RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12486
         (148 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 26.2 bits (57), Expect = 1.7
 Identities = 7/74 (9%), Positives = 17/74 (22%)

Query: 53  GFGFYVLAVIGLWVLLLMRAGSKWNRYFLNRKSLLTNGFVGGLCTYVLFWTFFYTMGDKW 112
           G     L      + ++ R         ++         +GG           +      
Sbjct: 279 GLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAE 338

Query: 113 IASHMTSQSLWEYL 126
               +T   L  ++
Sbjct: 339 DGPGVTYHQLTHFM 352


>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
           subtilis [TaxId: 1423]}
          Length = 271

 Score = 25.3 bits (54), Expect = 3.1
 Identities = 10/70 (14%), Positives = 16/70 (22%), Gaps = 5/70 (7%)

Query: 74  SKWNRYFLNRKSLLTNGFVGGLCTYVLFWTFFYTMGDKWIASHM-----TSQSLWEYLPN 128
                      +   +G    L    L      T+  +  A         +  L +  P 
Sbjct: 158 DHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQ 217

Query: 129 QSLCVYFPIP 138
           QS      I 
Sbjct: 218 QSDETELGIS 227


>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa
           [TaxId: 287]}
          Length = 246

 Score = 24.5 bits (52), Expect = 7.0
 Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 6/51 (11%)

Query: 69  LMRAGSKWNRYFLNRKSLLTNGFVGGLCTYVLFWTFFYTMGDKWIASHMTS 119
           ++R  + W +   +    L+  F+           FF T        +   
Sbjct: 39  ILREQASWQKAPGDSVLTLSYSFLTK------PNDFFNTPWKYVSDIYSLG 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.497 

Gapped
Lambda     K      H
   0.267   0.0412    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 595,895
Number of extensions: 25469
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 7
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)