RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12483
(233 letters)
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 87.4 bits (216), Expect = 4e-22
Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 114 IKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEV 173
I L+ VL+ RD G V+ + + ++ + + E ++ E
Sbjct: 2 IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEV-ETQ 60
Query: 174 VDNLCIVFDLKDFGLS---CMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVI 230
+ + +FDL+ + S + + K + +L+ +P ++ ++N P +F +++I
Sbjct: 61 RNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI 120
Query: 231 RGW 233
+ +
Sbjct: 121 KPF 123
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
phosphatidylinositol transfer protein sec14p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 203
Score = 74.8 bits (183), Expect = 3e-17
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 128 HRDMNGRPVIYIPARNHNAND----RDIDEITKFIVYCLEEACKKCFEE-------VVDN 176
D +GRPV + N ++ + + K +V+ E + +V+
Sbjct: 17 KTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVET 76
Query: 177 LCIVFDLKDFGLSCMD--YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
C + DLK +S ++ ++ +YPER+G I+N+P FS + + + +
Sbjct: 77 SCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF 135
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
middle domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 69.7 bits (170), Expect = 2e-15
Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 118 LEKNKARVLKHRDMNGRPVIYIPARNHNANDR----DIDEITKFIVYCLEEACKKCFEE- 172
+++ + + D++G PV Y +A ++ + + E ++C +
Sbjct: 5 IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQT 64
Query: 173 -----VVDNLCIVFDLKDFGLSCMDY---QMIKNLIWLLSRHYPERLGVCLILNSPTLFS 224
V+ + I++D + GL + + + + +YPE L ++ +P LF
Sbjct: 65 TKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFP 124
Query: 225 GCWTVIRGW 233
+ +I+ +
Sbjct: 125 VAYNLIKPF 133
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol
transfer protein sec14p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 51.3 bits (123), Expect = 2e-09
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 45 EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYD 103
++ + L E K++ DA ++ +D +L R+LRA K V A + KWR +Y
Sbjct: 25 NLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84
Query: 104 VASLTD 109
++
Sbjct: 85 TDTILQ 90
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 46.3 bits (110), Expect = 7e-08
Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 45 EVNEEDFQKLKERMKMISDADPLQ-YHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEY 102
+++ + L + + + D P +D+ L R+LRA + + + K ++R +
Sbjct: 7 DLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQK 66
Query: 103 DVASLTD 109
D+ ++
Sbjct: 67 DIDNIIS 73
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 35.5 bits (82), Expect = 4e-04
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEY 102
+ L+ R + D L R+LRA +D A++ + KWR E
Sbjct: 1 QPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC 56
>d1w6sb_ a.137.2.1 (B:) Methanol dehydrogenase, light chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 73
Score = 26.5 bits (58), Expect = 0.70
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 87 PAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARV 125
P F + +K+ ++D L Q IK E+NK RV
Sbjct: 17 PGFPEKIAGSKYDPKHDPKELNKQADSIKQMEERNKKRV 55
>d2ad6b1 a.137.2.1 (B:1-69) Methanol dehydrogenase, light chain
{Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 69
Score = 26.5 bits (58), Expect = 0.78
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 87 PAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARV 125
P + + +K+ ++D L Q IK+ +N R+
Sbjct: 17 PGYPEKIAGSKYDPKHDPVELNKQEESIKAMDARNAKRI 55
>d1lrwb_ a.137.2.1 (B:) Methanol dehydrogenase, light chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 83
Score = 26.1 bits (57), Expect = 1.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 87 PAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARV 125
P + A ++ +K+ ++D A L+ Q + +N+ RV
Sbjct: 17 PDYPAKVEGSKYDPQHDPAELSKQGESLAVMDARNEWRV 55
>d1jbob_ a.1.1.3 (B:) Phycocyanin beta subunit {Synechococcus
elongatus [TaxId: 32046]}
Length = 172
Score = 26.0 bits (57), Expect = 3.0
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 140 PARNHNANDRDIDEITKFIVYC--------LEEACKKCFEEVVDNLCIVFDLKDFGLSCM 191
R A RD++ I +++ Y L++ C E L + M
Sbjct: 75 TNRRMAACLRDMEIILRYVTYAILAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIQKM 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.435
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 928,240
Number of extensions: 44374
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 15
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)