)
. ...++.|.++.+.-+-+
T Consensus 79 ~~~~~~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 79 SSSMSKEKMFRFWFNTGFI 97 (134)
T ss_dssp TTECCCEEEEEEEEEGGGS
T ss_pred CcccccCeEEEEEEeeeee
Confidence 3 44577899999876544
No 295
>KOG0904|consensus
Probab=66.69 E-value=23 Score=37.43 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=49.9
Q ss_pred cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEE--EeCCCCCCCe-eecccccCCCCceeccEEEEEcccCccc-ccEEEE
Q psy12482 120 KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVY--LLPDKSKAGK-RKTRVKKHTLSPVFDEVLKFQLTLEDLE-CRTLWL 195 (419)
Q Consensus 120 ~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~--l~~~~~~~~~-~kT~~~~~t~nP~wne~f~f~v~~~~l~-~~~l~i 195 (419)
-..-++|.++.+.++... ...|-+|.|. +..+....-+ ..|..+..+.+|.||+...|+|...++. .+.|.|
T Consensus 341 ~~~~frI~l~~is~~n~~----~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~ 416 (1076)
T KOG0904|consen 341 LDRPFRIKLVGISKVNLP----ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCL 416 (1076)
T ss_pred CCCceEEEEeeccccCCC----cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhhee
Confidence 356688888888766433 2334555544 4444433322 4555666688999999999998887774 456777
Q ss_pred EEEec
Q psy12482 196 SVWHS 200 (419)
Q Consensus 196 ~v~d~ 200 (419)
.||.-
T Consensus 417 ~i~~v 421 (1076)
T KOG0904|consen 417 AIYAV 421 (1076)
T ss_pred eeeEe
Confidence 77754
No 296
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=62.11 E-value=86 Score=29.46 Aligned_cols=110 Identities=7% Similarity=0.083 Sum_probs=66.6
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCc--eeccEEEEEcccCcccccEEEEEEE
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSP--VFDEVLKFQLTLEDLECRTLWLSVW 198 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP--~wne~f~f~v~~~~l~~~~l~i~v~ 198 (419)
.-.|-|.|.+..++.. ....|+.+..+ ....+|..+.-+..- .-.+.....|.. .+.+|++.||
T Consensus 57 kF~LLVeI~EI~~i~k------~khiyIef~~G-----r~d~TT~~IpTsKK~RI~IqqRV~IkIRQ---cDnTLkI~lf 122 (508)
T PTZ00447 57 TFYLLVKINEIFNINK------YKHIYIIFSTD-----KYDFTTDEIPTNKKNRIHIDQRVDIKIRQ---CDETLRVDLF 122 (508)
T ss_pred eeeEEEEehhhhcccc------ceeEEEEEEcC-----ceEEEccccccCcCceEEEeeeeeeeeee---cCceEEEEEE
Confidence 4457777777665542 34568888775 234455333322111 122332233322 4568999999
Q ss_pred ecCCCCCCceeEEEEEeCccc--ccCCCCCceecCccccchhhhhhccccceEEEE
Q psy12482 199 HSDMFGRNDFLGEVMMSLENK--VFDDPSPKCYPLQERSEILDELICSKGELIIGL 252 (419)
Q Consensus 199 d~~~~~~~~~iG~~~~~l~~~--~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l 252 (419)
-.... +..-||.+.+++..- ...-|...||.+.+.+.. .+.|.+|+
T Consensus 123 KKkLv-kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~-------~cRIqLSF 170 (508)
T PTZ00447 123 TTKLT-KKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQE-------ICKVQMSF 170 (508)
T ss_pred ecccc-ceeEEEEEEecccHHHHhccCCccceEEEecCCce-------eeeEEEEe
Confidence 87755 678899999998752 344578999999765432 36777765
No 297
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=61.91 E-value=80 Score=25.15 Aligned_cols=92 Identities=9% Similarity=0.065 Sum_probs=49.0
Q ss_pred CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCcee-ccEEEEEcccCcccccEEEEEEEec
Q psy12482 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVF-DEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
..|.+.=+.-..+|..+.. +.+.||++|+-.... ...+...... .... ...+.+.+...-.-.--+.|.+|+.
T Consensus 4 ~~l~L~~I~l~~iP~f~~~-~gc~p~i~I~~~~~~----v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~ 77 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSG-GGCRPYIEIYNGGKK----VFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHK 77 (134)
T ss_dssp -EEEEEEEEEES-TTSTTS-SCCTEEEEEEETTEE----EEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEEC
T ss_pred eeEEEEEEEEECCCccCCC-CCEEEEEEEECCCcc----EEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeC
Confidence 4455555566677766554 678999999874111 1122222111 1121 2334444433222233688888987
Q ss_pred CC-CCCCceeEEEEEeCccc
Q psy12482 201 DM-FGRNDFLGEVMMSLENK 219 (419)
Q Consensus 201 ~~-~~~~~~iG~~~~~l~~~ 219 (419)
.. ....+.+.++.+.-.-+
T Consensus 78 ~~~~~~~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 78 RSSSMSKEKMFRFWFNTGFI 97 (134)
T ss_dssp ETTECCCEEEEEEEEEGGGS
T ss_pred CCcccccCeEEEEEEeeeee
Confidence 63 34567788887765543
No 298
>KOG0906|consensus
Probab=60.38 E-value=16 Score=37.08 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=51.1
Q ss_pred CCCcEEEEEEeCCCC-CcceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482 293 TVDAFCKAYLLPDKG-RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWDHDRLTSNEFLGGIRLNLGH 369 (419)
Q Consensus 293 ~~dpyV~v~~~~~~~-~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d~~~~~~~~~lG~~~i~l~~ 369 (419)
.+|-||+..+...+. ...--+|+.+.....=.|||-+.++ +...++. +..+.|++||.+......++|..++.+..
T Consensus 46 ~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlp-vky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 46 SSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLP-VKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhheeeeeccCCcccCCccccccccCCccchhhhhccc-cccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 567777766554322 1222334433332323699999997 7777775 56699999998877778899999998743
No 299
>KOG0694|consensus
Probab=60.19 E-value=2.7 Score=42.71 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=57.0
Q ss_pred CCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCccccc
Q psy12482 142 QRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF 221 (419)
Q Consensus 142 ~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~ 221 (419)
...+||+.|.+.... ...+.+.+.+..|.|+++|...+.. ...+.|.|+.......+.+...+.+-.+++..
T Consensus 26 ~al~~y~~v~vk~~~----~~~~~~~~~~~~~~~~~~F~~~v~~----~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~ 97 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQ----GAENMTKVELRIPELRETFHVEVVA----GGAKNIIVLLKSPDPKALSEAQLSLQEESQKL 97 (694)
T ss_pred hhhhhhheeccceee----cccccCCCCCCCchhhhheeeeeec----CCceEEEEEecCCcchhhHHHhHHHHHHHHHH
Confidence 346889888874211 1244456789999999999888654 44788889886544333333333333333322
Q ss_pred -CCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482 222 -DDPSPKCYPLQERSEILDELICSKGELIIGLKFVP 256 (419)
Q Consensus 222 -~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~ 256 (419)
......|..+.+. |.+...+.+..
T Consensus 98 ~~~~~~~w~~~~~~-----------g~~~~~~~~~~ 122 (694)
T KOG0694|consen 98 LALEQRLWVLIEEL-----------GTLLKPAALTG 122 (694)
T ss_pred Hhhhhhhccccccc-----------cceeeeecccC
Confidence 2234567775543 66666665543
No 300
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=60.00 E-value=51 Score=27.72 Aligned_cols=68 Identities=18% Similarity=0.315 Sum_probs=46.1
Q ss_pred CCcEEEEEEeCCCCCCCeeecccccC--CCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCccc
Q psy12482 144 SDPYVKVYLLPDKSKAGKRKTRVKKH--TLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219 (419)
Q Consensus 144 ~dpyv~v~l~~~~~~~~~~kT~~~~~--t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~ 219 (419)
..-|++|.+.. ....+|+...- ...-.|||.|.+.+.. - -..|.+.||.... ..+..|+++.+++-..
T Consensus 37 ~~~~ikl~~N~----k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~--Pesi~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 37 TRYYIKLFFND----KEVSRTRSRPLWSDFRVHFNEIFNVQITR-W--PESIKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred eeEEEEEEECC----EEEEeeeeEecCCCeEEeccCEEEEEEec-C--CCEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 45678888742 22445554432 2235678988888744 2 2389999999887 5789999999997653
No 301
>KOG1329|consensus
Probab=58.69 E-value=4.5 Score=42.46 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=55.1
Q ss_pred CCCcEEEEEEeCCCCCcceeecccccCC-CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482 293 TVDAFCKAYLLPDKGRASKHKTGIIKRS-TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK 371 (419)
Q Consensus 293 ~~dpyV~v~~~~~~~~~~~~~T~~~~~t-~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~ 371 (419)
..++|+.+.+ ......+|...++. .+|.|.+.|.. ..... ...+.+.|-+.+..|-...+|.+.++.-.+.
T Consensus 137 ~~e~Ylt~~l----~~~~~~~t~~~~~f~e~s~~~f~~~~---~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~ 208 (887)
T KOG1329|consen 137 TLENYLTVVL----HKARYRRTHVIYEFLENSRWSFSFDI---GFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYC 208 (887)
T ss_pred hccchheeee----chhhhhchhhhhcccccchhhhhccc---ccccc-ccEEEEeecCCccccceeEEEEeccchhhhh
Confidence 4799999998 45556788888877 69999998865 23233 3559999999888887788999999987743
Q ss_pred c
Q psy12482 372 H 372 (419)
Q Consensus 372 ~ 372 (419)
+
T Consensus 209 ~ 209 (887)
T KOG1329|consen 209 S 209 (887)
T ss_pred c
Confidence 3
No 302
>KOG1329|consensus
Probab=56.32 E-value=18 Score=38.28 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=70.1
Q ss_pred CCcEEEEEEeCCCCCCCeeecccccCC-CCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccC
Q psy12482 144 SDPYVKVYLLPDKSKAGKRKTRVKKHT-LSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD 222 (419)
Q Consensus 144 ~dpyv~v~l~~~~~~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~ 222 (419)
.++|+.+.+.. ....+|....+. .+|.|.+.|...... ....+.+.|-+.+..|-...+|.+.++...+..+
T Consensus 138 ~e~Ylt~~l~~----~~~~~t~~~~~f~e~s~~~f~~~~~~~h---~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 138 LENYLTVVLHK----ARYRRTHVIYEFLENSRWSFSFDIGFAH---KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred ccchheeeech----hhhhchhhhhcccccchhhhhccccccc---cccEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence 48899988852 223466666655 789999876554333 2347888888888776678999999999888777
Q ss_pred CCCCceecCccccchhhhhhccccceEEEEEEeCCCC
Q psy12482 223 DPSPKCYPLQERSEILDELICSKGELIIGLKFVPPED 259 (419)
Q Consensus 223 ~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~ 259 (419)
.....|+++........ +..-.+.+.+.|.+...
T Consensus 211 ~~~~~~~~Il~~d~~~~---~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 211 HRIGGWFPILDNDGKPH---QKGSNESLRLGFTPMEK 244 (887)
T ss_pred ccccceeeeeccCCccc---cCCcccceEEeeEeech
Confidence 78889998755443211 11123444455555433
No 303
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=54.11 E-value=1e+02 Score=25.28 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=51.3
Q ss_pred ccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeC-CCCCCC-eeeccccc--CCCCceeccEEEEEcccCcc-cccEE
Q psy12482 119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP-DKSKAG-KRKTRVKK--HTLSPVFDEVLKFQLTLEDL-ECRTL 193 (419)
Q Consensus 119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~-~~~~~~-~~kT~~~~--~t~nP~wne~f~f~v~~~~l-~~~~l 193 (419)
+....|.|.|.+.. |.... ...|||+.|++.. +|.-.. .+.|.+.. ...-=.||.......+.+.+ ..+.+
T Consensus 10 ~g~t~l~v~Iekig-lkda~---~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai 85 (147)
T PF14186_consen 10 PGMTYLSVFIEKIG-LKDAS---QYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAI 85 (147)
T ss_dssp TT--EEEEEEEEEE--TTGG---G-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EE
T ss_pred CCCceEEEEEEEEE-ECChH---HccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEE
Confidence 33456778887765 54332 4579999999973 333222 34566542 23334566665555555555 46688
Q ss_pred EEEEEecCCCC-CCceeEEEEEeCcccc
Q psy12482 194 WLSVWHSDMFG-RNDFLGEVMMSLENKV 220 (419)
Q Consensus 194 ~i~v~d~~~~~-~~~~iG~~~~~l~~~~ 220 (419)
.+++.++..-. +-...+-+.+.++++.
T Consensus 86 ~fE~kH~K~kk~k~S~kcw~fme~dei~ 113 (147)
T PF14186_consen 86 FFEFKHYKPKKKKTSTKCWAFMELDEIK 113 (147)
T ss_dssp EEEEEEEETTTTCEEEEEEEEEEGGG--
T ss_pred EEEEEeeeccceeeeeeEEEEEEhhhcc
Confidence 99999875433 2334566777777654
No 304
>KOG4027|consensus
Probab=49.92 E-value=1.4e+02 Score=24.73 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=44.2
Q ss_pred CCCCcEEEEEEeCCCCC--------CCeeecccccCCCCc-eeccEEEEEcccCcc-cccEEEEEEEecCCCCCCceeEE
Q psy12482 142 QRSDPYVKVYLLPDKSK--------AGKRKTRVKKHTLSP-VFDEVLKFQLTLEDL-ECRTLWLSVWHSDMFGRNDFLGE 211 (419)
Q Consensus 142 ~~~dpyv~v~l~~~~~~--------~~~~kT~~~~~t~nP-~wne~f~f~v~~~~l-~~~~l~i~v~d~~~~~~~~~iG~ 211 (419)
..+|.|++.+..-.+.. .-.+-+...++-.|| +||--++..+..... .--.|.+.||..|.+|+|.+.|-
T Consensus 24 e~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GY 103 (187)
T KOG4027|consen 24 EESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGY 103 (187)
T ss_pred CCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeee
Confidence 45678888876422211 111222222344455 455433333222222 22379999999999999999998
Q ss_pred EEEeCcc
Q psy12482 212 VMMSLEN 218 (419)
Q Consensus 212 ~~~~l~~ 218 (419)
..+.+--
T Consensus 104 g~~hiP~ 110 (187)
T KOG4027|consen 104 GMLHIPT 110 (187)
T ss_pred eeEecCc
Confidence 8887653
No 305
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=48.66 E-value=63 Score=26.20 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=52.1
Q ss_pred CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccC-----c----cccccCeEEEEEEECCCCCCCceeEEE
Q psy12482 293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVS-----L----EELSERCLELTVWDHDRLTSNEFLGGI 363 (419)
Q Consensus 293 ~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~-----~----~~~~~~~l~i~V~d~~~~~~~~~lG~~ 363 (419)
+.|.|..|++.+.- ++|.......==.|||.|.|..+- + +.|....+.|+++.+.... ...|+..
T Consensus 19 ~~~vyL~v~~lg~~-----~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~y 92 (140)
T PF14909_consen 19 KGDVYLSVCILGQY-----KRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYY 92 (140)
T ss_pred CCCEEEEEEEcccE-----eecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEE
Confidence 46889999987554 777766544434679999996221 1 2345677999999977655 7889999
Q ss_pred EEeCCCC
Q psy12482 364 RLNLGHG 370 (419)
Q Consensus 364 ~i~l~~~ 370 (419)
+-+++++
T Consensus 93 e~n~rDf 99 (140)
T PF14909_consen 93 EENTRDF 99 (140)
T ss_pred eccccce
Confidence 9988874
No 306
>KOG0906|consensus
Probab=48.66 E-value=27 Score=35.63 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=50.5
Q ss_pred CCCcEEEEEEeCCCCCC-CeeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEecCCCCCCceeEEEEEeCcc
Q psy12482 143 RSDPYVKVYLLPDKSKA-GKRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218 (419)
Q Consensus 143 ~~dpyv~v~l~~~~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~ 218 (419)
.+|.|++..+-..+... -..+|+.+.....=.|||-..+.+.-.+| .++.+.|++|+.+..++..++|...+.+..
T Consensus 46 ~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 46 SSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 45666665554333221 12234433322223599999999887777 467899999999877788899999988754
No 307
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=48.20 E-value=20 Score=34.77 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=32.3
Q ss_pred eeEEEEEeCcc-cccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482 208 FLGEVMMSLEN-KVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP 257 (419)
Q Consensus 208 ~iG~~~~~l~~-~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~ 257 (419)
++|.+.|+++. +..+...+.|+++.+..... ...|.+ +.++|...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~----~~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS----VGEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC----cCcceE-EEEEeeec
Confidence 48999999999 56667889999997755432 223666 68877543
No 308
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=45.07 E-value=1.7e+02 Score=23.80 Aligned_cols=88 Identities=22% Similarity=0.347 Sum_probs=58.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-ccc---------CcccccEE
Q psy12482 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTL---------EDLECRTL 193 (419)
Q Consensus 124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~---------~~l~~~~l 193 (419)
|.|+-+.|-+.--. ..-|.|..|+++ .+.++|+.....--=.|+|.|.|. +-. +.|....+
T Consensus 4 L~i~aVTCPGv~L~----~~~~vyL~v~~l-----g~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~ 74 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC----DKGDVYLSVCIL-----GQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETV 74 (140)
T ss_pred EEEEEEecCCeEeC----CCCCEEEEEEEc-----ccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcE
Confidence 44555555554333 344899999998 446778876554444679999997 211 12355688
Q ss_pred EEEEEecCCCCCCceeEEEEEeCccccc
Q psy12482 194 WLSVWHSDMFGRNDFLGEVMMSLENKVF 221 (419)
Q Consensus 194 ~i~v~d~~~~~~~~~iG~~~~~l~~~~~ 221 (419)
.|+++...... .+.|+...-++.++..
T Consensus 75 ~iELiQl~~~~-g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 75 YIELIQLVPPA-GEILAYYEENTRDFLF 101 (140)
T ss_pred EEEEEEEeCCC-CcEEEEEeccccceEc
Confidence 89988875543 6788888888887643
No 309
>PF15532 Toxin_53: Putative toxin 53
Probab=41.81 E-value=1.4e+02 Score=22.66 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=40.0
Q ss_pred EEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEE-------eCCCCCCCeeecccccCCCCceeccE
Q psy12482 112 EFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYL-------LPDKSKAGKRKTRVKKHTLSPVFDEV 178 (419)
Q Consensus 112 ~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l-------~~~~~~~~~~kT~~~~~t~nP~wne~ 178 (419)
-|...+.......+|+|+.|.--.+...+ +..-+-++|.. .++++ ...+.+.+ ..||-||+.
T Consensus 24 ~~k~kW~~~g~tyrvRvH~~Dp~ap~Gsn-aa~G~IyRI~qg~G~~y~d~~g~---~~h~s~l~-~~sP~yn~~ 92 (102)
T PF15532_consen 24 GFKFKWTDGGKTYRVRVHPADPTAPAGSN-AANGWIYRISQGSGWEYMDPDGK---WHHESVLK-PNSPNYNED 92 (102)
T ss_pred cceEEeecCCceEEEEecCCCCCCCCCCc-ccCCCEEEEEeccCceEecCCCC---eeeccccc-cCCCCcChh
Confidence 34444555567788888888765555555 66678888883 23332 34555554 789999974
No 310
>KOG2419|consensus
Probab=40.42 E-value=7.2 Score=39.32 Aligned_cols=147 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcc----
Q psy12482 143 RSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN---- 218 (419)
Q Consensus 143 ~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~---- 218 (419)
..++++.+.+. .+..+|+.-..+.+|+|||. .|+... +..+..-...++|.+.+++++
T Consensus 304 ~~~~~~itsf~-----~~~frt~~~~~~e~piyNe~-~~E~~~------------Fqsn~~l~~kiv~~~~~~lndS~A~ 365 (975)
T KOG2419|consen 304 KDKWLAITSFG-----EQTFRTEISDDTEKPIYNED-EREDSD------------FQSNRYLGNKIVGYCELDLNDSYAN 365 (975)
T ss_pred CCCchheeecc-----hhhhhhhhhccccccccccc-cccccc------------chhhHHHhhhccccccccccchhhh
Q ss_pred cccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC------
Q psy12482 219 KVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN------ 292 (419)
Q Consensus 219 ~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~------ 292 (419)
+.........+-..+... .+.+.+..-...+|++....
T Consensus 366 f~vq~~~sn~~~~~pE~~------------------------------------~~sfnl~~~a~sn~~a~r~~~S~T~~ 409 (975)
T KOG2419|consen 366 FVVQRAKSNFFISEPEST------------------------------------CKSFNLLDPASSNLPALRNRLSKTNY 409 (975)
T ss_pred hhhhhhhccccccCcccc------------------------------------ceEEEeecCCcccchhhhhccCcccc
Q ss_pred CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEE
Q psy12482 293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWD 350 (419)
Q Consensus 293 ~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d 350 (419)
..||+..+.++..- .++.+.....+|.+++.-.|. +...+..-. +.|.+.+
T Consensus 410 em~~~~~~~vG~~~-----~s~sie~~v~~~~c~~~~~~s-~~d~~~~fk-~sf~~~~ 460 (975)
T KOG2419|consen 410 EMDPFIVIVVGSRF-----FSCSIEDPVETEECFAKRILS-IVDYEEDFK-LSFSEFS 460 (975)
T ss_pred ccCchhHhhhhhHH-----hhhhhhccccchhhhhhhccc-ccccccCce-EeeehHH
No 311
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=37.17 E-value=85 Score=24.31 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=43.1
Q ss_pred cEEEEEcccCccc----ccEEEEEEEecCC---CCCCceeEEEEEeCcccc--------------cCCCCCceecCcccc
Q psy12482 177 EVLKFQLTLEDLE----CRTLWLSVWHSDM---FGRNDFLGEVMMSLENKV--------------FDDPSPKCYPLQERS 235 (419)
Q Consensus 177 e~f~f~v~~~~l~----~~~l~i~v~d~~~---~~~~~~iG~~~~~l~~~~--------------~~~~~~~w~~L~~~~ 235 (419)
.+.-|.+..+.+. ...|.+.++.... .....+||.+.+++.+.. .......-|+|....
T Consensus 11 KScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~ 90 (112)
T PF14924_consen 11 KSCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN 90 (112)
T ss_pred cEEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC
Confidence 4556666665553 5678887766532 345679999999987642 111233456665543
Q ss_pred chhhhhhccccceEEEEEEe
Q psy12482 236 EILDELICSKGELIIGLKFV 255 (419)
Q Consensus 236 ~~~~~~~~~~G~l~l~l~~~ 255 (419)
.. ..|+|.+.++..
T Consensus 91 ~~------~~G~I~l~iRLs 104 (112)
T PF14924_consen 91 GN------PVGEISLYIRLS 104 (112)
T ss_pred Cc------eeeeEEEEEEEe
Confidence 22 348777766553
No 312
>KOG0694|consensus
Probab=35.20 E-value=15 Score=37.57 Aligned_cols=56 Identities=9% Similarity=-0.009 Sum_probs=37.5
Q ss_pred CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCC
Q psy12482 293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSN 357 (419)
Q Consensus 293 ~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~ 357 (419)
..+||+.|.+-.. ....+.+.+.+..|.|||+|... +.. ...+.|.|+.......+
T Consensus 27 al~~y~~v~vk~~----~~~~~~~~~~~~~~~~~~~F~~~-v~~----~~~~~i~v~~~~~~~~~ 82 (694)
T KOG0694|consen 27 ALQPYLAVELKVK----QGAENMTKVELRIPELRETFHVE-VVA----GGAKNIIVLLKSPDPKA 82 (694)
T ss_pred hhhhhheecccee----ecccccCCCCCCCchhhhheeee-eec----CCceEEEEEecCCcchh
Confidence 4688988877322 22344557779999999999885 433 35588999986544333
No 313
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=33.20 E-value=1.6e+02 Score=22.03 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=30.3
Q ss_pred CcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353 (419)
Q Consensus 295 dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~ 353 (419)
+..+.+.+ ....+..|.-+.. .+..|++.|.|. +... ..|.|.||=+|.
T Consensus 10 eV~avLkl----Dn~~VgqT~Wk~~-s~q~WDQ~Fti~-LdRs----RELEI~VywrD~ 58 (98)
T cd08687 10 EVSAVLKL----DNTVVGQTQWKPK-SNQAWDQSFTLE-LERS----RELEIAVYWRDW 58 (98)
T ss_pred ceEEEEEE----cCeEEeecccccc-ccccccceeEEE-eecc----cEEEEEEEEecc
Confidence 44555655 2233455554443 578999999995 4332 558999985543
No 314
>KOG0241|consensus
Probab=30.56 E-value=84 Score=33.85 Aligned_cols=143 Identities=20% Similarity=0.236 Sum_probs=68.8
Q ss_pred CceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCccccc-------cccCCC--CcceE
Q psy12482 206 NDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSA-------KKSSSA--AKGSL 276 (419)
Q Consensus 206 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~-------~~~~~~--~~~~l 276 (419)
+.+||-+.+=|+-+..+-....-.++... .....|.|++.+.-.....+..... .....+ ..-..
T Consensus 770 hnLiGVANvFLE~LF~DvkL~Y~vPIIsQ------qGEVAGRLhVev~Rv~gq~~~~~~ggdev~e~~~~~~~~~~~ltC 843 (1714)
T KOG0241|consen 770 HNLIGVANVFLEVLFHDVKLQYAVPIISQ------QGEVAGRLHVEVMRVTGQVPERVVGGDEVVESSGEIIHRVKKLTC 843 (1714)
T ss_pred ccchhhHHHHHHHHHhhheeccccceecc------cccccceeEEEEEEeccccchhhccccccccCCCccccccceEEE
Confidence 45777776655543222211222233222 1335588998887654433221110 111112 23456
Q ss_pred EEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeeccccc---CCCCC----ccccEEEEc-ccC---ccccccCeEE
Q psy12482 277 HVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIK---RSTSP----QWNHTVVYR-DVS---LEELSERCLE 345 (419)
Q Consensus 277 ~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~---~t~nP----~wne~f~f~-~v~---~~~~~~~~l~ 345 (419)
+|+|.+|.+||..-++ =.||+-++.+..... .--.++- ...++ .|..+-.|. .|. .+.+.+..|-
T Consensus 844 rVkIk~AtGLP~~LSn--FVFCqYtFw~~~E~~--vvaP~vd~ss~~~~~~~~v~FeH~~df~V~vtEeFlE~~~dgALa 919 (1714)
T KOG0241|consen 844 RVKIKEATGLPLNLSN--FVFCQYTFWDQQEST--VVAPVVDPSSQSKDAQYTVIFEHCKDFVVNVTEEFLEHISDGALA 919 (1714)
T ss_pred EEEEeeccCCcccccc--eEEEEeeecccccce--eeeeccccccccCCCCeEEEeecccceEEeehHHHHHHhhcCceE
Confidence 7899999999875443 136776665442111 1111111 11122 333333332 121 1234467799
Q ss_pred EEEEECCCCCCCc
Q psy12482 346 LTVWDHDRLTSNE 358 (419)
Q Consensus 346 i~V~d~~~~~~~~ 358 (419)
|+||-|...+...
T Consensus 920 IEVwGHr~~g~~~ 932 (1714)
T KOG0241|consen 920 IEVWGHRIAGNGS 932 (1714)
T ss_pred EEEeeccccCCCc
Confidence 9999988776433
No 315
>KOG4269|consensus
Probab=29.78 E-value=29 Score=36.69 Aligned_cols=88 Identities=23% Similarity=0.255 Sum_probs=59.8
Q ss_pred CcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482 272 AKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH 351 (419)
Q Consensus 272 ~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~ 351 (419)
..|.+.+.++.|..|.. ..+-||.-.+..-+....+.+|.++.+|..|.||+.+..+ ...- .+..|..+++
T Consensus 757 ~ygflh~~vhsat~lkq----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~---~~~s--qS~r~~~~ek 827 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVP---VIES--QSSRLEKTEK 827 (1112)
T ss_pred cccceeeeecccccccc----ccceeeehhhhhhccccccccceeeecccCCCCChhcccc---hhhc--cccchhhhcc
Confidence 36889999999999865 3567888776544556677899999999999999998764 2222 3344555553
Q ss_pred CC----------CCCCceeEEEEEeCC
Q psy12482 352 DR----------LTSNEFLGGIRLNLG 368 (419)
Q Consensus 352 ~~----------~~~~~~lG~~~i~l~ 368 (419)
+. ...+..+|...+-+.
T Consensus 828 ~~~~~k~~~~~~~~~~~~~~~~~~~l~ 854 (1112)
T KOG4269|consen 828 STPVEKLIDSHSQNSQNEEKRSRMKLD 854 (1112)
T ss_pred cchHHHhhhccchhhcccccccccccC
Confidence 32 234455666665554
No 316
>KOG4269|consensus
Probab=27.92 E-value=30 Score=36.58 Aligned_cols=70 Identities=19% Similarity=0.132 Sum_probs=49.3
Q ss_pred CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200 (419)
Q Consensus 121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~ 200 (419)
.|-+.+.++.|..|. .....||...+..-+....+.+|.++++|.-|.||+.|...+ .+.+ ..++..++.
T Consensus 758 ygflh~~vhsat~lk------qs~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~--~~sq--S~r~~~~ek 827 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLK------QSRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPV--IESQ--SSRLEKTEK 827 (1112)
T ss_pred ccceeeeeccccccc------cccceeeehhhhhhccccccccceeeecccCCCCChhcccch--hhcc--ccchhhhcc
Confidence 467889999998875 344678887776444445678999999999999999766553 2222 555555554
No 317
>KOG4428|consensus
Probab=22.37 E-value=1.3e+02 Score=30.69 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=43.9
Q ss_pred CCCCcEEEEEEeCC-CCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCce
Q psy12482 142 QRSDPYVKVYLLPD-KSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDF 208 (419)
Q Consensus 142 ~~~dpyv~v~l~~~-~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~ 208 (419)
.+++.||.+.+... .-..+...|.++.++.||+|=-...|.-....-+...+.+.|||...-+.+..
T Consensus 49 rK~nt~va~sv~hp~~~~t~~s~tei~egt~~piFL~~~~f~~~~~in~~T~~kl~vydvkD~s~~t~ 116 (813)
T KOG4428|consen 49 RKPNTFVAVSVTHPQAFWTKHSQTEIIEGTNNPIFLSSIAFFQDSLINQMTQVKLSVYDVKDRSQGTM 116 (813)
T ss_pred cCCCceEEEEeeccceeeeeccCceeeeccCCceeeeehhhhhhcchhhhhheeEEEEeecccCCCeE
Confidence 46789999998743 33334457889999999999755555422222245678889998754333333
No 318
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=21.77 E-value=4.9e+02 Score=25.46 Aligned_cols=108 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred ceEEEEEeccccccccCCC----CCCcEEEEEEeCCCCCcceeecccccCCCC-----CccccEEEEcccCccccc----
Q psy12482 274 GSLHVLIKEAKSLCPVKSN----TVDAFCKAYLLPDKGRASKHKTGIIKRSTS-----PQWNHTVVYRDVSLEELS---- 340 (419)
Q Consensus 274 ~~l~v~v~~a~~L~~~~~~----~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n-----P~wne~f~f~~v~~~~~~---- 340 (419)
+.|-+.+-.+-..+..... .+..||+|.| ++-..+...+-.-... ..-+-.-.|. +...++.
T Consensus 12 g~LaLk~P~~~~~~~a~sgvhpssspCfC~IrL----~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~-Ld~s~l~~l~~ 86 (460)
T PF06219_consen 12 GNLALKIPSSSASKSAGSGVHPSSSPCFCEIRL----KGFPSQTAPVPLISSSEPEPPDSHSLAASFH-LDKSDLRRLLA 86 (460)
T ss_pred cceeecCCCCcCCCCCcCccccCCCCeEEEEec----CCCCccceeeeeccCCCCCCCCcCCcceEEe-cCHHHHHHHhC
Q ss_pred -------cCeEEEEEEECCC------CCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeec
Q psy12482 341 -------ERCLELTVWDHDR------LTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPL 407 (419)
Q Consensus 341 -------~~~l~i~V~d~~~------~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l 407 (419)
...|+|.||.... ..+..+||.+.|+|+- .-...+|-....+|..|
T Consensus 87 ~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl---------------------~~ae~kp~v~hnGWi~i 145 (460)
T PF06219_consen 87 KPCFYSPRPCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDL---------------------KWAEGKPVVFHNGWISI 145 (460)
T ss_pred CCccccCCceEEEEEEECCCCCcccccccceEEEEEEEEecc---------------------ccccCCeeEEEccceec
No 319
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=20.44 E-value=1.5e+02 Score=21.04 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=25.8
Q ss_pred CCceecCccccchhhhhhccccceEEEEEEeCCCCCc
Q psy12482 225 SPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSS 261 (419)
Q Consensus 225 ~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~ 261 (419)
...|..|..+... ..+.+|+|.++++....++..
T Consensus 15 ~~KW~~L~dP~D~---~~G~kGYlKv~i~Vlg~GD~~ 48 (72)
T PF08151_consen 15 YRKWALLTDPDDT---SAGVKGYLKVDISVLGPGDEP 48 (72)
T ss_pred EeceEEecCCCCC---ccCCceEEEEEEEEEcCCCcC
Confidence 3569999877654 356789999999998776544
Done!