BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12486
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CQW0|EMC6_MOUSE ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=2
SV=1
Length = 110
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 56/71 (78%)
Query: 38 LSGCTAGILGLTGFYGFGFYVLAVIGLWVLLLMRAGSKWNRYFLNRKSLLTNGFVGGLCT 97
LSG TAGILGLTG YGF FY+LA + L +LL+++AG +WN+YF +R+ L T G +GGL T
Sbjct: 36 LSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYFKSRRPLFTGGLIGGLFT 95
Query: 98 YVLFWTFFYTM 108
YVLFWTF Y M
Sbjct: 96 YVLFWTFLYGM 106
>sp|Q9BV81|EMC6_HUMAN ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1
SV=1
Length = 110
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 56/71 (78%)
Query: 38 LSGCTAGILGLTGFYGFGFYVLAVIGLWVLLLMRAGSKWNRYFLNRKSLLTNGFVGGLCT 97
LSG TAGILGLTG YGF FY+LA + L +LL+++AG +WN+YF +R+ L T G +GGL T
Sbjct: 36 LSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYFKSRRPLFTGGLIGGLFT 95
Query: 98 YVLFWTFFYTM 108
YVLFWTF Y M
Sbjct: 96 YVLFWTFLYGM 106
>sp|Q68EU8|EMC6_XENLA ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6
PE=3 SV=1
Length = 110
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 37 PLSGCTAGILGLTGFYGFGFYVLAVIGLWVLLLMRAGSKWNRYFLNRKSLLTNGFVGGLC 96
LSG TAGILGLT YGF FY LA L +LL++++G KWN+YF +RK L T G VGGL
Sbjct: 35 ALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSGRKWNKYFKSRKPLFTGGLVGGLF 94
Query: 97 TYVLFWTFFYTM 108
TYVLFWTF Y M
Sbjct: 95 TYVLFWTFLYGM 106
>sp|Q6GLC5|EMC6_XENTR ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6
PE=3 SV=1
Length = 110
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 53/72 (73%)
Query: 37 PLSGCTAGILGLTGFYGFGFYVLAVIGLWVLLLMRAGSKWNRYFLNRKSLLTNGFVGGLC 96
LSG TAGILGLT YGF FY LA L +LL++++G KWN+YF +RK L T G +GGL
Sbjct: 35 ALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSGRKWNKYFKSRKPLFTGGLIGGLF 94
Query: 97 TYVLFWTFFYTM 108
TYVLFWTF Y M
Sbjct: 95 TYVLFWTFLYGM 106
>sp|Q3ZCG8|EMC6_BOVIN ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3
SV=1
Length = 110
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 55/71 (77%)
Query: 38 LSGCTAGILGLTGFYGFGFYVLAVIGLWVLLLMRAGSKWNRYFLNRKSLLTNGFVGGLCT 97
LSG TAGILGLTG YGF FY+LA I L +LL+++A +WN+YF +R+ L T G +GGL T
Sbjct: 36 LSGATAGILGLTGLYGFIFYLLASILLSLLLILKARRRWNKYFKSRRPLFTGGLIGGLFT 95
Query: 98 YVLFWTFFYTM 108
YVLFWTF Y M
Sbjct: 96 YVLFWTFLYGM 106
>sp|Q6P0F0|EMC6_DANRE ER membrane protein complex subunit 6 OS=Danio rerio GN=emc6 PE=2
SV=1
Length = 110
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 53/72 (73%)
Query: 37 PLSGCTAGILGLTGFYGFGFYVLAVIGLWVLLLMRAGSKWNRYFLNRKSLLTNGFVGGLC 96
LSG TAGILGLTG YGF FY LA L +LL+++AG +WN+ F +R+ L T G VGGL
Sbjct: 35 ALSGATAGILGLTGLYGFVFYFLASFLLSLLLILKAGRRWNKCFKSRRLLFTGGLVGGLF 94
Query: 97 TYVLFWTFFYTM 108
TYVLFWTF Y M
Sbjct: 95 TYVLFWTFLYGM 106
>sp|Q1ZXH4|EMC6_DICDI ER membrane protein complex subunit 6 OS=Dictyostelium discoideum
GN=emc6 PE=3 SV=1
Length = 123
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 38 LSGCTAGILGLTGFYGFGFYVLAVIGLWVLLLMRAGSKWNRYFLNRKSLLTNGFVGGLCT 97
L G AG++G +G YGF FY I L ++ + YF N +S+ + GL
Sbjct: 49 LGGAIAGVIGFSGVYGFLFYFFIYITFCSLFTLKENKNLHLYFPNPRSIWFDSIGAGLMP 108
Query: 98 YVLFWTFFYTM 108
Y+LFWTF Y +
Sbjct: 109 YILFWTFLYNI 119
>sp|O59764|YJMB_SCHPO ER membrane protein complex subunit 6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1020.11c PE=3 SV=2
Length = 108
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 1 MPKPKSSKP--GDHTAYSELACAKQCSCGRVLPAHLWLPLSGCTAGILGLTGFYGFGFYV 58
M + K P ++ AY+E + S R L + + GC AGILGLT + G YV
Sbjct: 1 MERDKGVAPIVVENVAYNE----QVVSFVRNLTSSFF----GCAAGILGLTSYEGLALYV 52
Query: 59 LAVIGL-WVLLLMRAGSKWNRYFLNRKSLLTNGFVGGLCTYVLFWTFFYTM 108
L + ++L ++ +Y+ + G +YVL WT FY++
Sbjct: 53 LGYFFVSFLLFALKMRGNLTKYYQPGYKFWIAKILDGAPSYVLTWTLFYSL 103
>sp|A5WCC8|CRCB_PSYWF Protein CrcB homolog OS=Psychrobacter sp. (strain PRwf-1) GN=crcB
PE=3 SV=1
Length = 123
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
Query: 19 ACAKQCSCGRVLPAHLWLPLSGCTAGILGLTGFYGFGFYVLAVIGLWVLLLMRAGSKWNR 78
AC + GR+ P H W+PL A +LG G +IG+ +++ M+AG W+
Sbjct: 14 ACLRAL-LGRLNPLHAWIPLGTLGANVLG--GL---------LIGMAMVVFMKAGQLWHP 61
Query: 79 YFLNRKSLLTNGFVGGLCTYVLF 101
N K + GF+GGL T+ F
Sbjct: 62 ---NVKLFVMTGFLGGLTTFSTF 81
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 113 IASHMTSQSLWEYLPNQSLCVYFPIPNQGMEFYSCL 148
+A+H ++ +WE P+Q+L P P+Q EF+S L
Sbjct: 687 LANHWVAKKIWESFPHQALLRQHPPPHQ--EFFSEL 720
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1
Length = 1054
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 113 IASHMTSQSLWEYLPNQSLCVYFPIPNQGMEFYSCL 148
+A+H ++ +WE P+Q+L P P+Q EF+S L
Sbjct: 687 LANHWVAKKIWESFPHQALLRQHPPPHQ--EFFSEL 720
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 113 IASHMTSQSLWEYLPNQSLCVYFPIPNQGMEFYSCL 148
+A+H ++ +WE P+Q+L P P+Q EF+S L
Sbjct: 687 LANHWVAKKIWESFPHQALLRQHPPPHQ--EFFSEL 720
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 113 IASHMTSQSLWEYLPNQSLCVYFPIPNQGMEFYSCL 148
+A+H ++ +WE P+Q+L P P+Q EF+S L
Sbjct: 687 LANHWVAKKIWESFPHQALLRQHPPPHQ--EFFSEL 720
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 113 IASHMTSQSLWEYLPNQSLCVYFPIPNQGMEFYSCL 148
+A+H ++ +WE P+Q+L P P+Q EF+S L
Sbjct: 687 LANHWVAKKIWESFPHQALLRRHPPPHQ--EFFSEL 720
>sp|B4JLU7|TRMB_DROGR tRNA (guanine-N(7)-)-methyltransferase OS=Drosophila grimshawi
GN=GH24451 PE=3 SV=1
Length = 247
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 19/68 (27%)
Query: 71 RAGSKWNRYFLNRKSLLTNGFV---GGLCTYVLFWTFFYTMGD-----KWIASHMTSQSL 122
RA KW +N+ L +V GGL YTM D KWI SHMT L
Sbjct: 156 RAKHKWR--IINQALLSEYAYVLRTGGLV---------YTMTDVEDLHKWIVSHMTQHPL 204
Query: 123 WEYLPNQS 130
+E L +++
Sbjct: 205 YERLSDEA 212
>sp|P46971|PMT4_YEAST Dolichyl-phosphate-mannose--protein mannosyltransferase 4
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PMT4 PE=1 SV=1
Length = 762
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 33 HLWLPLSGCTAGILGLTGFYGFGFY----VLAVIGLWVLLLMRAGSKWNRYFLNRKSLLT 88
++WL +G + + T + G Y AV+ LW LL ++AG R F+ S
Sbjct: 224 YIWLHATGLSLSFVISTKYVGVMTYSAIGFAAVVNLWQLLDIKAGLSL-RQFMRHFSKRL 282
Query: 89 NGFVGGLCTYVL----FWTFFYTMGDKWIASHMTSQSLWEYLPNQSLCV 133
NG V L +V+ FW F + S E L + L V
Sbjct: 283 NGLV--LIPFVIYLFWFWVHFTVLNTSGPGDAFMSAEFQETLKDSPLSV 329
>sp|P30628|VPP1_CAEEL Probable V-type proton ATPase 116 kDa subunit a OS=Caenorhabditis
elegans GN=unc-32 PE=2 SV=3
Length = 905
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 64 LWVLLLMRAGSK---WNRYFLNRKSLLTNGFVGGLCTYVLFWTF 104
LW L L A W F R + + +G+ G + TY+LF+ F
Sbjct: 805 LWALSLAHAQLSDVLWTMVF--RNAFVLDGYTGAIATYILFFIF 846
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2
PE=1 SV=1
Length = 573
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 21/61 (34%)
Query: 31 PAHLWLPLSGCTAGILGLTG------------FYGFGFYV---------LAVIGLWVLLL 69
P HL+ L+G G+L TG +YGFGF + L +IGLW L+
Sbjct: 393 PFHLFDALAGTCGGVLRGTGKQKIGAVLNTIGYYGFGFPIGVSLMFAAKLGIIGLWAGLI 452
Query: 70 M 70
+
Sbjct: 453 V 453
>sp|A0QQ72|PHNF_MYCS2 HTH-type transcriptional repressor PhnF OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=phnF PE=1 SV=2
Length = 244
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 3 KPKSSKPGDHTAYSELACAKQCSCGRVLPAHLWLPLSGCTAGILGL 48
+PK +P +Y+E A A+ S GR+L A L AG+LG+
Sbjct: 73 RPKIRQPLGMGSYTEAAKAQGLSAGRILVAWSDLTADEVLAGVLGV 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.497
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,005,946
Number of Sequences: 539616
Number of extensions: 2421352
Number of successful extensions: 5404
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 5382
Number of HSP's gapped (non-prelim): 58
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)