RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12482
(419 letters)
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 263 bits (675), Expect = 2e-86
Identities = 82/313 (26%), Positives = 151/313 (48%), Gaps = 36/313 (11%)
Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
G++++ L Y+++ L + + Q +L +D SDPYVKV+LLPDK K K +T+V
Sbjct: 4 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKKK--KFETKV 60
Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSP 226
+ TL+PVF+E F++ +L +TL ++V+ D F ++D +GE + + F +
Sbjct: 61 HRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 120
Query: 227 KCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSL 286
+ LQ + E G++ L++VP G L V+I EAK+L
Sbjct: 121 EWRDLQSAEKEEQE---KLGDICFSLRYVP---------------TAGKLTVVILEAKNL 162
Query: 287 CPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLE 345
+ D + K +L+ + R K KT I K + +P +N + + +V E++ + +
Sbjct: 163 KKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF-EVPFEQIQKVQVV 221
Query: 346 LTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCI 405
+TV D+D++ N+ +G + + +S+G E+ W M+ P +
Sbjct: 222 VTVLDYDKIGKNDAIGKVFV-------------GYNSTGAELRHWSDMLANPRRPIAQWH 268
Query: 406 PLRSSLEFSSPIK 418
L+ E + +
Sbjct: 269 TLQVEEEVDAMLA 281
Score = 141 bits (357), Expect = 3e-39
Identities = 57/255 (22%), Positives = 102/255 (40%), Gaps = 45/255 (17%)
Query: 2 LARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQAS-------PDDLSAHS 54
L K K +T+V + TL+PVF+E F V + + D S H
Sbjct: 48 LLPDKKKKFETKVHRKTLNPVFNEQFT------FKVPYSELAGKTLVMAVYDFDRFSKHD 101
Query: 55 EAGLNKSVSSILTDDDVTERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFG 114
G + D + + G++ F
Sbjct: 102 IIG---EFKVPMNTVDFGHVTEEWRDLQSAEKEEQE----------------KLGDICFS 142
Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
L+Y G L + + + K+L +D SDPYVK++L+ + + K+KT +KK+TL+P
Sbjct: 143 LRYVPTAGKLTVVILEAKNLKKMDVGGL-SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 201
Query: 175 FDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE---------NKVFDDP- 224
++E F++ E ++ + ++V D G+ND +G+V + + + +P
Sbjct: 202 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPR 261
Query: 225 SPKC--YPLQERSEI 237
P + LQ E+
Sbjct: 262 RPIAQWHTLQVEEEV 276
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 255 bits (652), Expect = 7e-83
Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 24/294 (8%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G + F L+Y Y L + + Q DL D SDPYVK+YLLPD+ K K +T+V +
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKD-SNGFSDPYVKIYLLPDRKK--KFQTKVHR 63
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
TL+P+F+E +F + L +L R L SV+ D F R+D +G+V++ ++ + P +
Sbjct: 64 KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRP 123
Query: 229 YPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCP 288
++ GEL L ++P G L V I +A +L
Sbjct: 124 LWRDILEGGSEK--ADLGELNFSLCYLPT---------------AGLLTVTIIKASNLKA 166
Query: 289 VKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELT 347
+ D + KA L+ + R K KT I K + +P +N +V+ DV+ E + L +
Sbjct: 167 MDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGLSIA 225
Query: 348 VWDHDRLTSNEFLGGIRLNLGHGKHYSKL--VDWMDSSGKEILLWQQMMERPNF 399
V D+D + NE +G R+ + + + + + K + W Q++E
Sbjct: 226 VVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTL 279
Score = 144 bits (366), Expect = 2e-40
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 2 LARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQAS-------PDDLSAHS 54
L + K +T+V + TL+P+F+E + FSV + Q D S H
Sbjct: 49 LLPDRKKKFQTKVHRKTLNPIFNETFQ------FSVPLAELAQRKLHFSVYDFDRFSRHD 102
Query: 55 EAGLNKSVSSILTDDDVTERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFG 114
G + ++L + P + +L S+ GE+ F
Sbjct: 103 LIG-QVVLDNLLELAEQPPDRPLW-RDILEGGSEKADL----------------GELNFS 144
Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
L Y G L + + + +L +D SDPYVK L+ + + KRKT +KK+TL+P
Sbjct: 145 LCYLPTAGLLTVTIIKASNLKAMDLTGF-SDPYVKASLISEGRRLKKRKTSIKKNTLNPT 203
Query: 175 FDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
++E L F + E +E L ++V D G N+ +G +
Sbjct: 204 YNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGP 245
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 186 bits (473), Expect = 5e-58
Identities = 58/135 (42%), Positives = 85/135 (62%)
Query: 102 YGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGK 161
G++ V G + F L+Y + +L +HVK+C LA D ++RS+PYVK YLLPDKS+ GK
Sbjct: 3 LGNIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGK 62
Query: 162 RKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF 221
RKT +K+ T++P++DE L++++ L RTL SVWH FGRN FLGE + +++
Sbjct: 63 RKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKL 122
Query: 222 DDPSPKCYPLQERSE 236
D C PL +
Sbjct: 123 DKKLDHCLPLHGKIS 137
Score = 114 bits (287), Expect = 1e-30
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 270 SAAKGSLHVLIKEAKSLCP--VKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNH 327
SL V +KE L + + K YLLPDK R K KT I + + +P ++
Sbjct: 19 EQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDE 78
Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
T+ Y ++ L++R L+ +VW H R N FLG + + K KL +
Sbjct: 79 TLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLP 131
Score = 42.7 bits (101), Expect = 3e-05
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQ 44
+S+ GKRKT +K+ T++P++DE L+ + + Q
Sbjct: 57 KSRQGKRKTSIKRDTVNPLYDETLR------YEIPESLLAQ 91
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 167 bits (426), Expect = 4e-51
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 95 SGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP 154
S A G +EF L Y+ L+ + + K L P+D+ +DPYVK++LLP
Sbjct: 2 SEANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSN-GLADPYVKLHLLP 60
Query: 155 DKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVM 213
SK+ K +T+ ++T +PV++E L++ +T ED++ +TL +SV D FG N+F+GE
Sbjct: 61 GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120
Query: 214 MSLENKVFDDPSPKCYPLQ 232
SL+ + L+
Sbjct: 121 FSLKKLKANQRKNFNICLE 139
Score = 113 bits (284), Expect = 3e-30
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
+L I AK L P+ + D + K +LLP +++K +T ++ + +P WN T
Sbjct: 25 DQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNET 84
Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
+ Y ++ E++ + L ++V D D+ NEF+G R +L
Sbjct: 85 LQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK 125
Score = 41.2 bits (97), Expect = 1e-04
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLK 28
SK+ K +T+ ++T +PV++E L+
Sbjct: 62 ASKSNKLRTKTLRNTRNPVWNETLQ 86
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 167 bits (424), Expect = 7e-51
Identities = 45/130 (34%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G+++ ++++ ++ L + V C++L SDPYV++YLLPDK ++G+RKT V K
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFS--EDGSDPYVRMYLLPDKRRSGRRKTHVSK 68
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND--FLGEVMMSLENKVFDDPSP 226
TL+PVFD+ F ++L +++ RTL ++V +S F D LG+V+++L ++
Sbjct: 69 KTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWT 128
Query: 227 KCYPLQERSE 236
+ Y L E S
Sbjct: 129 QWYDLTEDSG 138
Score = 113 bits (285), Expect = 1e-30
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 270 SAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTV 329
S+ + L V++ ++L + D + + YLLPDK R+ + KT + K++ +P ++ +
Sbjct: 20 SSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSF 79
Query: 330 VYRDVSLEELSERCLELTVWDHDRLTSNE--FLGGIRLNLGHGKHYSKLVDWMD 381
+ VSL E+ R L++ V + S + LG + + L + W D
Sbjct: 80 DF-SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYD 132
Score = 42.4 bits (100), Expect = 4e-05
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
+ ++G+RKT V K TL+PVFD+ FSVS +
Sbjct: 56 KRRSGRRKTHVSKKTLNPVFDQSFD------FSVSLPE 87
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 164 bits (417), Expect = 6e-50
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
G V+ + Y + G L I V KDL D +PYVK YLLPD K KRKT++
Sbjct: 7 GSGAVKLSVSY--RNGTLFIMVMHIKDLVTED--GADPNPYVKTYLLPDTHKTSKRKTKI 62
Query: 167 KKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPS 225
+ T +P F+E+L + + E L R L LSV ++ N FLG + + L++ +
Sbjct: 63 SRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKET 122
Query: 226 PKCYPLQERSEI 237
K Y L + +
Sbjct: 123 VKWYQLTAATYL 134
Score = 123 bits (311), Expect = 3e-34
Identities = 37/109 (33%), Positives = 55/109 (50%)
Query: 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
G+L +++ K L + + K YLLPD + SK KT I +++ +P +N +VY
Sbjct: 19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
S E L +R L+L+V + L N FLGGI L L + V W
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQ 127
Score = 43.0 bits (102), Expect = 2e-05
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLK 28
K KRKT++ + T +P F+E+L
Sbjct: 52 THKTSKRKTKISRKTRNPTFNEMLV 76
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 164 bits (418), Expect = 7e-50
Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 92 SVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVY 151
+ G G V G++++ L Y+++ L + + Q +L +D SDPYVKV+
Sbjct: 4 GIGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMG-GTSDPYVKVF 62
Query: 152 LLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGE 211
LLPDK K K +T+V + TL+PVF+E F++ +L +TL ++V+ D F ++D +GE
Sbjct: 63 LLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE 120
Query: 212 VMMSLENKVFDDPSPKCYPLQE 233
+ + F + + LQ
Sbjct: 121 FKVPMNTVDFGHVTEEWRDLQS 142
Score = 109 bits (275), Expect = 5e-29
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
L V I +A L + T D + K +LLPDK + K +T + +++ +P +N
Sbjct: 30 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQ 87
Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
+ V EL + L + V+D DR + ++ +G ++ + +W D
Sbjct: 88 FTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 6 KAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
K K +T+V + TL+PVF+E F V +
Sbjct: 67 KKKKFETKVHRKTLNPVFNEQFT------FKVPYSE 96
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 165 bits (419), Expect = 1e-49
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 87 SDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDP 146
S ++Y R G + +G++ L Y+ +QG L + + +C LA +D SDP
Sbjct: 2 SARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANG-YSDP 60
Query: 147 YVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRN 206
+VK++L PD K K KT++KK TL+P F+E + + DL ++L +SVW D+ N
Sbjct: 61 FVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSN 120
Query: 207 DFLGEVMMSLE---------NKVFDDPSPKC---YPLQERSEILDE 240
D++G + + + + K + LQ + + +
Sbjct: 121 DYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVSSD 166
Score = 120 bits (303), Expect = 8e-33
Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 30/171 (17%)
Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLP 304
G++++ L + +G L V I L + +N D F K +L P
Sbjct: 24 GKILVSLMYST---------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKP 68
Query: 305 DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIR 364
D G+ +KHKT I K++ +P++N Y D+ +L+++ L+++VWD+D SN+++GG +
Sbjct: 69 DMGKKAKHKTQIKKKTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQ 127
Query: 365 LNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLEFSS 415
L + + G+ + W + ++ + +E L++ SS
Sbjct: 128 LGI-------------SAKGERLKHWYECLKNKDKKIERWHQLQNENHVSS 165
Score = 40.8 bits (96), Expect = 2e-04
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
K K KT++KK TL+P F+E + +
Sbjct: 70 MGKKAKHKTQIKKKTLNPEFNEEFF------YDIKHSD 101
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 162 bits (411), Expect = 6e-49
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 97 AGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK 156
G GS G ++F + YN+++ L + + + ++L D SDP+VK+YLLPDK
Sbjct: 1 GSSGSSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFS-GTSDPFVKIYLLPDK 59
Query: 157 SKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
K +T+VK+ L+P ++E F+ E + R L+L V D F RND +GEV +
Sbjct: 60 KH--KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIP 117
Query: 216 LENKVFDDPSPKCYPLQERSE 236
L L+
Sbjct: 118 LNKVDLTQMQTFWKDLKPSGP 138
Score = 110 bits (276), Expect = 3e-29
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
+ + +L V I +A+ L S T D F K YLLPDK K +T + +++ +P WN T
Sbjct: 22 NFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKH--KLETKVKRKNLNPHWNET 79
Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
++ E++ +R L L V D+DR + N+ +G + + L W D
Sbjct: 80 FLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKD 132
Score = 36.5 bits (85), Expect = 0.004
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 6 KAGKRKTRVKKHTLSPVFDEVLK 28
K K +T+VK+ L+P ++E
Sbjct: 59 KKHKLETKVKRKNLNPHWNETFL 81
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 161 bits (409), Expect = 1e-48
Identities = 50/144 (34%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 103 GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-- 160
S + GE++ + Y+ G L IH+ Q ++L P D SDP+VKVYLLP + +
Sbjct: 1 ASHPITGEIQLQINYD--LGNLIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRGQVMVV 57
Query: 161 -------KRKTRVKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEV 212
KR+T+ + +L+P +++ + ++ +++E L +TL ++VW D F NDFLGEV
Sbjct: 58 QNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEV 117
Query: 213 MMSLENKVFDDPSPKCYPLQERSE 236
++ L + D +P+ YPL+E++E
Sbjct: 118 LIDLSSTSHLDNTPRWYPLKEQTE 141
Score = 110 bits (276), Expect = 3e-29
Identities = 43/117 (36%), Positives = 71/117 (60%), Gaps = 10/117 (8%)
Query: 273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRA---------SKHKTGIIKRSTS 322
G+L + I +A++L P +N D F K YLLP +G+ K +T +++S +
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDW 379
P+WN TV+Y+ +S+E+L ++ LE+TVWD+DR +SN+FLG + ++L H W
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRW 133
Score = 37.0 bits (86), Expect = 0.003
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 5 SKAGKRKTRVKKHTLSPVFDEVLK 28
S KR+T+ + +L+P +++ +
Sbjct: 61 SAEYKRRTKYVQKSLNPEWNQTVI 84
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 160 bits (407), Expect = 3e-48
Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 99 EGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK 158
+ G++++ L Y+++ L + + Q +L +D SDPYVKV+LLPDK K
Sbjct: 19 KEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKKK 77
Query: 159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
K +T+V + TL+PVF+E F++ +L +TL ++V+ D F ++D +GE + +
Sbjct: 78 --KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 135
Query: 219 KVFDDPSPKCYPLQE 233
F + + LQ
Sbjct: 136 VDFGHVTEEWRDLQS 150
Score = 109 bits (273), Expect = 1e-28
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
L V I +A L + T D + K +LLPDK + K +T + +++ +P +N
Sbjct: 38 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQ 95
Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
+ V EL + L + V+D DR + ++ +G ++ + +W D
Sbjct: 96 FTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 147
Score = 37.4 bits (87), Expect = 0.002
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 6 KAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
K K +T+V + TL+PVF+E F V +
Sbjct: 75 KKKKFETKVHRKTLNPVFNEQFT------FKVPYSE 104
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 160 bits (406), Expect = 4e-48
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 95 SGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP 154
SG G G S+ +G + + + L + V+ K+L P+D SDPYVK+ L+P
Sbjct: 6 SGGGGGILDSMERRGRIYIQAHID--REVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIP 62
Query: 155 DKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMM 214
D K+KT+ K +L+P ++E +FQL D + R L + +W D+ RNDF+G +
Sbjct: 63 DPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSF 121
Query: 215 SLENKVFDDPSPKCYPLQERSE 236
+ +++ + L + E
Sbjct: 122 GI-SELQKAGVDGWFKLLSQEE 142
Score = 104 bits (260), Expect = 7e-27
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVY 331
+ L V++++AK+L P+ N D + K L+PD SK KT IK S +P+WN T +
Sbjct: 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89
Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
+ E +R L + +WD D + N+F+G + +
Sbjct: 90 -QLK-ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 125
Score = 40.1 bits (94), Expect = 3e-04
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLK 28
K+KT+ K +L+P ++E +
Sbjct: 64 PKSESKQKTKTIKCSLNPEWNETFR 88
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 159 bits (403), Expect = 1e-47
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 100 GRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDT------KRQRSDPYVKVYLL 153
G GS G + F QY+ L + V + +DL P + S+PYVK+ LL
Sbjct: 4 GSSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLL 63
Query: 154 PDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVM 213
PD+ ++T VK+ T PVF+E F++ + + RTL L+V D F R+ +G+V
Sbjct: 64 PDQKN--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121
Query: 214 MSLENKVFDDPSPKCYPLQERS 235
+ L L
Sbjct: 122 VPLCEVDLVKGGHWWKALIPSG 143
Score = 101 bits (254), Expect = 5e-26
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 270 SAAKGSLHVLIKEAKSLCPV--------KSNTVDAFCKAYLLPDKGRASKHKTGIIKRST 321
L V + EA+ L P + + K LLPD+ +TG+ +++
Sbjct: 22 DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKN--SKQTGVKRKTQ 79
Query: 322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
P + + ++ E R L LTV D D+ + + +G + + L W
Sbjct: 80 KPVFEERYTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKA 138
Score = 38.6 bits (90), Expect = 0.001
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 6 KAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQ 44
+ ++T VK+ T PVF+E F + + ++
Sbjct: 66 QKNSKQTGVKRKTQKPVFEERYT------FEIPFLEAQR 98
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 159 bits (403), Expect = 2e-47
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
G+++ G++ K+G LE+ V + + L + PYVKVYLL + + K+KTR+
Sbjct: 17 AMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRI 74
Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS-DMFGRNDFLGEVMMSLENKVFDDPS 225
+ TL P++ + L F + + + L + VW F+G + LE
Sbjct: 75 ARKTLDPLYQQSLVFDESPQG---KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMV 131
Query: 226 PKCYPLQERSEILDE 240
Y L S ++D
Sbjct: 132 IGWYKLFPPSSLVDP 146
Score = 99.9 bits (249), Expect = 4e-25
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 273 KGSLHVLIKEAKSLCPV--KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVV 330
KG L V + A+SL +T + K YLL + +K KT I +++ P + ++V
Sbjct: 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88
Query: 331 YRDVSLEELSERCLELTVW-DHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
+ E + L++ VW D+ R+ F+G ++ L S ++ W
Sbjct: 89 FD----ESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYK 136
Score = 42.1 bits (99), Expect = 7e-05
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLK 28
+ K+KTR+ + TL P++ + L
Sbjct: 64 GACIAKKKTRIARKTLDPLYQQSLV 88
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 156 bits (397), Expect = 7e-47
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
G++ L ++ L + + KDL + + +PYVK+Y LPD+S KR+T+
Sbjct: 6 SGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDG-RPRNPYVKIYFLPDRSDKNKRRTKT 64
Query: 167 KKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMF--GRNDFLGEVMMSLENKVFDD 223
K TL P +++ + + + R L +++W ++FLGE+++ L D
Sbjct: 65 VKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL-ETALLD 123
Query: 224 PSPKCYPLQERSE 236
P Y LQ
Sbjct: 124 DEPHWYKLQTHDS 136
Score = 113 bits (286), Expect = 1e-30
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
L V I AK L + + K Y LPD+ +K +T +K++ P+WN T
Sbjct: 17 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 76
Query: 329 VVYRDVSLEELSERCLELTVWDHDRL--TSNEFLGGIRLNLGH 369
+Y V E ER LE+T+WD R+ +EFLG I + L
Sbjct: 77 FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 119
Score = 41.1 bits (97), Expect = 1e-04
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLK 28
RS KR+T+ K TL P +++
Sbjct: 54 RSDKNKRRTKTVKKTLEPKWNQTFI 78
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 156 bits (396), Expect = 7e-47
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTR 165
+ G++ L ++ L + + KDL + + +PYVK+Y LPD+S KR+T+
Sbjct: 2 FLSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDG-RPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 166 VKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMF--GRNDFLGEVMMSLENKVFD 222
K TL P +++ + + + R L +++W ++FLGE+++ L
Sbjct: 61 TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL-ETALL 119
Query: 223 DPSPKCYPLQ 232
D P Y LQ
Sbjct: 120 DDEPHWYKLQ 129
Score = 114 bits (287), Expect = 6e-31
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
L V I AK L + + K Y LPD+ +K +T +K++ P+WN T
Sbjct: 14 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 73
Query: 329 VVYRDVSLEELSERCLELTVWDHDRL--TSNEFLGGIRLNLGH 369
+Y V E ER LE+T+WD R+ +EFLG I + L
Sbjct: 74 FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 116
Score = 41.1 bits (97), Expect = 9e-05
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLK 28
RS KR+T+ K TL P +++
Sbjct: 51 RSDKNKRRTKTVKKTLEPKWNQTFI 75
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 155 bits (395), Expect = 1e-46
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 5/138 (3%)
Query: 99 EGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK 158
G GS ++ + L Y+ ++ L + + D YV+ +
Sbjct: 3 SGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNH----DGGCDCYVQGSVANRTGS 58
Query: 159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
+ +T +KK L ++E L L E+L TL L++ D F R+ GE+ + L+
Sbjct: 59 V-EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDG 117
Query: 219 KVFDDPSPKCYPLQERSE 236
+ + L+
Sbjct: 118 TSVPLGAAQWGELKTSGP 135
Score = 103 bits (258), Expect = 1e-26
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
K L V EA + D + + + G + +T + KR W +V
Sbjct: 25 KAELFVTRLEAVTSNH--DGGCDCYVQGSVANRTGS-VEAQTALKKRQLHTTWEEGLVL- 80
Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
++ EEL L LT+ DR + + G +RL L W +
Sbjct: 81 PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129
Score = 40.4 bits (95), Expect = 2e-04
Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 1 LLARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
+ R+ + + +T +KK L ++E L ++ ++
Sbjct: 52 VANRTGSVEAQTALKKRQLHTTWEEGLV------LPLAEEE 86
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 153 bits (389), Expect = 1e-45
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 96 GAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPD 155
G G G +GE+ L Y L + V + + L D SDPYVKV L
Sbjct: 4 GISGGGGGIPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSG-LSDPYVKVNLYHA 62
Query: 156 KSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
K + K+KT VKK T + VF+E+ F + E LE ++ V S+ RN+ +G +++
Sbjct: 63 KKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLG 122
Query: 216 L 216
Sbjct: 123 A 123
Score = 117 bits (296), Expect = 6e-32
Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 30/160 (18%)
Query: 244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYL 302
+GEL++ L + +L V++ +A+ L + D + K L
Sbjct: 15 GRGELLVSLCYQS---------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNL 59
Query: 303 LPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGG 362
K R SK KT + K + + +N V+ D+ E L E +E V D +R + NE +G
Sbjct: 60 YHAKKRISKKKTHVKKCTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGR 118
Query: 363 IRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVE 402
+ L + G W+++ + P +
Sbjct: 119 LVLGA-------------TAEGSGGGHWKEICDFPRRQIA 145
Score = 42.3 bits (100), Expect = 5e-05
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQAS 46
+ + K+KT VKK T + VF+E+ F + + ++ S
Sbjct: 63 KKRISKKKTHVKKCTPNAVFNELFV------FDIPCESLEEIS 99
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 152 bits (387), Expect = 2e-45
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
G + F L+YN+++ A +++K+ + L +D + SDPY+K+ +LP+K K KTRV +
Sbjct: 9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRVLR 66
Query: 169 HTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD 223
TL P FDE F + ++ L ++ D F R+D +GEV++ L +
Sbjct: 67 KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122
Score = 116 bits (293), Expect = 1e-31
Identities = 28/131 (21%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 270 SAAKGSLHVLIKEAKSLCPV--KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNH 327
+ + + V IKEA+ L + +S T D + K +LP+K K KT +++++ P ++
Sbjct: 18 NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK--KHKVKTRVLRKTLDPAFDE 75
Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEI 387
T + + ++ E L T+ DR + ++ +G + + L ++ S ++
Sbjct: 76 TFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG----------IELSEGKM 125
Query: 388 LLWQQMMERPN 398
L+ ++++ P+
Sbjct: 126 LMNREIISGPS 136
Score = 36.9 bits (86), Expect = 0.003
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 6 KAGKRKTRVKKHTLSPVFDEVLK 28
K K KTRV + TL P FDE
Sbjct: 56 KKHKVKTRVLRKTLDPAFDETFT 78
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 152 bits (385), Expect = 4e-45
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
+GE+ L YN ++ +++ + ++L +D SDPYVKV+L+ + K+KT K
Sbjct: 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGG-TSDPYVKVWLMYKDKRVEKKKTVTK 60
Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
K L+P+F+E F + E L T+ ++V D RND +G++ +S
Sbjct: 61 KRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSW 109
Score = 128 bits (325), Expect = 2e-36
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 30/167 (17%)
Query: 244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYL 302
S+GEL++ L + P + S+ V I +A++L + T D + K +L
Sbjct: 1 SRGELLLSLCYNP---------------SANSIIVNIIKARNLKAMDIGGTSDPYVKVWL 45
Query: 303 LPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGG 362
+ R K KT KR+ +P +N + + D+ E+L E + +TV D D+L+ N+ +G
Sbjct: 46 MYKDKRVEKKKTVTKKRNLNPIFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIGK 104
Query: 363 IRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRS 409
I L+ S E+ W+ M+ RP V L++
Sbjct: 105 IYLSW-------------KSGPGEVKHWKDMIARPRQPVAQWHQLKA 138
Score = 43.8 bits (104), Expect = 1e-05
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQAS 46
+ K+KT KK L+P+F+E F + +++ ++ +
Sbjct: 49 DKRVEKKKTVTKKRNLNPIFNESFA------FDIPTEKLRETT 85
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 151 bits (383), Expect = 1e-44
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR-KTRVK 167
++ L+Y+ K I + Q +L+ + + Q ++V +LP +TR
Sbjct: 30 TRIQIALKYDEKNKQFAILIIQLSNLSALLQQ-QDQKVNIRVAVLPCSESTTCLFRTRPL 88
Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL-ENKVFDDPSP 226
+ + VF+EV ++ L +TL + V +D + LG +SL E + S
Sbjct: 89 DASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERST 148
Query: 227 KCYPL 231
+ Y L
Sbjct: 149 RWYNL 153
Score = 98.3 bits (245), Expect = 1e-24
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASK-HKTGIIKRSTSPQWNH 327
+LI + +L + + + +LP + +T + S + +N
Sbjct: 39 DEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNE 98
Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEI 387
+S L ++ L + V DR E LGG +++L + SG+
Sbjct: 99 VFWV-SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAE----------VCRSGERS 147
Query: 388 LLWQQMM 394
W ++
Sbjct: 148 TRWYNLL 154
Score = 34.7 bits (80), Expect = 0.021
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 5 SKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQ 44
S +TR + + VF+EV S+S Q
Sbjct: 78 STTCLFRTRPLDASDTLVFNEVFW------VSMSYPALHQ 111
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 150 bits (381), Expect = 1e-44
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
+G + L+ L + V+ K+L P+D SDPYVK+ L+PD K+KT+
Sbjct: 3 KRGRIY--LKAEVTDEKLHVTVRDAKNLIPMD-PNGLSDPYVKLKLIPDPKNESKQKTKT 59
Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSP 226
+ TL+P ++E F+L D + R L + +W D RNDF+G + + +++ P+
Sbjct: 60 IRSTLNPQWNESFTFKLKPSDKD-RRLSVEIWDWDRTTRNDFMGSLSFGV-SELMKMPAS 117
Query: 227 KCYPLQERSE 236
Y L + E
Sbjct: 118 GWYKLLNQEE 127
Score = 104 bits (262), Expect = 2e-27
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 268 SSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWN 326
+ LHV +++AK+L P+ N D + K L+PD SK KT I+ + +PQWN
Sbjct: 10 KAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWN 69
Query: 327 HTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
+ ++ +R L + +WD DR T N+F+G + +
Sbjct: 70 ESFTFKLK--PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSE 110
Score = 39.2 bits (92), Expect = 4e-04
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLK 28
K+KT+ + TL+P ++E
Sbjct: 49 PKNESKQKTKTIRSTLNPQWNESFT 73
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 150 bits (381), Expect = 2e-44
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 101 RYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG 160
+ S V+G + L + + L +H+ + K L DPYVK+ L+P+ S+
Sbjct: 6 HHHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ--PGTCDPYVKISLIPEDSRLR 63
Query: 161 KRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGR-NDFLGEVMMSLENK 219
+KT+ P F E F + ED + + L ++VW+ R + +G + +++
Sbjct: 64 HQKTQTVPDCRDPAFHEHFFFPVQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
Query: 220 VFDD-PSPKCYPLQERSE 236
+ D Y L
Sbjct: 123 LTPDKEISGWYYLLGEHL 140
Score = 103 bits (260), Expect = 9e-27
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 270 SAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTV 329
A L + I E K L + T D + K L+P+ R KT + P ++
Sbjct: 23 DAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHF 82
Query: 330 VYRDVSLEELSERCLELTVWDHDRLT-SNEFLGGIRLNLGHGKHYSKLVD-WMD 381
+ V E+ +R L +TVW+ + + +G + + K + W
Sbjct: 83 FF-PVQEEDDQKR-LLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYY 134
Score = 40.4 bits (95), Expect = 2e-04
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQ 44
S+ +KT+ P F E F V + D++
Sbjct: 59 DSRLRHQKTQTVPDCRDPAFHEHFF------FPVQEEDDQK 93
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 150 bits (381), Expect = 3e-44
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 100 GRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA 159
G G + G++ F L+Y G L + + + K+L +D SDPYVK++L+ + +
Sbjct: 3 GGGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGG-LSDPYVKIHLMQNGKRL 61
Query: 160 GKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE-- 217
K+KT +KK+TL+P ++E F++ E ++ + ++V D G+ND +G+V +
Sbjct: 62 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121
Query: 218 -------NKVFDDP-SPKC--YPLQERSEILDELICSK 245
+ + +P P + LQ E+ L K
Sbjct: 122 GAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAVKK 159
Score = 115 bits (291), Expect = 4e-31
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLP 304
G++ L++VP G L V+I EAK+L + D + K +L+
Sbjct: 12 GDICFSLRYVP---------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ 56
Query: 305 DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIR 364
+ R K KT I K + +P +N + + +V E++ + + +TV D+D++ N+ +G +
Sbjct: 57 NGKRLKKKKTTIKKNTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 115
Query: 365 LNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLEFSSPIK 418
+ +S+G E+ W M+ P + L+ E + +
Sbjct: 116 VG-------------YNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLA 156
Score = 40.9 bits (96), Expect = 2e-04
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQAS 46
+ K+KT +KK+TL+P ++E F V +Q ++
Sbjct: 58 GKRLKKKKTTIKKNTLNPYYNESFS------FEVPFEQIQKVQ 94
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 123 bits (311), Expect = 3e-34
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 16/156 (10%)
Query: 109 GEVEFGLQYNYKQ-GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPD-KSKAGKRKTRV 166
FGL + + + + V LA D SDPYV+V L +T+
Sbjct: 6 AVEVFGLLEDEENSRIVRVRVIAGIGLAKKD-ILGASDPYVRVTLYDPMNGVLTSVQTKT 64
Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPS- 225
K +L+P ++E + F++ + L V+ + R+DFLG+V + L ++P
Sbjct: 65 IKKSLNPKWNEEILFRVHPQQ---HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRL 121
Query: 226 -----PKCYPLQERSEILDELICSKGELIIGLKFVP 256
K + L RS KG L + + ++P
Sbjct: 122 ERPYTFKDFVLHPRSHKSRV----KGYLRLKMTYLP 153
Score = 73.6 bits (181), Expect = 6e-16
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPD-KGRASKHKTGIIKRSTSPQWNHTVVY 331
+ V + L D + + L G + +T IK+S +P+WN +++
Sbjct: 20 RIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF 79
Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
R + L V+D +RLT ++FLG + + L
Sbjct: 80 RVHP----QQHRLLFEVFDENRLTRDDFLGQVDVPL 111
Score = 34.7 bits (80), Expect = 0.022
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDK 43
+T+ K +L+P ++E + F V QQ +
Sbjct: 54 NGVLTSVQTKTIKKSLNPKWNEEIL------FRVHPQQHR 87
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 113 bits (284), Expect = 4e-30
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 15/179 (8%)
Query: 117 YNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK-SKAGKRKTRVKKHTLSPVF 175
+N + + V LA D SDPYV+V L +T+ K +L+P +
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKD-ILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKW 61
Query: 176 DEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSP------KCY 229
+E + F++ + + V+ + R+DFLG+V + L ++P K +
Sbjct: 62 NEEILFRVLPQR---HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118
Query: 230 PLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCP 288
L RS KG L + + ++P S +A ++ G + + +A + P
Sbjct: 119 VLHPRSHKSR----VKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHLP 173
Score = 68.8 bits (168), Expect = 5e-14
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 274 GSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDK-GRASKHKTGIIKRSTSPQWNHTVVY 331
+ V + L D + + L G + +T IK+S +P+WN +++
Sbjct: 8 RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67
Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
R + + V+D +RLT ++FLG + + L
Sbjct: 68 RVLP----QRHRILFEVFDENRLTRDDFLGQVDVPLYP 101
Score = 40.6 bits (95), Expect = 3e-04
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 34/160 (21%)
Query: 4 RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ--------DKQASPDDLSAHSE 55
+T+ K +L+P ++E + F V Q+ D+ + L+
Sbjct: 42 SGILTSVQTKTIKKSLNPKWNEEIL------FRVLPQRHRILFEVFDE----NRLTRDDF 91
Query: 56 AGLNK-SVSSILTDDDVTERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFG 114
G + + T++ ER +L RS VKG +
Sbjct: 92 LGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR---------------VKGYLRLK 136
Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP 154
+ Y K G+ + + Q ++L P + D + P
Sbjct: 137 MTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHLPHPP 176
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 102 bits (257), Expect = 1e-26
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 10/142 (7%)
Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
G L + V+ ++ + DP V V +K +KT+ + L+PV++E+L+
Sbjct: 6 SGMLRVIVESASNIPKTKF--GKPDPIVSVIFKDEK-----KKTKKVDNELNPVWNEILE 58
Query: 181 FQLT-LEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILD 239
F L + +L + V + G+N +G ++L++ D Y L
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKG 118
Query: 240 ELICSKGELIIGLKFVPPEDSS 261
+ + + + + PP S
Sbjct: 119 QDT--GATIDLVIGYDPPSGPS 138
Score = 75.1 bits (185), Expect = 1e-16
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
Query: 269 SSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
SS + G L V+++ A ++ K D +K KT + +P WN
Sbjct: 2 SSGSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEK-----KKTKKVDNELNPVWNEI 56
Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
+ + + L + V D + + N+ +G + L
Sbjct: 57 LEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVAL 95
Score = 34.7 bits (80), Expect = 0.016
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 9 KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASP 47
K+KT+ + L+PV++E+L +F + +S
Sbjct: 39 KKKTKKVDNELNPVWNEIL------EFDLRGIPLDFSSS 71
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 92.8 bits (231), Expect = 6e-23
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 16/142 (11%)
Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
G LE+ + K L D DPYV++ ++ + +P ++E
Sbjct: 9 HGTLEVVLVSAKGLEDADFLN-NMDPYVQLTCRTQD----QKSNVAEGMGTTPEWNE--T 61
Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC-YPLQERSEILD 239
F T+ + L ++ D+ +D +GE + LE + P Y + + E
Sbjct: 62 FIFTVSEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEE--- 117
Query: 240 ELICSKGELIIGLKFVPPEDSS 261
KGE+ + L F P SS
Sbjct: 118 ----YKGEIWVALSFKPSGPSS 135
Score = 60.1 bits (146), Expect = 3e-11
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 265 AKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323
SS G+L V++ AK L +D + + + T+P
Sbjct: 1 GSSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD----QKSNVAEGMGTTP 56
Query: 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
+WN T ++ L+ ++D D T ++ +G + L
Sbjct: 57 EWNETFIFTVSE----GTTELKAKIFDKDVGTEDDAVGEATIPLEP 98
Score = 29.2 bits (66), Expect = 1.2
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 9 KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDK 43
++ + +P ++E F+VS +
Sbjct: 44 QKSNVAEGMGTTPEWNETFI------FTVSEGTTE 72
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 90.8 bits (226), Expect = 3e-22
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
G L++ V + DL D +SDP+ + L D+ +T L+P +++V
Sbjct: 12 VGILQVKVLKAADLLAAD-FSGKSDPFCLLELGNDR-----LQTHTVYKNLNPEWNKV-- 63
Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDE 240
F ++D+ L ++V+ D DFLG+V + L + D P CY L+ + L++
Sbjct: 64 FTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLS--IRDGQPNCYVLKNKD--LEQ 118
Query: 241 LICSKGELIIGLKFV 255
KG + + + +
Sbjct: 119 A--FKGVIYLEMDLI 131
Score = 64.2 bits (157), Expect = 8e-13
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 263 SSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST 321
SS G L V + +A L + D FC L D+ +T + ++
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR-----LQTHTVYKNL 56
Query: 322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
+P+WN + + + LE+TV+D D +FLG + + L
Sbjct: 57 NPEWNKVFTFPIKDIHD----VLEVTVFDEDGDKPPDFLGKVAIPL 98
Score = 31.1 bits (71), Expect = 0.24
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 9 KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDK 43
+ +T L+P +++V F + D
Sbjct: 46 RLQTHTVYKNLNPEWNKVF------TFPIKDIHDV 74
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 84.7 bits (210), Expect = 4e-20
Identities = 17/120 (14%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 124 LEIHVKQCKDLAPVDTKRQ--RSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
+ V + + DPYV++++ +++TR + ++PV++E F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDS--RKRTRHFNNDINPVWNET--F 60
Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL 241
+ L+ + L +++ ++ + ++ LG ++ + + + + +E++ E+
Sbjct: 61 EFILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEM 119
Score = 58.1 bits (141), Expect = 8e-11
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 276 LHVLIKEAKSLCPVKSN----TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVY 331
V++ A + T D + + ++ S+ +T +P WN T +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEF 62
Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLG 368
L+ E LE+T+ D + + +E LG +
Sbjct: 63 ---ILDPNQENVLEITLMDANYVM-DETLGTATFTVS 95
Score = 30.4 bits (69), Expect = 0.44
Identities = 7/43 (16%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 2 LARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQ 44
++ + +++TR + ++PV++E + F + Q+
Sbjct: 35 ISTTPDSRKRTRHFNNDINPVWNETFE------FILDPNQENV 71
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 84.0 bits (208), Expect = 9e-20
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
+ + V K+LA D R DP+ K+ + T K+TL P +++ +
Sbjct: 7 IRLTVLCAKNLAKKDFFRL-PDPFAKIVVDGSGQC---HSTDTVKNTLDPKWNQHYDLYV 62
Query: 184 TLEDLECRTLWLSVWHSDMFGRND---FLGEVMMSLENKVFDDPSPKCYPLQERSEILDE 240
D ++ +SVW+ + FLG V + + L +
Sbjct: 63 GKTD----SITISVWNHKKIHKKQGAGFLGCVRLLSNA-ISRLKDTGYQRLDLCKLNPSD 117
Query: 241 LICSKGELIIGLKF 254
+G++++ L+
Sbjct: 118 TDAVRGQIVVSLQT 131
Score = 58.5 bits (142), Expect = 8e-11
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDV 334
+ + + AK+L D F K + H T +K + P+WN
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG---QCHSTDTVKNTLDPKWNQHYD---- 59
Query: 335 SLEELSERCLELTVWDHDRLTSNE---FLGGIRLNLGH 369
L + ++VW+H ++ + FLG +RL
Sbjct: 60 -LYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNA 96
Score = 30.4 bits (69), Expect = 0.41
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 9 KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
T K+TL P +++ D V
Sbjct: 40 CHSTDTVKNTLDPKWNQHY------DLYVGKTD 66
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 81.9 bits (202), Expect = 1e-18
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 21/130 (16%)
Query: 122 GALEIHVKQCKDLAPVDTKR---------QRSDPYVKVYLLPDKSKAGKRKTRVKKHTLS 172
G L + + + L P Q DPY+ V + D+ + +T K+ T
Sbjct: 29 GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVR--VGQTSTKQKTNK 84
Query: 173 PVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC---- 228
P ++E +T + L L+V+H G + F+ + + + +
Sbjct: 85 PTYNEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGW 140
Query: 229 YPLQERSEIL 238
L+ ++
Sbjct: 141 VDLEPEGKVF 150
Score = 58.8 bits (142), Expect = 1e-10
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 20/105 (19%)
Query: 274 GSLHVLIKEAKSLCPV-----------KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTS 322
G L V I EA L P +D + + + +T +++
Sbjct: 29 GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV----DQVRVGQTSTKQKTNK 84
Query: 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
P +N +V+ LEL V+ L + F+ L
Sbjct: 85 PTYNEEFCA-NVT----DGGHLELAVFHETPLGYDHFVANCTLQF 124
Score = 28.0 bits (62), Expect = 3.3
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 9 KRKTRVKKHTLSPVFDEV 26
+T K+ T P ++E
Sbjct: 73 VGQTSTKQKTNKPTYNEE 90
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 80.3 bits (198), Expect = 2e-18
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 20/128 (15%)
Query: 122 GALEIHVKQCKDLAPVDTKR----------QRSDPYVKVYLLPDKSKAGKRKTRVKKHTL 171
G L+I + + L P DPY+ + + D S+ +T K+ T
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSR--IGQTATKQKTN 61
Query: 172 SPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPK--CY 229
SP + + + R + L+V+H G +DF+ + E + +
Sbjct: 62 SPAWHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI 117
Query: 230 PLQERSEI 237
L+ ++
Sbjct: 118 DLEPEGKV 125
Score = 59.9 bits (145), Expect = 3e-11
Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 274 GSLHVLIKEAKSLCP------------VKSNTVDAFCKAYLLPDKGRASKHKTGIIKRST 321
G L + I EA SL P ++ +D + + + +T +++
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTN 61
Query: 322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
SP W+ + + + R +EL V+ + ++F+ +
Sbjct: 62 SPAWHD-----EFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQF 102
Score = 27.9 bits (62), Expect = 3.3
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 14/50 (28%)
Query: 9 KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ--------DKQASPDDL 50
+T K+ T SP + + V + + D DD
Sbjct: 51 IGQTATKQKTNSPAWHDEF------VTDVCNGRKIELAVFHDAPIGYDDF 94
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 79.9 bits (197), Expect = 6e-18
Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 15/151 (9%)
Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
+ L+I V K PYV+V + +KT +T SP + + L
Sbjct: 35 KSQLQITVISAKLKENKKNWF-GPSPYVEVTV-----DGQSKKTEKCNNTNSPKWKQPLT 88
Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP---SPKCYPLQERSEI 237
+T L VW + LG + + + + LQ +
Sbjct: 89 VIVTPVS----KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD- 143
Query: 238 LDELICSKGELIIGLKFVPPEDSSLSSAKKS 268
E + G+L I L + E +++ + +
Sbjct: 144 -KEPTETIGDLSICLDGLQLESEVVTNGETT 173
Score = 64.5 bits (157), Expect = 2e-12
Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 11/119 (9%)
Query: 252 LKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRAS 310
L F DS S K L + + AK K+ + + +
Sbjct: 14 LYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQ 68
Query: 311 KHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
KT + SP+W + V + +S+ L VW H L S+ LG L++
Sbjct: 69 SKKTEKCNNTNSPKWKQPL---TVIVTPVSK--LHFRVWSHQTLKSDVLLGTAALDIYE 122
Score = 31.0 bits (70), Expect = 0.44
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 6/33 (18%)
Query: 9 KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
+KT +T SP + + L V+
Sbjct: 69 SKKTEKCNNTNSPKWKQPL------TVIVTPVS 95
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 77.9 bits (192), Expect = 2e-17
Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 28/145 (19%)
Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
+ I V + L D SDPYV V + K ++T+ L+PV++E
Sbjct: 16 SAKISITVVCAQGLQAKDKTGS-SDPYVTVQVGKTK-----KRTKTIYGNLNPVWEENFH 69
Query: 181 FQLTLEDLECRTLWLSVWHSD-----------MFGRNDFLGEVMMSLENKVFDDPSPKCY 229
F+ + + V D +DFLG+ ++ + Y
Sbjct: 70 FECHNSS---DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT--LSGEMDVWY 124
Query: 230 PLQERSEILDELICSKGELIIGLKF 254
L +R+ + G I L
Sbjct: 125 NLDKRT----DKSAVSGA--IRLHI 143
Score = 59.0 bits (143), Expect = 7e-11
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 21/122 (17%)
Query: 258 EDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGI 316
E + S +S + + + A+ L + D + + +K +T
Sbjct: 1 EFAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQV-----GKTKKRTKT 55
Query: 317 IKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD-----------RLTSNEFLGGIRL 365
I + +P W + S +++ V D D + S++FLG +
Sbjct: 56 IYGNLNPVWEENFHFEC----HNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTII 111
Query: 366 NL 367
+
Sbjct: 112 EV 113
Score = 29.8 bits (67), Expect = 0.99
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 9 KRKTRVKKHTLSPVFDEVL 27
K++T+ L+PV++E
Sbjct: 50 KKRTKTIYGNLNPVWEENF 68
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 65.3 bits (158), Expect = 2e-11
Identities = 15/100 (15%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 121 QGALEIHVKQCKDLAPVDTK--RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEV 178
+ V + + DPYV++++ +++TR + ++PV++E
Sbjct: 17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDS--RKRTRHFNNDINPVWNET 74
Query: 179 LKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
+F L+ + L +++ ++ ++ LG ++ +
Sbjct: 75 FEFI--LDPNQENVLEITLMDANYV-MDETLGTATFTVSS 111
Score = 51.5 bits (122), Expect = 4e-07
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 15/165 (9%)
Query: 252 LKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTV----DAFCKAYLLPDKG 307
+ F+ P + + S V++ A + + D + + ++
Sbjct: 1 MSFIDPYQHIIVEHQYS-----HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD 55
Query: 308 RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
S+ +T +P WN T + L+ E LE+T+ D + + +E LG +
Sbjct: 56 --SRKRTRHFNNDINPVWNETFEF---ILDPNQENVLEITLMDANYV-MDETLGTATFTV 109
Query: 368 GHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLE 412
K K + ++ + +E + E
Sbjct: 110 SSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQE 154
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 61.1 bits (147), Expect = 3e-10
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 277 HVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSL 336
V A+ L + DA+ K + + +TG++ + +P+W + + +V L
Sbjct: 397 VVSNFRAEHLWGDYTTATDAYLKVFF-----GGQEFRTGVVWNNNNPRWTDKMDFENVLL 451
Query: 337 EELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKH 372
L + VWD D ++ LG + G H
Sbjct: 452 STGGP--LRVQVWDADYGWDDDLLGSCDRSPHSGFH 485
Score = 59.1 bits (142), Expect = 1e-09
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 8/108 (7%)
Query: 116 QYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVF 175
L + + + L T +D Y+KV+ + +T V + +P +
Sbjct: 388 PRQRGLAHLVVSNFRAEHLWGDYT--TATDAYLKVFFGGQE-----FRTGVVWNNNNPRW 440
Query: 176 DEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD 223
+ + F+ L L + VW +D +D LG S + +
Sbjct: 441 TDKMDFENVLLSTG-GPLRVQVWDADYGWDDDLLGSCDRSPHSGFHEV 487
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 56.9 bits (137), Expect = 3e-10
Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
L + VK+ K + + + YV + + KS T + P +++ F++
Sbjct: 7 LCVGVKKAKFDGAQE----KFNTYVTLKVQNVKS-----TTIAVR-GSQPSWEQDFMFEI 56
Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN-KVFDDPS-PKCYPLQERSEILDEL 241
DL L + VW+ + + +G V + L + ++ + L ++ + D
Sbjct: 57 NRLDLG---LTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 112
Query: 242 IC 243
IC
Sbjct: 113 IC 114
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 52.3 bits (125), Expect = 2e-08
Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 16/124 (12%)
Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
L + VK+ K + + + YV + + +S T + P +++ F
Sbjct: 14 SLLCVGVKKAKFDGAQE----KFNTYVTLKVQNVES-----TTIAVR-GSQPSWEQDFMF 63
Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN-KVFDDPS-PKCYPLQERSEILD 239
++ DL L + VW+ + + +G V + L + ++ + L ++ + D
Sbjct: 64 EINRLDLG---LTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMAD 119
Query: 240 ELIC 243
IC
Sbjct: 120 SEIC 123
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 50.8 bits (121), Expect = 5e-08
Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 19/140 (13%)
Query: 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV-FDEVLKF 181
AL +H+K +L R R+D KV + +RV ++ FDE ++
Sbjct: 22 ALIVHLKTVSEL------RGRADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRW 70
Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDE- 240
+ L + +++ N +G M L KV ++ ++ ++D+
Sbjct: 71 PVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVL-QKVVEENR-----VEVSDTLIDDN 124
Query: 241 LICSKGELIIGLKFVPPEDS 260
K L + +++ + +
Sbjct: 125 NAIIKTSLSMEVRYQAADGT 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 9e-08
Identities = 63/464 (13%), Positives = 135/464 (29%), Gaps = 143/464 (30%)
Query: 21 PVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNK 80
VF++ +F QD SIL+ +++
Sbjct: 23 SVFEDAFV----DNFDCKDVQD------------------MPKSILSKEEI--------D 52
Query: 81 SLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPV--- 137
++ ++ ++ +V+ VE L+ NYK I + + + +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMTRM 111
Query: 138 -DTKRQR----SDPYVKVYLLPDKSKAGKRKTRVK-----------------KHTLSPVF 175
+R R + + K Y + K + + K ++
Sbjct: 112 YIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-- 168
Query: 176 DEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF----------DDPS 225
+V ++ + WL+ + V+ L+ ++ D S
Sbjct: 169 -DVCLSYKVQCKMDFKIFWLN------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 226 PKCYPLQERSEILDELICSKG---ELIIGL----------KF-------VPPEDSSLSSA 265
+ L L+ SK L++ L F + ++
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 266 KKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAF-----CKAYLLPDKGRASKH---KTGII 317
SAA + L + +L C+ LP + II
Sbjct: 281 ---LSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSII 333
Query: 318 KRSTSP---QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYS 374
S W++ ++ V+ ++L+ +E ++ + L E+ R K +
Sbjct: 334 AESIRDGLATWDN---WKHVNCDKLT-TIIESSL---NVLEPAEY----R------KMFD 376
Query: 375 KLVDWMDSSGKEI------LLWQQMMER-PNFWVESCIPLRSSL 411
+L + S+ I L+W +++ V + SL
Sbjct: 377 RLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLH--KYSL 416
Score = 29.1 bits (64), Expect = 4.0
Identities = 43/282 (15%), Positives = 78/282 (27%), Gaps = 73/282 (25%)
Query: 17 HTLSPVFDEVLKTAGE--RDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTER 74
T +P L E RD + K + D L+ E+ LN L + +
Sbjct: 323 LTTNPR---RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-----LEPAEYRKM 374
Query: 75 ------LPHHNK---SLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGL-QYNYKQGAL 124
P LL S+ V+V ++ L + K+ +
Sbjct: 375 FDRLSVFPPSAHIPTILL--------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 125 EIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDE------- 177
I + ++ + V Y +P L P + +
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKT---------FDSDDLIPPYLDQYFYSHI 477
Query: 178 ---VLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234
+ + R ++L D F LE K+ D +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFL-----DF----RF-------LEQKIRHDSTAWNASGSIL 521
Query: 235 SEILD-----ELICSKG---ELIIG--LKFVPPEDSSLSSAK 266
+ + IC E ++ L F+P + +L +K
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 51.1 bits (121), Expect = 4e-07
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 119 YKQGALEIHVKQCKDLAPVDT-KRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFD 176
++ L + + + L V+ K DP V V + G R+T V + +P +D
Sbjct: 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 553
Query: 177 EVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
+F++T+ DL + V D +NDF+G+ + +
Sbjct: 554 MEFEFEVTVPDLA--LVRFMVEDYDSSSKNDFIGQSTIPWNS 593
Score = 33.3 bits (75), Expect = 0.17
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 290 KSNTVDAFCKAYLLPDKGRASKHKTGIIKRST-SPQWNHTVVYRDVSLEELSERCLELTV 348
K++ VD + +T +I + +P+W+ + +V++ +L+ + V
Sbjct: 516 KNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF-EVTVPDLA--LVRFMV 572
Query: 349 WDHDRLTSNEFLG 361
D+D + N+F+G
Sbjct: 573 EDYDSSSKNDFIG 585
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 48.4 bits (114), Expect = 3e-06
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
L++ + + ++L P + Y ++ L D A + + E +F
Sbjct: 13 LKLWIIEARELPP------KKRYYCELC-LDDMLYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 184 TLEDLECR-TLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYP 230
R L+ + ++G V + + + + YP
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYP 113
Score = 37.3 bits (85), Expect = 0.007
Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 5/106 (4%)
Query: 275 SLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDV 334
L + I EA+ L P K +C+ L A + W + ++
Sbjct: 12 VLKLWIIEAREL-PPKK---RYYCELCLDDML-YARTTSKPRSASGDTVFWGEHFEFNNL 66
Query: 335 SLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWM 380
L + ++G + + + W
Sbjct: 67 PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWY 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 3e-06
Identities = 59/372 (15%), Positives = 116/372 (31%), Gaps = 103/372 (27%)
Query: 14 VKKHTLSPVFDEVLKTAG--ERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDV 71
+ ++ P+ L + G E V + AS L L + DD+
Sbjct: 1 MDAYSTRPL---TL-SHGSLEHVLLVPTASFFIAS--QLQEQFNKILPEPTEGFAADDE- 53
Query: 72 TERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQC 131
P L+G ++S+ + G++ V+ EF + Y +G +IH
Sbjct: 54 ----PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENCYLEGN-DIHALAA 106
Query: 132 KDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVL--KFQLTLEDLE 189
K L DT ++ +K Y+ ++ ++ KK S +F V QL
Sbjct: 107 KLLQENDTTLVKTKELIKNYI---TARIMAKRPFDKKSN-SALFRAVGEGNAQLVA---- 158
Query: 190 CRTLWLSVWHSDMFG----RNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSK 245
+FG +D+ E L ++ ++ +LI
Sbjct: 159 ------------IFGGQGNTDDYFEE----LR-DLYQTYHV----------LVGDLIKFS 191
Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVL--IKEAKSL--------CPVKS---N 292
E + L + + + +G L++L ++ + P+ S
Sbjct: 192 AETLSELIRTTLDAEKVFT--------QG-LNILEWLENPSNTPDKDYLLSIPI-SCPLI 241
Query: 293 TV------DAFCKAY-LLPDKGR-----ASKHKTGIIK---RSTSPQWNHTVVYRDVSLE 337
V K P + R A+ H G++ + + W S
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE--------SFF 293
Query: 338 ELSERCLELTVW 349
+ + + +
Sbjct: 294 VSVRKAITVLFF 305
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 35.0 bits (80), Expect = 0.011
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
L I + + + + +PY V + + KK T+ P +D F
Sbjct: 12 LRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDST--FDA 69
Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
+ R + + V + D + E + L
Sbjct: 70 HINK--GRVMQIIVKGKN----VDLISETTVELY 97
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 32.6 bits (73), Expect = 0.28
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 144 SDPYVKVYLLP---DKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS 200
YV+V L D + + K ++++PV+ E + E +L ++V
Sbjct: 695 VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 754
Query: 201 DMFGRNDFLGE 211
N FLG
Sbjct: 755 G----NKFLGH 761
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 32.6 bits (73), Expect = 0.31
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 145 DPYVKV---YLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD 201
YV+V L D + + ++ + + P +DE + + + + + V +
Sbjct: 668 SSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN 727
Query: 202 MFGRNDFLGEVMMSLEN 218
F+G +M L+
Sbjct: 728 ----GKFIGHRVMPLDG 740
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 31.5 bits (71), Expect = 0.60
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 263 SSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST 321
A+ ++ G L V + EA L K N + +C+ + + + T I+ +
Sbjct: 376 YQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISM-----GSQSYTTRTIQDTL 430
Query: 322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
+P+WN +++L + L LT++D D+ + ++FLG + +
Sbjct: 431 NPKWNFNC---QFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPV 473
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 29.6 bits (66), Expect = 2.1
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL 354
D + K L+PD SK KT IK S +P+WN T + + + R L + +WD D
Sbjct: 194 DPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRF-QLKESDKDRR-LSVEIWDWDLT 251
Query: 355 TSNEFLGGIRLN 366
+ N+F+G +
Sbjct: 252 SRNDFMGSLSFG 263
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural
genomics center for infectious DI FMN-binding protein;
2.05A {Brucella melitensis biovar abortus} PDB: 3u0i_A
Length = 148
Score = 27.1 bits (60), Expect = 7.4
Identities = 7/59 (11%), Positives = 21/59 (35%)
Query: 92 SVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKV 150
+ ++ +V+V+G + + ++ + I + P TK + +
Sbjct: 71 LFDQIESQTKWRTVLVQGRYREIAREDEEEAIVRIMANEPTWWEPAYTKTITKEGTARA 129
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic
resistance, oxidoreductase; 1.2A {Deinococcus
radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A*
1w3o_A 2x1k_A 2x1j_A
Length = 216
Score = 27.3 bits (60), Expect = 8.0
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 101 RYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVK---VYLLPDKS 157
+Y SV+V G + + + + L +T R S+ +K VY L
Sbjct: 131 QYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDR 190
Query: 158 KAGKRKT 164
+GK
Sbjct: 191 WSGKENW 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.386
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,224,677
Number of extensions: 363237
Number of successful extensions: 875
Number of sequences better than 10.0: 1
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 131
Length of query: 419
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 323
Effective length of database: 4,021,377
Effective search space: 1298904771
Effective search space used: 1298904771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.7 bits)