Query psy12483
Match_columns 233
No_of_seqs 135 out of 1460
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 20:31:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 100.0 3.7E-41 1.3E-45 287.5 17.8 197 34-233 45-256 (316)
2 1r5l_A Alpha-TTP, protein (alp 100.0 1.4E-40 4.7E-45 276.8 13.4 190 41-233 2-197 (262)
3 1aua_A Phosphatidylinositol tr 100.0 4.9E-39 1.7E-43 272.2 14.0 193 38-233 21-228 (296)
4 3q8g_A CRAL-TRIO domain-contai 100.0 7.3E-39 2.5E-43 273.5 15.0 193 38-233 30-243 (320)
5 1olm_A SEC14-like protein 2; l 100.0 1.3E-37 4.3E-42 274.0 16.7 191 38-233 3-208 (403)
6 3pg7_A Neurofibromin; SEC lipi 98.8 2.3E-09 7.9E-14 88.1 5.0 99 123-228 12-111 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 2.5E-09 8.4E-14 89.3 4.9 100 119-225 27-127 (290)
8 1vej_A Riken cDNA 4931431F19; 94.6 0.25 8.5E-06 32.0 7.7 37 47-93 29-66 (74)
9 1wgl_A TOLL-interacting protei 92.5 0.36 1.2E-05 29.8 5.6 43 43-94 5-48 (59)
10 2dhy_A CUE domain-containing p 91.2 1.2 4E-05 28.2 6.9 42 45-95 16-58 (67)
11 2dah_A Ubiquilin-3; UBA domain 85.9 3.9 0.00013 24.5 6.4 38 48-95 10-48 (54)
12 2dna_A Unnamed protein product 85.2 3 0.0001 26.3 5.8 37 48-94 20-57 (67)
13 1wr1_B Ubiquitin-like protein 83.9 2.9 0.0001 25.5 5.3 37 48-94 18-55 (58)
14 2di0_A Activating signal coint 83.0 4.3 0.00015 25.9 5.9 40 46-94 12-52 (71)
15 2bwb_A Ubiquitin-like protein 81.0 3.8 0.00013 23.7 4.8 25 69-93 19-44 (46)
16 1otr_A Protein CUE2; protein-p 80.9 4.6 0.00016 23.7 5.1 39 48-95 5-44 (49)
17 1z96_A DNA-damage, UBA-domain 79.9 4.4 0.00015 22.2 4.8 23 70-92 16-39 (40)
18 1vg5_A RSGI RUH-014, rhomboid 79.1 10 0.00035 24.2 7.1 41 42-93 24-65 (73)
19 2cp8_A NEXT to BRCA1 gene 1 pr 75.3 10 0.00035 22.7 5.6 35 50-94 12-47 (54)
20 2dal_A Protein KIAA0794; FAS a 75.2 7.2 0.00025 24.0 5.1 43 40-92 8-51 (62)
21 2knz_A Ubiquilin-4; cytoplasm, 74.6 6.3 0.00021 23.4 4.6 26 69-94 23-49 (53)
22 2dam_A ETEA protein; KIAA0887, 74.5 9.2 0.00031 23.9 5.5 44 41-93 12-56 (67)
23 2jy5_A Ubiquilin-1; UBA, alter 73.7 11 0.00039 22.1 5.8 36 48-93 13-49 (52)
24 2cwb_A Chimera of immunoglobul 72.4 6.5 0.00022 27.2 4.8 37 48-94 67-104 (108)
25 1wgn_A UBAP1, ubiquitin associ 69.1 5 0.00017 24.7 3.2 44 39-93 11-55 (63)
26 1wji_A Tudor domain containing 64.3 21 0.00071 21.9 5.5 26 70-95 21-47 (63)
27 2g3q_A Protein YBL047C; endocy 57.4 17 0.00058 20.2 3.9 24 70-93 16-40 (43)
28 1ify_A HHR23A, UV excision rep 56.8 24 0.00082 20.3 4.6 25 70-94 20-45 (49)
29 1veg_A NEDD8 ultimate buster-1 56.3 39 0.0013 22.1 6.4 40 45-95 27-67 (83)
30 2dak_A Ubiquitin carboxyl-term 55.3 33 0.0011 20.9 6.7 41 45-96 7-48 (63)
31 1v92_A NSFL1 cofactor P47; 3-h 55.0 22 0.00074 19.9 4.2 23 70-92 18-41 (46)
32 1wiv_A UBP14, ubiquitin-specif 54.5 34 0.0012 21.6 5.4 39 45-94 27-66 (73)
33 3e21_A HFAF1, FAS-associated f 50.9 29 0.00099 19.8 4.1 36 46-91 4-41 (45)
34 1dv0_A DNA repair protein HHR2 46.6 8.5 0.00029 22.2 1.4 24 69-92 15-39 (47)
35 1ufz_A Hypothetical protein BA 43.5 58 0.002 21.2 5.1 45 43-95 26-75 (83)
36 2ahq_A Sigma-54, RNA polymeras 41.8 66 0.0022 20.6 5.2 42 50-94 21-64 (76)
37 2dai_A Ubadc1, ubiquitin assoc 41.6 70 0.0024 20.7 6.9 41 44-95 26-67 (83)
38 2ekk_A UBA domain from E3 ubiq 37.3 56 0.0019 18.4 4.8 39 44-93 6-44 (47)
39 2cp9_A EF-TS, EF-TSMT, elongat 35.6 78 0.0027 19.5 5.1 42 44-95 6-48 (64)
40 1p3q_Q VPS9P, vacuolar protein 35.3 21 0.00072 21.3 1.9 26 69-94 25-51 (54)
41 3dct_B Nuclear receptor coacti 32.2 22 0.00076 16.5 1.3 13 71-83 4-16 (21)
42 2qsf_X RAD23, UV excision repa 30.4 65 0.0022 24.1 4.3 42 41-93 124-166 (171)
43 4hb7_A Dihydropteroate synthas 27.4 1.5E+02 0.005 23.9 6.3 75 132-211 124-201 (270)
44 2d9s_A CBL E3 ubiquitin protei 26.7 1E+02 0.0036 18.2 4.0 27 70-96 21-48 (53)
45 1wj7_A Hypothetical protein (R 26.6 1.5E+02 0.0052 20.1 5.3 25 70-94 52-77 (104)
46 2ooa_A E3 ubiquitin-protein li 25.9 1.1E+02 0.0037 18.0 5.4 27 69-95 22-49 (52)
47 1q02_A Sequestosome 1; helical 25.3 1.1E+02 0.0037 18.0 4.6 23 71-93 25-48 (52)
48 2dkl_A Trinucleotide repeat co 25.0 1.5E+02 0.005 19.3 4.9 25 70-94 33-58 (85)
49 3kdg_A DNA mismatch repair pro 23.5 1E+02 0.0035 23.3 4.5 95 42-139 66-183 (197)
50 2dzl_A Protein FAM100B; UBA-li 23.5 88 0.003 19.2 3.4 34 49-92 19-53 (66)
51 4ae4_A Ubiquitin-associated pr 20.4 2.2E+02 0.0075 19.6 5.4 46 42-98 3-49 (118)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=3.7e-41 Score=287.50 Aligned_cols=197 Identities=20% Similarity=0.369 Sum_probs=166.3
Q ss_pred ecccCCCCCCccccHHHHHHHHHHHHhhhCCCC---------CCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcC
Q psy12483 34 RIEMGDQATAAEVNEEDFQKLKERMKMISDADP---------LQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYD 103 (233)
Q Consensus 34 ~~~~~~~~~~~~~~~~~i~~lr~~l~~~~~~~~---------~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~ 103 (233)
..|..+++|+++..+++|++||+|++++++..+ ....||.+|+||||+++ |+++|.++|.++++||++++
T Consensus 45 ~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~ 124 (316)
T 3hx3_A 45 QKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP 124 (316)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc
Confidence 347788999999999999999999999875210 13579999999999999 99999999999999999987
Q ss_pred C--CCccCCchHHHHHHHhcCceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEE
Q psy12483 104 V--ASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVF 181 (233)
Q Consensus 104 ~--~~l~~~~~~~~~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~ 181 (233)
. +++. .+++.+.++.|++++++|+|++||||++++++.++++..+.++++|++++++|.++.. .+.+++|+++|+
T Consensus 125 ~~~~~~~--~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~-~~~~v~g~v~Ii 201 (316)
T 3hx3_A 125 ELFDSLS--PEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLEN-EETQINGFCIIE 201 (316)
T ss_dssp GGTTTCC--HHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTS-HHHHHHCEEEEE
T ss_pred hhhcCCC--HHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhc-ccCCcceEEEEE
Confidence 4 2332 3467788899998889999999999999999999999999999999999999998753 356789999999
Q ss_pred ecCCCCCCCC---CHHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 182 DLKDFGLSCM---DYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 182 D~~g~~~~~~---~~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
|++|+|++|+ +++.+|.+++++|++||+|++++||||+|++|+++|+++|||
T Consensus 202 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpf 256 (316)
T 3hx3_A 202 NFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPF 256 (316)
T ss_dssp ECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGG
T ss_pred ECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHh
Confidence 9999999874 788999999999999999999999999999999999999997
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=1.4e-40 Score=276.81 Aligned_cols=190 Identities=19% Similarity=0.290 Sum_probs=161.7
Q ss_pred CCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCC--CCccCCchHHHHH
Q psy12483 41 ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDV--ASLTDQNPIIKSH 117 (233)
Q Consensus 41 ~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~--~~l~~~~~~~~~~ 117 (233)
+++++.++++|++||+++++...+..+...||.+|+||||+++ |+++|.++|+++++||++++. .++. .+++.+.
T Consensus 2 ~~ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~--~~~~~~~ 79 (262)
T 1r5l_A 2 SHMSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLH--PRSIIGL 79 (262)
T ss_dssp -------CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCC--GGGTHHH
T ss_pred CCccHHHHHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCC--hHHHHHH
Confidence 3677888899999999999875433235689999999999999 999999999999999999862 2232 2357778
Q ss_pred HHhcCceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC---CHH
Q psy12483 118 LEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM---DYQ 194 (233)
Q Consensus 118 ~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~---~~~ 194 (233)
++.|+..+++|+|++||||++++++.++++.++.++++|++++++|.++.. .+.++.|+++|+|++|+|++|+ +++
T Consensus 80 ~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~-~~~~~~g~~~I~D~~g~s~~~~~~~~~~ 158 (262)
T 1r5l_A 80 LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQE-VETQRNGIKAIFDLEGWQFSHAFQITPS 158 (262)
T ss_dssp HHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTS-HHHHHHCEEEEEECTTCCHHHHHHCCHH
T ss_pred HHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhC-hhhcccceEEEEECCCCCHHHHhccCHH
Confidence 888988888999999999999999999999899999999999999987643 3456789999999999999886 689
Q ss_pred HHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 195 MIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 195 ~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
.+|.+++++|++||+|++++||||+|++|+++|+++|||
T Consensus 159 ~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpf 197 (262)
T 1r5l_A 159 VAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPF 197 (262)
T ss_dssp HHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGG
T ss_pred HHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999997
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=4.9e-39 Score=272.17 Aligned_cols=193 Identities=22% Similarity=0.379 Sum_probs=162.9
Q ss_pred CCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCCccCC-chHHH
Q psy12483 38 GDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLTDQ-NPIIK 115 (233)
Q Consensus 38 ~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~l~~~-~~~~~ 115 (233)
+.++++++.++++|++||+|+++.+ + ....||.+|+||||+++ |+++|.++|+++++||++++++++..+ ++.-.
T Consensus 21 ~~~~~l~~~q~~~l~~lr~~l~~~~--~-~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~ 97 (296)
T 1aua_A 21 GTPGNLDSAQEKALAELRKLLEDAG--F-IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEK 97 (296)
T ss_dssp TSTTTCCTTHHHHHHHHHHHHHHTT--C-CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcC--C-CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcH
Confidence 3456788899999999999999865 2 35689999999999999 999999999999999999987766432 11112
Q ss_pred HHHHhcCceEecccCCCCCeEEEEeCCCcCCC----CCCHHHHHHHHHHHHHHHHHhh-------ccCCcccEEEEEecC
Q psy12483 116 SHLEKNKARVLKHRDMNGRPVIYIPARNHNAN----DRDIDEITKFIVYCLEEACKKC-------FEEVVDNLCIVFDLK 184 (233)
Q Consensus 116 ~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~----~~~~~~~~r~~~~~lE~~~~~~-------~~~~~~~~v~I~D~~ 184 (233)
..+...++.+++|+|++||||+|++++.++++ ..+.+++++++++.+|.+++.. .+.+++++++|+|++
T Consensus 98 ~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~ 177 (296)
T 1aua_A 98 PLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLK 177 (296)
T ss_dssp HHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred HHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECC
Confidence 34455556667899999999999999988754 3588999999999999876532 234689999999999
Q ss_pred CCCCCCCC--HHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 185 DFGLSCMD--YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 185 g~~~~~~~--~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
|++++|++ ++.+|.+++++|++||+|++++||||+|++|+++|+++|||
T Consensus 178 g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpf 228 (296)
T 1aua_A 178 GISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF 228 (296)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhh
Confidence 99999886 68899999999999999999999999999999999999997
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=7.3e-39 Score=273.50 Aligned_cols=193 Identities=23% Similarity=0.376 Sum_probs=164.1
Q ss_pred CCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCCccCCc-hH--
Q psy12483 38 GDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLTDQN-PI-- 113 (233)
Q Consensus 38 ~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~l~~~~-~~-- 113 (233)
+.+++++++++++|++||+|+++.+ .+ ...||.+|+||||+++ |+++|.++|+++++||++++++++..+. +.
T Consensus 30 g~~~~lt~~q~~~l~~lR~~l~~~~--~~-~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~ 106 (320)
T 3q8g_A 30 GTPGNLTKEQEEALLQFRSILLEKN--YK-ERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKE 106 (320)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHHTT--CC-SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcC--CC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccc
Confidence 4567899999999999999999875 23 4689999999999999 9999999999999999999987765321 11
Q ss_pred ----HHHHHHhcCceEecccCCCCCeEEEEeCCCcCCCC----CCHHHHHHHHHHHHHHHHHh-------hccCCcccEE
Q psy12483 114 ----IKSHLEKNKARVLKHRDMNGRPVIYIPARNHNAND----RDIDEITKFIVYCLEEACKK-------CFEEVVDNLC 178 (233)
Q Consensus 114 ----~~~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~~----~~~~~~~r~~~~~lE~~~~~-------~~~~~~~~~v 178 (233)
-...+...++.+++|+|++||||+|+++|.++++. .+.+++++++++.+|.+++. ..+..+++++
T Consensus 107 ~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~ 186 (320)
T 3q8g_A 107 AEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSC 186 (320)
T ss_dssp HHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEE
T ss_pred cchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeE
Confidence 12344555667789999999999999999988754 47889999999999987642 1233578999
Q ss_pred EEEecCCCCCCCCC--HHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 179 IVFDLKDFGLSCMD--YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 179 ~I~D~~g~~~~~~~--~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
+|+|++|+|+++++ ++.+|.+++++|++||+|++++||||+|++|+++|+++|||
T Consensus 187 ~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpf 243 (320)
T 3q8g_A 187 TVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPF 243 (320)
T ss_dssp EEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGG
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHh
Confidence 99999999999875 68899999999999999999999999999999999999997
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.3e-37 Score=274.01 Aligned_cols=191 Identities=20% Similarity=0.361 Sum_probs=162.7
Q ss_pred CCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCCccC-CchHHH
Q psy12483 38 GDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLTD-QNPIIK 115 (233)
Q Consensus 38 ~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~l~~-~~~~~~ 115 (233)
|.++++++.+++++++||+|+++.....+ ..||.+|+|||||++ |+++|.++|+++++||++++++.+.. ..++..
T Consensus 3 g~~~~l~~~q~~~l~~lr~~l~~~~~~l~--~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~ 80 (403)
T 1olm_A 3 GRVGDLSPRQKEALAKFRENVQDVLPALP--NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVI 80 (403)
T ss_dssp SBTTBCCHHHHHHHHHHHHHHGGGGGGSS--CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHhhccCCC--CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHHH
Confidence 45678999999999999999998642222 579999999999999 99999999999999999998876643 223333
Q ss_pred HHHHhcCceEecccCCCCCeEEEEeCCCcCCC----CCCHHHHHHHHHHHHHHHHHhhcc------CCcccEEEEEecCC
Q psy12483 116 SHLEKNKARVLKHRDMNGRPVIYIPARNHNAN----DRDIDEITKFIVYCLEEACKKCFE------EVVDNLCIVFDLKD 185 (233)
Q Consensus 116 ~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~----~~~~~~~~r~~~~~lE~~~~~~~~------~~~~~~v~I~D~~g 185 (233)
+.+. ...++|+|++||||+|++++.++++ ..+.++++|++++++|.++..+.. .+++|+++|+|++|
T Consensus 81 ~~~~---~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g 157 (403)
T 1olm_A 81 QQYL---SGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEG 157 (403)
T ss_dssp HHHC---CBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred HHhC---CceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCC
Confidence 3332 2235799999999999999998875 479999999999999998876532 25899999999999
Q ss_pred CCCCCCC---HHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483 186 FGLSCMD---YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233 (233)
Q Consensus 186 ~~~~~~~---~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf 233 (233)
+++++++ ++.+|.+++++|++||+|++++||||+|++|+++|+++|||
T Consensus 158 ~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpf 208 (403)
T 1olm_A 158 LGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPF 208 (403)
T ss_dssp CCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGG
T ss_pred CCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhh
Confidence 9999984 57889999999999999999999999999999999999997
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=98.84 E-value=2.3e-09 Score=88.13 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=79.9
Q ss_pred ceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC-CHHHHHHHHH
Q psy12483 123 ARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM-DYQMIKNLIW 201 (233)
Q Consensus 123 ~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~-~~~~~k~~~~ 201 (233)
+++-.|.|++||||+++..++.++...+.+.++.+++..++... ...+.+|+|.+|++..+. +.++++.+.+
T Consensus 12 ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~-------~~~y~lV~d~T~~~~~n~p~~~wl~~~~~ 84 (256)
T 3pg7_A 12 IFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY-------AKPYEIVVDLTHTGPSNRFKTDFLSKWFV 84 (256)
T ss_dssp SEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT-------TSCEEEEEECTTCCGGGCCCHHHHHHTTT
T ss_pred CEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCCCCcccCCcHHHHHHHHH
Confidence 45566999999999999999888777777766555444444221 357999999999998655 6889999999
Q ss_pred HHhchhhhccCcEEEEcCCcccHHHhh
Q psy12483 202 LLSRHYPERLGVCLILNSPTLFSGCWT 228 (233)
Q Consensus 202 ~~q~~yP~rl~~i~ivN~p~~~~~~~~ 228 (233)
++...|...|+++||+|++++|...|.
T Consensus 85 llp~~~~kNlk~~Yivnpt~~~k~~~~ 111 (256)
T 3pg7_A 85 VFPGFAYDNVSAVYIYNCNSWVREYTK 111 (256)
T ss_dssp SSCHHHHHTEEEEEEESCCHHHHHHHH
T ss_pred HcCHHHHhcccEEEEECCCHHHHHHHH
Confidence 999999999999999999999985543
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.83 E-value=2.5e-09 Score=89.35 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=80.6
Q ss_pred HhcCceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC-CHHHHH
Q psy12483 119 EKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM-DYQMIK 197 (233)
Q Consensus 119 ~~g~~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~-~~~~~k 197 (233)
..+.+++-.|.|++|+||+++..++.+....+.+.++-+++..++..+ ...+++|+|+++++..+- +.++++
T Consensus 27 ~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~-------~~~y~lV~D~T~~~~~n~p~~~~l~ 99 (290)
T 3peg_A 27 KTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY-------AKPYEIVVDLTHTGPSNRFKTDFLS 99 (290)
T ss_dssp GGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT-------TSCEEEEEECTTCCGGGCCCHHHHG
T ss_pred hcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhc-------CCCeEEEEEcCCCCccCCChHHHHH
Confidence 345566667899999999999999988777787765555444333221 358999999999998654 688999
Q ss_pred HHHHHHhchhhhccCcEEEEcCCcccHH
Q psy12483 198 NLIWLLSRHYPERLGVCLILNSPTLFSG 225 (233)
Q Consensus 198 ~~~~~~q~~yP~rl~~i~ivN~p~~~~~ 225 (233)
.+.+++...|+..++++||+|++.+|..
T Consensus 100 ~~~~llp~~~~kNl~~~Yi~np~~~f~~ 127 (290)
T 3peg_A 100 KWFVVFPGFAYDNVSAVYIYNCNSWVRE 127 (290)
T ss_dssp GGGTSSCHHHHHTEEEEEEESCCHHHHH
T ss_pred HHHHHCCHHHHhhccEEEEECCCHHHHH
Confidence 9999999999999999999999998886
No 8
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.58 E-value=0.25 Score=32.04 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483 47 NEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL 93 (233)
Q Consensus 47 ~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~ 93 (233)
-+++|++|+++ .+.++.-.++-|++++ |+++|.+.|.
T Consensus 29 ye~qi~qL~eM----------GF~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 29 YQQELEELKAL----------GFANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp SHHHHHHHHHH----------TCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHc----------CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35677777766 2456677899999999 9999998775
No 9
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=92.53 E-value=0.36 Score=29.81 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=35.2
Q ss_pred CccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 43 AAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 43 ~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
..+..++++++|++++. .++...+..-|++++ |++.|+..|.+
T Consensus 5 ~~~~~ee~l~~L~emFP---------~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 5 SSGCSEEDLKAIQDMFP---------NMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSSSCHHHHHHHHHHCS---------SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34556788888888852 468899999999999 99999998864
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.22 E-value=1.2 Score=28.25 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 45 EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 45 ~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
...++++++|++++. .++...+..-|++++ |++.|++.|.+.
T Consensus 16 ~~~~~~v~~L~~MFP---------~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFP---------NMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCSHHHHHHHHHHCS---------SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 345677888888852 368899999999999 999999988754
No 11
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=85.95 E-value=3.9 Score=24.54 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
+++|++|+++ .+.++.-.++-|+.++ |+++|.+.|...
T Consensus 10 ~~~l~~L~~M----------GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSM----------GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHH----------TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc----------CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 5677777766 2445566799999999 999999988653
No 12
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.22 E-value=3 Score=26.31 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
.++|++|+++ .+.++...++-|++++ |+++|++.|..
T Consensus 20 ~~ql~qL~~M----------GF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAM----------GFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHH----------TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc----------CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3466666654 3456777799999999 99999998764
No 13
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=83.92 E-value=2.9 Score=25.53 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
+++|++|+++ .+.++...++-|++++ |+++|.+.|..
T Consensus 18 ~~qi~~L~~M----------GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM----------GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH----------TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc----------CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4456666654 2456777799999999 99999998764
No 14
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.98 E-value=4.3 Score=25.86 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 46 VNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 46 ~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
.-...|.++++.+ | .+.+.++.+.|..++ |+|.+...|-+
T Consensus 12 ~l~s~I~qV~DLf-------P--dLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 12 ELDSLISQVKDLL-------P--DLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHC-------C--SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-------c--cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3445666666664 2 478999999999999 99999998864
No 15
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=80.97 E-value=3.8 Score=23.67 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483 69 YHNDFSLKRYLRAFK-QVDPAFQAIL 93 (233)
Q Consensus 69 ~~~D~~llRfLr~~~-dv~~A~~~l~ 93 (233)
+.++.-.++-|++++ |+++|.+.|-
T Consensus 19 F~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 446677799999999 9999998764
No 16
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=80.94 E-value=4.6 Score=23.72 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
+++++.|.+++. .++-..+..-|..++ |+++|.+.|.+.
T Consensus 5 e~~v~~L~EMFP---------~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 5 ESKLSILMDMFP---------AISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHCS---------SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456666666642 357788999999999 999999988754
No 17
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=79.94 E-value=4.4 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=18.8
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAI 92 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l 92 (233)
.+.....+.|+.++ |++.|...|
T Consensus 16 f~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 16 FDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35667789999999 999998754
No 18
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=79.07 E-value=10 Score=24.25 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483 42 TAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL 93 (233)
Q Consensus 42 ~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~ 93 (233)
...+..+++|++|.++ ..+.....+-|+.++ |+++|.+.|.
T Consensus 24 ~~~~~~ee~I~~L~eM-----------GF~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAM-----------GFDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp CCSCCCHHHHHHHHTT-----------TCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCcccHHHHHHHHHc-----------CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4566667777665543 247788899999999 9999988765
No 19
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=75.33 E-value=10 Score=22.70 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 50 DFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 50 ~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
++++|+++ .+.|...-.+-|+.++ |+++|+..|..
T Consensus 12 ~L~~L~eM----------GF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 12 LMAHLFEM----------GFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp HHHHHHHH----------TCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHc----------CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 56666655 4678888999999999 99999988764
No 20
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.15 E-value=7.2 Score=23.97 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=32.6
Q ss_pred CCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHH
Q psy12483 40 QATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAI 92 (233)
Q Consensus 40 ~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l 92 (233)
...+++.+++.|++|...- ..++.....||..++ |++.|+..+
T Consensus 8 ~~~~s~~~~e~i~qF~~iT----------g~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 8 GSAASSALKGLIQQFTTIT----------GASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCSSCHHHHHHHHHHHHHT----------CCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred hhhcCccHHHHHHHHHHHh----------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3566677777887777542 245788999999999 999998755
No 21
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=74.62 E-value=6.3 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 69 YHNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 69 ~~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
+.++...++-|++++ |+++|.+.|..
T Consensus 23 F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 23 FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 447888899999999 99999988754
No 22
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.47 E-value=9.2 Score=23.93 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=32.9
Q ss_pred CCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483 41 ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL 93 (233)
Q Consensus 41 ~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~ 93 (233)
++++..+++.|++|...-. ..+......||..++ |++.|+..+-
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg---------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTG---------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHC---------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhC---------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4667777777877776542 135678899999999 9999987653
No 23
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=73.75 E-value=11 Score=22.14 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL 93 (233)
Q Consensus 48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~ 93 (233)
+++|++|.++ .+.++...++-|++++ |+++|.+.|.
T Consensus 13 ~~~l~~L~~M----------GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 13 QQQLEQLSAM----------GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHHT----------TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHc----------CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4556555544 2447788899999999 9999998764
No 24
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=72.37 E-value=6.5 Score=27.23 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
+++|++|+++ .+.++...++-|++++ |+++|++.|..
T Consensus 67 ~~qL~qL~eM----------GF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDM----------GIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTT----------TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc----------CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4566555543 3456678899999999 99999998864
No 25
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.13 E-value=5 Score=24.75 Aligned_cols=44 Identities=2% Similarity=0.015 Sum_probs=33.7
Q ss_pred CCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483 39 DQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL 93 (233)
Q Consensus 39 ~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~ 93 (233)
++..+++.+.++|+.|-.+ ..++....+=|++++ |+|+|.+=|-
T Consensus 11 ~l~~ls~se~e~V~~LvsM-----------GFs~~qA~kALKat~~NvErAaDWLF 55 (63)
T 1wgn_A 11 ELQMLSPSERQCVETVVNM-----------GYSYECVLRAMKKKGENIEQILDYLF 55 (63)
T ss_dssp HHHTCCHHHHHHHHHHHHH-----------HCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHhhCcchHHHHHHHHHc-----------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3346778888888777644 247788999999999 9999987554
No 26
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.29 E-value=21 Score=21.95 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=21.2
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
.+.....+-|++++ |+++|.+-|..+
T Consensus 21 F~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 21 FSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 46677889999999 999999877654
No 27
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=57.42 E-value=17 Score=20.22 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.7
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAIL 93 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l~ 93 (233)
.+.....+=|+.++ |++.|.+-|-
T Consensus 16 F~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 16 FTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 46677888999999 9999987664
No 28
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.84 E-value=24 Score=20.35 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=21.3
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
.+.....+=|++++ |+++|.+-|-.
T Consensus 20 F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 20 YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 47788899999999 99999987754
No 29
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.29 E-value=39 Score=22.06 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 45 EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 45 ~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
+..+++|++|.++ ..+.....+-|+.++ |+++|.+-|-.+
T Consensus 27 ~~~ee~I~~Lv~M-----------GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 27 SPSQESINQLVYM-----------GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCCHHHHHHHHHH-----------SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-----------CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3356777777655 247788899999999 999999887754
No 30
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.33 E-value=33 Score=20.89 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHH
Q psy12483 45 EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTN 96 (233)
Q Consensus 45 ~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~ 96 (233)
+..++.|++|.++ ..+.....+-|++++ |++.|.+-|-.+.
T Consensus 7 ~~~~~~v~~L~~M-----------GF~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 7 GPPEDCVTTIVSM-----------GFSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp CCCHHHHHHHHHH-----------TCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-----------CCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4456667666654 135678889999999 9999998887654
No 31
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=55.04 E-value=22 Score=19.94 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=19.8
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAI 92 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l 92 (233)
.+......||..++ |++.|...+
T Consensus 18 ~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 18 AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46788999999999 999998754
No 32
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=54.52 E-value=34 Score=21.61 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 45 EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 45 ~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
+..+++|++|.++ ..+.....+-|++++ |++.|.+-|-.
T Consensus 27 ~~~~~~v~~L~~M-----------GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 27 DIDQSSVDTLLSF-----------GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp SSCHHHHHHHHHH-----------TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-----------CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4456677666654 246778899999999 99999887653
No 33
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=50.85 E-value=29 Score=19.81 Aligned_cols=36 Identities=8% Similarity=-0.054 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHHHhhhCCCCCCCCCh-HHHHHHHHhcC-ChhHHHHH
Q psy12483 46 VNEEDFQKLKERMKMISDADPLQYHND-FSLKRYLRAFK-QVDPAFQA 91 (233)
Q Consensus 46 ~~~~~i~~lr~~l~~~~~~~~~~~~~D-~~llRfLr~~~-dv~~A~~~ 91 (233)
.+.+.|.+|...- ..+| .....||.+++ |++.|...
T Consensus 4 d~de~ia~F~~iT----------G~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 4 DREMILADFQACT----------GIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp CHHHHHHHHHHHH----------CCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred cHHHHHHHHHHHH----------CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4566777776642 2355 78889999999 99998753
No 34
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=46.56 E-value=8.5 Score=22.22 Aligned_cols=24 Identities=8% Similarity=-0.117 Sum_probs=19.7
Q ss_pred CCChHHHHHHHHhcC-ChhHHHHHH
Q psy12483 69 YHNDFSLKRYLRAFK-QVDPAFQAI 92 (233)
Q Consensus 69 ~~~D~~llRfLr~~~-dv~~A~~~l 92 (233)
..+....++=|.+|+ |++.|..-|
T Consensus 15 GF~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 15 GFPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp TCCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 357778888999999 999998755
No 35
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=43.46 E-value=58 Score=21.23 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=32.2
Q ss_pred CccccHH----HHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 43 AAEVNEE----DFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 43 ~~~~~~~----~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
+++..+. .++++|..+.. -.+|..|.+-...++ |+++|...+.+-
T Consensus 26 Ls~~d~arL~SCLd~iR~VlGd--------sV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 26 LSEIDQARLYSCLDHMREVLGD--------AVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTT--------TSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcc--------cCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4555554 44566665542 357889999999999 999999988654
No 36
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=41.80 E-value=66 Score=20.55 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-Chh-HHHHHHHH
Q psy12483 50 DFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVD-PAFQAILK 94 (233)
Q Consensus 50 ~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~-~A~~~l~~ 94 (233)
-.+.++++++.. ++.+.++|.-|..-|...+ ++. .++.++++
T Consensus 21 Ik~~Ik~lI~~E---d~~kPlSD~~I~~~L~~~Gi~IaRRTVaKYRe 64 (76)
T 2ahq_A 21 LMKLIKEIVENE---DKRKPYSDQEIANILKEKGFKVARRTVAKYRE 64 (76)
T ss_dssp HHHHHHHHGGGC---CSSSCCCHHHHHHHHTTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCCCCCHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 334566666654 2346689999999999998 775 66665543
No 37
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.56 E-value=70 Score=20.73 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=30.3
Q ss_pred ccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 44 AEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 44 ~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
++..++.|++|.++ ..+.....+-|++++ |++.|.+-|-.+
T Consensus 26 ~~~~e~~i~~L~~M-----------GF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 26 ERVDEAALRQLTEM-----------GFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp SSCCHHHHHHHHHH-----------TCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHc-----------CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 44566777777664 146678889999999 999998877654
No 38
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.31 E-value=56 Score=18.38 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=26.1
Q ss_pred ccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcCChhHHHHHHH
Q psy12483 44 AEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAIL 93 (233)
Q Consensus 44 ~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~dv~~A~~~l~ 93 (233)
++..++.|++|.++ . .+.....+=|++++|++.|.+-|-
T Consensus 6 ~~~~~~~v~~L~~M-G----------F~~~~a~~AL~~~~n~e~A~~~L~ 44 (47)
T 2ekk_A 6 SGVNQQQLQQLMDM-G----------FTREHAMEALLNTSTMEQATEYLL 44 (47)
T ss_dssp CSSCHHHHHHHHHH-H----------CCHHHHHHHHHHSCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc-C----------CCHHHHHHHHHHcCCHHHHHHHHH
Confidence 34456666666654 1 355677788888888888887664
No 39
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=35.60 E-value=78 Score=19.50 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=30.5
Q ss_pred ccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 44 AEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 44 ~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
.+...+.|++||+.-. ..-...-.-|..++ |+++|+..|++-
T Consensus 6 ~~it~~~Vk~LRe~TG----------ag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTG----------YSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp SCCCCHHHHHHHHHHC----------CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhC----------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445578888888753 13345678889999 999999988754
No 40
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=35.35 E-value=21 Score=21.31 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=17.7
Q ss_pred CCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 69 YHNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 69 ~~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
.+|...+..-|++++ +++.|...+..
T Consensus 25 ~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 25 DMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp TSCHHHHHHHHHHSCC--CGGGC----
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 468899999999999 99988876644
No 41
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=32.15 E-value=22 Score=16.45 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=9.7
Q ss_pred ChHHHHHHHHhcC
Q psy12483 71 NDFSLKRYLRAFK 83 (233)
Q Consensus 71 ~D~~llRfLr~~~ 83 (233)
.|..|+|||-..+
T Consensus 4 kdhqllrylldkd 16 (21)
T 3dct_B 4 KDHQLLRYLLDKD 16 (26)
T ss_pred hHHHHHHHHHccc
Confidence 4678889987664
No 42
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=30.45 E-value=65 Score=24.08 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=30.2
Q ss_pred CCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483 41 ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL 93 (233)
Q Consensus 41 ~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~ 93 (233)
...+++++++|+.|.++ ..+....++-|.+|+ |.+.|...|-
T Consensus 124 i~~tpee~eaI~rL~~m-----------GF~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 124 VDYTPEDDQAISRLCEL-----------GFERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp CCCCHHHHHHHHHHHTT-----------TCCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHc-----------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36677777777555532 246777788899999 9999988764
No 43
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=27.39 E-value=1.5e+02 Score=23.89 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=41.8
Q ss_pred CCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC---CHHHHHHHHHHHhchhh
Q psy12483 132 NGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM---DYQMIKNLIWLLSRHYP 208 (233)
Q Consensus 132 ~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~---~~~~~k~~~~~~q~~yP 208 (233)
.|.|++++.++......--+.++..++.--++.+ ....+...-+|+|= |+|++.- ++.+++.+-.+..-.||
T Consensus 124 ~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a----~~aGI~~~~IilDP-GiGFgKt~~~N~~ll~~l~~~~~lg~P 198 (270)
T 4hb7_A 124 YDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQA----KIAGIPSNKIWLDP-GIGFAKTRNEEAEVMARLDELVATEYP 198 (270)
T ss_dssp TTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHH----HHTTCCGGGEEEEC-CTTSSCCHHHHHHHHTCHHHHHTTCSC
T ss_pred cCCCeEEeccccCCccccchhHHHHHHHHHHHHH----HHcCCCCceEEEeC-CCCcccccccHHHHHhhHHHHhcCCCC
Confidence 4677877765433222212344444433222322 23335455678997 7777643 46677777777777788
Q ss_pred hcc
Q psy12483 209 ERL 211 (233)
Q Consensus 209 ~rl 211 (233)
-.+
T Consensus 199 vLv 201 (270)
T 4hb7_A 199 VLL 201 (270)
T ss_dssp BEE
T ss_pred EEE
Confidence 654
No 44
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.71 E-value=1e+02 Score=18.18 Aligned_cols=27 Identities=7% Similarity=0.023 Sum_probs=23.5
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAILKTN 96 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l~~~~ 96 (233)
.+..-..+-|...+ |++.|...|.++.
T Consensus 21 F~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 21 YSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 57788899999999 9999999988653
No 45
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.64 E-value=1.5e+02 Score=20.11 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.5
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
.+......-|..++ |+++|...|..
T Consensus 52 ~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 52 KNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 56777888899999 99999887763
No 46
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=25.86 E-value=1.1e+02 Score=18.04 Aligned_cols=27 Identities=19% Similarity=-0.012 Sum_probs=23.5
Q ss_pred CCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483 69 YHNDFSLKRYLRAFK-QVDPAFQAILKT 95 (233)
Q Consensus 69 ~~~D~~llRfLr~~~-dv~~A~~~l~~~ 95 (233)
..+..-..+-|+..+ |++-|...|.++
T Consensus 22 GFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 22 GYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 357888999999999 999999988765
No 47
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=25.35 E-value=1.1e+02 Score=17.98 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.9
Q ss_pred ChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483 71 NDFSLKRYLRAFK-QVDPAFQAIL 93 (233)
Q Consensus 71 ~D~~llRfLr~~~-dv~~A~~~l~ 93 (233)
+-.+|-|.|.+.+ |+.+|...|.
T Consensus 25 egGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 25 EGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp TTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred cccHHHHHHHHccCCHHHHHHHhh
Confidence 4578999999999 9999998774
No 48
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.01 E-value=1.5e+02 Score=19.28 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=19.8
Q ss_pred CChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483 70 HNDFSLKRYLRAFK-QVDPAFQAILK 94 (233)
Q Consensus 70 ~~D~~llRfLr~~~-dv~~A~~~l~~ 94 (233)
.+.....+-|+.++ |++.|.+-|..
T Consensus 33 F~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 33 FPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35677788889999 99999887653
No 49
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=23.49 E-value=1e+02 Score=23.26 Aligned_cols=95 Identities=9% Similarity=0.042 Sum_probs=48.4
Q ss_pred CCccccHHHHHHHHHHHHhhhCCC-------------CC--CCCChH-H---HHHHHHhcC--ChhHHHHHHHHHHHHHh
Q psy12483 42 TAAEVNEEDFQKLKERMKMISDAD-------------PL--QYHNDF-S---LKRYLRAFK--QVDPAFQAILKTNKWRV 100 (233)
Q Consensus 42 ~~~~~~~~~i~~lr~~l~~~~~~~-------------~~--~~~~D~-~---llRfLr~~~--dv~~A~~~l~~~~~wR~ 100 (233)
+.++.+.+.+++.++.+++..-.. |. ...+.. . ++..|...+ +.++..+.+....+-|.
T Consensus 66 ~ls~~e~~~l~~~~~~l~~~Gf~~e~~g~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~~~~~~~~~~~~~~~ACr~ 145 (197)
T 3kdg_A 66 HYSTNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKNIDIKKLREEAAIMMSCKG 145 (197)
T ss_dssp ECCTTHHHHHHHTHHHHHHTTCCCEECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHHHHHhCCCEEEECCCCEEEEEecCcccccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhHh
Confidence 567777788888888888654210 10 111222 2 344444443 55555555555556555
Q ss_pred HcCC-CCccCC-chHHHHHHHhcCceEecccCCCCCeEEEE
Q psy12483 101 EYDV-ASLTDQ-NPIIKSHLEKNKARVLKHRDMNGRPVIYI 139 (233)
Q Consensus 101 ~~~~-~~l~~~-~~~~~~~~~~g~~~~l~g~d~~GrpV~~~ 139 (233)
.... +.++.. ...+.+.+... -.|...++|||+++-
T Consensus 146 AIk~g~~Ls~~Em~~Ll~~L~~~---~~p~~CpHGRPt~~~ 183 (197)
T 3kdg_A 146 SIKANRHLRNDEIKALLDDLRST---SDPFTCPHGRPIIIH 183 (197)
T ss_dssp ----CCCCCHHHHHHHHHHHHHS---SCTTBCTTSCBCEEE
T ss_pred hccCCCCCCHHHHHHHHHHHHcC---CCCCcCCCCCcEEEE
Confidence 5433 334421 11233444332 246778999999664
No 50
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.45 E-value=88 Score=19.24 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHH
Q psy12483 49 EDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAI 92 (233)
Q Consensus 49 ~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l 92 (233)
+.|++|...- ..++.....||..++ |++.|...+
T Consensus 19 ~~i~qF~~iT----------g~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAA----------GCAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHH----------CCCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHc----------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5566666432 246788999999999 999998755
No 51
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=20.35 E-value=2.2e+02 Score=19.63 Aligned_cols=46 Identities=4% Similarity=0.045 Sum_probs=33.1
Q ss_pred CCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHH
Q psy12483 42 TAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKW 98 (233)
Q Consensus 42 ~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~w 98 (233)
.+++.+.+.+++|-++ ..+.....|=|+.++ |+++|.+-|..|...
T Consensus 3 ~l~~~e~~~v~~l~~M-----------GFp~~~~~kAl~~~g~~~e~amewL~~h~~L 49 (118)
T 4ae4_A 3 HMSPSERQCVETVVNM-----------GYSYECVLRAMKAAGANIEQILDYLFAHGQL 49 (118)
T ss_dssp CSCHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHCcCHHHHHHHHHHhchh
Confidence 4556666666555433 246678899999999 999999988887553
Done!