Query psy12486
Match_columns 148
No_of_seqs 105 out of 175
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 20:35:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12486.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12486hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 35.4 19 0.0014 20.1 3.2 22 51-72 6-27 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 34.6 17 0.0012 21.2 3.0 22 51-72 5-26 (45)
3 d2pspa1 g.16.1.1 (A:1-53) Panc 15.6 29 0.0021 20.4 1.3 22 118-140 31-53 (53)
4 d1px9a_ g.3.7.2 (A:) Ergtoxin 14.7 21 0.0015 20.3 0.4 9 127-135 29-37 (42)
5 d1nekc_ f.21.2.2 (C:) Succinat 13.4 54 0.0039 21.6 2.4 21 88-108 65-85 (129)
6 d1rh5b_ f.23.28.1 (B:) Preprot 12.4 64 0.0047 19.2 2.3 19 48-66 36-54 (56)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 9.3 49 0.0035 17.5 0.8 11 36-46 13-23 (32)
8 d1rh1a2 f.1.1.1 (A:313-511) Co 9.1 89 0.0065 22.9 2.6 30 36-65 153-183 (199)
9 d1haea_ g.3.11.1 (A:) Hereguli 8.0 81 0.0059 18.3 1.6 22 125-147 13-34 (63)
10 d1q90g_ f.23.26.1 (G:) PetG su 6.6 59 0.0043 17.1 0.3 14 36-49 4-17 (30)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=35.39 E-value=19 Score=20.14 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q psy12486 51 FYGFGFYVLAVIGLWVLLLMRA 72 (148)
Q Consensus 51 l~GFlfy~i~~ll~sll~~~k~ 72 (148)
+.|++.|+++.++.-.++..|.
T Consensus 6 v~gl~~F~~~v~laQi~lVlKK 27 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQLMLILKK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999888888877764
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=34.57 E-value=17 Score=21.19 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q psy12486 51 FYGFGFYVLAVIGLWVLLLMRA 72 (148)
Q Consensus 51 l~GFlfy~i~~ll~sll~~~k~ 72 (148)
+.|+++|+++.++.-.++..|.
T Consensus 5 v~gll~F~~~v~laQi~LVLKK 26 (45)
T d1q90a3 5 IQGLLVFFSFVLLTQVLLVLKK 26 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999998888777777664
No 3
>d2pspa1 g.16.1.1 (A:1-53) Pancreatic spasmolytic polypeptide {Pig (Sus scrofa) [TaxId: 9823]}
Probab=15.59 E-value=29 Score=20.43 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=14.9
Q ss_pred hhhhhhc-cCCCCcceeeeccCCC
Q psy12486 118 TSQSLWE-YLPNQSLCVYFPIPNQ 140 (148)
Q Consensus 118 ~~~~~~~-~~~~~~~~~~~~~~~~ 140 (148)
.|.|.|. ..||.--|+| |+++|
T Consensus 31 ~rGCCw~~s~~~~PwCfy-P~~~~ 53 (53)
T d2pspa1 31 TSGCCFDSQVPGVPWCFK-PLPAQ 53 (53)
T ss_dssp HTTCEECCSSTTSCSEEC-CCCCC
T ss_pred hCcCcCCCCCCCCCcCcc-cCCCC
Confidence 4567775 3566677765 88876
No 4
>d1px9a_ g.3.7.2 (A:) Ergtoxin (HERG specific toxin CnErg1) {Scorpion (Centruroides noxius) [TaxId: 6878]}
Probab=14.67 E-value=21 Score=20.34 Aligned_cols=9 Identities=33% Similarity=0.962 Sum_probs=7.0
Q ss_pred CCCcceeee
Q psy12486 127 PNQSLCVYF 135 (148)
Q Consensus 127 ~~~~~~~~~ 135 (148)
-|.|||+|+
T Consensus 29 h~~gtc~~f 37 (42)
T d1px9a_ 29 HNGGTCMFF 37 (42)
T ss_dssp SCCEEEESS
T ss_pred CCCceEEEE
Confidence 478888886
No 5
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=13.37 E-value=54 Score=21.58 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=14.3
Q ss_pred ecCcccchhhhHHHHHhhhhh
Q psy12486 88 TNGFVGGLCTYVLFWTFFYTM 108 (148)
Q Consensus 88 ~~g~~~~L~~FVL~WTl~Y~l 108 (148)
.++.+..+.-|.+.|.++|=+
T Consensus 65 ~~~~~~~~~~~~~~~~~~yH~ 85 (129)
T d1nekc_ 65 MGSFFVKFIMWGILTALAYHV 85 (129)
T ss_dssp TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566777778888887733
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.42 E-value=64 Score=19.24 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=11.5
Q ss_pred ccchhhHHHHHHHHHHHHH
Q psy12486 48 LTGFYGFGFYVLAVIGLWV 66 (148)
Q Consensus 48 Ltgl~GFlfy~i~~ll~sl 66 (148)
+-|+-||+.|++...+-+.
T Consensus 36 i~G~IGf~I~li~~~i~~i 54 (56)
T d1rh5b_ 36 LLGIIGYIIHVPATYIKGI 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3456677777766665543
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.31 E-value=49 Score=17.51 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=8.7
Q ss_pred hhhHhhhhhhc
Q psy12486 36 LPLSGCTAGIL 46 (148)
Q Consensus 36 sll~Gi~AGIL 46 (148)
++.+|++.||+
T Consensus 13 alffgiavgii 23 (32)
T d2e74e1 13 ALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhe
Confidence 78888888864
No 8
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.07 E-value=89 Score=22.95 Aligned_cols=30 Identities=23% Similarity=0.014 Sum_probs=16.4
Q ss_pred hhhHhhhhhhcccc-chhhHHHHHHHHHHHH
Q psy12486 36 LPLSGCTAGILGLT-GFYGFGFYVLAVIGLW 65 (148)
Q Consensus 36 sll~Gi~AGILGLt-gl~GFlfy~i~~ll~s 65 (148)
|.+.|...|++|+. +.-|++-.++..++.+
T Consensus 153 s~~~g~~~~~~g~~~t~vgi~giii~~~v~a 183 (199)
T d1rh1a2 153 SLTLGSALIAFGLSATVVGFVGVVIAGAIGA 183 (199)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56667777788876 3334444333333333
No 9
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.00 E-value=81 Score=18.26 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=15.0
Q ss_pred cCCCCcceeeeccCCCCcccccc
Q psy12486 125 YLPNQSLCVYFPIPNQGMEFYSC 147 (148)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
+=.|.|+|.+.|..|.+. -|.|
T Consensus 13 ~C~NgG~C~~~~~~~~~~-~y~C 34 (63)
T d1haea_ 13 FCVNGGECFMVKDLSNPS-RYLC 34 (63)
T ss_dssp TSCTTCEEEEEESSSSSC-CEEE
T ss_pred cCCCCCEEeecccccCCC-CEEe
Confidence 345899999888766553 3444
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.58 E-value=59 Score=17.14 Aligned_cols=14 Identities=29% Similarity=0.422 Sum_probs=11.1
Q ss_pred hhhHhhhhhhcccc
Q psy12486 36 LPLSGCTAGILGLT 49 (148)
Q Consensus 36 sll~Gi~AGILGLt 49 (148)
.+++|++-|++..|
T Consensus 4 ~ll~GivlGlipiT 17 (30)
T d1q90g_ 4 PLLCGIVLGLVPVT 17 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHH
Confidence 57888888887766
Done!