RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12486
(148 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.029
Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 58/143 (40%)
Query: 3 KPKSSKPGDHTAYSELAC----AKQCSC----GRVL---PAHLWLPLSG---CTAGILGL 48
P ++ D+ ++C Q + ++L P L L G + G+
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL--- 277
Query: 49 TGFYGFGFYVLAVIGLWVLLLMRAGSKWNRYFLNRKSLLTNGFVGGLCTYVLFWTFFYTM 108
V AV + W +F++ + +T VLF+ +
Sbjct: 278 ---------VTAVA-------IAETDSWESFFVSVRKAIT----------VLFF-----I 306
Query: 109 GDKWIASHMTSQSLWEYLPNQSL 131
G + + E PN SL
Sbjct: 307 G---VRCY-------EAYPNTSL 319
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 29.6 bits (67), Expect = 0.44
Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 17/88 (19%)
Query: 38 LSGCTAGILGLTGFYGFGFYVLAVIG-LWVLLL---------------MRAGSKWNRYFL 81
+S + G + + L + +L W +
Sbjct: 650 VSITIRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEI 709
Query: 82 NRKSLLTNGFVGGLCTYVLFWTFFYTMG 109
++ G + T + FW T
Sbjct: 710 FATGVVL-GGYQAIMTVIFFWAAHKTDF 736
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 29.2 bits (66), Expect = 0.49
Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 18/103 (17%)
Query: 38 LSGCTAGILGLTGFYGFGFYVLAVIGLWVLLLMRAGS----------------KWNRYFL 81
++ + L + L + + + + + KWN L
Sbjct: 696 IALSIHLEIFLGLWIAILNRSLNIELVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKL 755
Query: 82 NRKSLLTNGFVGGLCTYVLFWTFFYTMGDKWIA-SHMTSQSLW 123
S+L G V + T++ T + + I + +
Sbjct: 756 WGMSVLL-GVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVL 797
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 0.94
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 22/56 (39%)
Query: 31 PAHLWLPLSGCTAGILGLTGFYG-----------------FGFYVL---AVIGLWV 66
PA + LP+S G G G Y + + A+IG W
Sbjct: 620 PAQVILPMS-PNHGTFGGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIG-WT 673
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 27.4 bits (61), Expect = 1.4
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 56 FYVLAVIGLW--VLLLMRAGSKW 76
F + VI W L ++ G K
Sbjct: 168 FRLDGVIPGWTEGLKNIKKGGKI 190
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 26.6 bits (59), Expect = 3.1
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 56 FYVLAVIGLWV--LLLMRAGSKW 76
F V VI W L LM AGS W
Sbjct: 153 FQVSQVIPGWTEALQLMPAGSTW 175
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 26.4 bits (59), Expect = 4.4
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 10/32 (31%)
Query: 38 LSGCTAGILGLTG---------FYGFGFYVLA 60
L+ T G++G TG FG VL
Sbjct: 139 LNRLTLGVIG-TGRIGSRVAMYGLAFGMKVLC 169
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 25.8 bits (57), Expect = 4.9
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 56 FYVLAVIGLWV--LLLMRAGSKW 76
F + +VI W L M G+KW
Sbjct: 161 FRLDSVISGWTSALQNMPTGAKW 183
>4efd_A Aminopeptidase; structural genomics, structural genomics
consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei
brucei}
Length = 522
Score = 25.9 bits (57), Expect = 6.5
Identities = 5/17 (29%), Positives = 6/17 (35%), Gaps = 1/17 (5%)
Query: 1 MPKPKSSKPGD-HTAYS 16
PKS + D S
Sbjct: 346 AIGPKSYRNDDIIVMKS 362
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 25.7 bits (57), Expect = 7.0
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 15/44 (34%)
Query: 32 AHLWLP-----LSGCTAGILGLTGFYG---------FGFYVLAV 61
LW L G T ILG TG G FG VL V
Sbjct: 127 QRLWQSHPYQGLKGRTLLILG-TGSIGQHIAHTGKHFGMKVLGV 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.497
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,331,504
Number of extensions: 122653
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 20
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.3 bits)