BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12488
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NX6|A Chain A, Crystal Structure Of Co-Chaperonin, Groes (Xoo4289) From
Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 95
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 16 GGVLIPEKAQQEXXXXXXXXXGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQEL 75
GG++IP+ A+++ G G NG PVV VGDKV+ ++ G+ + EG E
Sbjct: 23 GGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYGQYAGSSYKSEGVEY 82
Query: 76 HLFKEADLLAVI 87
+ +E D+LAVI
Sbjct: 83 KVLREDDILAVI 94
>pdb|1WNR|A Chain A, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|B Chain B, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|C Chain C, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|D Chain D, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|E Chain E, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|F Chain F, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|G Chain G, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
Length = 94
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 16 GGVLIPEKAQQEXXXXXXXXXGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQEL 75
GG+++P+ A+++ G G NG+ + V GD V+ K+GGT+IE++G+E
Sbjct: 22 GGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEY 81
Query: 76 HLFKEADLLAVIE 88
+ E DLLAV++
Sbjct: 82 VILSERDLLAVLQ 94
>pdb|1WE3|O Chain O, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|P Chain P, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|Q Chain Q, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|R Chain R, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|S Chain S, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|T Chain T, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|U Chain U, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|OO Chain o, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|PP Chain p, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|QQ Chain q, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|RR Chain r, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|SS Chain s, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|TT Chain t, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|UU Chain u, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 100
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 16 GGVLIPEKAQQEXXXXXXXXXGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQEL 75
GG+++P+ A+++ G G NG+ + V GD V+ K+GGT+IE++G+E
Sbjct: 28 GGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEY 87
Query: 76 HLFKEADLLAVIE 88
+ E DLLAV++
Sbjct: 88 VILSERDLLAVLQ 100
>pdb|1LEP|A Chain A, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|B Chain B, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|C Chain C, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|D Chain D, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|E Chain E, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|F Chain F, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|G Chain G, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
Length = 99
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 13 LFPGGVLIPEKAQQEXXXXXXXXXGPGARTPNGEYIKPV-VNVGDKVLLPKFGGTKIEVE 71
+ P G++IPE A+++ GPG +G PV V+ GD V+ K+GGT+I+
Sbjct: 22 MTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSEGDIVIYSKYGGTEIKYN 81
Query: 72 GQELHLFKEADLLAVIEK 89
G+E + D+LAV+ K
Sbjct: 82 GEEYLILSARDVLAVVSK 99
>pdb|1HX5|A Chain A, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|B Chain B, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|C Chain C, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|D Chain D, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|E Chain E, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|F Chain F, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|G Chain G, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1P3H|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|E Chain E, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|F Chain F, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|G Chain G, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|H Chain H, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|I Chain I, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|J Chain J, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|K Chain K, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|L Chain L, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|M Chain M, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|N Chain N, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
Length = 99
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 17 GVLIPEKAQQEXXXXXXXXXGPGARTPNGEYIKPV-VNVGDKVLLPKFGGTKIEVEGQEL 75
G++IP+ A+++ GPG +GE P+ V GD V+ K+GGT+I+ G+E
Sbjct: 26 GLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEY 85
Query: 76 HLFKEADLLAVIEK 89
+ D+LAV+ K
Sbjct: 86 LILSARDVLAVVSK 99
>pdb|1AON|O Chain O, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|P Chain P, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|Q Chain Q, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|R Chain R, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|S Chain S, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|T Chain T, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|U Chain U, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|O Chain O, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|P Chain P, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|Q Chain Q, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|R Chain R, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|S Chain S, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|T Chain T, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|U Chain U, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1PCQ|O Chain O, Crystal Structure Of Groel-Groes
pdb|1PCQ|P Chain P, Crystal Structure Of Groel-Groes
pdb|1PCQ|Q Chain Q, Crystal Structure Of Groel-Groes
pdb|1PCQ|R Chain R, Crystal Structure Of Groel-Groes
pdb|1PCQ|S Chain S, Crystal Structure Of Groel-Groes
pdb|1PCQ|T Chain T, Crystal Structure Of Groel-Groes
pdb|1PCQ|U Chain U, Crystal Structure Of Groel-Groes
pdb|1PF9|O Chain O, Groel-Groes-Adp
pdb|1PF9|P Chain P, Groel-Groes-Adp
pdb|1PF9|Q Chain Q, Groel-Groes-Adp
pdb|1PF9|R Chain R, Groel-Groes-Adp
pdb|1PF9|S Chain S, Groel-Groes-Adp
pdb|1PF9|T Chain T, Groel-Groes-Adp
pdb|1PF9|U Chain U, Groel-Groes-Adp
pdb|1SVT|O Chain O, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|P Chain P, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|Q Chain Q, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|R Chain R, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|S Chain S, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|T Chain T, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|U Chain U, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|O Chain O, Groel-Groes-Adp7
pdb|1SX4|P Chain P, Groel-Groes-Adp7
pdb|1SX4|Q Chain Q, Groel-Groes-Adp7
pdb|1SX4|R Chain R, Groel-Groes-Adp7
pdb|1SX4|S Chain S, Groel-Groes-Adp7
pdb|1SX4|T Chain T, Groel-Groes-Adp7
pdb|1SX4|U Chain U, Groel-Groes-Adp7
pdb|2C7C|O Chain O, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|P Chain P, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|Q Chain Q, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|R Chain R, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|S Chain S, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|T Chain T, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|U Chain U, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|O Chain O, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|P Chain P, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|Q Chain Q, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|R Chain R, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|S Chain S, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|T Chain T, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|U Chain U, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
Length = 97
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 15 PGGVLIPEKAQQEXXXXXXXXXGPGARTPNGEYIKPV-VNVGDKVLLPKFGGTKIE-VEG 72
GG+++ A + G G NGE +KP+ V VGD V+ G K E ++
Sbjct: 22 AGGIVLTGSAAAKSTRGEVLAVGNGRILENGE-VKPLDVKVGDIVIFNDGYGVKSEKIDN 80
Query: 73 QELHLFKEADLLAVIE 88
+E+ + E+D+LA++E
Sbjct: 81 EEVLIMSESDILAIVE 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.140 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,754,400
Number of Sequences: 62578
Number of extensions: 101353
Number of successful extensions: 103
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 6
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)