Query psy12483
Match_columns 233
No_of_seqs 135 out of 1460
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 20:30:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1470|consensus 100.0 2.5E-38 5.5E-43 263.9 15.9 180 49-233 27-208 (324)
2 KOG1471|consensus 100.0 4.7E-30 1E-34 220.2 17.7 194 36-233 11-220 (317)
3 PF00650 CRAL_TRIO: CRAL/TRIO 99.9 6.1E-25 1.3E-29 169.9 6.4 115 119-233 4-122 (159)
4 smart00516 SEC14 Domain in hom 99.9 1.3E-21 2.8E-26 151.1 12.0 106 128-233 14-120 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.8 3.6E-19 7.8E-24 136.3 9.7 110 123-233 10-122 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.0 8.3E-10 1.8E-14 84.5 5.6 100 125-231 5-106 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.8 2.2E-08 4.8E-13 63.4 5.9 47 48-95 1-55 (55)
8 KOG4406|consensus 97.6 0.00034 7.4E-09 60.8 8.6 105 121-233 80-188 (467)
9 PF02845 CUE: CUE domain; Int 88.9 2.1 4.5E-05 24.9 5.4 38 48-94 2-40 (42)
10 smart00546 CUE Domain that may 88.0 2.1 4.5E-05 25.0 5.0 37 48-93 3-40 (43)
11 PF14555 UBA_4: UBA-like domai 82.8 5.8 0.00013 23.2 5.2 34 49-92 2-36 (43)
12 KOG1838|consensus 76.6 33 0.00071 30.7 9.9 84 131-228 122-214 (409)
13 PF06972 DUF1296: Protein of u 73.0 15 0.00032 23.3 5.0 25 70-94 19-44 (60)
14 PF00627 UBA: UBA/TS-N domain; 72.4 15 0.00032 20.6 5.1 23 70-92 14-37 (37)
15 KOG1534|consensus 63.9 16 0.00034 29.9 4.7 65 157-224 74-145 (273)
16 PF14213 DUF4325: Domain of un 63.2 20 0.00044 23.5 4.5 51 176-228 17-69 (74)
17 smart00165 UBA Ubiquitin assoc 61.2 26 0.00056 19.3 4.7 23 70-92 13-36 (37)
18 cd00194 UBA Ubiquitin Associat 55.3 35 0.00075 18.9 4.7 23 70-92 13-36 (38)
19 PF03474 DMA: DMRTA motif; In 53.6 29 0.00062 20.1 3.4 22 71-92 16-38 (39)
20 PF11964 SpoIIAA-like: SpoIIAA 50.2 38 0.00083 23.5 4.5 74 149-231 11-85 (109)
21 cd08816 CARD_RIG-I_1 Caspase a 41.9 78 0.0017 21.7 4.6 56 45-100 2-63 (89)
22 PF07308 DUF1456: Protein of u 39.5 43 0.00093 21.9 3.0 29 52-81 33-61 (68)
23 PRK14484 phosphotransferase ma 38.9 1.1E+02 0.0024 22.5 5.5 39 175-224 58-96 (124)
24 PF13082 DUF3931: Protein of u 38.8 36 0.00077 20.9 2.4 20 123-142 39-58 (66)
25 PF04838 Baculo_LEF5: Baculovi 28.5 48 0.001 25.2 2.1 34 197-230 18-53 (159)
26 PF02084 Bindin: Bindin; Inte 28.0 2.7E+02 0.0058 22.8 6.3 42 41-82 96-140 (238)
27 TIGR02364 dha_pts dihydroxyace 27.0 1.3E+02 0.0028 22.0 4.2 47 174-229 59-105 (125)
28 smart00804 TAP_C C-terminal do 25.9 1.9E+02 0.004 18.5 5.8 28 69-96 24-52 (63)
29 cd01886 EF-G Elongation factor 25.9 1.2E+02 0.0027 25.3 4.4 59 41-104 186-245 (270)
30 PF11385 DUF3189: Protein of u 24.0 3.2E+02 0.007 20.7 6.0 53 120-185 49-101 (148)
31 COG5174 TFA2 Transcription ini 22.9 2.5E+02 0.0054 23.2 5.3 29 113-142 177-205 (285)
32 KOG0687|consensus 22.6 48 0.001 28.9 1.3 60 38-97 71-132 (393)
33 PF10281 Ish1: Putative stress 22.5 1.6E+02 0.0034 16.5 4.0 28 52-79 7-34 (38)
34 PF04552 Sigma54_DBD: Sigma-54 21.9 1.7E+02 0.0037 22.5 4.2 46 47-95 101-149 (160)
35 PRK13753 dihydropteroate synth 21.2 4.5E+02 0.0097 22.3 6.8 44 168-212 159-208 (279)
36 TIGR02886 spore_II_AA anti-sig 21.2 2.8E+02 0.0061 18.9 5.0 48 177-228 40-88 (106)
37 PRK11613 folP dihydropteroate 21.1 4.3E+02 0.0093 22.4 6.8 50 162-212 165-217 (282)
38 COG0401 Uncharacterized homolo 21.0 1.3E+02 0.0028 18.8 2.6 25 193-217 29-53 (56)
39 PF08938 HBS1_N: HBS1 N-termin 20.1 60 0.0013 21.7 1.2 25 71-95 45-70 (79)
No 1
>KOG1470|consensus
Probab=100.00 E-value=2.5e-38 Score=263.91 Aligned_cols=180 Identities=31% Similarity=0.575 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCC-ccCCchHHHHHHHhcCceEe
Q psy12483 49 EDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVAS-LTDQNPIIKSHLEKNKARVL 126 (233)
Q Consensus 49 ~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~-l~~~~~~~~~~~~~g~~~~l 126 (233)
+.+.+++..+..... ....+++|.+++||||++| ||++|.+++.+++.||+.+++.. +.++ ++..+++.|..++
T Consensus 27 ~k~~~~~~~~~pl~~-~~~~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~--Ev~~e~~tGK~yi- 102 (324)
T KOG1470|consen 27 DKINSVKKLLGPLTE-KESKWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEAD--EVAAELETGKAYI- 102 (324)
T ss_pred HHHHHHHHhhcchhh-hhHhcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHH--HHHHHhhcCcEEE-
Confidence 345555555533221 1246889999999999999 99999999999999999999987 5554 5999999999876
Q ss_pred cccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCCCHHHHHHHHHHHhch
Q psy12483 127 KHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRH 206 (233)
Q Consensus 127 ~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~~~~~~k~~~~~~q~~ 206 (233)
.|+|++||||+|++++.+.++..+.++..|+++|+||.++..+++ +++++++++|++|+|+++++++.++.++.++|+|
T Consensus 103 ~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~-~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~h 181 (324)
T KOG1470|consen 103 LGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPP-GQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDH 181 (324)
T ss_pred ecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CcceEEEEEecccCcccCCCcHHHHHHHHHHHHh
Confidence 579999999999999888888889999999999999999987754 4778999999999999999999999999999999
Q ss_pred hhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 207 YPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 207 yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
||+||++.+|+|+||+|..+|+++|||
T Consensus 182 YPErLg~a~l~~~P~iF~~~wkiikpf 208 (324)
T KOG1470|consen 182 YPERLGKALLVNAPWIFQPFWKIIKPF 208 (324)
T ss_pred ChHHhhhhhhcCChHHHHHHHHHhhhc
Confidence 999999999999999999999999998
No 2
>KOG1471|consensus
Probab=99.97 E-value=4.7e-30 Score=220.21 Aligned_cols=194 Identities=27% Similarity=0.407 Sum_probs=151.9
Q ss_pred ccCCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCCccCCchHH
Q psy12483 36 EMGDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLTDQNPII 114 (233)
Q Consensus 36 ~~~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~l~~~~~~~ 114 (233)
+..+..+.++.+++.++++| |+...++ .+....||..|+||||+++ |+++|++++.+++.||..+..+.+..+....
T Consensus 11 ~~~~~~~~~~~~~~~i~~lr-~~~~~~~-l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~ 88 (317)
T KOG1471|consen 11 AKEELNEITESEEAVIAQLR-WLLQKPH-LPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEED 88 (317)
T ss_pred cccccCCCcHHHHHHHHHHH-HHhhccC-CCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccc
Confidence 34566788899999999999 6666553 2324788999999999999 9999999999999999999988876542122
Q ss_pred HHHHHhcCceEecccCCCCCeEEEEeCCCcCCC----CCCHHHHHHHHH--------HHHHHHHHhhccCCcccEEEEEe
Q psy12483 115 KSHLEKNKARVLKHRDMNGRPVIYIPARNHNAN----DRDIDEITKFIV--------YCLEEACKKCFEEVVDNLCIVFD 182 (233)
Q Consensus 115 ~~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~----~~~~~~~~r~~~--------~~lE~~~~~~~~~~~~~~v~I~D 182 (233)
.... ...+...+|.|+.|+|+++-+.+..+.. .....+..++.+ ..+|...+. .+.+++|++.|+|
T Consensus 89 ~~~~-~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~-~~~~~~g~~~I~D 166 (317)
T KOG1471|consen 89 DELL-KYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKT-GERQISGIVTIFD 166 (317)
T ss_pred hhhh-hhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcceeEEEEE
Confidence 2222 1234456899999999999998876532 234444444444 444444333 2568999999999
Q ss_pred cCCCCCCCC---CHHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 183 LKDFGLSCM---DYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 183 ~~g~~~~~~---~~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
++|++++|+ .++.++.++.++|++||++++++||||+|++|+++|+++|||
T Consensus 167 l~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpf 220 (317)
T KOG1471|consen 167 LKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPF 220 (317)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhcc
Confidence 999999987 478899999999999999999999999999999999999998
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.91 E-value=6.1e-25 Score=169.93 Aligned_cols=115 Identities=36% Similarity=0.655 Sum_probs=95.7
Q ss_pred HhcCceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhcc-CCcccEEEEEecCCCCCCCCC---HH
Q psy12483 119 EKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFE-EVVDNLCIVFDLKDFGLSCMD---YQ 194 (233)
Q Consensus 119 ~~g~~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~-~~~~~~v~I~D~~g~~~~~~~---~~ 194 (233)
.+++..+++|+|++||||++++++++++...+.+++.+++++.+|.+++.++. .+++|+++|+|++|+++++++ ++
T Consensus 4 ~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~ 83 (159)
T PF00650_consen 4 LKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPIS 83 (159)
T ss_dssp HTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHH
T ss_pred HCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhh
Confidence 34556678999999999999999999988889999999999999999876665 789999999999999999887 89
Q ss_pred HHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 195 MIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 195 ~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
.++.+++++|++||+|++++||+|+|++|+.+|+++|||
T Consensus 84 ~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~ 122 (159)
T PF00650_consen 84 FLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPF 122 (159)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGG
T ss_pred hhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhh
Confidence 999999999999999999999999999999999999987
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.87 E-value=1.3e-21 Score=151.12 Aligned_cols=106 Identities=30% Similarity=0.651 Sum_probs=99.6
Q ss_pred ccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHh-hccCCcccEEEEEecCCCCCCCCCHHHHHHHHHHHhch
Q psy12483 128 HRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKK-CFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRH 206 (233)
Q Consensus 128 g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~-~~~~~~~~~v~I~D~~g~~~~~~~~~~~k~~~~~~q~~ 206 (233)
|+|++||||++++++.+++...+.+++++++++.+|.+... ....+++|+++|+|++|+++++++++.+|.++++++.+
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~lk~~~~~~~~~ 93 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNPDLSVLRKILKILQDH 93 (158)
T ss_pred CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccccHHHHHHHHHHHHHH
Confidence 79999999999999999888899999999999999998764 24678899999999999999999999999999999999
Q ss_pred hhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 207 YPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 207 yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
||++++++||||+|++++++|+++|+|
T Consensus 94 yp~~l~~i~ivn~p~~~~~~~~~~~~~ 120 (158)
T smart00516 94 YPERLGKVLIINPPWFFRVLWKIIKPF 120 (158)
T ss_pred hHHHhCeEEEECCCHHHHHHHHHHHhh
Confidence 999999999999999999999999986
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.80 E-value=3.6e-19 Score=136.30 Aligned_cols=110 Identities=33% Similarity=0.651 Sum_probs=94.6
Q ss_pred ceEecccCCCCCeEEEEeCCCcCC-CCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC--CHHHHHHH
Q psy12483 123 ARVLKHRDMNGRPVIYIPARNHNA-NDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM--DYQMIKNL 199 (233)
Q Consensus 123 ~~~l~g~d~~GrpV~~~~~~~~~~-~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~--~~~~~k~~ 199 (233)
..+..|+|++||||++++++..+. ...+.++++++.++.+|.++... ....+|+++|+|++|++++++ +++.+|++
T Consensus 10 ~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~ 88 (157)
T cd00170 10 VGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQED-DEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI 88 (157)
T ss_pred ccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhh-hhcccceEEEEECCCCChhccchhHHHHHHH
Confidence 344556799999999999985443 33455889999999999987653 334479999999999999998 78899999
Q ss_pred HHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 200 IWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 200 ~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
+++++++||++++++||+|+|++++++|+++|+|
T Consensus 89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~ 122 (157)
T cd00170 89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPF 122 (157)
T ss_pred HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHh
Confidence 9999999999999999999999999999999986
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=98.98 E-value=8.3e-10 Score=84.46 Aligned_cols=100 Identities=25% Similarity=0.396 Sum_probs=67.5
Q ss_pred EecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC-CHHHHHHHHHHH
Q psy12483 125 VLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM-DYQMIKNLIWLL 203 (233)
Q Consensus 125 ~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~-~~~~~k~~~~~~ 203 (233)
+..|+|++||||+++..... ++.. ++.+.+.|++..+.. .....++++|+|+++++..+- +...++.+.+.+
T Consensus 5 ~~gG~d~~g~pV~~~~~~~~-~~~~---~~~~ll~yl~~~l~~---~~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l 77 (149)
T PF13716_consen 5 YPGGRDREGRPVVVFIASRL-PSSD---DLERLLLYLLSTLSE---EVVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLL 77 (149)
T ss_dssp EEEEEBTTS-EEEEEEGGG--C-TT---HHHHHHHHHHHHH-T---TTTTS-EEEEEE-TT--GGG---HHHHHHTTTSS
T ss_pred EecccCCCcCEEEEEECCcC-cchh---hHHHHHHHHHHhhhH---HhcCCCEEEEEEcCCCccccCCchHHHHHHHHHH
Confidence 45799999999999997766 4333 445555555554321 223457999999999988654 688999999999
Q ss_pred hchhhhccCcEEEEcCCcccHHHh-hccc
Q psy12483 204 SRHYPERLGVCLILNSPTLFSGCW-TVIR 231 (233)
Q Consensus 204 q~~yP~rl~~i~ivN~p~~~~~~~-~ivk 231 (233)
...|+..++++||+|++++++.++ .+.+
T Consensus 78 ~~~~~~nl~~vyiv~p~~~~k~~~~~~~~ 106 (149)
T PF13716_consen 78 PRKYKKNLKKVYIVHPNWFLKKILATLLR 106 (149)
T ss_dssp -HHHHHTEEEEEEES--HHHHHHHHHTTT
T ss_pred HHHHhhceEEEEEECCCHHHHHHHHHHhc
Confidence 999999999999999999999888 4433
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.77 E-value=2.2e-08 Score=63.43 Aligned_cols=47 Identities=36% Similarity=0.555 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhh-------hCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 48 EEDFQKLKERMKMI-------SDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 48 ~~~i~~lr~~l~~~-------~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
++++++|++.++.. .. ......+|.+|+|||||++ ||++|.++|.++
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~-~~~~~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWD-DEKEDHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHT-THTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccc-cccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 46899999999874 12 2235779999999999999 999999999875
No 8
>KOG4406|consensus
Probab=97.62 E-value=0.00034 Score=60.84 Aligned_cols=105 Identities=14% Similarity=0.340 Sum_probs=77.3
Q ss_pred cCceEecc-cCCCCCeEEEEeCCCcCCCCCCHHH--HHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCCC-HHHH
Q psy12483 121 NKARVLKH-RDMNGRPVIYIPARNHNANDRDIDE--ITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMD-YQMI 196 (233)
Q Consensus 121 g~~~~l~g-~d~~GrpV~~~~~~~~~~~~~~~~~--~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~~-~~~~ 196 (233)
+...++.+ .|+.||+|+++.+.+..++ ...++ ++++.++.++..++. .++.++=-.|+...+.+ .+++
T Consensus 80 ei~qvi~~~~D~~gr~iivv~a~rlp~~-~eld~~~li~~~v~~id~~Ve~-------DYt~vYfh~gl~s~nkp~l~~l 151 (467)
T KOG4406|consen 80 EILQVIGDAKDKQGRKIIVVYACRLPSS-SELDDIRLISYLVYTIDKYVEN-------DYTLVYFHHGLPSDNKPYLQLL 151 (467)
T ss_pred heeeeccCcccccCCeeEEEEEecCCch-hhhhhHHHHHHHHHHHHHHHhc-------cceeeehhcCCcccccchHHHH
Confidence 44445544 6999999999988776443 24444 788888988887643 15555555567666653 5666
Q ss_pred HHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 197 KNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 197 k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
.....-+-.+|---++.+|+|++.|++.++|+++|||
T Consensus 152 ~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kpl 188 (467)
T KOG4406|consen 152 FDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPL 188 (467)
T ss_pred HHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhh
Confidence 6666666666888899999999999999999999996
No 9
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=88.90 E-value=2.1 Score=24.95 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
.+.+++|++.+. .++...+..-|..++ |++.|...|.+
T Consensus 2 ~~~v~~L~~mFP---------~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFP---------DLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSS---------SS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 356677776652 368899999999999 99999998754
No 10
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=88.03 E-value=2.1 Score=25.04 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL 93 (233)
Q Consensus 48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~ 93 (233)
.+.+++|++++. ..++..+.+.|+.++ |++.|.+.|.
T Consensus 3 ~~~v~~L~~mFP---------~l~~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 3 DEALHDLKDMFP---------NLDEEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred HHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345666666642 368899999999999 9999998875
No 11
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=82.77 E-value=5.8 Score=23.17 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHH
Q psy12483 49 EDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAI 92 (233)
Q Consensus 49 ~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l 92 (233)
+.|.+|..... .++.....||..++ |++.|...+
T Consensus 2 e~i~~F~~iTg----------~~~~~A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 2 EKIAQFMSITG----------ADEDVAIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp HHHHHHHHHH-----------SSHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHHHC----------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45556655542 36789999999999 999998865
No 12
>KOG1838|consensus
Probab=76.60 E-value=33 Score=30.71 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=61.3
Q ss_pred CCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC---------CHHHHHHHHH
Q psy12483 131 MNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM---------DYQMIKNLIW 201 (233)
Q Consensus 131 ~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~---------~~~~~k~~~~ 201 (233)
....|++++-+|.... +.+.++|+++.. +.+ .| =-++|++-+|++-..+ +...++.+++
T Consensus 122 ~~~~P~vvilpGltg~---S~~~YVr~lv~~---a~~---~G---~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~ 189 (409)
T KOG1838|consen 122 DGTDPIVVILPGLTGG---SHESYVRHLVHE---AQR---KG---YRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVN 189 (409)
T ss_pred CCCCcEEEEecCCCCC---ChhHHHHHHHHH---HHh---CC---cEEEEECCCCCCCCccCCCceeecCCHHHHHHHHH
Confidence 3566999999986544 345777776532 221 12 4578899999765544 4678999999
Q ss_pred HHhchhhhccCcEEEEcCCcccHHHhh
Q psy12483 202 LLSRHYPERLGVCLILNSPTLFSGCWT 228 (233)
Q Consensus 202 ~~q~~yP~rl~~i~ivN~p~~~~~~~~ 228 (233)
.+...||.+ +++.+-.+.--+.++|
T Consensus 190 ~i~~~~P~a--~l~avG~S~Gg~iL~n 214 (409)
T KOG1838|consen 190 HIKKRYPQA--PLFAVGFSMGGNILTN 214 (409)
T ss_pred HHHHhCCCC--ceEEEEecchHHHHHH
Confidence 999999998 8888888877777765
No 13
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=72.98 E-value=15 Score=23.26 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.5
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
++|..+..-|+-|+ |..+|.++|..
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 58899999999999 99999999864
No 14
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=72.40 E-value=15 Score=20.56 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=18.3
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAI 92 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l 92 (233)
.+.....+-|+.++ |+++|..-|
T Consensus 14 f~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 14 FSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp S-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHhC
Confidence 35568899999999 999998754
No 15
>KOG1534|consensus
Probab=63.92 E-value=16 Score=29.90 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhh-----ccCCcccEEEEEecCCCC--CCCCCHHHHHHHHHHHhchhhhccCcEEEEcCCcccH
Q psy12483 157 FIVYCLEEACKKC-----FEEVVDNLCIVFDLKDFG--LSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFS 224 (233)
Q Consensus 157 ~~~~~lE~~~~~~-----~~~~~~~~v~I~D~~g~~--~~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~ 224 (233)
.++|+||++.... ..|..++-.+|+|+-|-= +.| ..+++++++-++. .-.++..+|++..+++.+
T Consensus 74 gLv~cmEyl~~NldwL~~~~Gd~eddylifDcPGQIELytH--~pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD 145 (273)
T KOG1534|consen 74 GLVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPGQIELYTH--LPVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVD 145 (273)
T ss_pred cchhHHHHHHHHHHHHHhhccCccCCEEEEeCCCeeEEeec--ChhHHHHHHHHhc-ccCceeEEEEeccchhhh
Confidence 3578888765432 346778899999988642 234 4577888887777 335888888888876544
No 16
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=63.15 E-value=20 Score=23.52 Aligned_cols=51 Identities=12% Similarity=0.095 Sum_probs=35.1
Q ss_pred cEEEEEecCCCCCCCCCHHHHHHHHHHHhchhh--hccCcEEEEcCCcccHHHhh
Q psy12483 176 NLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYP--ERLGVCLILNSPTLFSGCWT 228 (233)
Q Consensus 176 ~~v~I~D~~g~~~~~~~~~~~k~~~~~~q~~yP--~rl~~i~ivN~p~~~~~~~~ 228 (233)
|-.+++|++|+. .+..+++-.++.-+...|+ +.-+++.++|.......+.+
T Consensus 17 ~~~V~lDF~gv~--~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 17 GEKVVLDFEGVE--SITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred CCeEEEECCCcc--cccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 334889999883 3456777777776666666 45678888888766554443
No 17
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=61.24 E-value=26 Score=19.30 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=19.2
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAI 92 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l 92 (233)
.++....+-|+.++ |+++|..-|
T Consensus 13 f~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 13 FSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 46678999999999 999997644
No 18
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=55.27 E-value=35 Score=18.87 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.8
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAI 92 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l 92 (233)
.+.....+-|+.++ |+++|..-|
T Consensus 13 f~~~~~~~AL~~~~~d~~~A~~~L 36 (38)
T cd00194 13 FSREEARKALRATNNNVERAVEWL 36 (38)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 46788899999999 999998765
No 19
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=53.60 E-value=29 Score=20.05 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.0
Q ss_pred ChHHHHHHHHhcC-ChhHHHHHH
Q psy12483 71 NDFSLKRYLRAFK-QVDPAFQAI 92 (233)
Q Consensus 71 ~D~~llRfLr~~~-dv~~A~~~l 92 (233)
....|..-|++|+ ||-+|++.+
T Consensus 16 kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 16 KRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred ChHHHHHHHHHcCCcHHHHHHHh
Confidence 4678889999999 999999865
No 20
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=50.24 E-value=38 Score=23.49 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecC-CCCCCCCCHHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHh
Q psy12483 149 RDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLK-DFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCW 227 (233)
Q Consensus 149 ~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~-g~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~ 227 (233)
.+.+++.++ .-.++..+. ....+.+++|++ ++ ..+++.......++... +...++++-+|-.+.+...+-
T Consensus 11 ~t~ed~~~~-~~~~~~~~~-----~~~~~~ll~d~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~~~~ 81 (109)
T PF11964_consen 11 LTEEDYKEL-LPALEELIA-----DHGKIRLLVDLRRDF--EGWSPEARWEDAKFGLK-HLKHFRRIAVVGDSEWIRMIA 81 (109)
T ss_dssp E-HHHHHHH-HHHHHHHHT-----TSSSEEEEEEEC-CE--EEEHHHHHHHHHHHHCC-CCGGEEEEEEE-SSCCCHHHH
T ss_pred eCHHHHHHH-HHHHHHHHh-----cCCceEEEEEecCcc--CCCCHHHHHHHHHhchh-hhcccCEEEEEECcHHHHHHH
Confidence 366776663 333443322 345688999988 65 23345666666666555 778889999999998888876
Q ss_pred hccc
Q psy12483 228 TVIR 231 (233)
Q Consensus 228 ~ivk 231 (233)
+++.
T Consensus 82 ~~~~ 85 (109)
T PF11964_consen 82 NFFA 85 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 21
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=41.91 E-value=78 Score=21.68 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=36.2
Q ss_pred cccHHHHHHHHHHHHhhhCCC-----CCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHh
Q psy12483 45 EVNEEDFQKLKERMKMISDAD-----PLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRV 100 (233)
Q Consensus 45 ~~~~~~i~~lr~~l~~~~~~~-----~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~ 100 (233)
+++++.++.++..+++...+. ...|.+|....+-+.-.+ -+..|.+.+...+.--.
T Consensus 2 ~~~k~nL~af~~yi~ktl~P~yIl~~m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~l~~le 63 (89)
T cd08816 2 AAEKRNLQRFRDYIKKILRPSYILGFMTTWLEDEEVERILSEEEKGVTSAAQLFLDYVLKLE 63 (89)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCHHHHHHHHHHhccChHHHHHHHHHHHHHHc
Confidence 567889999999999865421 124666665444444445 77778777766655333
No 22
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=39.54 E-value=43 Score=21.85 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhCCCCCCCCChHHHHHHHHh
Q psy12483 52 QKLKERMKMISDADPLQYHNDFSLKRYLRA 81 (233)
Q Consensus 52 ~~lr~~l~~~~~~~~~~~~~D~~llRfLr~ 81 (233)
+++..|+++..+... ..++|..|..||.+
T Consensus 33 ~el~a~lrke~~~~y-~~c~D~~L~~FL~G 61 (68)
T PF07308_consen 33 AELSAWLRKEDEKGY-KECSDQLLRNFLNG 61 (68)
T ss_pred HHHHHHHCCCCCccc-cccChHHHHHHHHH
Confidence 356778876554333 46899999999875
No 23
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=38.92 E-value=1.1e+02 Score=22.46 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=24.9
Q ss_pred ccEEEEEecCCCCCCCCCHHHHHHHHHHHhchhhhccCcEEEEcCCcccH
Q psy12483 175 DNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFS 224 (233)
Q Consensus 175 ~~~v~I~D~~g~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~ 224 (233)
+|++++.|+ |-+..+ ....+..+.. - ++++++++|..=.
T Consensus 58 dGVlVltDL-Gssp~n-----~~~a~e~~~~----~-~~v~~~daPlVEG 96 (124)
T PRK14484 58 DGVLIFFDL-GSAEMN-----AEMAIEMLDG----E-KKIIIIDAPIVEG 96 (124)
T ss_pred CCeEEEEeC-CChHHH-----HHHHHHhcCC----C-CcEEEECCcHHHH
Confidence 899999999 655332 1223333322 2 8999999996533
No 24
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=38.82 E-value=36 Score=20.89 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=16.0
Q ss_pred ceEecccCCCCCeEEEEeCC
Q psy12483 123 ARVLKHRDMNGRPVIYIPAR 142 (233)
Q Consensus 123 ~~~l~g~d~~GrpV~~~~~~ 142 (233)
.++++|.+++||+++...+-
T Consensus 39 sfvlcgetpdgrrlvlthmi 58 (66)
T PF13082_consen 39 SFVLCGETPDGRRLVLTHMI 58 (66)
T ss_pred EEEEEccCCCCcEEEEEEEe
Confidence 34688999999999887653
No 25
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=28.49 E-value=48 Score=25.24 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=30.4
Q ss_pred HHHHHHHhchhhhccC--cEEEEcCCcccHHHhhcc
Q psy12483 197 KNLIWLLSRHYPERLG--VCLILNSPTLFSGCWTVI 230 (233)
Q Consensus 197 k~~~~~~q~~yP~rl~--~i~ivN~p~~~~~~~~iv 230 (233)
+.++..+..+||.-++ ..-++|..-.|..+|+-|
T Consensus 18 ~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv 53 (159)
T PF04838_consen 18 KELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV 53 (159)
T ss_pred HHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc
Confidence 5688899999999999 889999999999999754
No 26
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=27.96 E-value=2.7e+02 Score=22.82 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=26.7
Q ss_pred CCCccccHHHHHHHHHHHHhhhCCCCCCC---CChHHHHHHHHhc
Q psy12483 41 ATAAEVNEEDFQKLKERMKMISDADPLQY---HNDFSLKRYLRAF 82 (233)
Q Consensus 41 ~~~~~~~~~~i~~lr~~l~~~~~~~~~~~---~~D~~llRfLr~~ 82 (233)
.+.+.-+.+.++.+|..|......+|... .|=-.|||-||.+
T Consensus 96 EEetTISAKvm~~ikavLgaTKiDLPVDINDPYDlGLLLRhLRHH 140 (238)
T PF02084_consen 96 EEETTISAKVMEDIKAVLGATKIDLPVDINDPYDLGLLLRHLRHH 140 (238)
T ss_pred CCCccccHHHHHHHHHHhcccccccccccCChhhHHHHHHHHHHH
Confidence 35666677788888888865443344322 2235689999876
No 27
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=26.98 E-value=1.3e+02 Score=22.04 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=30.8
Q ss_pred cccEEEEEecCCCCCCCCCHHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhc
Q psy12483 174 VDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTV 229 (233)
Q Consensus 174 ~~~~v~I~D~~g~~~~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~i 229 (233)
-+|++++.|+ |-+..+. ...+.+++ ++..+.+..+|.|.+...+-..
T Consensus 59 ~dgVlvl~DL-Ggs~~n~-----e~a~~~l~---~~~~~~v~g~nlPlvega~~aa 105 (125)
T TIGR02364 59 ADGVLIFYDL-GSAVMNA-----EMAVELLE---DEDRDKVHLVDAPLVEGAFAAA 105 (125)
T ss_pred CCCEEEEEcC-CCcHhHH-----HHHHHHhc---cccccEEEEechhHHHHHHHHH
Confidence 4699999999 6654321 11333332 3555889999999887776543
No 28
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=25.93 E-value=1.9e+02 Score=18.53 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHhcC-ChhHHHHHHHHHH
Q psy12483 69 YHNDFSLKRYLRAFK-QVDPAFQAILKTN 96 (233)
Q Consensus 69 ~~~D~~llRfLr~~~-dv~~A~~~l~~~~ 96 (233)
..+-.|-.++|..++ |.+.|.+.+.+..
T Consensus 24 gmn~~~s~~cLe~~~Wd~~~Al~~F~~lk 52 (63)
T smart00804 24 GMNAEYSQMCLEDNNWDYERALKNFTELK 52 (63)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 357789999999999 9999999876543
No 29
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=25.89 E-value=1.2e+02 Score=25.30 Aligned_cols=59 Identities=17% Similarity=0.073 Sum_probs=43.0
Q ss_pred CCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCC
Q psy12483 41 ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDV 104 (233)
Q Consensus 41 ~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~ 104 (233)
.+.++...+.+++.|+.|-+.- ...||..+.+||-.-. ..++-.+.|++.+.-++-+|+
T Consensus 186 ~~ip~~~~~~~~~~r~~l~e~v-----ae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~~~~~PV 245 (270)
T cd01886 186 TEIPEDLLEEAEEAREELIETL-----AEFDDELMEKYLEGEEITEEEIKAAIRKGTIANKIVPV 245 (270)
T ss_pred ecCCHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 3556666778888888875432 2469999999999888 888888888877765555443
No 30
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=23.95 E-value=3.2e+02 Score=20.70 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=32.9
Q ss_pred hcCceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCC
Q psy12483 120 KNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKD 185 (233)
Q Consensus 120 ~g~~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g 185 (233)
.|.+++ .|.|..|+.|+.+-.+.. .+-+.+++.-+++.. +...+-++++|...
T Consensus 49 ~G~l~y-~G~De~gn~VY~lG~~~~------~~~~~~al~~l~~i~------~~~~~~i~~vdt~~ 101 (148)
T PF11385_consen 49 IGRLIY-MGTDEYGNEVYILGRKNN------GKIVERALKSLLEIL------GIENEEIILVDTSP 101 (148)
T ss_pred CceEEE-EEEcCCCCEEEEEecCCh------HHHHHHHHHHHHHHh------CCCCCcEEEEeccc
Confidence 355654 599999999988876642 244555554444421 11246678888763
No 31
>COG5174 TFA2 Transcription initiation factor IIE, beta subunit [Transcription]
Probab=22.87 E-value=2.5e+02 Score=23.18 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=18.6
Q ss_pred HHHHHHHhcCceEecccCCCCCeEEEEeCC
Q psy12483 113 IIKSHLEKNKARVLKHRDMNGRPVIYIPAR 142 (233)
Q Consensus 113 ~~~~~~~~g~~~~l~g~d~~GrpV~~~~~~ 142 (233)
.+.+.-+.+.+.++ ..|++|-|+++.+-.
T Consensus 177 ~veeLek~~eIliL-rt~kDg~p~~vW~n~ 205 (285)
T COG5174 177 FVEELEKSNEILIL-RTDKDGSPVVVWNNT 205 (285)
T ss_pred HHHHHhhcCcEEEE-eecCCCCceEEEeCC
Confidence 34333344556555 469999999887643
No 32
>KOG0687|consensus
Probab=22.57 E-value=48 Score=28.88 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=43.5
Q ss_pred CCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC--ChhHHHHHHHHHHH
Q psy12483 38 GDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK--QVDPAFQAILKTNK 97 (233)
Q Consensus 38 ~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~--dv~~A~~~l~~~~~ 97 (233)
+.+++.....++.|++|-+.+++....+-+....+..+-.+...|. |.+.|.+.++.+++
T Consensus 71 ~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 71 DLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344555666778888888887654323344556788888888888 99999999988776
No 33
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.48 E-value=1.6e+02 Score=16.46 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhCCCCCCCCChHHHHHHH
Q psy12483 52 QKLKERMKMISDADPLQYHNDFSLKRYL 79 (233)
Q Consensus 52 ~~lr~~l~~~~~~~~~~~~~D~~llRfL 79 (233)
++|++||+......++...+.+.|+.-.
T Consensus 7 ~~L~~wL~~~gi~~~~~~~~rd~Ll~~~ 34 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSAKTRDELLKLA 34 (38)
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence 4677788776543332222555555443
No 34
>PF04552 Sigma54_DBD: Sigma-54, DNA binding domain; InterPro: IPR007634 This DNA-binding domain is based on peptide fragmentation data. This domain is proximal to DNA in the promoter/holoenzyme complex. Furthermore, this region contains a putative helix-turn-helix motif. At the C terminus, there is a highly conserved region known as the RpoN box and is the signature of the sigma-54 proteins [].; PDB: 2AHQ_A 2O9L_A 2O8K_A.
Probab=21.91 E-value=1.7e+02 Score=22.51 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=26.0
Q ss_pred cHHHH-HHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-Chh-HHHHHHHHH
Q psy12483 47 NEEDF-QKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVD-PAFQAILKT 95 (233)
Q Consensus 47 ~~~~i-~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~-~A~~~l~~~ 95 (233)
..+.| +.+++++++.. +.+.++|.-|..-|...+ ++. .|+.++++.
T Consensus 101 S~~~ik~~i~~lI~~Ed---~~~PlSD~~i~~~L~~~gi~isRRTVaKYR~~ 149 (160)
T PF04552_consen 101 SSEAIKARIKELIEEED---KKKPLSDQEIAELLKEEGIKISRRTVAKYREE 149 (160)
T ss_dssp --TTH-HHHHHHHTTS----TTS---HHHHHHHHTTTTS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 34444 47788887643 335689999999999999 775 566555443
No 35
>PRK13753 dihydropteroate synthase; Provisional
Probab=21.22 E-value=4.5e+02 Score=22.31 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=28.0
Q ss_pred hhccCCcccEEEEEecCCCCC--C-CC--CHHHHHHHHHHHh-chhhhccC
Q psy12483 168 KCFEEVVDNLCIVFDLKDFGL--S-CM--DYQMIKNLIWLLS-RHYPERLG 212 (233)
Q Consensus 168 ~~~~~~~~~~v~I~D~~g~~~--~-~~--~~~~~k~~~~~~q-~~yP~rl~ 212 (233)
.+....+...-+|+|= |+|+ + +. ++.+++.+-.+.+ -.||-.++
T Consensus 159 ~~~~~Gi~~~~IilDP-GiGF~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg 208 (279)
T PRK13753 159 ALRRSGVAADRLILDP-GMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVS 208 (279)
T ss_pred HHHHcCCChhhEEEeC-CCCCCCCCChHHHHHHHHhHHHHHHhCCCceEEE
Confidence 3444557777899997 5665 2 22 4677787766653 67886543
No 36
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=21.17 E-value=2.8e+02 Score=18.89 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=30.4
Q ss_pred EEEEEecCCCCCCCCC-HHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhh
Q psy12483 177 LCIVFDLKDFGLSCMD-YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWT 228 (233)
Q Consensus 177 ~v~I~D~~g~~~~~~~-~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ 228 (233)
-.+|+|+++++.-+.. +..+..+.+-++. .=.+++++|.+.-+.-++.
T Consensus 40 ~~vilDls~v~~iDssgi~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~ 88 (106)
T TIGR02886 40 KHLILNLKNVTFMDSSGLGVILGRYKKIKN----EGGEVIVCNVSPAVKRLFE 88 (106)
T ss_pred CEEEEECCCCcEecchHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHH
Confidence 4799999988865542 4444444444432 3378899998776555543
No 37
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=21.13 E-value=4.3e+02 Score=22.40 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=31.0
Q ss_pred HHHHHHhhccCCcccEEEEEecCCCCCCC-C--CHHHHHHHHHHHhchhhhccC
Q psy12483 162 LEEACKKCFEEVVDNLCIVFDLKDFGLSC-M--DYQMIKNLIWLLSRHYPERLG 212 (233)
Q Consensus 162 lE~~~~~~~~~~~~~~v~I~D~~g~~~~~-~--~~~~~k~~~~~~q~~yP~rl~ 212 (233)
++..+..+....+...-+|+|- |+|++. . ++.+++.+-.+-.-.||-.++
T Consensus 165 l~~~i~~a~~~GI~~~~IilDP-GiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg 217 (282)
T PRK11613 165 FIEQIARCEAAGIAKEKLLLDP-GFGFGKNLSHNYQLLARLAEFHHFNLPLLVG 217 (282)
T ss_pred HHHHHHHHHHcCCChhhEEEeC-CCCcCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3333333344456666899998 577653 2 467777777666667886544
No 38
>COG0401 Uncharacterized homolog of Blt101 [Function unknown]
Probab=21.01 E-value=1.3e+02 Score=18.79 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhchhhhccCcEEEE
Q psy12483 193 YQMIKNLIWLLSRHYPERLGVCLIL 217 (233)
Q Consensus 193 ~~~~k~~~~~~q~~yP~rl~~i~iv 217 (233)
.+++-+++-++-.++|+.++.+|+|
T Consensus 29 ~df~iNiLLtlLg~~PGiiHA~yvi 53 (56)
T COG0401 29 KDFLINILLTLLGYIPGIIHALYVI 53 (56)
T ss_pred HHHHHHHHHHHHHhhhhhHhheEEE
Confidence 5666777777778999999999987
No 39
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=20.11 E-value=60 Score=21.68 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=19.9
Q ss_pred ChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 71 NDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 71 ~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
++..|.-=|..++ ||++|+.-|.+.
T Consensus 45 ~e~~i~eal~~~~fDvekAl~~Ll~~ 70 (79)
T PF08938_consen 45 PEEQIKEALWHYYFDVEKALDYLLSK 70 (79)
T ss_dssp -CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 7788889999999 999999988754
Done!