RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12483
(233 letters)
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 149 bits (377), Expect = 5e-44
Identities = 46/210 (21%), Positives = 96/210 (45%), Gaps = 21/210 (10%)
Query: 45 EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYD 103
+ +E + L + ++ + + + +D +L R+LRA K ++ + + ++T +WR EY
Sbjct: 34 NLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYG 93
Query: 104 VASLTDQNPIIKSHLEKNKARVLK-------HRDMNGRPVIYIPARNHNANDR----DID 152
++ + K +K + ++ K H D +GRP+ + N
Sbjct: 94 ANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEK 153
Query: 153 EITKFIVYCLE-------EACKKCFEEVVDNLCIVFDLKDFGLSCMDY--QMIKNLIWLL 203
++ + +V E AC + +++ C V DLK LS + IK++ +
Sbjct: 154 QMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADIS 213
Query: 204 SRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
+YPER+G I++SP FS + +++ +
Sbjct: 214 QNYYPERMGKFYIIHSPFGFSTMFKMVKPF 243
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 147 bits (372), Expect = 2e-43
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 15/204 (7%)
Query: 45 EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYD 103
++ + L E K++ DA ++ +D +L R+LRA K V A + KWR +Y
Sbjct: 25 NLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84
Query: 104 VASLT-DQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDR----DIDEITKFI 158
++ D + K + K + D +GRPV + N ++ + + K +
Sbjct: 85 TDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL 144
Query: 159 VYCLE-------EACKKCFEEVVDNLCIVFDLKDFGLSCMD--YQMIKNLIWLLSRHYPE 209
V+ E AC + +V+ C + DLK +S ++ ++ +YPE
Sbjct: 145 VWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPE 204
Query: 210 RLGVCLILNSPTLFSGCWTVIRGW 233
R+G I+N+P FS + + + +
Sbjct: 205 RMGKFYIINAPFGFSTAFRLFKPF 228
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 120 bits (302), Expect = 2e-32
Identities = 36/203 (17%), Positives = 85/203 (41%), Gaps = 18/203 (8%)
Query: 45 EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYD 103
+E K +E ++ + A P +D+ L R+LRA + + + K ++R + D
Sbjct: 10 PRQKEALAKFRENVQDVLPALP--NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD 67
Query: 104 VASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDR----DIDEITKFIV 159
+ ++ P +++ + + D++G PV Y +A ++ + +
Sbjct: 68 IDNIISWQP--PEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKM 125
Query: 160 YCLEEACKKCFEEV------VDNLCIVFDLKDFGLSCMDY---QMIKNLIWLLSRHYPER 210
E ++C + V+ + I++D + GL + + + + +YPE
Sbjct: 126 RECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPET 185
Query: 211 LGVCLILNSPTLFSGCWTVIRGW 233
L ++ +P LF + +I+ +
Sbjct: 186 LKRLFVVKAPKLFPVAYNLIKPF 208
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 110 bits (276), Expect = 2e-29
Identities = 36/190 (18%), Positives = 76/190 (40%), Gaps = 5/190 (2%)
Query: 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVAS 106
+ L+ R + D L R+LRA +D A++ + KWR E S
Sbjct: 9 QPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEIS 68
Query: 107 LTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEAC 166
I L+ VL+ RD G V+ + + ++ + + E
Sbjct: 69 ADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIV 128
Query: 167 KKCFEEVVDNLCIVFDLKDFGLS---CMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLF 223
++ E + + +FDL+ + S + + K + +L+ +P ++ ++N P +F
Sbjct: 129 QEV-ETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIF 187
Query: 224 SGCWTVIRGW 233
+++I+ +
Sbjct: 188 HAVFSMIKPF 197
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 110 bits (276), Expect = 4e-29
Identities = 39/202 (19%), Positives = 87/202 (43%), Gaps = 14/202 (6%)
Query: 45 EVNEEDFQKLKERMK---------MISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK 94
E EE ++L+E ++ ++ A+ +Q + R++RA K V A++ +
Sbjct: 56 ETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRG 115
Query: 95 TNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEI 154
+R++Y + ++ +E VL RD GR V+ N + + DEI
Sbjct: 116 YVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEI 175
Query: 155 TKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLS---CMDYQMIKNLIWLLSRHYPERL 211
+ + LE+ + E ++ CI+ + K F + + ++ ++ +L +P
Sbjct: 176 LQAYCFILEKLLENE-ETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWF 234
Query: 212 GVCLILNSPTLFSGCWTVIRGW 233
++ P F+ + V++ +
Sbjct: 235 KAIHFIHQPWYFTTTYNVVKPF 256
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain,
phosphatidylethanolamin binding, lipid binding, lipid
bindi protein; HET: PEV; 2.52A {Homo sapiens}
Length = 290
Score = 44.3 bits (104), Expect = 1e-05
Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 8/100 (8%)
Query: 129 RDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGL 188
G P+ Y AR + D + ++ L+ K + IV DL G
Sbjct: 37 TSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPY-------EIVVDLTHTGP 89
Query: 189 SCM-DYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCW 227
S + + + + I N +
Sbjct: 90 SNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYT 129
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding
protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A*
3p7z_A* 2d4q_A*
Length = 256
Score = 43.8 bits (103), Expect = 2e-05
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 8/116 (6%)
Query: 116 SHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVD 175
L+ G P+ Y AR + D + ++ L+ K +
Sbjct: 5 KALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPY----- 59
Query: 176 NLCIVFDLKDFGLSCM-DYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVI 230
IV DL G S + + + + I N +
Sbjct: 60 --EIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYH 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.017
Identities = 25/214 (11%), Positives = 62/214 (28%), Gaps = 60/214 (28%)
Query: 27 RLLYIGWRIEMGDQATAA----EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAF 82
L + W + + EV +++ L +K + + Y+
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT------RMYI--- 113
Query: 83 KQVDPAF---QAILKTNKWRVEYDVASLT------DQNPII---------KSHLEKNKAR 124
+Q D + Q K N R++ L + K+ + +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 125 VLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIV-----YC---------------LEE 164
K + + ++ +N N+ + ++ + K + + ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 165 ACKKCFEE--------VVDNLCIVFDLKDFGLSC 190
++ + V+ N+ F LSC
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Score = 31.0 bits (69), Expect = 0.37
Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 50/204 (24%)
Query: 60 MISDADPLQYHNDFSLKRYLRAF------KQVDPAFQAILKTNKWRVEYD--VAS----- 106
M + QY L + AF K V ++IL E D + S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE----EIDHIIMSKDAVS 62
Query: 107 ---------LTDQNPIIK----SHLEKN----KARV-LKHRDMNGRPVIYIPARNHNAND 148
L+ Q +++ L N + + + R + +YI R+ ND
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 149 RDIDEITKFIVYCLEE--ACKKCFEEVVDNLCIVFD-LKDFGLSCM------DY----QM 195
+ K+ V L+ ++ E+ ++ D + G + + Y +M
Sbjct: 123 NQV--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 196 IKNLIWLLSRHYPERLGVCLILNS 219
+ WL ++ V +L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQK 204
Score = 28.7 bits (63), Expect = 2.2
Identities = 35/246 (14%), Positives = 73/246 (29%), Gaps = 69/246 (28%)
Query: 31 IGWRIEMGDQATAAEVNEEDFQKLKERMKM-------ISDADPLQYHND-------FSLK 76
I W + + + + V E QKL ++ S L+ H+ K
Sbjct: 184 IFW-LNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 77 RYLRAF--------KQVDPAF----QAILKTNKWRVEYDVASLTDQNPIIKSH---LEKN 121
Y + AF + +L T +V +++ T + + H L +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 122 K-----ARV-------LKHRDMNGRPVIY--IPARNHNANDR-------DIDEITKFIVY 160
+ + L + P I + + D++T I
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 161 CLE----EACKKCFEEVV---DN-------LCIV-FDLKDFGLSCMDYQMIKNLIWLLSR 205
L +K F+ + + L ++ FD+ + + ++ K L+ +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEK 419
Query: 206 HYPERL 211
E
Sbjct: 420 QPKEST 425
Score = 27.9 bits (61), Expect = 3.4
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 138 YIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIV 180
YI N +R ++ I F+ EE ++
Sbjct: 533 YI-CDNDPKYERLVNAILDFLPKI-EENLICS-----KYTDLL 568
Score = 27.5 bits (60), Expect = 5.1
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 24 LNLRLLYIGWRIEMGDQATAAEVNEED-FQKLKERMKMISDADPLQYHNDFSLKRYLRAF 82
L+ R ++ +I A A + + Q+LK I D DP +Y R + A
Sbjct: 498 LDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYE------RLVNAI 548
Query: 83 KQVDPAFQAILKTNKWRVEY-DVASLTDQNP 112
F ++ N +Y D+ +
Sbjct: 549 LD----FLPKIEENLICSKYTDLLRIALMAE 575
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.034
Identities = 40/260 (15%), Positives = 72/260 (27%), Gaps = 94/260 (36%)
Query: 1 MSGVASHSPD-------SPSTGGPD-QMCGELNLRLL-YIGWR---------IEMGDQAT 42
+ G HS + + + + +L +IG R +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 43 AAEVNEE-----------DFQKLKERMKMISDADPLQYH------N---DF--------- 73
+ E NE +++++ + + P N +
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 74 -SLKRYLRAFKQVDPAFQAILKTNKWRVEYD------------VAS------LTDQNPII 114
L LR K A ++ R+ + VAS L + +I
Sbjct: 387 YGLNLTLRKAK-------APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 115 KSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDI----DEITKFIVYCLEEACKKC- 169
L KN +D+ PV Y + D+ I++ IV C+
Sbjct: 440 NKDLVKNNVS-FNAKDI-QIPV-Y-----DTFDGSDLRVLSGSISERIVDCI--IRLPVK 489
Query: 170 FEEVVDN--LCIVFDLKDFG 187
+E I+ DFG
Sbjct: 490 WETTTQFKATHIL----DFG 505
Score = 27.7 bits (61), Expect = 4.3
Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 28/101 (27%)
Query: 103 DVASLTDQNPIIKSH--LEKN---------KARVLKHRDMNGRPVIYIPARNHNANDRDI 151
D S P+ SH LE A L+ + P P A+D
Sbjct: 2 DAYSTR---PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE---PTEGFAADDEPT 55
Query: 152 DEI---TKFIVYC---LEEACKKCFEEVVDNLCIVFDLKDF 186
KF+ Y +E + F++V++ L +F
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-----LTEF 91
>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin,
Fe/alpha-ketoglutarate dependent hydroxylase,
2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas
aeruginosa}
Length = 293
Score = 31.6 bits (72), Expect = 0.18
Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 80 RAFKQVDPAFQAILKTNKWRVEYDVA--SLTDQNPIIKSHLEKNKARVLKHRDMNGRPVI 137
A + D + + + R + A S PI++ H + +
Sbjct: 148 AALQLADSSELELWRRASGRYQRSAAHYSSRSAAPIVERHPRREFPILRFCEPPVEGDAS 207
Query: 138 YIPARNHNANDRDIDEITKFI 158
+I + + ++ + +
Sbjct: 208 FINPSEFHYDGIAPEQRGELL 228
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.26
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 25/54 (46%)
Query: 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVE 101
++ +KL+ +K+ Y +D S A PA AI T +E
Sbjct: 19 KQALKKLQASLKL--------YADD-S------A-----PAL-AIKAT----ME 47
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 29.6 bits (66), Expect = 0.84
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 10/120 (8%)
Query: 115 KSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEI----------TKFIVYCLEE 164
K+ + K L + + +YI R + R + ++ T + L
Sbjct: 58 KTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYR 117
Query: 165 ACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFS 224
K + + IV D D + + ++ L + S ++ I N
Sbjct: 118 RLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide biosynthesis,
magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB:
3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 29.4 bits (67), Expect = 0.91
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 26 LRLLYIGWRIEMG--DQATAAEVN-EEDFQKLKERMK 59
LR+L+ G +I + + V+ ED ++++ M+
Sbjct: 228 LRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEMR 264
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 28.4 bits (64), Expect = 2.0
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 24/73 (32%)
Query: 17 PDQMCGELNLRLLYIGWRIEMGDQAT----AAEVNEEDFQKLKERMKMISDADPLQYHND 72
+LL G MGD E+ +D + L E++K H
Sbjct: 287 TQPFIS----KLL--G----MGDIEGLIDKVNELKLDDNEALIEKLK----------HGQ 326
Query: 73 FSLKRYLRAFKQV 85
F+L+ F+ +
Sbjct: 327 FTLRDMYEQFQNI 339
>2y3w_A SAS6, spindle assembly abnormal protein 6 homolog; structural
protein, cytoskeleton, basal BODY, centriole, CAR
cartwheel HUB; 1.98A {Danio rerio}
Length = 182
Score = 27.3 bits (60), Expect = 3.0
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 44 AEVNEEDFQKLKERMKMISDADPLQYHNDFS--LKRYLRAFKQVDPAFQAILKTNKWRVE 101
++EEDFQ LK + ++ D + F L++ + + +P F L ++ +
Sbjct: 63 LIISEEDFQSLKVQQGLLIDFT--SFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFD 120
Query: 102 YDVASL 107
+ ++L
Sbjct: 121 HSPSNL 126
>2y3v_A SAS6, spindle assembly abnormal protein 6 homolog; structural
protein, cytoskeleton, basal BODY, centriole, CAR
cartwheel HUB; 1.92A {Danio rerio}
Length = 159
Score = 26.9 bits (59), Expect = 3.7
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 44 AEVNEEDFQKLKERMKMISDADPLQYHNDFS--LKRYLRAFKQVDPAFQAILKTNKWRVE 101
++EEDFQ LK + ++ D + F L++ + + +P F L ++ +
Sbjct: 63 LIISEEDFQSLKVQQGLLIDFT--SFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFD 120
Query: 102 YDVASL 107
+ ++L
Sbjct: 121 HSPSNL 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.435
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,716,896
Number of extensions: 221123
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 34
Length of query: 233
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,188,903
Effective search space: 599013129
Effective search space used: 599013129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)