RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12483
(233 letters)
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 105 bits (264), Expect = 9e-29
Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 125 VLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLK 184
L RD GRPV+Y+ H+ ++E+ +F+V LE A E ++ + ++ D+K
Sbjct: 5 YLHGRDKEGRPVLYLRPGRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVIIDMK 64
Query: 185 DFGLSCMD---YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
LS MD +K ++ +L +YPERLG LI+N+P +F+ W +I+ +
Sbjct: 65 GLSLSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLIKPF 116
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 93.5 bits (233), Expect = 4e-24
Identities = 31/105 (29%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 130 DMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEE-VVDNLCIVFDLKDFGL 188
D +GRPV+ A + ++E+ +++VY LE+ ++ + ++ ++FDLK +
Sbjct: 16 DKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIEGFTVIFDLKGLSM 75
Query: 189 SCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
S D +++ ++ +L HYPERLG I+N P F W +I+ +
Sbjct: 76 SNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPF 120
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 83.6 bits (207), Expect = 3e-20
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 118 LEKNKARVLKHRDMNGRPVIYIPARNHNANDR-DIDEITKFIVYCLEEACKKCFEEVVDN 176
E K L RD GRPV+ I A N + + D +E+ +++VY LE+ ++ +E V+
Sbjct: 5 KELGKVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQED-DEQVEG 63
Query: 177 LCIVFDLKDFGLSCM--DYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
++ DLK LS + D ++K ++ +L +YPERL I+N P F W +++ +
Sbjct: 64 FVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPF 122
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain. This family
includes divergent members of the CRAL-TRIO domain
family. This family includes ECM25 that contains a
divergent CRAL-TRIO domain identified by Gallego and
colleagues.
Length = 149
Score = 47.3 bits (113), Expect = 5e-07
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 129 RDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGL 188
RD GRPV+ A+ A+D D++ + + Y L ++ + +V D
Sbjct: 8 RDKEGRPVLVFDAKRLPASDL--DDLDRLLFYLLSILSEELKPKG---FVVVIDHTGVTR 62
Query: 189 SCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFS 224
+ + +K L LL R +P+ L + + P+ F
Sbjct: 63 NKPSWSWLKKLYKLLPRAFPKNL-KAVYIVHPSTFL 97
>gnl|CDD|218268 pfam04793, Herpes_BBRF1, BRRF1-like protein. Family of herpesvirus
proteins including Epstein-barr virus protein BBRF1.
Length = 284
Score = 30.0 bits (68), Expect = 1.0
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 154 ITKFIVYCLEE----ACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPE 209
I I+Y L + C E + + L V D +D GL ++ K L LL YP
Sbjct: 59 IRSNIIYFLGLLHEASNGDCQELIREILDHVLDARDSGLEQ---ELAKLLPKLLKLKYPH 115
Query: 210 RLGVC 214
V
Sbjct: 116 AANVW 120
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain. This
all-alpha domain is found to the N-terminus of
pfam00650.
Length = 48
Score = 26.8 bits (60), Expect = 1.6
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRA--FKQVDPAFQAILKT 95
EE ++L+E+++ + D +D L R+LRA F V+ A + + KT
Sbjct: 1 EEKLEELREKLQELKDLLK-DKLDDAFLLRFLRARKFD-VEKAIKMLKKT 48
>gnl|CDD|236093 PRK07773, PRK07773, replicative DNA helicase; Validated.
Length = 886
Score = 29.3 bits (66), Expect = 1.9
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 23 ELNLRLLYIGWRIEMGDQATAAEVNEEDFQKLKERMKMISDA 64
+L +RLL +I++ D + ++++D+ +L M IS+A
Sbjct: 260 QLVMRLLSAEAKIKLSDMRSG-RMSDDDWTRLARAMGEISEA 300
>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor;
Provisional.
Length = 526
Score = 28.2 bits (62), Expect = 4.1
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 84 QVDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPAR- 142
+PA + +N V + +L D +P +KS +A V + + GRP+
Sbjct: 9 DEEPAVEVHNLSNNLLVHCVLDALPDSSPCLKSSETSFEAAVAEEDEEGGRPLFGDEEDI 68
Query: 143 NHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMD 192
+N+ND D E+ +C V + C D G+ C +
Sbjct: 69 INNSNDHDASPSCDAAAAAHEDFA-ECLNFVTEADC-----GDVGVQCFE 112
>gnl|CDD|227318 COG4985, COG4985, ABC-type phosphate transport system, auxiliary
component [Inorganic ion transport and metabolism].
Length = 289
Score = 28.0 bits (62), Expect = 4.6
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 13 STGGP---DQMCGELNLRLLYIGWRIEMGDQATAAEVNEEDFQKLKERMKMISDADPLQY 69
S G D + EL RLL + + +V++ Q+ +++I+ Q
Sbjct: 152 SNGQELDGDPLERELQKRLLEV--------ETLRDQVDKMVEQQ----VRVINS----QL 195
Query: 70 HNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHR 129
KR L+ Q+D FQ K ++ +A L + + E + +
Sbjct: 196 ERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTE--LDALRAELERQFLYL-V 252
Query: 130 DMNGRPV 136
DM G V
Sbjct: 253 DMQGETV 259
>gnl|CDD|225875 COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and
metabolism].
Length = 250
Score = 27.8 bits (62), Expect = 5.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 41 ATAAEVNEEDFQKLKERMKMISDADPLQYHND 72
EV++E + + M +A P+Q ND
Sbjct: 214 KEPIEVSQEQIAEFSKLMGH--NARPVQPLND 243
>gnl|CDD|225237 COG2362, DppA, D-aminopeptidase [Amino acid transport and
metabolism].
Length = 274
Score = 27.4 bits (61), Expect = 6.3
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 123 ARVLKHRDMNGRPVIYIPARNH-NANDRDIDE----ITKFIVYCLEEACKKCFEEVVDN 176
+V DM G P IP+R + +E +T+ +EEA EV+ N
Sbjct: 1 MKVFISVDMEGVP--GIPSREQVDPGGALYEEARRIMTREANAAVEEAFAAGATEVIVN 57
>gnl|CDD|219971 pfam08690, GET2, GET complex subunit GET2. This family corresponds
to the GET complex subunit GET2. The GET complex is
involved in the retrieval of ER resident proteins from
the Golgi.
Length = 298
Score = 27.4 bits (61), Expect = 7.2
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 139 IPARNHNANDRDIDEITKFIVYCLEEA 165
H+ + +I +I + I +E+
Sbjct: 56 STTSAHDQSTPEIQDILEAIDPPKDES 82
>gnl|CDD|234373 TIGR03846, sulfopy_beta, sulfopyruvate decarboxylase, beta subunit.
Nearly every member of this protein family is the beta
subunit, or else the C-terminal region, of sulfopyruvate
decarboxylase, in an archaeal species capable of
coenzyme M biosynthesis. However, the enzyme also occurs
in Roseovarius nubinhibens ISM in a degradative pathway,
where the resulting sulfoacetaldehyde is desulfonated to
acetyl phosphate, then converted to acetyl-CoA (see
PMID:19581363).
Length = 181
Score = 26.9 bits (60), Expect = 8.2
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 113 IIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDID 152
+ K E+ LK M G I++ + NA +I
Sbjct: 127 VEKVADEEELRDALKALAMKGPTFIHVKVKPGNAKVPNIP 166
>gnl|CDD|236427 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.
Length = 501
Score = 27.1 bits (61), Expect = 9.6
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 137 IYIPARNH-NANDRDIDEITKFI-----VY----CLEEACKKCFEEVVDNLCIVFDLKDF 186
I +P N A+ R ++EI + I +Y L EA ++ N D+K F
Sbjct: 406 IDMPTANELIAHGRTVEEIRQIIGADGLIYQDLEDLIEAVRE------GNP----DIKQF 455
Query: 187 GLSCMD 192
SC D
Sbjct: 456 ECSCFD 461
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 27.0 bits (60), Expect = 9.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 6 SHSPDSPSTGGPDQMCGELNL-RLLYIGWRIEMG 38
SH PD+ PD GEL L +LL I +I G
Sbjct: 101 SHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASG 134
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.435
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,141,266
Number of extensions: 1150661
Number of successful extensions: 1154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1149
Number of HSP's successfully gapped: 26
Length of query: 233
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 139
Effective length of database: 6,768,326
Effective search space: 940797314
Effective search space used: 940797314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)