Query psy12486
Match_columns 148
No_of_seqs 105 out of 175
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 20:34:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 34.1 12 0.00042 23.0 0.7 13 36-48 12-24 (44)
2 2l2t_A Receptor tyrosine-prote 32.1 19 0.00065 22.2 1.4 12 36-47 11-22 (44)
3 3ssb_C IMPI alpha, inducible m 25.9 19 0.00065 21.8 0.5 11 137-147 7-17 (40)
4 3cwb_I Mitochondrial ubiquinol 20.5 33 0.0011 21.9 0.9 21 117-137 24-44 (52)
5 1afo_A Glycophorin A; integral 20.0 29 0.001 21.1 0.6 13 36-48 14-26 (40)
6 2k9j_B Integrin beta-3; transm 13.0 65 0.0022 19.4 0.9 11 36-46 11-21 (43)
7 2l34_A TYRO protein tyrosine k 12.4 68 0.0023 18.4 0.8 23 36-58 7-29 (33)
8 2klu_A T-cell surface glycopro 10.2 62 0.0021 21.9 0.1 13 37-49 12-24 (70)
9 2lx0_A Membrane fusion protein 8.9 1.5E+02 0.005 16.9 1.3 15 43-57 10-24 (32)
10 1rh5_B Preprotein translocase 8.8 3.2E+02 0.011 18.2 3.3 29 36-67 38-66 (74)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.15 E-value=12 Score=23.02 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=8.7
Q ss_pred hhhHhhhhhhccc
Q psy12486 36 LPLSGCTAGILGL 48 (148)
Q Consensus 36 sll~Gi~AGILGL 48 (148)
++.+|++.|++++
T Consensus 12 ~IA~gVVgGv~~~ 24 (44)
T 2ks1_B 12 SIATGMVGALLLL 24 (44)
T ss_dssp SSTHHHHHHHHHH
T ss_pred eEEeehhHHHHHH
Confidence 6677777776543
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.10 E-value=19 Score=22.20 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=7.9
Q ss_pred hhhHhhhhhhcc
Q psy12486 36 LPLSGCTAGILG 47 (148)
Q Consensus 36 sll~Gi~AGILG 47 (148)
++.+|++.|+++
T Consensus 11 aIA~gVVgGv~~ 22 (44)
T 2l2t_A 11 LIAAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred eEEEeehHHHHH
Confidence 666777776654
No 3
>3ssb_C IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=25.90 E-value=19 Score=21.78 Aligned_cols=11 Identities=55% Similarity=1.126 Sum_probs=9.5
Q ss_pred cCCCCcccccc
Q psy12486 137 IPNQGMEFYSC 147 (148)
Q Consensus 137 ~~~~~~~~~~~ 147 (148)
|-|-|.|||+|
T Consensus 7 ~cng~~e~~~c 17 (40)
T 3ssb_C 7 ICNGGHEYYEC 17 (40)
T ss_dssp CCCSSSEEEEE
T ss_pred EeCCCCeeEec
Confidence 56889999998
No 4
>3cwb_I Mitochondrial ubiquinol-cytochrome C reductase IR subunit, leader sequence; crocacin D, inhibitor design, structure-activity relationshi polyketide, fungicide; HET: BOG HEM PEE ICX UQ HEC CDL; 3.51A {Gallus gallus}
Probab=20.46 E-value=33 Score=21.92 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=17.6
Q ss_pred chhhhhhccCCCCcceeeecc
Q psy12486 117 MTSQSLWEYLPNQSLCVYFPI 137 (148)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ 137 (148)
.++|+|+-.+|.+++|+-.=|
T Consensus 24 l~~eSLsgqlp~~~l~vsvGi 44 (52)
T 3cwb_I 24 LCRESMSGRSARRDLVAGISL 44 (52)
T ss_dssp CSSTTTSSCSCSSSCCEEEES
T ss_pred chHHhhccccCCCCcEEEECC
Confidence 389999999999999986543
No 5
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=19.99 E-value=29 Score=21.13 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.6
Q ss_pred hhhHhhhhhhccc
Q psy12486 36 LPLSGCTAGILGL 48 (148)
Q Consensus 36 sll~Gi~AGILGL 48 (148)
.+++|+.|||+|.
T Consensus 14 lII~~vmaGiIG~ 26 (40)
T 1afo_A 14 LIIFGVMAGVIGT 26 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5788999999873
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=12.96 E-value=65 Score=19.35 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=8.7
Q ss_pred hhhHhhhhhhc
Q psy12486 36 LPLSGCTAGIL 46 (148)
Q Consensus 36 sll~Gi~AGIL 46 (148)
+++.|+++||+
T Consensus 11 ~Iv~gvi~~iv 21 (43)
T 2k9j_B 11 VVLLSVMGAIL 21 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred ehHHHHHHHHH
Confidence 77788888876
No 7
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=12.42 E-value=68 Score=18.39 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=13.8
Q ss_pred hhhHhhhhhhccccchhhHHHHH
Q psy12486 36 LPLSGCTAGILGLTGFYGFGFYV 58 (148)
Q Consensus 36 sll~Gi~AGILGLtgl~GFlfy~ 58 (148)
..++|++-|-+-.|.+-+.++|+
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeEeHHHHHHHHHHHHHHhh
Confidence 55667776666655555555554
No 8
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=10.17 E-value=62 Score=21.86 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=7.4
Q ss_pred hhHhhhhhhcccc
Q psy12486 37 PLSGCTAGILGLT 49 (148)
Q Consensus 37 ll~Gi~AGILGLt 49 (148)
++.|.+||.|.++
T Consensus 12 ivlGg~~~lll~~ 24 (70)
T 2klu_A 12 IVLGGVAGLLLFI 24 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 4666666655443
No 9
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=8.87 E-value=1.5e+02 Score=16.89 Aligned_cols=15 Identities=47% Similarity=1.063 Sum_probs=5.9
Q ss_pred hhhccccchhhHHHH
Q psy12486 43 AGILGLTGFYGFGFY 57 (148)
Q Consensus 43 AGILGLtgl~GFlfy 57 (148)
||...|--+-.|.|.
T Consensus 10 aglvalltflafgfw 24 (32)
T 2lx0_A 10 AGLVALLTFLAFGFW 24 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 343334333344433
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=8.80 E-value=3.2e+02 Score=18.20 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=17.2
Q ss_pred hhhHhhhhhhccccchhhHHHHHHHHHHHHHH
Q psy12486 36 LPLSGCTAGILGLTGFYGFGFYVLAVIGLWVL 67 (148)
Q Consensus 36 sll~Gi~AGILGLtgl~GFlfy~i~~ll~sll 67 (148)
+-+.|++..++ |+-||+.+++...+-+.+
T Consensus 38 ak~~~iG~~im---G~IGfiIkli~ipIn~ii 66 (74)
T 1rh5_B 38 AKVTALGISLL---GIIGYIIHVPATYIKGIL 66 (74)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHhccc
Confidence 44555555555 456777777766655543
Done!