BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12483
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 23/210 (10%)
Query: 41 ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWR 99
T ++ + L E K++ DA ++ +D +L R+LRA K V A + KWR
Sbjct: 21 GTPGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWR 80
Query: 100 VEYDVASLT-----DQNPIIKSHLEKNKARVLKHRDMNGRPVIY--IPARN-HNANDRDI 151
+Y ++ D+ P+I K + D +GRPV + + A N H N
Sbjct: 81 KDYGTDTILQDFHYDEKPLIA----KFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTS 136
Query: 152 DE-ITKFIVYCLEE-------ACKKCFEEVVDNLCIVFDLKDFGLSCMDYQM--IKNLIW 201
+E + K +V+ E AC + +V+ C + DLK +S M ++ +
Sbjct: 137 EERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASY 196
Query: 202 LLSRHYPERLGVCLILNSPTLFSGCWTVIR 231
+ +YPER+G I+N+P FS + + +
Sbjct: 197 ISQNYYPERMGKFYIINAPFGFSTAFRLFK 226
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 101/217 (46%), Gaps = 27/217 (12%)
Query: 41 ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWR 99
T + +E + L + ++ + + + +D +L R+LRA K ++ + + ++T +WR
Sbjct: 30 GTPGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWR 89
Query: 100 VEYDVASLTDQNPIIKSHLEKNKARVLK-------HRDMNGRPVIYIPARNHNANDRDID 152
EY ++ + K +K + ++ K H D +GRP+ + A N + +
Sbjct: 90 EEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYF--AELGGINLKKMY 147
Query: 153 EITK--------------FIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQM--I 196
+IT F Y + AC + +++ C V DLK LS + + I
Sbjct: 148 KITTEKQMLRNLVKEYELFATYRVP-ACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYI 206
Query: 197 KNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
K++ + +YPER+G I++SP FS + +++ +
Sbjct: 207 KDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPF 243
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 23/215 (10%)
Query: 41 ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWR 99
T + +E + L + ++ + + + +D +L R+LRA K ++ + + ++T +WR
Sbjct: 30 GTPGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWR 89
Query: 100 VEYDVASLTDQNPIIKSHLEKNKARVLK-------HRDMNGRPVIYIPARNHNAND---- 148
EY ++ + K +K + ++ K H D +GRP+ + N
Sbjct: 90 EEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKI 149
Query: 149 -------RD-IDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQM--IKN 198
R+ + E F Y + AC + +++ C V DLK LS + + IK+
Sbjct: 150 TTEKQMLRNLVKEYELFATYRVP-ACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKD 208
Query: 199 LIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
+ + +YPER+G I++SP FS + +++ +
Sbjct: 209 VADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPF 243
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 24/171 (14%)
Query: 77 RYLRAFKQV-DPAFQAILKTNKWRVEYDVASLTDQNP------IIKSHLEKNKARVLKHR 129
RYLRA K V I T WR E+ ++ L +++ ++ E K +L +
Sbjct: 92 RYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYE 151
Query: 130 DMNGRPVIYI-PARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDF-- 186
+ + RP++Y+ P R N + + +V+ LE D+L ++ D KD+
Sbjct: 152 N-DARPILYLKPGRQ---NTKTSHRQVQHLVFMLERVID-FMPAGQDSLALLIDFKDYPD 206
Query: 187 -----GLSCMDYQMI-KNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIR 231
G S + + K ++ +L HYPERLG L+ N P L WT ++
Sbjct: 207 VPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWL---AWTFLK 254
>pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1
pdb|3DLJ|B Chain B, Crystal Structure Of Human Carnosine Dipeptidase 1
Length = 485
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 146 ANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSR 205
A ++D+ KFI+ +EEA EE+V+ KD S +DY +I + +W+ R
Sbjct: 160 ALEQDLPVNIKFIIEGMEEAGSVALEELVEK------EKDRFFSGVDYIVISDNLWISQR 213
>pdb|2BDQ|A Chain A, Crystal Structure Of The Putative Copper Homeostasis
Protein Cutc From Streptococcus Agalactiae, Northeast
Strucural Genomics Target Sar15.
pdb|2BDQ|B Chain B, Crystal Structure Of The Putative Copper Homeostasis
Protein Cutc From Streptococcus Agalactiae, Northeast
Strucural Genomics Target Sar15
Length = 224
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 81 AFKQVDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVI--- 137
A +Q+ PA Q + + +DV +DQ I + R+L H NG P+I
Sbjct: 108 AIEQLLPATQGLPLV--FHXAFDVIPKSDQKKSIDQLVALGFTRILLHGSSNGEPIIENI 165
Query: 138 -YIPARNHNANDR 149
+I A AN+R
Sbjct: 166 KHIKALVEYANNR 178
>pdb|3M4S|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
Length = 148
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 149 RDIDEITKFIV----YCLEEACKKCFEEVVDNLCIVFDLKDFGL 188
+ I+E +K ++ Y LEEA ++VV C++ D+KDFG+
Sbjct: 68 KTIEEQSKQVMTNLKYVLEEA-GSSMDKVVKTTCLLADIKDFGV 110
>pdb|3MQW|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
Length = 148
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 149 RDIDEITKFIV----YCLEEACKKCFEEVVDNLCIVFDLKDFGL 188
+ I+E +K ++ Y LEEA ++VV C++ D+KDFG+
Sbjct: 68 KTIEEQSKQVMTNLKYVLEEA-GSSMDKVVKTTCLLADIKDFGV 110
>pdb|3M1X|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Rhomobohedral Form
Length = 148
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 149 RDIDEITKFIV----YCLEEACKKCFEEVVDNLCIVFDLKDFGL 188
+ I+E +K ++ Y LEEA ++VV C++ D+KDFG+
Sbjct: 68 KTIEEQSKQVMTNLKYVLEEA-GSSMDKVVKTTCLLADIKDFGV 110
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 160 YCLEEACKKCFEEVVDNLCI---VFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLI 216
YC+E CK+ +D L + VF D+G L+W ++ YPER+
Sbjct: 104 YCMEVLCKEMVT-FLDKLGLSQAVFIGHDWG---------GMLVWYMALFYPERVRAVAS 153
Query: 217 LNSPTL 222
LN+P +
Sbjct: 154 LNTPFI 159
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 160 YCLEEACKKCFEEVVDNLCI---VFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLI 216
YC+E CK+ +D L + VF D+G L+W ++ YPER+
Sbjct: 89 YCMEVLCKEMVT-FLDKLGLSQAVFIGHDWG---------GMLVWYMALFYPERVRAVAS 138
Query: 217 LNSPTL 222
LN+P +
Sbjct: 139 LNTPFI 144
>pdb|4H5B|A Chain A, Crystal Structure Of Dr_1245 From Deinococcus
Radiodurans
pdb|4H5B|B Chain B, Crystal Structure Of Dr_1245 From Deinococcus
Radiodurans
Length = 153
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 27 RLLYIGWRIEMGDQATAAEVNE 48
R + +GWR EMGD A VN+
Sbjct: 31 RFIRMGWRFEMGDAAVLVSVND 52
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 160 YCLEEACKKCFEEVVDNLCI---VFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLI 216
YC+E CK+ +D L + VF D+G L+W ++ YPER+
Sbjct: 308 YCMEVLCKEMVT-FLDKLGLSQAVFIGHDWG---------GMLVWYMALFYPERVRAVAS 357
Query: 217 LNSP 220
LN+P
Sbjct: 358 LNTP 361
>pdb|3Q0Y|A Chain A, N-Terminal Domain Of C. Reinhardtii Sas-6 Homolog Bld12p
pdb|3Q0Y|B Chain B, N-Terminal Domain Of C. Reinhardtii Sas-6 Homolog Bld12p
pdb|3Q0Y|C Chain C, N-Terminal Domain Of C. Reinhardtii Sas-6 Homolog Bld12p
pdb|3Q0Y|D Chain D, N-Terminal Domain Of C. Reinhardtii Sas-6 Homolog Bld12p
pdb|3Q0Y|E Chain E, N-Terminal Domain Of C. Reinhardtii Sas-6 Homolog Bld12p
pdb|3Q0Y|F Chain F, N-Terminal Domain Of C. Reinhardtii Sas-6 Homolog Bld12p
Length = 161
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 45 EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDV 104
EV+EEDFQ LK ++ D L++ + A P FQA+L + +
Sbjct: 82 EVSEEDFQSLKNDQGILVDFASFPGKIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKI 141
Query: 105 ASLTD 109
+ D
Sbjct: 142 VEIND 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,312,944
Number of Sequences: 62578
Number of extensions: 296382
Number of successful extensions: 619
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 22
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)